PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_686
Name: LFY
Description: Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins

#Associated genes: 333
#Associated MapMan terms: 152

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	64 (19.22%)	2	3	5	12	18	10	3	11
27.3	RNA.regulation of transcription	51 (15.32%)	1	3	4	10	15	9	2	7
34	transport	25 (7.51%)	2	1	3	4	3	3	3	6
29	protein	18 (5.41%)	1	2	0	0	4	8	0	3
30	signalling	17 (5.11%)	0	1	1	6	5	2	0	2
31	cell	12 (3.60%)	0	0	1	6	0	2	0	3
20	stress	11 (3.30%)	0	1	4	3	0	2	0	1
30.5	signalling.G-proteins	10 (3.00%)	0	0	0	4	2	2	0	2
26	misc	9 (2.70%)	2	1	1	2	0	3	0	0
27.1	RNA.processing	9 (2.70%)	0	0	1	2	3	1	0	2
28	DNA	9 (2.70%)	2	0	0	2	2	1	0	2
29.5	protein.degradation	8 (2.40%)	0	1	0	0	2	4	0	1
33	development	8 (2.40%)	0	1	0	5	0	1	0	1
33.99	development.unspecified	8 (2.40%)	0	1	0	5	0	1	0	1
1	PS	7 (2.10%)	0	0	0	1	6	0	0	0
1.1	PS.lightreaction	7 (2.10%)	0	0	0	1	6	0	0	0
1.1.1	PS.lightreaction.photosystem II	7 (2.10%)	0	0	0	1	6	0	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	7 (2.10%)	0	0	0	3	2	2	0	0
1.1.1.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	6 (1.80%)	0	0	0	0	6	0	0	0
2	major CHO metabolism	6 (1.80%)	2	1	0	1	0	1	0	1
10	cell wall	6 (1.80%)	0	0	0	1	1	2	0	2
16	secondary metabolism	6 (1.80%)	0	0	3	2	0	1	0	0
20.2	stress.abiotic	6 (1.80%)	0	1	2	1	0	1	0	1
27.3.99	RNA.regulation of transcription.unclassified	6 (1.80%)	0	2	0	1	2	0	0	1
31.1	cell.organisation	6 (1.80%)	0	0	0	4	0	2	0	0
34.99	transport.misc	6 (1.80%)	0	0	0	2	0	1	1	2
2.2	major CHO metabolism.degradation	5 (1.50%)	1	1	0	1	0	1	0	1
2.2.1	major CHO metabolism.degradation.sucrose	5 (1.50%)	1	1	0	1	0	1	0	1
2.2.1.3	major CHO metabolism.degradation.sucrose.invertases	5 (1.50%)	1	1	0	1	0	1	0	1
2.2.1.3.3	major CHO metabolism.degradation.sucrose.invertases.vacuolar	5 (1.50%)	1	1	0	1	0	1	0	1
20.1	stress.biotic	5 (1.50%)	0	0	2	2	0	1	0	0
34.2	transport.sugars	5 (1.50%)	1	0	2	0	0	0	1	1
17	hormone metabolism	4 (1.20%)	0	0	0	0	2	1	0	1
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	4 (1.20%)	1	0	1	0	1	0	0	1
27.3.67	RNA.regulation of transcription.putative transcription regulator	4 (1.20%)	0	1	0	0	1	1	1	0
27.3.69	RNA.regulation of transcription.SET-domain transcriptional regulator family	4 (1.20%)	0	0	1	1	0	1	0	1
28.1	DNA.synthesis/chromatin structure	4 (1.20%)	1	0	0	1	1	0	0	1
28.99	DNA.unspecified	4 (1.20%)	1	0	0	1	0	1	0	1
29.4	protein.postranslational modification	4 (1.20%)	1	0	0	0	0	3	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	4 (1.20%)	0	1	0	0	1	0	0	2
10.6	cell wall.degradation	3 (0.90%)	0	0	0	1	1	0	0	1
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	3 (0.90%)	0	0	0	1	1	0	0	1
16.10	secondary metabolism.simple phenols	3 (0.90%)	0	0	3	0	0	0	0	0
20.2.1	stress.abiotic.heat	3 (0.90%)	0	0	1	0	0	1	0	1
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	3 (0.90%)	0	0	0	2	0	1	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	3 (0.90%)	0	0	0	0	1	1	0	1
27.4	RNA.RNA binding	3 (0.90%)	1	0	0	0	0	0	1	1
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	3 (0.90%)	0	0	0	0	0	1	0	2
31.2	cell.division	3 (0.90%)	0	0	1	1	0	0	0	1
34.12	transport.metal	3 (0.90%)	0	0	1	1	1	0	0	0
34.14	transport.unspecified cations	3 (0.90%)	0	0	0	1	0	1	1	0
3	minor CHO metabolism	2 (0.60%)	1	0	1	0	0	0	0	0
3.2	minor CHO metabolism.trehalose	2 (0.60%)	1	0	1	0	0	0	0	0
11	lipid metabolism	2 (0.60%)	0	0	0	0	0	1	0	1
11.1	lipid metabolism.FA synthesis and FA elongation	2 (0.60%)	0	0	0	0	0	1	0	1
11.1.8	lipid metabolism.FA synthesis and FA elongation.acyl coa ligase	2 (0.60%)	0	0	0	0	0	1	0	1
16.2	secondary metabolism.phenylpropanoids	2 (0.60%)	0	0	0	1	0	1	0	0
16.2.1	secondary metabolism.phenylpropanoids.lignin biosynthesis	2 (0.60%)	0	0	0	1	0	1	0	0
16.2.1.10	secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD	2 (0.60%)	0	0	0	1	0	1	0	0
17.4	hormone metabolism.cytokinin	2 (0.60%)	0	0	0	0	2	0	0	0
17.4.2	hormone metabolism.cytokinin.signal transduction	2 (0.60%)	0	0	0	0	2	0	0	0
18	Co-factor and vitamine metabolism	2 (0.60%)	0	0	0	2	0	0	0	0
20.2.3	stress.abiotic.drought/salt	2 (0.60%)	0	0	1	1	0	0	0	0
26.2	misc.UDP glucosyl and glucoronyl transferases	2 (0.60%)	0	1	0	0	0	1	0	0
26.9	misc.glutathione S transferases	2 (0.60%)	0	0	1	0	0	1	0	0
27.1.1	RNA.processing.splicing	2 (0.60%)	0	0	0	1	1	0	0	0
27.1.19	RNA.processing.ribonucleases	2 (0.60%)	0	0	0	0	0	1	0	1
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	2 (0.60%)	0	0	1	1	0	0	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	2 (0.60%)	0	0	0	0	0	1	0	1
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	2 (0.60%)	0	0	0	0	2	0	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	2 (0.60%)	0	0	1	1	0	0	0	0
27.3.57	RNA.regulation of transcription.JUMONJI family	2 (0.60%)	0	0	0	0	1	1	0	0
29.1	protein.aa activation	2 (0.60%)	0	0	0	0	0	1	0	1
29.3	protein.targeting	2 (0.60%)	0	0	0	0	1	0	0	1
29.4.1	protein.postranslational modification.kinase	2 (0.60%)	0	0	0	0	0	2	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	2 (0.60%)	0	0	0	0	0	2	0	0
29.5.11	protein.degradation.ubiquitin	2 (0.60%)	0	0	0	0	1	1	0	0
29.5.2	protein.degradation.autophagy	2 (0.60%)	0	1	0	0	0	1	0	0
29.5.5	protein.degradation.serine protease	2 (0.60%)	0	0	0	0	1	1	0	0
3.2.3	minor CHO metabolism.trehalose.potential TPS/TPP	2 (0.60%)	1	0	1	0	0	0	0	0
30.1	signalling.in sugar and nutrient physiology	2 (0.60%)	0	1	1	0	0	0	0	0
30.11	signalling.light	2 (0.60%)	0	0	0	0	2	0	0	0
30.2	signalling.receptor kinases	2 (0.60%)	0	0	0	2	0	0	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	2 (0.60%)	0	0	0	2	0	0	0	0
31.3	cell.cycle	2 (0.60%)	0	0	0	1	0	0	0	1
34.1	transport.p- and v-ATPases	2 (0.60%)	1	0	0	0	1	0	0	0
34.16	transport.ABC transporters and multidrug resistance systems	2 (0.60%)	0	0	0	0	0	1	0	1
34.9	transport.metabolite transporters at the mitochondrial membrane	2 (0.60%)	0	0	0	0	1	0	0	1
1.1.1.1	PS.lightreaction.photosystem II.LHC-II	1 (0.30%)	0	0	0	1	0	0	0	0
4	glycolysis	1 (0.30%)	0	0	0	0	0	1	0	0
10.2	cell wall.cellulose synthesis	1 (0.30%)	0	0	0	0	0	1	0	0
10.2.2	cell wall.cellulose synthesis.COBRA	1 (0.30%)	0	0	0	0	0	1	0	0
10.7	cell wall.modification	1 (0.30%)	0	0	0	0	0	1	0	0
10.8	cell wall.pectin*esterases	1 (0.30%)	0	0	0	0	0	0	0	1
10.8.1	cell wall.pectin*esterases.PME	1 (0.30%)	0	0	0	0	0	0	0	1
13	amino acid metabolism	1 (0.30%)	0	0	0	0	1	0	0	0
13.1	amino acid metabolism.synthesis	1 (0.30%)	0	0	0	0	1	0	0	0
13.1.6	amino acid metabolism.synthesis.aromatic aa	1 (0.30%)	0	0	0	0	1	0	0	0
13.1.6.5	amino acid metabolism.synthesis.aromatic aa.tryptophan	1 (0.30%)	0	0	0	0	1	0	0	0
16.1	secondary metabolism.isoprenoids	1 (0.30%)	0	0	0	1	0	0	0	0
16.1.5	secondary metabolism.isoprenoids.terpenoids	1 (0.30%)	0	0	0	1	0	0	0	0
17.1	hormone metabolism.abscisic acid	1 (0.30%)	0	0	0	0	0	1	0	0
17.1.2	hormone metabolism.abscisic acid.signal transduction	1 (0.30%)	0	0	0	0	0	1	0	0
17.6.2	hormone metabolism.gibberelin.signal transduction	1 (0.30%)	0	0	0	0	0	0	0	1
2.1	major CHO metabolism.synthesis	1 (0.30%)	1	0	0	0	0	0	0	0
17.6	hormone metabolism.gibberelin	1 (0.30%)	0	0	0	0	0	0	0	1
2.1.2	major CHO metabolism.synthesis.starch	1 (0.30%)	1	0	0	0	0	0	0	0
2.1.2.1	major CHO metabolism.synthesis.starch.AGPase	1 (0.30%)	1	0	0	0	0	0	0	0
20.2.99	stress.abiotic.unspecified	1 (0.30%)	0	1	0	0	0	0	0	0
21	redox	1 (0.30%)	0	0	1	0	0	0	0	0
21.4	redox.glutaredoxins	1 (0.30%)	0	0	1	0	0	0	0	0
23	nucleotide metabolism	1 (0.30%)	0	1	0	0	0	0	0	0
23.3	nucleotide metabolism.salvage	1 (0.30%)	0	1	0	0	0	0	0	0
23.3.2	nucleotide metabolism.salvage.nucleoside kinases	1 (0.30%)	0	1	0	0	0	0	0	0
23.3.2.2	nucleotide metabolism.salvage.nucleoside kinases.uridine kinase	1 (0.30%)	0	1	0	0	0	0	0	0
26.10	misc.cytochrome P450	1 (0.30%)	0	0	0	1	0	0	0	0
26.11	misc.alcohol dehydrogenases	1 (0.30%)	1	0	0	0	0	0	0	0
26.12	misc.peroxidases	1 (0.30%)	0	0	0	1	0	0	0	0
26.13	misc.acid and other phosphatases	1 (0.30%)	1	0	0	0	0	0	0	0
26.7	misc.oxidases - copper, flavone etc	1 (0.30%)	0	0	0	0	0	1	0	0
27.2	RNA.transcription	1 (0.30%)	0	0	0	0	0	0	0	1
27.3.12	RNA.regulation of transcription.C3H zinc finger family	1 (0.30%)	0	0	0	1	0	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	1 (0.30%)	0	0	0	0	1	0	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	1 (0.30%)	0	0	0	0	0	1	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	1 (0.30%)	0	0	0	0	1	0	0	0
27.3.40	RNA.regulation of transcription.Aux/IAA family	1 (0.30%)	0	0	0	0	1	0	0	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	1 (0.30%)	0	0	0	0	0	0	1	0
27.3.5	RNA.regulation of transcription.ARR	1 (0.30%)	0	0	0	0	0	0	0	1
27.3.50	RNA.regulation of transcription.General Transcription	1 (0.30%)	0	0	0	0	0	0	0	1
27.3.66	RNA.regulation of transcription.Psudo ARR transcription factor family	1 (0.30%)	0	0	0	0	1	0	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	1 (0.30%)	1	0	0	0	0	0	0	0
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	1 (0.30%)	1	0	0	0	0	0	0	0
28.1.3.2.1	DNA.synthesis/chromatin structure.histone.core.H2A	1 (0.30%)	1	0	0	0	0	0	0	0
28.2	DNA.repair	1 (0.30%)	0	0	0	0	1	0	0	0
29.2	protein.synthesis	1 (0.30%)	0	0	0	0	1	0	0	0
29.2.3	protein.synthesis.initiation	1 (0.30%)	0	0	0	0	1	0	0	0
29.3.1	protein.targeting.nucleus	1 (0.30%)	0	0	0	0	0	0	0	1
29.3.4	protein.targeting.secretory pathway	1 (0.30%)	0	0	0	0	1	0	0	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	1 (0.30%)	0	0	0	0	1	0	0	0
29.5.11.3	protein.degradation.ubiquitin.E2	1 (0.30%)	0	0	0	0	0	1	0	0
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	1 (0.30%)	0	0	0	0	1	0	0	0
29.8	protein.assembly and cofactor ligation	1 (0.30%)	0	1	0	0	0	0	0	0
30.10	signalling.phosphorelay	1 (0.30%)	0	0	0	0	1	0	0	0
30.2.3	signalling.receptor kinases.leucine rich repeat III	1 (0.30%)	0	0	0	1	0	0	0	0
31.3.1	cell.cycle.peptidylprolyl isomerase	1 (0.30%)	0	0	0	1	0	0	0	0
34.1.1	transport.p- and v-ATPases.H+-transporting two-sector ATPase	1 (0.30%)	1	0	0	0	0	0	0	0
34.1.1.6	transport.p- and v-ATPases.H+-transporting two-sector ATPase.subunit H	1 (0.30%)	1	0	0	0	0	0	0	0
4.2	glycolysis.plastid branch	1 (0.30%)	0	0	0	0	0	1	0	0
31.4	cell.vesicle transport	1 (0.30%)	0	0	0	0	0	0	0	1
34.15	transport.potassium	1 (0.30%)	0	1	0	0	0	0	0	0
34.8	transport.metabolite transporters at the envelope membrane	1 (0.30%)	0	0	0	0	0	0	0	1
4.2.2	glycolysis.plastid branch.phosphoglucomutase (PGM)	1 (0.30%)	0	0	0	0	0	1	0	0