PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_455
Name: AG binding site motif
Description: Nucleotide sequences recognized by the AGAMOUS MADS domain of Arabidopsis thaliana in vitro

#Associated genes: 139
#Associated MapMan terms: 75

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	35 (25.18%)	2	4	1	6	10	4	2	6
27.3	RNA.regulation of transcription	33 (23.74%)	2	4	1	6	10	3	2	5
29	protein	16 (11.51%)	0	0	1	6	6	3	0	0
29.4	protein.postranslational modification	10 (7.19%)	0	0	1	4	5	0	0	0
34	transport	9 (6.47%)	1	1	1	1	1	1	1	2
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	6 (4.32%)	0	0	0	3	3	0	0	0
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	5 (3.60%)	1	3	0	0	0	0	0	1
27.3.99	RNA.regulation of transcription.unclassified	5 (3.60%)	0	0	1	2	0	1	0	1
29.5	protein.degradation	5 (3.60%)	0	0	0	2	1	2	0	0
33	development	5 (3.60%)	0	1	0	0	0	0	0	4
17	hormone metabolism	4 (2.88%)	0	0	0	2	1	1	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	4 (2.88%)	0	0	0	0	2	0	2	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	4 (2.88%)	0	0	0	2	1	1	0	0
31	cell	4 (2.88%)	0	0	0	1	2	0	1	0
33.99	development.unspecified	4 (2.88%)	0	1	0	0	0	0	0	3
34.99	transport.misc	4 (2.88%)	0	0	1	0	1	1	0	1
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	3 (2.16%)	0	0	0	0	2	0	0	1
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	3 (2.16%)	0	1	0	0	1	1	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	3 (2.16%)	1	0	0	0	0	1	0	1
30	signalling	3 (2.16%)	1	0	0	0	1	0	1	0
31.1	cell.organisation	3 (2.16%)	0	0	0	0	2	0	1	0
17.1	hormone metabolism.abscisic acid	2 (1.44%)	0	0	0	2	0	0	0	0
17.1.2	hormone metabolism.abscisic acid.signal transduction	2 (1.44%)	0	0	0	2	0	0	0	0
26	misc	2 (1.44%)	0	1	1	0	0	0	0	0
27.4	RNA.RNA binding	2 (1.44%)	0	0	0	0	0	1	0	1
28	DNA	2 (1.44%)	0	0	1	1	0	0	0	0
28.1	DNA.synthesis/chromatin structure	2 (1.44%)	0	0	1	1	0	0	0	0
29.5.11	protein.degradation.ubiquitin	2 (1.44%)	0	0	0	0	1	1	0	0
34.2	transport.sugars	2 (1.44%)	1	1	0	0	0	0	0	0
34.9	transport.metabolite transporters at the mitochondrial membrane	2 (1.44%)	0	0	0	1	0	0	1	0
1	PS	1 (0.72%)	0	0	0	0	0	0	1	0
1.1	PS.lightreaction	1 (0.72%)	0	0	0	0	0	0	1	0
1.1.40	PS.lightreaction.cyclic electron flow-chlororespiration	1 (0.72%)	0	0	0	0	0	0	1	0
2	major CHO metabolism	1 (0.72%)	0	0	0	1	0	0	0	0
8	TCA / org transformation	1 (0.72%)	1	0	0	0	0	0	0	0
10	cell wall	1 (0.72%)	0	1	0	0	0	0	0	0
10.2	cell wall.cellulose synthesis	1 (0.72%)	0	1	0	0	0	0	0	0
11	lipid metabolism	1 (0.72%)	0	0	0	0	0	1	0	0
11.8	lipid metabolism.exotics(steroids, squalene etc)	1 (0.72%)	0	0	0	0	0	1	0	0
11.8.1	lipid metabolism.exotics (steroids, squalene etc).sphingolipids	1 (0.72%)	0	0	0	0	0	1	0	0
11.8.1.3	lipid metabolism.exotics (steroids, squalene etc).sphingolipids.ceramide glucosyltransferase	1 (0.72%)	0	0	0	0	0	1	0	0
17.2	hormone metabolism.auxin	1 (0.72%)	0	0	0	0	1	0	0	0
17.2.2	hormone metabolism.auxin.signal transduction	1 (0.72%)	0	0	0	0	1	0	0	0
17.7	hormone metabolism.jasmonate	1 (0.72%)	0	0	0	0	0	1	0	0
17.7.1	hormone metabolism.jasmonate.synthesis-degradation	1 (0.72%)	0	0	0	0	0	1	0	0
17.7.1.2	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	1 (0.72%)	0	0	0	0	0	1	0	0
2.1	major CHO metabolism.synthesis	1 (0.72%)	0	0	0	1	0	0	0	0
2.1.2	major CHO metabolism.synthesis.starch	1 (0.72%)	0	0	0	1	0	0	0	0
2.1.2.1	major CHO metabolism.synthesis.starch.AGPase	1 (0.72%)	0	0	0	1	0	0	0	0
21	redox	1 (0.72%)	0	0	0	0	0	0	0	1
21.4	redox.glutaredoxins	1 (0.72%)	0	0	0	0	0	0	0	1
23	nucleotide metabolism	1 (0.72%)	0	0	1	0	0	0	0	0
23.2	nucleotide metabolism.degradation	1 (0.72%)	0	0	1	0	0	0	0	0
26.16	misc.myrosinases-lectin-jacalin	1 (0.72%)	0	1	0	0	0	0	0	0
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	1 (0.72%)	0	0	1	0	0	0	0	0
27.2	RNA.transcription	1 (0.72%)	0	0	0	0	0	0	0	1
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (0.72%)	0	0	0	0	0	0	0	1
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	1 (0.72%)	0	0	0	1	0	0	0	0
27.3.67	RNA.regulation of transcription.putative transcription regulator	1 (0.72%)	0	0	0	0	1	0	0	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	1 (0.72%)	0	0	0	0	1	0	0	0
29.5.1	protein.degradation.subtilases	1 (0.72%)	0	0	0	0	0	1	0	0
29.5.11.3	protein.degradation.ubiquitin.E2	1 (0.72%)	0	0	0	0	0	1	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.72%)	0	0	0	0	0	1	0	0
29.5.11.5	protein.degradation.ubiquitin.ubiquitin protease	1 (0.72%)	0	0	0	0	1	0	0	0
29.7.9	protein.glycosylation.beta-1,2-xylosyltransferase(beta-1,2-XylT)	1 (0.72%)	0	0	0	0	0	1	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	1 (0.72%)	0	0	0	0	0	0	1	0
8.1	TCA / org transformation.TCA	1 (0.72%)	1	0	0	0	0	0	0	0
29.7	protein.glycosylation	1 (0.72%)	0	0	0	0	0	1	0	0
30.11	signalling.light	1 (0.72%)	0	0	0	0	1	0	0	0
30.2	signalling.receptor kinases	1 (0.72%)	0	0	0	0	0	0	1	0
30.8	signalling.misc	1 (0.72%)	1	0	0	0	0	0	0	0
31.3	cell.cycle	1 (0.72%)	0	0	0	1	0	0	0	0
33.3	development.squamosa promoter binding like (SPL)	1 (0.72%)	0	0	0	0	0	0	0	1
34.12	transport.metal	1 (0.72%)	0	0	0	0	0	0	0	1
8.1.9	TCA / org transformation.TCA.malate DH	1 (0.72%)	1	0	0	0	0	0	0	0