PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_373
Name: TATABOX1
Description: TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation

#Associated genes: 891
#Associated MapMan terms: 167

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	107 (12.01%)	4	11	29	15	16	19	6	7
17	hormone metabolism	91 (10.21%)	6	4	4	28	19	7	9	14
26	misc	83 (9.32%)	5	12	7	25	12	8	8	6
10	cell wall	82 (9.20%)	5	7	11	20	23	6	3	7
33	development	74 (8.31%)	3	6	17	8	20	6	5	9
20	stress	72 (8.08%)	4	5	11	22	16	3	7	4
10.6	cell wall.degradation	53 (5.95%)	5	7	6	10	15	3	2	5
27.1	RNA.processing	51 (5.72%)	0	0	19	5	8	13	4	2
27.1.19	RNA.processing.ribonucleases	51 (5.72%)	0	0	19	5	8	13	4	2
20.1	stress.biotic	48 (5.39%)	3	4	10	15	8	3	2	3
33.1	development.storage proteins	48 (5.39%)	2	2	11	4	18	5	3	3
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	47 (5.27%)	3	5	6	10	14	3	1	5
27.3	RNA.regulation of transcription	38 (4.26%)	2	7	7	8	6	5	0	3
17.5	hormone metabolism.ethylene	31 (3.48%)	2	0	2	10	5	3	4	5
10.7	cell wall.modification	29 (3.25%)	0	0	5	10	8	3	1	2
33.99	development.unspecified	25 (2.81%)	1	4	5	4	2	1	2	6
20.2	stress.abiotic	24 (2.69%)	1	1	1	7	8	0	5	1
16	secondary metabolism	22 (2.47%)	1	4	3	2	4	2	2	4
26.10	misc.cytochrome P450	22 (2.47%)	1	3	4	6	1	3	3	1
17.5.1	hormone metabolism.ethylene.synthesis-degradation	21 (2.36%)	1	0	1	7	2	2	4	4
26.12	misc.peroxidases	21 (2.36%)	1	3	1	11	2	1	2	0
17.2	hormone metabolism.auxin	17 (1.91%)	2	2	0	8	2	0	0	3
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	17 (1.91%)	2	2	0	8	2	0	0	3
34	transport	17 (1.91%)	4	5	1	4	0	3	0	0
17.6	hormone metabolism.gibberelin	15 (1.68%)	0	0	2	3	5	1	2	2
17.6.3	hormone metabolism.gibberelin.induced-regulated-responsive-activated	15 (1.68%)	0	0	2	3	5	1	2	2
17.7	hormone metabolism.jasmonate	15 (1.68%)	1	0	0	5	5	2	1	1
17.7.1	hormone metabolism.jasmonate.synthesis-degradation	15 (1.68%)	1	0	0	5	5	2	1	1
17.7.1.2	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	15 (1.68%)	1	0	0	5	5	2	1	1
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	15 (1.68%)	0	2	3	4	4	1	0	1
27.2	RNA.transcription	14 (1.57%)	2	3	3	1	1	1	1	2
11	lipid metabolism	13 (1.46%)	3	2	1	0	6	1	0	0
13	amino acid metabolism	12 (1.35%)	0	0	0	3	6	1	1	1
13.1	amino acid metabolism.synthesis	12 (1.35%)	0	0	0	3	6	1	1	1
16.1	secondary metabolism.isoprenoids	12 (1.35%)	0	2	3	1	1	0	2	3
3	minor CHO metabolism	11 (1.23%)	1	0	3	1	1	3	2	0
20.2.1	stress.abiotic.heat	11 (1.23%)	1	0	1	0	5	0	3	1
11.9	lipid metabolism.lipid degradation	10 (1.12%)	2	2	1	0	4	1	0	0
28	DNA	10 (1.12%)	1	2	1	1	2	2	1	0
16.1.5	secondary metabolism.isoprenoids.terpenoids	9 (1.01%)	0	1	2	0	1	0	2	3
17.5.2	hormone metabolism.ethylene.signal transduction	9 (1.01%)	1	0	1	3	2	1	0	1
20.2.99	stress.abiotic.unspecified	9 (1.01%)	0	0	0	7	1	0	1	0
26.11	misc.alcohol dehydrogenases	9 (1.01%)	0	1	0	0	6	0	0	2
26.13	misc.acid and other phosphatases	9 (1.01%)	0	0	0	8	0	1	0	0
29	protein	9 (1.01%)	0	2	1	3	1	2	0	0
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	8 (0.90%)	0	3	1	2	0	1	0	1
3.4	minor CHO metabolism.myo-inositol	8 (0.90%)	1	0	2	0	1	2	2	0
29.5	protein.degradation	8 (0.90%)	0	2	1	3	0	2	0	0
34.2	transport.sugars	8 (0.90%)	2	4	0	2	0	0	0	0
34.2.1	transport.sugars.sucrose	8 (0.90%)	2	4	0	2	0	0	0	0
13.1.3	amino acid metabolism.synthesis.aspartate family	7 (0.79%)	0	0	0	1	4	1	0	1
26.21	misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	7 (0.79%)	3	2	0	0	0	0	1	1
3.4.4	minor CHO metabolism.myo-inositol.myo inositol oxygenases	7 (0.79%)	1	0	2	0	1	1	2	0
10.6.1	cell wall.degradation.cellulases and beta -1,4-glucanases	6 (0.67%)	2	2	0	0	1	0	1	0
11.9.3	lipid metabolism.lipid degradation.lysophospholipases	6 (0.67%)	1	2	0	0	2	1	0	0
11.9.3.2	lipid metabolism.lipid degradation.lysophospholipases.carboxylesterase	6 (0.67%)	1	2	0	0	2	1	0	0
17.4	hormone metabolism.cytokinin	6 (0.67%)	0	1	0	1	0	0	2	2
17.4.1	hormone metabolism.cytokinin.synthesis-degradation	6 (0.67%)	0	1	0	1	0	0	2	2
21	redox	6 (0.67%)	1	1	0	3	0	1	0	0
21.4	redox.glutaredoxins	6 (0.67%)	1	1	0	3	0	1	0	0
23	nucleotide metabolism	6 (0.67%)	1	0	0	3	1	1	0	0
28.99	DNA.unspecified	6 (0.67%)	1	2	1	0	1	1	0	0
31	cell	6 (0.67%)	1	0	0	0	2	0	1	2
13.1.1	amino acid metabolism.synthesis.central amino acid metabolism	5 (0.56%)	0	0	0	2	2	0	1	0
13.1.1.1	amino acid metabolism.synthesis.central amino acid metabolism.GABA	5 (0.56%)	0	0	0	2	2	0	1	0
13.1.1.1.1	amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase	5 (0.56%)	0	0	0	2	2	0	1	0
16.2	secondary metabolism.phenylpropanoids	5 (0.56%)	0	1	0	1	1	2	0	0
17.1	hormone metabolism.abscisic acid	5 (0.56%)	1	1	0	0	2	0	0	1
17.1.1	hormone metabolism.abscisic acid.synthesis-degradation	5 (0.56%)	1	1	0	0	2	0	0	1
26.7	misc.oxidases - copper, flavone etc	5 (0.56%)	0	0	1	0	0	1	1	2
27.3.99	RNA.regulation of transcription.unclassified	5 (0.56%)	1	1	0	2	0	0	0	1
29.5.3	protein.degradation.cysteine protease	5 (0.56%)	0	2	1	1	0	1	0	0
13.1.3.4	amino acid metabolism.synthesis.aspartate family.methionine	4 (0.45%)	0	0	0	1	3	0	0	0
26.19	misc.plastocyanin-like	4 (0.45%)	0	0	1	0	0	2	1	0
26.3	misc.gluco-, galacto- and mannosidases	4 (0.45%)	0	3	0	0	1	0	0	0
27.4	RNA.RNA binding	4 (0.45%)	0	1	0	1	1	0	1	0
28.1	DNA.synthesis/chromatin structure	4 (0.45%)	0	0	0	1	1	1	1	0
28.1.3	DNA.synthesis/chromatin structure.histone	4 (0.45%)	0	0	0	1	1	1	1	0
30	signalling	4 (0.45%)	0	0	1	1	0	1	1	0
34.6	transport.sulphate	4 (0.45%)	1	1	0	0	0	2	0	0
11.9.2	lipid metabolism.lipid degradation.lipases	3 (0.34%)	0	0	1	0	2	0	0	0
13.1.3.1	amino acid metabolism.synthesis.aspartate family.asparagine	3 (0.34%)	0	0	0	0	1	1	0	1
20.1.7	stress.biotic.PR-proteins	3 (0.34%)	0	0	0	2	0	1	0	0
20.1.7.6	stress.biotic.PR-proteins.proteinase inhibitors	3 (0.34%)	0	0	0	2	0	1	0	0
20.1.7.6.1	stress.biotic.PR-proteins.proteinase inhibitors.trypsin inhibitor	3 (0.34%)	0	0	0	2	0	1	0	0
22	polyamine metabolism	3 (0.34%)	1	2	0	0	0	0	0	0
22.1	polyamine metabolism.synthesis	3 (0.34%)	1	2	0	0	0	0	0	0
22.1.2	polyamine metabolism.synthesis.SAM decarboxylase	3 (0.34%)	1	2	0	0	0	0	0	0
23.3	nucleotide metabolism.salvage	3 (0.34%)	0	0	0	1	1	1	0	0
23.3.1	nucleotide metabolism.salvage.phosphoribosyltransferases	3 (0.34%)	0	0	0	1	1	1	0	0
23.3.1.1	nucleotide metabolism.salvage.phosphoribosyltransferases.aprt	3 (0.34%)	0	0	0	1	1	1	0	0
26.3.4	misc.gluco-, galacto- and mannosidases.endoglucanase	3 (0.34%)	0	2	0	0	1	0	0	0
27.3.27	RNA.regulation of transcription.NAC domain transcription factor family	3 (0.34%)	0	0	3	0	0	0	0	0
3.1	minor CHO metabolism.raffinose family	3 (0.34%)	0	0	1	1	0	1	0	0
3.1.2	minor CHO metabolism.raffinose family.raffinose synthases	3 (0.34%)	0	0	1	1	0	1	0	0
30.1	signalling.in sugar and nutrient physiology	3 (0.34%)	0	0	1	1	0	0	1	0
31.4	cell.vesicle transport	3 (0.34%)	1	0	0	0	0	0	1	1
2	major CHO metabolism	2 (0.22%)	0	0	0	0	0	2	0	0
11.8	lipid metabolism.exotics(steroids, squalene etc)	2 (0.22%)	1	0	0	0	1	0	0	0
13.1.3.1.1	amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase	2 (0.22%)	0	0	0	0	1	0	0	1
16.1.2	secondary metabolism.isoprenoids.mevalonate pathway	2 (0.22%)	0	1	1	0	0	0	0	0
16.1.2.3	secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA reductase	2 (0.22%)	0	1	1	0	0	0	0	0
16.4	secondary metabolism.N misc	2 (0.22%)	1	0	0	0	1	0	0	0
16.4.1	secondary metabolism.N misc.alkaloid-like	2 (0.22%)	1	0	0	0	1	0	0	0
16.8	secondary metabolism.flavonoids	2 (0.22%)	0	1	0	0	1	0	0	0
16.8.3	secondary metabolism.flavonoids.dihydroflavonols	2 (0.22%)	0	1	0	0	1	0	0	0
16.8.3.1	secondary metabolism.flavonoids.dihydroflavonols.dihydroflavonol 4-reductase	2 (0.22%)	0	1	0	0	1	0	0	0
17.8	hormone metabolism.salicylic acid	2 (0.22%)	0	0	0	1	0	1	0	0
17.8.1	hormone metabolism.salicylic acid.synthesis-degradation	2 (0.22%)	0	0	0	1	0	1	0	0
20.2.2	stress.abiotic.cold	2 (0.22%)	0	1	0	0	0	0	1	0
20.2.4	stress.abiotic.touch/wounding	2 (0.22%)	0	0	0	0	2	0	0	0
23.2	nucleotide metabolism.degradation	2 (0.22%)	0	0	0	2	0	0	0	0
26.24	misc.GCN5-related N-acetyltransferase	2 (0.22%)	0	0	0	0	2	0	0	0
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	2 (0.22%)	0	0	0	0	0	1	0	1
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	2 (0.22%)	1	1	0	0	0	0	0	0
3.1.2.1	minor CHO metabolism.raffinose family.raffinose synthases.known	2 (0.22%)	0	0	1	0	0	1	0	0
3.1.2.2	minor CHO metabolism.raffinose family.raffinose synthases.putative	2 (0.22%)	0	0	0	1	0	1	0	0
31.2	cell.division	2 (0.22%)	0	0	0	0	1	0	0	1
34.13	transport.peptides and oligopeptides	2 (0.22%)	0	0	1	1	0	0	0	0
34.19	transport.Major Intrinsic Proteins	2 (0.22%)	1	0	0	0	0	1	0	0
1	PS	1 (0.11%)	0	0	0	0	0	1	0	0
1.3	PS.calvin cycle	1 (0.11%)	0	0	0	0	0	1	0	0
1.3.6	PS.calvin cycle.aldolase	1 (0.11%)	0	0	0	0	0	1	0	0
11.3	lipid metabolism.Phospholipid synthesis	1 (0.11%)	0	0	0	0	1	0	0	0
11.9.2.1	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	1 (0.11%)	0	0	1	0	0	0	0	0
11.9.4	lipid metabolism.lipid degradation.beta-oxidation	1 (0.11%)	1	0	0	0	0	0	0	0
11.9.4.13	lipid metabolism.lipid degradation.beta-oxidation.acyl CoA reductase	1 (0.11%)	1	0	0	0	0	0	0	0
13.1.3.4.2	amino acid metabolism.synthesis.aspartate family.methionine.cystathionine beta-lyase	1 (0.11%)	0	0	0	0	1	0	0	0
16.1.1	secondary metabolism.isoprenoids.non-mevalonate pathway	1 (0.11%)	0	0	0	1	0	0	0	0
16.1.1.2	secondary metabolism.isoprenoids.non-mevalonate pathway.DXR	1 (0.11%)	0	0	0	1	0	0	0	0
17.5.1.2	hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate oxidase	1 (0.11%)	1	0	0	0	0	0	0	0
17.5.3	hormone metabolism.ethylene.induced-regulated-responsive-activated	1 (0.11%)	0	0	0	0	1	0	0	0
2.1	major CHO metabolism.synthesis	1 (0.11%)	0	0	0	0	0	1	0	0
2.1.2	major CHO metabolism.synthesis.starch	1 (0.11%)	0	0	0	0	0	1	0	0
2.1.2.1	major CHO metabolism.synthesis.starch.AGPase	1 (0.11%)	0	0	0	0	0	1	0	0
2.2	major CHO metabolism.degradation	1 (0.11%)	0	0	0	0	0	1	0	0
15.2	metal handling.binding, chelation and storage	1 (0.11%)	0	0	0	0	0	1	0	0
16.10	secondary metabolism.simple phenols	1 (0.11%)	0	0	0	0	0	0	0	1
2.2.1	major CHO metabolism.degradation.sucrose	1 (0.11%)	0	0	0	0	0	1	0	0
2.2.1.3	major CHO metabolism.degradation.sucrose.invertases	1 (0.11%)	0	0	0	0	0	1	0	0
2.2.1.3.1	major CHO metabolism.degradation.sucrose.invertases.neutral	1 (0.11%)	0	0	0	0	0	1	0	0
8	TCA / org transformation	1 (0.11%)	0	0	0	0	1	0	0	0
15	metal handling	1 (0.11%)	0	0	0	0	0	1	0	0
23.4	nucleotide metabolism.phosphotransfer and pyrophosphatases	1 (0.11%)	1	0	0	0	0	0	0	0
23.4.99	nucleotide metabolism.phosphotransfer and pyrophosphatases.misc	1 (0.11%)	1	0	0	0	0	0	0	0
27.3.15	RNA.regulation of transcription.CCAAT box binding factor family, HAP3	1 (0.11%)	0	0	0	0	1	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	1 (0.11%)	0	0	0	0	0	1	0	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (0.11%)	0	0	0	1	0	0	0	0
27.3.46	RNA.regulation of transcription.DNA methyltransferases	1 (0.11%)	0	0	0	1	0	0	0	0
27.3.50	RNA.regulation of transcription.General Transcription	1 (0.11%)	0	0	0	0	0	1	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	1 (0.11%)	0	0	0	0	1	0	0	0
29.2.1.2.2.10	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10	1 (0.11%)	0	0	0	0	1	0	0	0
29.4	protein.postranslational modification	1 (0.11%)	0	0	0	0	1	0	0	0
29.5.1	protein.degradation.subtilases	1 (0.11%)	0	0	0	0	0	1	0	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	1 (0.11%)	0	0	0	1	0	0	0	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	1 (0.11%)	0	0	0	0	1	0	0	0
29.5.9	protein.degradation.AAA type	1 (0.11%)	0	0	0	1	0	0	0	0
3.4.3	minor CHO metabolism.myo-inositol.InsP Synthases	1 (0.11%)	0	0	0	0	0	1	0	0
30.1.1	signalling.in sugar and nutrient physiology	1 (0.11%)	0	0	0	0	0	0	1	0
34.19.1	transport.Major Intrinsic Proteins.PIP	1 (0.11%)	1	0	0	0	0	0	0	0
34.19.2	transport.Major Intrinsic Proteins.TIP	1 (0.11%)	0	0	0	0	0	1	0	0
8.2	TCA / org transformation.other organic acid transformations	1 (0.11%)	0	0	0	0	1	0	0	0
30.3	signalling.calcium	1 (0.11%)	0	0	0	0	0	1	0	0
31.1	cell.organisation	1 (0.11%)	0	0	0	0	1	0	0	0
33.2	development.late embryogenesis abundant	1 (0.11%)	0	0	1	0	0	0	0	0
34.12	transport.metal	1 (0.11%)	0	0	0	1	0	0	0	0
8.2.11	TCA / org transformation.other organic acid transformatons.atp-citrate lyase	1 (0.11%)	0	0	0	0	1	0	0	0