IGR sequence:igr3459#chr5#x1=17123821#l=3126
Mature miRNA sequence:UGAGGGGAAUGAAGCCUGGUCCGA
encoded miRNA:MIR6a
Precursor location:727 - 1085 (negative strand)
precursor length:359 (117 basepairs)
MIR position:336 - 359 (727 - 750)
MIR length:24 (19 paired bases)
miRNA location TIGR v3:chr5:17124547<17124905
miRNA location TIGR v5:chr5:17533605<17533963
Folding energy:-102.20
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

                                                                  
UUAAACCAGG CUUCCUUCCC CUCAACUUUA CUCGGUGAUC UGUUACUCUU AUAUAUAUGC    60
::::(((((( ((((-((((( (((((((((( (,<<<<-<<< <<---<<<<- -<<,,[[[[- 

                                                                  
AUGCAUGUCA AAAGAAAUUU CGAUUAUAUU AUUUCUCUUA AUCAGCAAGG UUUAACAGAU   120
[[[[,,{{{- {{{____}}} -}}},,,,,, ,{{{{{{{{{ {{{-{{{,,, ,,,,,((--- 

                                                                  
AUAUUAAGGA AACAAUUUUA AUAGAUAUGC CUAAUGUGUU UUUGAUAUAC ACCAUAUUAU   180
-(((((((__ __)----))) )))----)), ,((((((((- --((((((__ ___))))))- 

                                                                  
AUACAUUGCU GCGGAUUGAU GAUGAAAGAC GCAUACAUAC AAAAAAAGAU GAUAUACACG   240
)))))))),} }}-}}}}}}- }}-}}}},,, ]]]]-]]]]( ((--(((((( ((---(((-- 

                                                                  
GAUACACCAU UUAUGUUCAU CUUUCUUGGC UUACUAGAGA AUUAGGUGAU CGGCUAACGA   300
(((_____)) )--))))))) ))))-))),, ,>>-->>>>- -->>>>>->> >>(((----- 

                                      ***** ********** *********
UUGGUCUUGA AGAUUGAGAA GCAAAACGUG UAAGUUGAGG GGAAUGAAGC CUGGUCCGA  359
(--(((____ _)))--)--) )),,,,,))) -))))))))) ))))-))))) )))))::::

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs