IGR sequence:igr3459#chr5#x1=17123821#l=3126
Mature miRNA sequence:ACCAGGCUUCAUUCCCCUCA
encoded miRNA:MIR70c
Precursor location:731 - 1081 (positive strand)
precursor length:351 (113 basepairs)
MIR position:1 - 20 (731 - 750)
MIR length:20 (19 paired bases)
miRNA location TIGR v3:chr5:17124551>17124901
miRNA location TIGR v5:chr5:17533609>17533959
Folding energy:-102.72
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

********** **********                                             
ACCAGGCUUC AUUCCCCUCA ACUUACACGU UUUGCUUCUC AAUCUUCAAG ACCAAUCGUU    60
(((((((((( -((((((((( ((((((,,<< <<<<______ ______>>>> >>,,,,,,,, 

                                                                  
AGCCGAUCAC CUAAUUCUCU AGUAAGCCAA GAAAGAUGAA CAUAAAUGGU GUAUCCGUGU   120
,,,,<<<<-- ------<<<< -<<<,,,,[[ [[[[[[[[[- -[[[-[[[[_ ____]]]]-] 

                                                                  
AUAUCAUCUU UUUUUGUAUG UAUGCGUCUU UCAUCAUCAA UCCGCAGCAA UGUAUAUAAU   180
]]-]]]]]]] ]]]][[[[[[ [[[[[[[,,, ,,,,,,,,,, ,,,,{{{{{{ -{{---{{{{ 

                                                                  
AUGGUGUAUA UCAAAAACAC AUUAGGCAUA UCUAUUAAAA UUGUUUCCUU AAUAUAUCUG   240
{-{{{{{{{- ----{{{{{- --{{{{____ }}}}------ -}}}}}---- -}}}}}}}}} 

                                                                  
UUAAACCUUG CUGAUUAAGA GAAAUAAUAU AAUCGAAAUU UCUUUUGACA UGCAUGCAUA   300
}}}-}}-}}} }}},{{{{{{ {{{{{_____ _______}}} }}}}}}}},] ]]]]]]]]]] 

                                                        
UAUAUAAGAG UAACAGAUCA CCGAGUAAAG UUGAGGGGAA GGAAGCCUGG U  351
]]>>>->>>> ----->>>>, ,,,,))-))) )))))))))) -))))))))) )

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs