IGR sequence:igr3576#chr3#x1=16853469#l=1311
Mature miRNA sequence:CUAUUAAAACAAGGAGGGAGUA
encoded miRNA:MIR3a
Precursor location:954 - 1193 (negative strand)
precursor length:240 (60 basepairs)
MIR position:219 - 240 (954 - 975)
MIR length:22 (17 paired bases)
miRNA location TIGR v3:chr3:16854422<16854661
miRNA location TIGR v5:chr3:16857412<16857651
Folding energy:-47.29
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

                                                                  
UACUCCCUAC GUUUUUAAUA AUUGAUGUUU UAAGAUUUCU CACACAUAUU AUUGAAUCAA    60
((((((((-( --(((((((( -((((((((( (((((,,,,, ,,,,,,,<<< <<<<______ 

                                                                  
ACUAAAAUAA CAAUAAUUAA UUAUCUACAC ACAAUUCAAC CAAUGAUAUA ACACUCUGCG   120
__________ >>>>>>>,,, ,,,,,,,,,, ,,,,,,,,,< <<<--<<<<< <,,,,,,,[_ 

                                                                  
GAAGAUAAAU AGUCAAAAAC AAUAAAAAUU AAUGAAUAUU GUAUUGACAA CUGAAACAUU   180
___],,,,,, ,[[[[[--[[ [[[[______ ______]]]] ]]-]]]]],, ,,,,,,,,>> 

                                         ** ********** ********** 
AUAUAAUUUG GAACAAACGU UUUUCUCUAA AACAUCAACU AUUAAAACAA GGAGGGAGUA   240
>>>>--->>> >,,,,,,,,, ,,,)))-))) ))))))))-) )))))))--- )-))))))))

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs