PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Motif_278
Name: CELLCYCLESC
Description: cell cycle box found in URS2 (-940/-200) of HO gene of S.cerevisiae; cell-cycle-specific activation of transcription

#Associated genes: 508
#Associated MapMan terms: 186

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MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	99 (19.49%)	10	8	7	33	14	15	6	6
27.3	RNA.regulation of transcription	90 (17.72%)	8	8	6	30	14	13	5	6
29	protein	39 (7.68%)	4	2	3	11	7	7	1	4
30	signalling	25 (4.92%)	1	3	5	4	7	3	0	2
31	cell	24 (4.72%)	1	1	3	5	7	2	2	3
34	transport	24 (4.72%)	3	0	3	2	6	4	0	6
29.4	protein.postranslational modification	21 (4.13%)	1	2	1	6	5	4	0	2
26	misc	20 (3.94%)	6	0	1	3	4	3	2	1
31.1	cell.organisation	17 (3.35%)	1	0	1	4	5	2	1	3
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	15 (2.95%)	1	1	1	6	2	1	2	1
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	15 (2.95%)	2	1	1	7	2	1	0	1
20	stress	13 (2.56%)	1	1	3	2	6	0	0	0
33	development	13 (2.56%)	1	0	0	4	4	2	1	1
29.4.1	protein.postranslational modification.kinase	12 (2.36%)	0	2	1	3	3	3	0	0
33.99	development.unspecified	12 (2.36%)	1	0	0	4	3	2	1	1
20.1	stress.biotic	10 (1.97%)	1	1	3	2	3	0	0	0
27.3.30	RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family	10 (1.97%)	1	2	0	4	0	2	0	1
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	10 (1.97%)	2	0	2	2	0	2	2	0
17	hormone metabolism	9 (1.77%)	0	0	2	1	2	0	1	3
27.3.99	RNA.regulation of transcription.unclassified	9 (1.77%)	0	1	0	3	3	1	0	1
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	9 (1.77%)	0	2	0	2	2	3	0	0
26.10	misc.cytochrome P450	8 (1.57%)	4	0	0	0	2	1	0	1
30.5	signalling.G-proteins	8 (1.57%)	1	2	1	0	2	0	0	2
1	PS	7 (1.38%)	1	0	1	3	0	1	1	0
10	cell wall	7 (1.38%)	2	0	1	0	0	1	0	3
30.3	signalling.calcium	7 (1.38%)	0	1	1	2	2	1	0	0
23	nucleotide metabolism	6 (1.18%)	0	0	0	4	0	0	1	1
28	DNA	6 (1.18%)	1	0	0	3	1	0	0	1
28.1	DNA.synthesis/chromatin structure	6 (1.18%)	1	0	0	3	1	0	0	1
29.5	protein.degradation	6 (1.18%)	0	0	2	2	0	2	0	0
34.20	transport.porins	6 (1.18%)	0	0	1	0	2	1	0	2
11	lipid metabolism	5 (0.98%)	0	0	0	1	2	0	0	2
26.28	misc.GDSL-motif lipase	5 (0.98%)	2	0	0	1	0	1	1	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	5 (0.98%)	1	0	0	2	1	1	0	0
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	5 (0.98%)	0	0	1	3	0	1	0	0
29.3	protein.targeting	5 (0.98%)	2	0	0	1	0	1	0	1
34.15	transport.potassium	5 (0.98%)	1	0	0	1	1	0	0	2
34.3	transport.amino acids	5 (0.98%)	0	0	2	0	1	0	0	2
1.3	PS.calvin cycle	4 (0.79%)	0	0	1	3	0	0	0	0
11.1	lipid metabolism.FA synthesis and FA elongation	4 (0.79%)	0	0	0	1	2	0	0	1
17.2	hormone metabolism.auxin	4 (0.79%)	0	0	0	0	2	0	0	2
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	4 (0.79%)	0	1	0	0	2	1	0	0
1.1	PS.lightreaction	3 (0.59%)	1	0	0	0	0	1	1	0
10.1	cell wall.precursor synthesis	3 (0.59%)	1	0	0	0	0	1	0	1
10.1.5	cell wall.precursor synthesis.UXS	3 (0.59%)	1	0	0	0	0	1	0	1
16	secondary metabolism	3 (0.59%)	1	0	1	0	1	0	0	0
20.2	stress.abiotic	3 (0.59%)	0	0	0	0	3	0	0	0
23.3	nucleotide metabolism.salvage	3 (0.59%)	0	0	0	2	0	0	0	1
23.4	nucleotide metabolism.phosphotransfer and pyrophosphatases	3 (0.59%)	0	0	0	2	0	0	1	0
23.4.10	nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase	3 (0.59%)	0	0	0	2	0	0	1	0
26.7	misc.oxidases - copper, flavone etc	3 (0.59%)	0	0	1	1	1	0	0	0
27.1	RNA.processing	3 (0.59%)	0	0	0	1	0	1	1	0
27.2	RNA.transcription	3 (0.59%)	2	0	0	1	0	0	0	0
27.3.22	RNA.regulation of transcription.HB,Homeobox transcription factor family	3 (0.59%)	0	0	0	0	0	1	1	1
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	3 (0.59%)	0	0	0	0	2	1	0	0
27.3.35	RNA.regulation of transcription.bZIP transcription factor family	3 (0.59%)	1	0	0	0	1	1	0	0
27.4	RNA.RNA binding	3 (0.59%)	0	0	1	1	0	1	0	0
29.8	protein.assembly and cofactor ligation	3 (0.59%)	1	0	0	0	1	0	1	0
30.4	signalling.phosphinositides	3 (0.59%)	0	0	1	1	0	1	0	0
31.2	cell.division	3 (0.59%)	0	1	1	1	0	0	0	0
1.1.1	PS.lightreaction.photosystem II	2 (0.39%)	1	0	0	0	0	1	0	0
1.1.1.2	PS.lightreaction.photosystem II.PSII polypeptide subunits	2 (0.39%)	1	0	0	0	0	1	0	0
1.3.6	PS.calvin cycle.aldolase	2 (0.39%)	0	0	0	2	0	0	0	0
2	major CHO metabolism	2 (0.39%)	0	0	2	0	0	0	0	0
10.2	cell wall.cellulose synthesis	2 (0.39%)	0	0	0	0	0	0	0	2
10.2.2	cell wall.cellulose synthesis.COBRA	2 (0.39%)	0	0	0	0	0	0	0	2
11.1.10	lipid metabolism.FA synthesis and FA elongation.beta ketoacyl CoA synthase	2 (0.39%)	0	0	0	0	2	0	0	0
2.2	major CHO metabolism.degradation	2 (0.39%)	0	0	2	0	0	0	0	0
12	N-metabolism	2 (0.39%)	0	1	0	0	1	0	0	0
12.4	N-metabolism.misc	2 (0.39%)	0	1	0	0	1	0	0	0
13	amino acid metabolism	2 (0.39%)	1	0	0	0	1	0	0	0
16.2	secondary metabolism.phenylpropanoids	2 (0.39%)	0	0	1	0	1	0	0	0
17.2.2	hormone metabolism.auxin.signal transduction	2 (0.39%)	0	0	0	0	1	0	0	1
17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	2 (0.39%)	0	0	0	0	1	0	0	1
20.2.1	stress.abiotic.heat	2 (0.39%)	0	0	0	0	2	0	0	0
23.3.1	nucleotide metabolism.salvage.phosphoribosyltransferases	2 (0.39%)	0	0	0	2	0	0	0	0
23.3.1.3	nucleotide metabolism.salvage.phosphoribosyltransferases.upp	2 (0.39%)	0	0	0	2	0	0	0	0
25	C1-metabolism	2 (0.39%)	0	0	1	0	0	1	0	0
25.5	C1-metabolism.Methylenetetrahydrofolate dehydrogenase & Methenyltetrahydrofolate cyclohydrolase	2 (0.39%)	0	0	1	0	0	1	0	0
27.3.21	RNA.regulation of transcription.GRAS transcription factor family	2 (0.39%)	0	0	0	2	0	0	0	0
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	2 (0.39%)	0	0	1	1	0	0	0	0
27.3.53	RNA.regulation of transcription.High mobility group (HMG) family	2 (0.39%)	0	1	0	0	0	0	0	1
27.3.66	RNA.regulation of transcription.Psudo ARR transcription factor family	2 (0.39%)	1	0	0	0	1	0	0	0
27.3.69	RNA.regulation of transcription.SET-domain transcriptional regulator family	2 (0.39%)	1	0	0	0	1	0	0	0
27.3.8	RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family	2 (0.39%)	0	0	1	0	0	1	0	0
28.1.3	DNA.synthesis/chromatin structure.histone	2 (0.39%)	0	0	0	2	0	0	0	0
29.2	protein.synthesis	2 (0.39%)	0	0	0	1	0	0	0	1
29.3.1	protein.targeting.nucleus	2 (0.39%)	1	0	0	1	0	0	0	0
29.3.4	protein.targeting.secretory pathway	2 (0.39%)	1	0	0	0	0	1	0	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	2 (0.39%)	1	0	0	0	0	1	0	0
30.6	signalling.MAP kinases	2 (0.39%)	0	0	1	1	0	0	0	0
30.7	signalling.14-3-3 proteins	2 (0.39%)	0	0	0	0	2	0	0	0
31.3	cell.cycle	2 (0.39%)	0	0	1	0	0	0	1	0
31.4	cell.vesicle transport	2 (0.39%)	0	0	0	0	2	0	0	0
34.7	transport.phosphate	2 (0.39%)	1	0	0	1	0	0	0	0
34.9	transport.metabolite transporters at the mitochondrial membrane	2 (0.39%)	1	0	0	0	0	1	0	0
34.99	transport.misc	2 (0.39%)	0	0	0	0	2	0	0	0
1.1.2	PS.lightreaction.photosystem I	1 (0.20%)	0	0	0	0	0	0	1	0
1.1.2.2	PS.lightreaction.photosystem I.PSI polypeptide subunits	1 (0.20%)	0	0	0	0	0	0	1	0
3	minor CHO metabolism	1 (0.20%)	0	0	0	0	0	1	0	0
9	mitochondrial electron transport / ATP synthesis	1 (0.20%)	0	0	0	0	0	0	1	0
10.5	cell wall.cell wall proteins	1 (0.20%)	0	0	1	0	0	0	0	0
10.5.1	cell wall.cell wall proteins.AGPs	1 (0.20%)	0	0	1	0	0	0	0	0
10.5.1.1	cell wall.cell wall proteins.AGPs.AGP	1 (0.20%)	0	0	1	0	0	0	0	0
10.6	cell wall.degradation	1 (0.20%)	1	0	0	0	0	0	0	0
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases	1 (0.20%)	1	0	0	0	0	0	0	0
11.1.12	lipid metabolism.FA synthesis and FA elongation.ACP protein	1 (0.20%)	0	0	0	1	0	0	0	0
11.1.9	lipid metabolism.FA synthesis and FA elongation.long chain fatty acid CoA ligase	1 (0.20%)	0	0	0	0	0	0	0	1
11.9	lipid metabolism.lipid degradation	1 (0.20%)	0	0	0	0	0	0	0	1
11.9.3	lipid metabolism.lipid degradation.lysophospholipases	1 (0.20%)	0	0	0	0	0	0	0	1
11.9.3.1	lipid metabolism.lipid degradation.lysophospholipases.phospholipase D	1 (0.20%)	0	0	0	0	0	0	0	1
13.2	amino acid metabolism.degradation	1 (0.20%)	0	0	0	0	1	0	0	0
13.2.3	amino acid metabolism.degradation.aspartate family	1 (0.20%)	0	0	0	0	1	0	0	0
13.2.3.5	amino acid metabolism.degradation.aspartate family.lysine	1 (0.20%)	0	0	0	0	1	0	0	0
13.2.3.5.1	mino acid metabolism.degradation.aspartate family.lysine.lysine decarboxylase	1 (0.20%)	0	0	0	0	1	0	0	0
13.99	amino acid metabolism.misc	1 (0.20%)	1	0	0	0	0	0	0	0
16.1	secondary metabolism.isoprenoids	1 (0.20%)	1	0	0	0	0	0	0	0
16.1.3	secondary metabolism.isoprenoids.tocopherol biosynthesis	1 (0.20%)	1	0	0	0	0	0	0	0
17.1	hormone metabolism.abscisic acid	1 (0.20%)	0	0	0	0	0	0	1	0
17.1.3	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	1 (0.20%)	0	0	0	0	0	0	1	0
17.4	hormone metabolism.cytokinin	1 (0.20%)	0	0	0	0	0	0	0	1
17.4.2	hormone metabolism.cytokinin.signal transduction	1 (0.20%)	0	0	0	0	0	0	0	1
17.5	hormone metabolism.ethylene	1 (0.20%)	0	0	0	1	0	0	0	0
17.5.1	hormone metabolism.ethylene.synthesis-degradation	1 (0.20%)	0	0	0	1	0	0	0	0
17.6	hormone metabolism.gibberelin	1 (0.20%)	0	0	1	0	0	0	0	0
17.6.2	hormone metabolism.gibberelin.signal transduction	1 (0.20%)	0	0	1	0	0	0	0	0
17.7	hormone metabolism.jasmonate	1 (0.20%)	0	0	1	0	0	0	0	0
17.7.1	hormone metabolism.jasmonate.synthesis-degradation	1 (0.20%)	0	0	1	0	0	0	0	0
17.7.1.2	hormone metabolism.jasmonate.synthesis-degradation.lipoxygenase	1 (0.20%)	0	0	1	0	0	0	0	0
2.2.1	major CHO metabolism.degradation.sucrose	1 (0.20%)	0	0	1	0	0	0	0	0
2.2.1.5	major CHO metabolism.degradation.sucrose.Susy	1 (0.20%)	0	0	1	0	0	0	0	0
2.2.2	major CHO metabolism.degradation.starch	1 (0.20%)	0	0	1	0	0	0	0	0
2.2.2.1	major CHO metabolism.degradation.starch.starch cleavage	1 (0.20%)	0	0	1	0	0	0	0	0
2.2.2.1.2	major CHO metabolism.degradation.starch.starch cleavage.beta amylase	1 (0.20%)	0	0	1	0	0	0	0	0
19	tetrapyrrole synthesis	1 (0.20%)	0	0	1	0	0	0	0	0
19.16	tetrapyrrole synthesis.chlorophyll b synthase	1 (0.20%)	0	0	1	0	0	0	0	0
20.1.1	stress.biotic.respiratory burst	1 (0.20%)	0	0	1	0	0	0	0	0
20.2.99	stress.abiotic.unspecified	1 (0.20%)	0	0	0	0	1	0	0	0
21	redox	1 (0.20%)	0	0	0	0	1	0	0	0
21.4	redox.glutaredoxins	1 (0.20%)	0	0	0	0	1	0	0	0
23.3.2	nucleotide metabolism.salvage.nucleoside kinases	1 (0.20%)	0	0	0	0	0	0	0	1
23.3.2.3	nucleotide metabolism.salvage.nucleoside kinases.thymidine kinase	1 (0.20%)	0	0	0	0	0	0	0	1
26.12	misc.peroxidases	1 (0.20%)	0	0	0	1	0	0	0	0
26.13	misc.acid and other phosphatases	1 (0.20%)	0	0	0	0	0	1	0	0
26.3	misc.gluco-, galacto- and mannosidases	1 (0.20%)	0	0	0	0	1	0	0	0
26.3.2	misc.gluco-, galacto- and mannosidases.beta-galactosidase	1 (0.20%)	0	0	0	0	1	0	0	0
26.4	misc.beta 1,3 glucan hydrolases	1 (0.20%)	0	0	0	0	0	0	1	0
26.4.1	misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase	1 (0.20%)	0	0	0	0	0	0	1	0
27.1.1	RNA.processing.splicing	1 (0.20%)	0	0	0	0	0	0	1	0
27.1.2	RNA.processing.RNA helicase	1 (0.20%)	0	0	0	1	0	0	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	1 (0.20%)	0	0	0	1	0	0	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	1 (0.20%)	0	0	0	0	0	1	0	0
27.3.29	RNA.regulation of transcription.TCP transcription factor family	1 (0.20%)	0	0	1	0	0	0	0	0
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	1 (0.20%)	0	1	0	0	0	0	0	0
27.3.36	RNA.regulation of transcription.Argonaute	1 (0.20%)	0	1	0	0	0	0	0	0
27.3.37	RNA.regulation of transcription.AS2,Lateral Organ Boundaries Gene Family	1 (0.20%)	0	0	0	0	0	0	1	0
27.3.50	RNA.regulation of transcription.General Transcription	1 (0.20%)	0	0	0	1	0	0	0	0
27.3.57	RNA.regulation of transcription.JUMONJI family	1 (0.20%)	0	0	0	0	0	1	0	0
27.3.62	RNA.regulation of transcription.Nucleosome/chromatin assembly factor group	1 (0.20%)	0	0	0	0	0	0	1	0
27.3.68	RNA.regulation of transcription.PWWP domain protein	1 (0.20%)	0	0	0	0	1	0	0	0
29.2.1.2.1.16	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S16	1 (0.20%)	0	0	0	0	0	0	0	1
29.2.1.2.2.10	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10	1 (0.20%)	0	0	0	0	1	0	0	0
29.2.1.2.2.57	protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7A	1 (0.20%)	0	0	1	0	0	0	0	0
29.2.3	protein.synthesis.initiation	1 (0.20%)	0	0	0	0	0	0	0	1
29.2.4	protein.synthesis.elongation	1 (0.20%)	0	0	0	1	0	0	0	0
29.5.11	protein.degradation.ubiquitin	1 (0.20%)	0	0	1	0	0	0	0	0
29.5.11.4.4	protein.degradation.ubiquitin.E3.APC	1 (0.20%)	0	0	0	0	1	0	0	0
29.5.4	protein.degradation.aspartate protease	1 (0.20%)	0	0	1	0	0	0	0	0
29.5.5	protein.degradation.serine protease	1 (0.20%)	0	0	0	0	0	1	0	0
29.5.7	protein.degradation.metalloprotease	1 (0.20%)	0	0	0	1	0	0	0	0
29.5.9	protein.degradation.AAA type	1 (0.20%)	0	0	0	1	0	0	0	0
3.6	minor CHO metabolism.callose	1 (0.20%)	0	0	0	0	0	1	0	0
9.1	mitochondrial electron transport / ATP synthesis.NADH-DH	1 (0.20%)	0	0	0	0	0	0	1	0
29.6	protein.folding	1 (0.20%)	0	0	0	0	1	0	0	0
29.7	protein.glycosylation	1 (0.20%)	0	0	0	1	0	0	0	0
30.11	signalling.light	1 (0.20%)	0	0	0	0	1	0	0	0
30.2	signalling.receptor kinases	1 (0.20%)	0	0	1	0	0	0	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	1 (0.20%)	0	0	1	0	0	0	0	0
30.4.1	signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase	1 (0.20%)	0	0	0	1	0	0	0	0
30.4.2	signalling.phosphinositides.phosphatidylinositol 4-kinase	1 (0.20%)	0	0	0	0	0	1	0	0
30.8	signalling.misc	1 (0.20%)	0	0	0	0	0	1	0	0
33.1	development.storage proteins	1 (0.20%)	0	0	0	0	1	0	0	0
34.19	transport.Major Intrinsic Proteins	1 (0.20%)	0	0	0	0	0	1	0	0
34.19.1	transport.Major Intrinsic Proteins.PIP	1 (0.20%)	0	0	0	0	0	1	0	0
34.5	transport.ammonium	1 (0.20%)	0	0	0	0	0	1	0	0
9.1.2	mitochondrial electron transport / ATP synthesis.NADH-DH.localisation not clear	1 (0.20%)	0	0	0	0	0	0	1	0