PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_238
Name: AtWER
Description: Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis

#Associated genes: 9
#Associated GO terms: 170

Biological Process
Molecular Function
Cellular Component

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Biological Process (back to top)

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GO	Description	#Associated genes	bra	egr	gma	ptr
GO:0009058	biosynthetic process	6 (66.67%)	1	1	2	2
GO:0044249	cellular biosynthetic process	6 (66.67%)	1	1	2	2
GO:0044237	cellular metabolic process	6 (66.67%)	1	1	2	2
GO:0044271	cellular nitrogen compound biosynthetic process	6 (66.67%)	1	1	2	2
GO:0034641	cellular nitrogen compound metabolic process	6 (66.67%)	1	1	2	2
GO:0009987	cellular process	6 (66.67%)	1	1	2	2
GO:0008152	metabolic process	6 (66.67%)	1	1	2	2
GO:0006807	nitrogen compound metabolic process	6 (66.67%)	1	1	2	2
GO:1901576	organic substance biosynthetic process	6 (66.67%)	1	1	2	2
GO:0071704	organic substance metabolic process	6 (66.67%)	1	1	2	2
GO:0032774	RNA biosynthetic process	5 (55.56%)	0	1	2	2
GO:0016070	RNA metabolic process	5 (55.56%)	0	1	2	2
GO:0019438	aromatic compound biosynthetic process	5 (55.56%)	0	1	2	2
GO:0065007	biological regulation	5 (55.56%)	0	1	2	2
GO:0006725	cellular aromatic compound metabolic process	5 (55.56%)	0	1	2	2
GO:0034645	cellular macromolecule biosynthetic process	5 (55.56%)	0	1	2	2
GO:0044260	cellular macromolecule metabolic process	5 (55.56%)	0	1	2	2
GO:0010467	gene expression	5 (55.56%)	0	1	2	2
GO:0018130	heterocycle biosynthetic process	5 (55.56%)	0	1	2	2
GO:0046483	heterocycle metabolic process	5 (55.56%)	0	1	2	2
GO:0009059	macromolecule biosynthetic process	5 (55.56%)	0	1	2	2
GO:0043170	macromolecule metabolic process	5 (55.56%)	0	1	2	2
GO:0090304	nucleic acid metabolic process	5 (55.56%)	0	1	2	2
GO:0034654	nucleobase-containing compound biosynthetic process	5 (55.56%)	0	1	2	2
GO:0006139	nucleobase-containing compound metabolic process	5 (55.56%)	0	1	2	2
GO:1901362	organic cyclic compound biosynthetic process	5 (55.56%)	0	1	2	2
GO:1901360	organic cyclic compound metabolic process	5 (55.56%)	0	1	2	2
GO:0044238	primary metabolic process	5 (55.56%)	0	1	2	2
GO:2001141	regulation of RNA biosynthetic process	5 (55.56%)	0	1	2	2
GO:0051252	regulation of RNA metabolic process	5 (55.56%)	0	1	2	2
GO:0050789	regulation of biological process	5 (55.56%)	0	1	2	2
GO:0009889	regulation of biosynthetic process	5 (55.56%)	0	1	2	2
GO:0031326	regulation of cellular biosynthetic process	5 (55.56%)	0	1	2	2
GO:2000112	regulation of cellular macromolecule biosynthetic process	5 (55.56%)	0	1	2	2
GO:0031323	regulation of cellular metabolic process	5 (55.56%)	0	1	2	2
GO:0050794	regulation of cellular process	5 (55.56%)	0	1	2	2
GO:0010468	regulation of gene expression	5 (55.56%)	0	1	2	2
GO:0010556	regulation of macromolecule biosynthetic process	5 (55.56%)	0	1	2	2
GO:0060255	regulation of macromolecule metabolic process	5 (55.56%)	0	1	2	2
GO:0019222	regulation of metabolic process	5 (55.56%)	0	1	2	2
GO:0051171	regulation of nitrogen compound metabolic process	5 (55.56%)	0	1	2	2
GO:0019219	regulation of nucleobase-containing compound metabolic process	5 (55.56%)	0	1	2	2
GO:0080090	regulation of primary metabolic process	5 (55.56%)	0	1	2	2
GO:0006355	regulation of transcription, DNA-dependent	5 (55.56%)	0	1	2	2
GO:0006351	transcription, DNA-templated	5 (55.56%)	0	1	2	2
GO:0048856	anatomical structure development	3 (33.33%)	0	1	2	0
GO:0009653	anatomical structure morphogenesis	3 (33.33%)	0	1	2	0
GO:0032502	developmental process	3 (33.33%)	0	1	2	0
GO:0007275	multicellular organismal development	3 (33.33%)	0	1	2	0
GO:0032501	multicellular organismal process	3 (33.33%)	0	1	2	0
GO:0048513	organ development	3 (33.33%)	0	1	2	0
GO:0050896	response to stimulus	3 (33.33%)	0	1	2	0
GO:0006950	response to stress	3 (33.33%)	0	1	2	0
GO:0044707	single-multicellular organism process	3 (33.33%)	0	1	2	0
GO:0044767	single-organism developmental process	3 (33.33%)	0	1	2	0
GO:0044699	single-organism process	3 (33.33%)	0	1	2	0
GO:0048731	system development	3 (33.33%)	0	1	2	0
GO:0009630	gravitropism	2 (22.22%)	0	0	2	0
GO:0048527	lateral root development	2 (22.22%)	0	0	2	0
GO:0010102	lateral root morphogenesis	2 (22.22%)	0	0	2	0
GO:0051253	negative regulation of RNA metabolic process	2 (22.22%)	0	0	2	0
GO:0048519	negative regulation of biological process	2 (22.22%)	0	0	2	0
GO:0009890	negative regulation of biosynthetic process	2 (22.22%)	0	0	2	0
GO:0031327	negative regulation of cellular biosynthetic process	2 (22.22%)	0	0	2	0
GO:2000113	negative regulation of cellular macromolecule biosynthetic process	2 (22.22%)	0	0	2	0
GO:0031324	negative regulation of cellular metabolic process	2 (22.22%)	0	0	2	0
GO:0048523	negative regulation of cellular process	2 (22.22%)	0	0	2	0
GO:0010629	negative regulation of gene expression	2 (22.22%)	0	0	2	0
GO:0010558	negative regulation of macromolecule biosynthetic process	2 (22.22%)	0	0	2	0
GO:0010605	negative regulation of macromolecule metabolic process	2 (22.22%)	0	0	2	0
GO:0009892	negative regulation of metabolic process	2 (22.22%)	0	0	2	0
GO:0051172	negative regulation of nitrogen compound metabolic process	2 (22.22%)	0	0	2	0
GO:0045934	negative regulation of nucleobase-containing compound metabolic process	2 (22.22%)	0	0	2	0
GO:0045892	negative regulation of transcription, DNA-dependent	2 (22.22%)	0	0	2	0
GO:0009791	post-embryonic development	2 (22.22%)	0	0	2	0
GO:0009886	post-embryonic morphogenesis	2 (22.22%)	0	0	2	0
GO:0048569	post-embryonic organ development	2 (22.22%)	0	0	2	0
GO:0048528	post-embryonic root development	2 (22.22%)	0	0	2	0
GO:0010101	post-embryonic root morphogenesis	2 (22.22%)	0	0	2	0
GO:0009628	response to abiotic stimulus	2 (22.22%)	0	0	2	0
GO:0009733	response to auxin	2 (22.22%)	0	0	2	0
GO:0042221	response to chemical	2 (22.22%)	0	0	2	0
GO:0009719	response to endogenous stimulus	2 (22.22%)	0	0	2	0
GO:0009605	response to external stimulus	2 (22.22%)	0	0	2	0
GO:0009629	response to gravity	2 (22.22%)	0	0	2	0
GO:0009725	response to hormone	2 (22.22%)	0	0	2	0
GO:0010035	response to inorganic substance	2 (22.22%)	0	0	2	0
GO:0009753	response to jasmonic acid	2 (22.22%)	0	0	2	0
GO:0010033	response to organic substance	2 (22.22%)	0	0	2	0
GO:1901700	response to oxygen-containing compound	2 (22.22%)	0	0	2	0
GO:0009415	response to water	2 (22.22%)	0	0	2	0
GO:0009414	response to water deprivation	2 (22.22%)	0	0	2	0
GO:0009611	response to wounding	2 (22.22%)	0	0	2	0
GO:0048364	root development	2 (22.22%)	0	0	2	0
GO:0010015	root morphogenesis	2 (22.22%)	0	0	2	0
GO:0022622	root system development	2 (22.22%)	0	0	2	0
GO:0044763	single-organism cellular process	2 (22.22%)	0	1	1	0
GO:0009606	tropism	2 (22.22%)	0	0	2	0
GO:0009309	amine biosynthetic process	1 (11.11%)	1	0	0	0
GO:0009308	amine metabolic process	1 (11.11%)	1	0	0	0
GO:0009734	auxin mediated signaling pathway	1 (11.11%)	0	0	1	0
GO:0007154	cell communication	1 (11.11%)	0	0	1	0
GO:0030154	cell differentiation	1 (11.11%)	0	1	0	0
GO:0044106	cellular amine metabolic process	1 (11.11%)	1	0	0	0
GO:0042401	cellular biogenic amine biosynthetic process	1 (11.11%)	1	0	0	0
GO:0006576	cellular biogenic amine metabolic process	1 (11.11%)	1	0	0	0
GO:0048869	cellular developmental process	1 (11.11%)	0	1	0	0
GO:0071365	cellular response to auxin stimulus	1 (11.11%)	0	0	1	0
GO:0070887	cellular response to chemical stimulus	1 (11.11%)	0	0	1	0
GO:0071495	cellular response to endogenous stimulus	1 (11.11%)	0	0	1	0
GO:0032870	cellular response to hormone stimulus	1 (11.11%)	0	0	1	0
GO:0071310	cellular response to organic substance	1 (11.11%)	0	0	1	0
GO:0051716	cellular response to stimulus	1 (11.11%)	0	0	1	0
GO:0006952	defense response	1 (11.11%)	0	1	0	0
GO:0009755	hormone-mediated signaling pathway	1 (11.11%)	0	0	1	0
GO:0048366	leaf development	1 (11.11%)	0	1	0	0
GO:0009965	leaf morphogenesis	1 (11.11%)	0	1	0	0
GO:0009887	organ morphogenesis	1 (11.11%)	0	1	0	0
GO:1901566	organonitrogen compound biosynthetic process	1 (11.11%)	1	0	0	0
GO:1901564	organonitrogen compound metabolic process	1 (11.11%)	1	0	0	0
GO:0048827	phyllome development	1 (11.11%)	0	1	0	0
GO:0006596	polyamine biosynthetic process	1 (11.11%)	1	0	0	0
GO:0006595	polyamine metabolic process	1 (11.11%)	1	0	0	0
GO:0045962	positive regulation of development, heterochronic	1 (11.11%)	0	1	0	0
GO:0031347	regulation of defense response	1 (11.11%)	0	1	0	0
GO:0040034	regulation of development, heterochronic	1 (11.11%)	0	1	0	0
GO:0050793	regulation of developmental process	1 (11.11%)	0	1	0	0
GO:0048583	regulation of response to stimulus	1 (11.11%)	0	1	0	0
GO:0080134	regulation of response to stress	1 (11.11%)	0	1	0	0
GO:0048367	shoot system development	1 (11.11%)	0	1	0	0
GO:0010016	shoot system morphogenesis	1 (11.11%)	0	1	0	0
GO:0007165	signal transduction	1 (11.11%)	0	0	1	0
GO:0023052	signaling	1 (11.11%)	0	0	1	0
GO:0044700	single organism signaling	1 (11.11%)	0	0	1	0
GO:0008295	spermidine biosynthetic process	1 (11.11%)	1	0	0	0
GO:0008216	spermidine metabolic process	1 (11.11%)	1	0	0	0
GO:0006597	spermine biosynthetic process	1 (11.11%)	1	0	0	0
GO:0008215	spermine metabolic process	1 (11.11%)	1	0	0	0

Molecular Function (back to top)

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GO	Description	#Associated genes	bra	egr	gma	ptr	vvi
GO:0005488	binding	7 (77.78%)	0	1	2	3	1
GO:0005515	protein binding	4 (44.44%)	0	1	2	1	0
GO:0043169	cation binding	3 (33.33%)	0	0	0	3	0
GO:1901363	heterocyclic compound binding	3 (33.33%)	0	0	0	2	1
GO:0043167	ion binding	3 (33.33%)	0	0	0	3	0
GO:0046872	metal ion binding	3 (33.33%)	0	0	0	3	0
GO:0003676	nucleic acid binding	3 (33.33%)	0	0	0	2	1
GO:0097159	organic cyclic compound binding	3 (33.33%)	0	0	0	2	1
GO:0046914	transition metal ion binding	3 (33.33%)	0	0	0	3	0
GO:0008270	zinc ion binding	3 (33.33%)	0	0	0	3	0
GO:0003677	DNA binding	2 (22.22%)	0	0	0	2	0
GO:0046983	protein dimerization activity	2 (22.22%)	0	0	2	0	0
GO:0003723	RNA binding	1 (11.11%)	0	0	0	0	1
GO:0004014	adenosylmethionine decarboxylase activity	1 (11.11%)	1	0	0	0	0
GO:0016830	carbon-carbon lyase activity	1 (11.11%)	1	0	0	0	0
GO:0016831	carboxy-lyase activity	1 (11.11%)	1	0	0	0	0
GO:0003824	catalytic activity	1 (11.11%)	1	0	0	0	0
GO:0042802	identical protein binding	1 (11.11%)	0	0	1	0	0
GO:0016829	lyase activity	1 (11.11%)	1	0	0	0	0

Cellular Component (back to top)

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GO	Description	#Associated genes	egr	gma
GO:0005623	cell	3 (33.33%)	1	2
GO:0044464	cell part	3 (33.33%)	1	2
GO:0005622	intracellular	3 (33.33%)	1	2
GO:0043231	intracellular membrane-bounded organelle	3 (33.33%)	1	2
GO:0043229	intracellular organelle	3 (33.33%)	1	2
GO:0044424	intracellular part	3 (33.33%)	1	2
GO:0043227	membrane-bounded organelle	3 (33.33%)	1	2
GO:0043226	organelle	3 (33.33%)	1	2
GO:0005634	nucleus	2 (22.22%)	0	2
GO:0009507	chloroplast	1 (11.11%)	1	0
GO:0005737	cytoplasm	1 (11.11%)	1	0
GO:0044444	cytoplasmic part	1 (11.11%)	1	0
GO:0009536	plastid	1 (11.11%)	1	0