| Matrix_190 | ATERF1 | Not available | Upstream | -44 |
| | | Upstream | -45 |
| Matrix_234 | RAP2.3 | Not available | Upstream | -44 |
| Matrix_242 | AT2G25820;AT3G16280;AT4G32800;TINY2;tny | Not available | Upstream | -240 |
| Matrix_252 | RAP2.6 | Not available | Upstream | -44 |
| | | Upstream | -45 |
| Matrix_272 | DEAR4 | Not available | Upstream | -44 |
| Matrix_343 | AT2G33710 | Not available | Upstream | -44 |
| Matrix_378 | ATERF1 | Not available | Upstream | -44 |
| Matrix_473 | RRTF1 | Not available | Upstream | -44 |
| Matrix_515 | ddf2;ATCBF3;CBF1;CBF4 | Not available | Upstream | -1494 |
| Matrix_61 | ATCBF3 | Not available | Upstream | -1495 |
| Matrix_92 | AT1G33760 | Not available | Upstream | -239 |
| Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -432 |
| Motif_216 | PYRIMIDINEBOXHVEPB1 | Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA induction | Upstream | -249 |
| | | Upstream | -1089 |
| Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -427 |
| Motif_285 | HDZIP2ATATHB2 | Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene | Upstream | -426 |
| Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -239 |
| | | Upstream | -1495 |
| | | Upstream | -1855 |
| Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -240 |
| | | Upstream | -1496 |
| Motif_643 | DRE2COREZMRAB17 | DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA | Upstream | -240 |
| Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -54 |
| | | Upstream | -56 |
| | | Upstream | -58 |
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