PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_547
Name: AG BS in AP3
Description: The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects

#Associated genes: 12
#Associated GO terms: 189

Biological Process
Molecular Function
Cellular Component

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Biological Process (back to top)

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GO	Description	#Associated genes	cme	egr	gma	ptr	ppe	vvi
GO:0009987	cellular process	7 (58.33%)	1	1	2	1	1	1
GO:0044237	cellular metabolic process	6 (50.00%)	1	1	1	1	1	1
GO:0008152	metabolic process	6 (50.00%)	1	1	1	1	1	1
GO:0071704	organic substance metabolic process	6 (50.00%)	1	1	1	1	1	1
GO:0044238	primary metabolic process	6 (50.00%)	1	1	1	1	1	1
GO:0044699	single-organism process	6 (50.00%)	2	1	1	1	1	0
GO:0048856	anatomical structure development	5 (41.67%)	2	1	1	0	1	0
GO:0016043	cellular component organization	5 (41.67%)	1	1	2	0	1	0
GO:0071840	cellular component organization or biogenesis	5 (41.67%)	1	1	2	0	1	0
GO:0044255	cellular lipid metabolic process	5 (41.67%)	1	1	1	1	1	0
GO:0032502	developmental process	5 (41.67%)	2	1	1	0	1	0
GO:0046486	glycerolipid metabolic process	5 (41.67%)	1	1	1	1	1	0
GO:0006650	glycerophospholipid metabolic process	5 (41.67%)	1	1	1	1	1	0
GO:0006629	lipid metabolic process	5 (41.67%)	1	1	1	1	1	0
GO:0007275	multicellular organismal development	5 (41.67%)	2	1	1	0	1	0
GO:0032501	multicellular organismal process	5 (41.67%)	2	1	1	0	1	0
GO:0048513	organ development	5 (41.67%)	2	1	1	0	1	0
GO:0019637	organophosphate metabolic process	5 (41.67%)	1	1	1	1	1	0
GO:0006796	phosphate-containing compound metabolic process	5 (41.67%)	1	1	1	1	1	0
GO:0046488	phosphatidylinositol metabolic process	5 (41.67%)	1	1	1	1	1	0
GO:0006644	phospholipid metabolic process	5 (41.67%)	1	1	1	1	1	0
GO:0006793	phosphorus metabolic process	5 (41.67%)	1	1	1	1	1	0
GO:0044707	single-multicellular organism process	5 (41.67%)	2	1	1	0	1	0
GO:0044763	single-organism cellular process	5 (41.67%)	1	1	1	1	1	0
GO:0044767	single-organism developmental process	5 (41.67%)	2	1	1	0	1	0
GO:0044710	single-organism metabolic process	5 (41.67%)	1	1	1	1	1	0
GO:0048731	system development	5 (41.67%)	2	1	1	0	1	0
GO:0009653	anatomical structure morphogenesis	4 (33.33%)	1	1	1	0	1	0
GO:0048468	cell development	4 (33.33%)	1	1	1	0	1	0
GO:0030154	cell differentiation	4 (33.33%)	1	1	1	0	1	0
GO:0016049	cell growth	4 (33.33%)	1	1	1	0	1	0
GO:0048469	cell maturation	4 (33.33%)	1	1	1	0	1	0
GO:0000902	cell morphogenesis	4 (33.33%)	1	1	1	0	1	0
GO:0000904	cell morphogenesis involved in differentiation	4 (33.33%)	1	1	1	0	1	0
GO:0009932	cell tip growth	4 (33.33%)	1	1	1	0	1	0
GO:0032989	cellular component morphogenesis	4 (33.33%)	1	1	1	0	1	0
GO:0048869	cellular developmental process	4 (33.33%)	1	1	1	0	1	0
GO:0072583	clathrin-mediated endocytosis	4 (33.33%)	1	1	0	1	1	0
GO:0048588	developmental cell growth	4 (33.33%)	1	1	1	0	1	0
GO:0048589	developmental growth	4 (33.33%)	1	1	1	0	1	0
GO:0060560	developmental growth involved in morphogenesis	4 (33.33%)	1	1	1	0	1	0
GO:0021700	developmental maturation	4 (33.33%)	1	1	1	0	1	0
GO:0006897	endocytosis	4 (33.33%)	1	1	0	1	1	0
GO:0009913	epidermal cell differentiation	4 (33.33%)	1	1	1	0	1	0
GO:0008544	epidermis development	4 (33.33%)	1	1	1	0	1	0
GO:0030855	epithelial cell differentiation	4 (33.33%)	1	1	1	0	1	0
GO:0060429	epithelium development	4 (33.33%)	1	1	1	0	1	0
GO:0051234	establishment of localization	4 (33.33%)	1	1	0	1	1	0
GO:0040007	growth	4 (33.33%)	1	1	1	0	1	0
GO:0051179	localization	4 (33.33%)	1	1	0	1	1	0
GO:0006898	receptor-mediated endocytosis	4 (33.33%)	1	1	0	1	1	0
GO:0048364	root development	4 (33.33%)	1	1	1	0	1	0
GO:0010053	root epidermal cell differentiation	4 (33.33%)	1	1	1	0	1	0
GO:0080147	root hair cell development	4 (33.33%)	1	1	1	0	1	0
GO:0048765	root hair cell differentiation	4 (33.33%)	1	1	1	0	1	0
GO:0048768	root hair cell tip growth	4 (33.33%)	1	1	1	0	1	0
GO:0048767	root hair elongation	4 (33.33%)	1	1	1	0	1	0
GO:0010015	root morphogenesis	4 (33.33%)	1	1	1	0	1	0
GO:0022622	root system development	4 (33.33%)	1	1	1	0	1	0
GO:0043588	skin development	4 (33.33%)	1	1	1	0	1	0
GO:0009888	tissue development	4 (33.33%)	1	1	1	0	1	0
GO:0006810	transport	4 (33.33%)	1	1	0	1	1	0
GO:0010054	trichoblast differentiation	4 (33.33%)	1	1	1	0	1	0
GO:0048764	trichoblast maturation	4 (33.33%)	1	1	1	0	1	0
GO:0009826	unidimensional cell growth	4 (33.33%)	1	1	1	0	1	0
GO:0016192	vesicle-mediated transport	4 (33.33%)	1	1	0	1	1	0
GO:0032774	RNA biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0016070	RNA metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0048466	androecium development	1 (8.33%)	1	0	0	0	0	0
GO:0019438	aromatic compound biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0065007	biological regulation	1 (8.33%)	0	0	0	0	0	1
GO:0009058	biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0048440	carpel development	1 (8.33%)	1	0	0	0	0	0
GO:0071555	cell wall organization	1 (8.33%)	0	0	1	0	0	0
GO:0071554	cell wall organization or biogenesis	1 (8.33%)	0	0	1	0	0	0
GO:0006725	cellular aromatic compound metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0044249	cellular biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0034645	cellular macromolecule biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0044260	cellular macromolecule metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0044271	cellular nitrogen compound biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0034641	cellular nitrogen compound metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0003006	developmental process involved in reproduction	1 (8.33%)	1	0	0	0	0	0
GO:0045229	external encapsulating structure organization	1 (8.33%)	0	0	1	0	0	0
GO:0048437	floral organ development	1 (8.33%)	1	0	0	0	0	0
GO:0048438	floral whorl development	1 (8.33%)	1	0	0	0	0	0
GO:0009908	flower development	1 (8.33%)	1	0	0	0	0	0
GO:0010467	gene expression	1 (8.33%)	0	0	0	0	0	1
GO:0048467	gynoecium development	1 (8.33%)	1	0	0	0	0	0
GO:0018130	heterocycle biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0046483	heterocycle metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0009059	macromolecule biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0043170	macromolecule metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0006807	nitrogen compound metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0090304	nucleic acid metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0034654	nucleobase-containing compound biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0006139	nucleobase-containing compound metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:1901362	organic cyclic compound biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:1901360	organic cyclic compound metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:1901576	organic substance biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0048827	phyllome development	1 (8.33%)	1	0	0	0	0	0
GO:0009664	plant-type cell wall organization	1 (8.33%)	0	0	1	0	0	0
GO:0071669	plant-type cell wall organization or biogenesis	1 (8.33%)	0	0	1	0	0	0
GO:0009791	post-embryonic development	1 (8.33%)	1	0	0	0	0	0
GO:0048569	post-embryonic organ development	1 (8.33%)	1	0	0	0	0	0
GO:2001141	regulation of RNA biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0051252	regulation of RNA metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0050789	regulation of biological process	1 (8.33%)	0	0	0	0	0	1
GO:0009889	regulation of biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0031326	regulation of cellular biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:2000112	regulation of cellular macromolecule biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0031323	regulation of cellular metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0050794	regulation of cellular process	1 (8.33%)	0	0	0	0	0	1
GO:0010468	regulation of gene expression	1 (8.33%)	0	0	0	0	0	1
GO:0010556	regulation of macromolecule biosynthetic process	1 (8.33%)	0	0	0	0	0	1
GO:0060255	regulation of macromolecule metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0019222	regulation of metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0051171	regulation of nitrogen compound metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0019219	regulation of nucleobase-containing compound metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0080090	regulation of primary metabolic process	1 (8.33%)	0	0	0	0	0	1
GO:0006355	regulation of transcription, DNA-dependent	1 (8.33%)	0	0	0	0	0	1
GO:0000003	reproduction	1 (8.33%)	1	0	0	0	0	0
GO:0022414	reproductive process	1 (8.33%)	1	0	0	0	0	0
GO:0048608	reproductive structure development	1 (8.33%)	1	0	0	0	0	0
GO:0061458	reproductive system development	1 (8.33%)	1	0	0	0	0	0
GO:0009733	response to auxin	1 (8.33%)	0	0	1	0	0	0
GO:0042221	response to chemical	1 (8.33%)	0	0	1	0	0	0
GO:0009719	response to endogenous stimulus	1 (8.33%)	0	0	1	0	0	0
GO:0009725	response to hormone	1 (8.33%)	0	0	1	0	0	0
GO:0010033	response to organic substance	1 (8.33%)	0	0	1	0	0	0
GO:0050896	response to stimulus	1 (8.33%)	0	0	1	0	0	0
GO:0048367	shoot system development	1 (8.33%)	1	0	0	0	0	0
GO:0044702	single organism reproductive process	1 (8.33%)	1	0	0	0	0	0
GO:0048443	stamen development	1 (8.33%)	1	0	0	0	0	0
GO:0006351	transcription, DNA-templated	1 (8.33%)	0	0	0	0	0	1
GO:0010228	vegetative to reproductive phase transition of meristem	1 (8.33%)	1	0	0	0	0	0

Molecular Function (back to top)

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GO	Description	#Associated genes	cme	egr	gma	ptr	ppe	stu	vvi
GO:0003824	catalytic activity	7 (58.33%)	2	1	2	1	1	0	0
GO:0016740	transferase activity	6 (50.00%)	2	1	1	1	1	0	0
GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity	5 (41.67%)	1	1	1	1	1	0	0
GO:0016301	kinase activity	5 (41.67%)	1	1	1	1	1	0	0
GO:0016307	phosphatidylinositol phosphate kinase activity	5 (41.67%)	1	1	1	1	1	0	0
GO:0016773	phosphotransferase activity, alcohol group as acceptor	5 (41.67%)	1	1	1	1	1	0	0
GO:0016772	transferase activity, transferring phosphorus-containing groups	5 (41.67%)	1	1	1	1	1	0	0
GO:0005488	binding	4 (33.33%)	1	0	0	0	1	1	1
GO:0005515	protein binding	3 (25.00%)	1	0	0	0	1	1	0
GO:0003677	DNA binding	1 (8.33%)	0	0	0	0	0	0	1
GO:0008170	N-methyltransferase activity	1 (8.33%)	1	0	0	0	0	0	0
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	1 (8.33%)	1	0	0	0	0	0	0
GO:0016835	carbon-oxygen lyase activity	1 (8.33%)	0	0	1	0	0	0	0
GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	1 (8.33%)	0	0	1	0	0	0	0
GO:1901363	heterocyclic compound binding	1 (8.33%)	0	0	0	0	0	0	1
GO:0042054	histone methyltransferase activity	1 (8.33%)	1	0	0	0	0	0	0
GO:0042800	histone methyltransferase activity (H3-K4 specific)	1 (8.33%)	1	0	0	0	0	0	0
GO:0018024	histone-lysine N-methyltransferase activity	1 (8.33%)	1	0	0	0	0	0	0
GO:0008289	lipid binding	1 (8.33%)	0	0	0	0	0	0	1
GO:0016829	lyase activity	1 (8.33%)	0	0	1	0	0	0	0
GO:0016278	lysine N-methyltransferase activity	1 (8.33%)	1	0	0	0	0	0	0
GO:0008168	methyltransferase activity	1 (8.33%)	1	0	0	0	0	0	0
GO:0003676	nucleic acid binding	1 (8.33%)	0	0	0	0	0	0	1
GO:0001071	nucleic acid binding transcription factor activity	1 (8.33%)	0	0	0	0	0	0	1
GO:0097159	organic cyclic compound binding	1 (8.33%)	0	0	0	0	0	0	1
GO:0030570	pectate lyase activity	1 (8.33%)	0	0	1	0	0	0	0
GO:0046983	protein dimerization activity	1 (8.33%)	0	0	0	0	0	1	0
GO:0008276	protein methyltransferase activity	1 (8.33%)	1	0	0	0	0	0	0
GO:0016279	protein-lysine N-methyltransferase activity	1 (8.33%)	1	0	0	0	0	0	0
GO:0043565	sequence-specific DNA binding	1 (8.33%)	0	0	0	0	0	0	1
GO:0003700	sequence-specific DNA binding transcription factor activity	1 (8.33%)	0	0	0	0	0	0	1
GO:0016741	transferase activity, transferring one-carbon groups	1 (8.33%)	1	0	0	0	0	0	0

Cellular Component (back to top)

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GO	Description	#Associated genes	cme	egr	gma	ptr	ppe	vvi
GO:0005623	cell	7 (58.33%)	1	1	1	1	2	1
GO:0044464	cell part	7 (58.33%)	1	1	1	1	2	1
GO:0005622	intracellular	6 (50.00%)	1	1	1	0	2	1
GO:0044424	intracellular part	6 (50.00%)	1	1	1	0	2	1
GO:0045177	apical part of cell	5 (41.67%)	1	1	1	1	1	0
GO:0016324	apical plasma membrane	5 (41.67%)	1	1	1	1	1	0
GO:0071944	cell periphery	5 (41.67%)	1	1	1	1	1	0
GO:0005737	cytoplasm	5 (41.67%)	1	1	1	0	2	0
GO:0016020	membrane	5 (41.67%)	1	1	1	1	1	0
GO:0044425	membrane part	5 (41.67%)	1	1	1	1	1	0
GO:0005886	plasma membrane	5 (41.67%)	1	1	1	1	1	0
GO:0044459	plasma membrane part	5 (41.67%)	1	1	1	1	1	0
GO:0042995	cell projection	4 (33.33%)	1	1	0	1	1	0
GO:0090406	pollen tube	4 (33.33%)	1	1	0	1	1	0
GO:0043231	intracellular membrane-bounded organelle	2 (16.67%)	0	0	0	0	1	1
GO:0043229	intracellular organelle	2 (16.67%)	0	0	0	0	1	1
GO:0043227	membrane-bounded organelle	2 (16.67%)	0	0	0	0	1	1
GO:0005634	nucleus	2 (16.67%)	0	0	0	0	1	1
GO:0043226	organelle	2 (16.67%)	0	0	0	0	1	1
GO:0044444	cytoplasmic part	1 (8.33%)	0	0	0	0	1	0
GO:0042579	microbody	1 (8.33%)	0	0	0	0	1	0
GO:0005777	peroxisome	1 (8.33%)	0	0	0	0	1	0