PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_592
Name: WRKY43;WRKY38;WRKY26
Description: Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function

#Associated genes: 24
#Associated GO terms: 159

Biological Process
Molecular Function
Cellular Component

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Molecular Function (back to top)

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GO	Description	#Associated genes	bra	egr	gma	ptr	ppe	sly	stu	vvi
GO:0005488	binding	12 (50.00%)	1	1	2	1	1	1	2	3
GO:0003677	DNA binding	6 (25.00%)	0	0	0	1	1	0	1	3
GO:1901363	heterocyclic compound binding	6 (25.00%)	0	0	0	1	1	0	1	3
GO:0003676	nucleic acid binding	6 (25.00%)	0	0	0	1	1	0	1	3
GO:0097159	organic cyclic compound binding	6 (25.00%)	0	0	0	1	1	0	1	3
GO:0005515	protein binding	5 (20.83%)	1	0	2	0	0	0	0	2
GO:0043169	cation binding	3 (12.50%)	0	0	2	0	0	0	0	1
GO:0003682	chromatin binding	3 (12.50%)	0	0	0	0	1	0	1	1
GO:0043167	ion binding	3 (12.50%)	0	0	2	0	0	0	0	1
GO:0008289	lipid binding	3 (12.50%)	0	1	0	0	0	1	1	0
GO:0046872	metal ion binding	3 (12.50%)	0	0	2	0	0	0	0	1
GO:0046914	transition metal ion binding	3 (12.50%)	0	0	2	0	0	0	0	1
GO:0008270	zinc ion binding	3 (12.50%)	0	0	2	0	0	0	0	1
GO:0003824	catalytic activity	2 (8.33%)	0	0	0	0	1	0	0	1
GO:0001071	nucleic acid binding transcription factor activity	2 (8.33%)	0	0	0	1	0	0	0	1
GO:0003700	sequence-specific DNA binding transcription factor activity	2 (8.33%)	0	0	0	1	0	0	0	1
GO:0008194	UDP-glycosyltransferase activity	1 (4.17%)	0	0	0	0	1	0	0	0
GO:0008375	acetylglucosaminyltransferase activity	1 (4.17%)	0	0	0	0	1	0	0	0
GO:0003830	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1 (4.17%)	0	0	0	0	1	0	0	0
GO:0052689	carboxylic ester hydrolase activity	1 (4.17%)	0	0	0	0	0	0	0	1
GO:0016787	hydrolase activity	1 (4.17%)	0	0	0	0	0	0	0	1
GO:0016788	hydrolase activity, acting on ester bonds	1 (4.17%)	0	0	0	0	0	0	0	1
GO:0016298	lipase activity	1 (4.17%)	0	0	0	0	0	0	0	1
GO:0046983	protein dimerization activity	1 (4.17%)	0	0	0	0	0	0	0	1
GO:0016740	transferase activity	1 (4.17%)	0	0	0	0	1	0	0	0
GO:0016757	transferase activity, transferring glycosyl groups	1 (4.17%)	0	0	0	0	1	0	0	0
GO:0016758	transferase activity, transferring hexosyl groups	1 (4.17%)	0	0	0	0	1	0	0	0
GO:0004806	triglyceride lipase activity	1 (4.17%)	0	0	0	0	0	0	0	1

Biological Process (back to top)

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GO	Description	#Associated genes	egr	ptr	ppe	sly	stu	vvi
GO:0044699	single-organism process	7 (29.17%)	1	0	2	1	1	2
GO:0008152	metabolic process	5 (20.83%)	0	1	1	0	0	3
GO:0044237	cellular metabolic process	4 (16.67%)	0	1	1	0	0	2
GO:0009987	cellular process	4 (16.67%)	0	1	1	0	0	2
GO:0071704	organic substance metabolic process	4 (16.67%)	0	1	1	0	0	2
GO:0044238	primary metabolic process	4 (16.67%)	0	1	1	0	0	2
GO:0009058	biosynthetic process	3 (12.50%)	0	1	1	0	0	1
GO:0044249	cellular biosynthetic process	3 (12.50%)	0	1	1	0	0	1
GO:0034645	cellular macromolecule biosynthetic process	3 (12.50%)	0	1	1	0	0	1
GO:0044260	cellular macromolecule metabolic process	3 (12.50%)	0	1	1	0	0	1
GO:0051234	establishment of localization	3 (12.50%)	1	0	0	1	1	0
GO:0010876	lipid localization	3 (12.50%)	1	0	0	1	1	0
GO:0006869	lipid transport	3 (12.50%)	1	0	0	1	1	0
GO:0051179	localization	3 (12.50%)	1	0	0	1	1	0
GO:0009059	macromolecule biosynthetic process	3 (12.50%)	0	1	1	0	0	1
GO:0033036	macromolecule localization	3 (12.50%)	1	0	0	1	1	0
GO:0043170	macromolecule metabolic process	3 (12.50%)	0	1	1	0	0	1
GO:1901576	organic substance biosynthetic process	3 (12.50%)	0	1	1	0	0	1
GO:0071702	organic substance transport	3 (12.50%)	1	0	0	1	1	0
GO:0050896	response to stimulus	3 (12.50%)	0	0	1	0	0	2
GO:0044765	single-organism transport	3 (12.50%)	1	0	0	1	1	0
GO:0006810	transport	3 (12.50%)	1	0	0	1	1	0
GO:0032774	RNA biosynthetic process	2 (8.33%)	0	1	0	0	0	1
GO:0016070	RNA metabolic process	2 (8.33%)	0	1	0	0	0	1
GO:0019438	aromatic compound biosynthetic process	2 (8.33%)	0	1	0	0	0	1
GO:0065007	biological regulation	2 (8.33%)	0	1	0	0	0	1
GO:0006725	cellular aromatic compound metabolic process	2 (8.33%)	0	1	0	0	0	1
GO:0044271	cellular nitrogen compound biosynthetic process	2 (8.33%)	0	1	0	0	0	1
GO:0034641	cellular nitrogen compound metabolic process	2 (8.33%)	0	1	0	0	0	1
GO:0032502	developmental process	2 (8.33%)	0	0	1	0	0	1
GO:0010467	gene expression	2 (8.33%)	0	1	0	0	0	1
GO:0018130	heterocycle biosynthetic process	2 (8.33%)	0	1	0	0	0	1
GO:0046483	heterocycle metabolic process	2 (8.33%)	0	1	0	0	0	1
GO:0007275	multicellular organismal development	2 (8.33%)	0	0	1	0	0	1
GO:0032501	multicellular organismal process	2 (8.33%)	0	0	1	0	0	1
GO:0006807	nitrogen compound metabolic process	2 (8.33%)	0	1	0	0	0	1
GO:0090304	nucleic acid metabolic process	2 (8.33%)	0	1	0	0	0	1
GO:0034654	nucleobase-containing compound biosynthetic process	2 (8.33%)	0	1	0	0	0	1
GO:0006139	nucleobase-containing compound metabolic process	2 (8.33%)	0	1	0	0	0	1
GO:1901362	organic cyclic compound biosynthetic process	2 (8.33%)	0	1	0	0	0	1
GO:1901360	organic cyclic compound metabolic process	2 (8.33%)	0	1	0	0	0	1
GO:0009791	post-embryonic development	2 (8.33%)	0	0	1	0	0	1
GO:2001141	regulation of RNA biosynthetic process	2 (8.33%)	0	1	0	0	0	1
GO:0051252	regulation of RNA metabolic process	2 (8.33%)	0	1	0	0	0	1
GO:0050789	regulation of biological process	2 (8.33%)	0	1	0	0	0	1
GO:0009889	regulation of biosynthetic process	2 (8.33%)	0	1	0	0	0	1
GO:0031326	regulation of cellular biosynthetic process	2 (8.33%)	0	1	0	0	0	1
GO:2000112	regulation of cellular macromolecule biosynthetic process	2 (8.33%)	0	1	0	0	0	1
GO:0031323	regulation of cellular metabolic process	2 (8.33%)	0	1	0	0	0	1
GO:0050794	regulation of cellular process	2 (8.33%)	0	1	0	0	0	1
GO:0010468	regulation of gene expression	2 (8.33%)	0	1	0	0	0	1
GO:0010556	regulation of macromolecule biosynthetic process	2 (8.33%)	0	1	0	0	0	1
GO:0060255	regulation of macromolecule metabolic process	2 (8.33%)	0	1	0	0	0	1
GO:0019222	regulation of metabolic process	2 (8.33%)	0	1	0	0	0	1
GO:0051171	regulation of nitrogen compound metabolic process	2 (8.33%)	0	1	0	0	0	1
GO:0019219	regulation of nucleobase-containing compound metabolic process	2 (8.33%)	0	1	0	0	0	1
GO:0080090	regulation of primary metabolic process	2 (8.33%)	0	1	0	0	0	1
GO:0006355	regulation of transcription, DNA-dependent	2 (8.33%)	0	1	0	0	0	1
GO:0009628	response to abiotic stimulus	2 (8.33%)	0	0	1	0	0	1
GO:0009416	response to light stimulus	2 (8.33%)	0	0	1	0	0	1
GO:0009314	response to radiation	2 (8.33%)	0	0	1	0	0	1
GO:0009639	response to red or far red light	2 (8.33%)	0	0	1	0	0	1
GO:0044707	single-multicellular organism process	2 (8.33%)	0	0	1	0	0	1
GO:0044767	single-organism developmental process	2 (8.33%)	0	0	1	0	0	1
GO:0044710	single-organism metabolic process	2 (8.33%)	0	0	1	0	0	1
GO:0006351	transcription, DNA-templated	2 (8.33%)	0	1	0	0	0	1
GO:0048856	anatomical structure development	1 (4.17%)	0	0	1	0	0	0
GO:1901137	carbohydrate derivative biosynthetic process	1 (4.17%)	0	0	1	0	0	0
GO:1901135	carbohydrate derivative metabolic process	1 (4.17%)	0	0	1	0	0	0
GO:0005975	carbohydrate metabolic process	1 (4.17%)	0	0	1	0	0	0
GO:0044267	cellular protein metabolic process	1 (4.17%)	0	0	1	0	0	0
GO:0006464	cellular protein modification process	1 (4.17%)	0	0	1	0	0	0
GO:0003006	developmental process involved in reproduction	1 (4.17%)	0	0	1	0	0	0
GO:0009790	embryo development	1 (4.17%)	0	0	1	0	0	0
GO:0009793	embryo development ending in seed dormancy	1 (4.17%)	0	0	1	0	0	0
GO:0010154	fruit development	1 (4.17%)	0	0	1	0	0	0
GO:0009101	glycoprotein biosynthetic process	1 (4.17%)	0	0	1	0	0	0
GO:0009100	glycoprotein metabolic process	1 (4.17%)	0	0	1	0	0	0
GO:0070085	glycosylation	1 (4.17%)	0	0	1	0	0	0
GO:0009630	gravitropism	1 (4.17%)	0	0	1	0	0	0
GO:0006629	lipid metabolic process	1 (4.17%)	0	0	0	0	0	1
GO:0043413	macromolecule glycosylation	1 (4.17%)	0	0	1	0	0	0
GO:0043412	macromolecule modification	1 (4.17%)	0	0	1	0	0	0
GO:0009640	photomorphogenesis	1 (4.17%)	0	0	0	0	0	1
GO:0015979	photosynthesis	1 (4.17%)	0	0	0	0	0	1
GO:0006487	protein N-linked glycosylation	1 (4.17%)	0	0	1	0	0	0
GO:0006486	protein glycosylation	1 (4.17%)	0	0	1	0	0	0
GO:0019538	protein metabolic process	1 (4.17%)	0	0	1	0	0	0
GO:0036211	protein modification process	1 (4.17%)	0	0	1	0	0	0
GO:0000003	reproduction	1 (4.17%)	0	0	1	0	0	0
GO:0022414	reproductive process	1 (4.17%)	0	0	1	0	0	0
GO:0048608	reproductive structure development	1 (4.17%)	0	0	1	0	0	0
GO:0061458	reproductive system development	1 (4.17%)	0	0	1	0	0	0
GO:0042221	response to chemical	1 (4.17%)	0	0	0	0	0	1
GO:0009605	response to external stimulus	1 (4.17%)	0	0	1	0	0	0
GO:0009629	response to gravity	1 (4.17%)	0	0	1	0	0	0
GO:0014070	response to organic cyclic compound	1 (4.17%)	0	0	0	0	0	1
GO:0010033	response to organic substance	1 (4.17%)	0	0	0	0	0	1
GO:1901700	response to oxygen-containing compound	1 (4.17%)	0	0	0	0	0	1
GO:0010114	response to red light	1 (4.17%)	0	0	1	0	0	0
GO:0009751	response to salicylic acid	1 (4.17%)	0	0	0	0	0	1
GO:0048316	seed development	1 (4.17%)	0	0	1	0	0	0
GO:0044702	single organism reproductive process	1 (4.17%)	0	0	1	0	0	0
GO:0044723	single-organism carbohydrate metabolic process	1 (4.17%)	0	0	1	0	0	0
GO:0044763	single-organism cellular process	1 (4.17%)	0	0	1	0	0	0
GO:0048731	system development	1 (4.17%)	0	0	1	0	0	0
GO:0009606	tropism	1 (4.17%)	0	0	1	0	0	0

Cellular Component (back to top)

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GO	Description	#Associated genes	egr	ppe	sly	stu	vvi
GO:0016020	membrane	5 (20.83%)	1	1	1	1	1
GO:0044425	membrane part	4 (16.67%)	1	0	1	1	1
GO:0031225	anchored to membrane	3 (12.50%)	1	0	1	1	0
GO:0005623	cell	3 (12.50%)	0	0	0	0	3
GO:0044464	cell part	3 (12.50%)	0	0	0	0	3
GO:0005622	intracellular	3 (12.50%)	0	0	0	0	3
GO:0043231	intracellular membrane-bounded organelle	3 (12.50%)	0	0	0	0	3
GO:0043229	intracellular organelle	3 (12.50%)	0	0	0	0	3
GO:0044424	intracellular part	3 (12.50%)	0	0	0	0	3
GO:0031224	intrinsic to membrane	3 (12.50%)	1	0	1	1	0
GO:0043227	membrane-bounded organelle	3 (12.50%)	0	0	0	0	3
GO:0043226	organelle	3 (12.50%)	0	0	0	0	3
GO:0005634	nucleus	2 (8.33%)	0	0	0	0	2
GO:0009507	chloroplast	1 (4.17%)	0	0	0	0	1
GO:0005737	cytoplasm	1 (4.17%)	0	0	0	0	1
GO:0044444	cytoplasmic part	1 (4.17%)	0	0	0	0	1
GO:0032991	macromolecular complex	1 (4.17%)	0	0	0	0	1
GO:0034357	photosynthetic membrane	1 (4.17%)	0	0	0	0	1
GO:0009521	photosystem	1 (4.17%)	0	0	0	0	1
GO:0009523	photosystem II	1 (4.17%)	0	0	0	0	1
GO:0009536	plastid	1 (4.17%)	0	0	0	0	1
GO:0043234	protein complex	1 (4.17%)	0	0	0	0	1
GO:0009579	thylakoid	1 (4.17%)	0	0	0	0	1
GO:0044436	thylakoid part	1 (4.17%)	0	0	0	0	1