View conserved binding sites

Asparagine--tRNA ligase
Binding siteNameDescriptionLocationPosition
Matrix_215ARF1ARF1, a transcription factor that binds to auxin response elementsUpstream-278
Motif_127SBOXATRBCSS-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5Upstream-111
Motif_163BOXCPSAS1Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1Upstream-273
Motif_253S1FSORPL21S1F binding site (S1 site) in spinach (S.o.) RPL21 gene encoding the plastid ribosomal protein L21; Negative element; Might play a role in downregulating RPL21 promoter activityUpstream-288
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-607
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightUpstream-290
Motif_261S1FBOXSORPS1L21S1F box conserved both in spinach RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activityUpstream-286
Motif_274MYB1 binding site motifIsolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoproteinUpstream-132
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-130
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisUpstream-281
Motif_348WBBOXPCWRKY1WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in ArabidopsisUpstream-218
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-314
Motif_462TE2F2NTPCNAte2f-2 found in the promoter of tobacco PCNA gene; Located between -84 and -77; Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissueUpstream-314
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-317
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-607
Motif_536TBOXATGAPBTbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thalianaUpstream-297
Motif_653INTRONLOWER3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant intronsUpstream-226