PLAZA 3.0 Dicots : Binding Sites

InterPro domains associated with a binding site

Binding site: Motif_187
Name: AT1BOX
Description: AT-1 box (AT-rich element) found in the promoter region of the genes for tobacco chlorophyll a/b binding protein (cab) and small subunit of ribulose-1,5-bisphosphate carboxylase (rbcS); Deletion of a region containing the AT-1 site in the tomato RBCS3A gene strongly inhibited reporter gene expression, whereas AT-1 site in N. plumbaginifolia CAB gene (cab-E) is in a negative element

#Associated genes: 117
#Associated InterPro terms: 189

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InterPro	Description	#Associated genes	ath	bra	cme	egr	gma	ptr	ppe	sly	stu	vvi
IPR000719	Protein kinase domain	8 (6.84%)	1	0	1	1	2	1	1	0	0	1
IPR011009	Protein kinase-like domain	8 (6.84%)	1	0	1	1	2	1	1	0	0	1
IPR002290	Serine/threonine- / dual specificity protein kinase, catalytic domain	8 (6.84%)	1	0	1	1	2	1	1	0	0	1
IPR008271	Serine/threonine-protein kinase, active site	8 (6.84%)	1	0	1	1	2	1	1	0	0	1
IPR017441	Protein kinase, ATP binding site	7 (5.98%)	1	0	1	1	2	0	1	0	0	1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	6 (5.13%)	0	1	0	2	0	2	0	0	0	1
IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase	5 (4.27%)	1	1	1	0	0	0	0	0	0	2
IPR000961	AGC-kinase, C-terminal	4 (3.42%)	1	0	1	0	1	0	0	0	0	1
IPR001748	G10 protein	4 (3.42%)	1	0	0	1	1	0	1	0	0	0
IPR017892	Protein kinase, C-terminal	4 (3.42%)	1	0	1	0	1	0	0	0	0	1
IPR018230	BUD31/G10-related, conserved site	3 (2.56%)	1	0	0	1	1	0	0	0	0	0
IPR013781	Glycoside hydrolase, catalytic domain	3 (2.56%)	1	0	0	0	1	0	0	0	0	1
IPR017853	Glycoside hydrolase, superfamily	3 (2.56%)	1	0	0	0	1	0	0	0	0	1
IPR002902	Gnk2-homologous domain	3 (2.56%)	0	0	0	1	0	0	0	0	1	1
IPR008949	Terpenoid synthase	3 (2.56%)	0	0	0	1	1	0	0	0	1	0
IPR003593	AAA+ ATPase domain	2 (1.71%)	0	0	0	1	0	1	0	0	0	0
IPR017998	Chaperone tailless complex polypeptide 1 (TCP-1)	2 (1.71%)	0	0	0	0	2	0	0	0	0	0
IPR002423	Chaperonin Cpn60/TCP-1	2 (1.71%)	0	0	0	0	2	0	0	0	0	0
IPR013320	Concanavalin A-like lectin/glucanase, subgroup	2 (1.71%)	0	0	0	1	0	1	0	0	0	0
IPR008972	Cupredoxin	2 (1.71%)	0	1	0	0	1	0	0	0	0	0
IPR002130	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	2 (1.71%)	0	0	0	0	1	1	0	0	0	0
IPR020892	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	2 (1.71%)	0	0	0	0	1	1	0	0	0	0
IPR027214	Cystatin	2 (1.71%)	0	0	0	1	1	0	0	0	0	0
IPR001360	Glycoside hydrolase, family 1	2 (1.71%)	0	0	0	0	1	0	0	0	0	1
IPR018120	Glycoside hydrolase, family 1, active site	2 (1.71%)	0	0	0	0	1	0	0	0	0	1
IPR027413	GroEL-like equatorial domain	2 (1.71%)	0	0	0	0	2	0	0	0	0	0
IPR004087	K Homology domain	2 (1.71%)	0	0	0	0	1	1	0	0	0	0
IPR007248	Mpv17/PMP22	2 (1.71%)	0	0	0	0	1	1	0	0	0	0
IPR001117	Multicopper oxidase, type 1	2 (1.71%)	0	1	0	0	1	0	0	0	0	0
IPR011706	Multicopper oxidase, type 2	2 (1.71%)	0	1	0	0	1	0	0	0	0	0
IPR011707	Multicopper oxidase, type 3	2 (1.71%)	0	1	0	0	1	0	0	0	0	0
IPR016040	NAD(P)-binding domain	2 (1.71%)	0	1	0	0	1	0	0	0	0	0
IPR015797	NUDIX hydrolase domain-like	2 (1.71%)	0	0	0	2	0	0	0	0	0	0
IPR015655	Protein phosphatase 2C	2 (1.71%)	1	0	0	1	0	0	0	0	0	0
IPR001932	Protein phosphatase 2C (PP2C)-like domain	2 (1.71%)	1	0	0	1	0	0	0	0	0	0
IPR000222	Protein phosphatase 2C, manganese/magnesium aspartate binding site	2 (1.71%)	1	0	0	1	0	0	0	0	0	0
IPR000010	Proteinase inhibitor I25, cystatin	2 (1.71%)	0	0	0	1	1	0	0	0	0	0
IPR012720	T-complex protein 1, eta subunit	2 (1.71%)	0	0	0	0	2	0	0	0	0	0
IPR009400	TFIIH subunit TTDA/Tfb5	2 (1.71%)	0	0	0	0	1	0	1	0	0	0
IPR001906	Terpene synthase, N-terminal domain	2 (1.71%)	0	0	0	1	0	0	0	0	1	0
IPR005630	Terpene synthase, metal-binding domain	2 (1.71%)	0	0	0	1	0	0	0	0	1	0
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	2 (1.71%)	0	0	0	1	0	0	0	0	1	0
IPR013083	Zinc finger, RING/FYVE/PHD-type	2 (1.71%)	0	0	0	0	1	0	0	0	0	1
IPR001080	3Fe-4S ferredoxin	1 (0.85%)	1	0	0	0	0	0	0	0	0	0
IPR017896	4Fe-4S ferredoxin-type, iron-sulpur binding domain	1 (0.85%)	1	0	0	0	0	0	0	0	0	0
IPR003496	ABA/WDS induced protein	1 (0.85%)	0	0	0	0	0	0	0	1	0	0
IPR011527	ABC transporter type 1, transmembrane domain	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR017871	ABC transporter, conserved site	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR001140	ABC transporter, transmembrane domain	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR003439	ABC transporter-like	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR013154	Alcohol dehydrogenase GroES-like	1 (0.85%)	0	1	0	0	0	0	0	0	0	0
IPR002085	Alcohol dehydrogenase superfamily, zinc-type	1 (0.85%)	0	1	0	0	0	0	0	0	0	0
IPR013149	Alcohol dehydrogenase, C-terminal	1 (0.85%)	0	1	0	0	0	0	0	0	0	0
IPR002328	Alcohol dehydrogenase, zinc-type, conserved site	1 (0.85%)	0	1	0	0	0	0	0	0	0	0
IPR013057	Amino acid transporter, transmembrane	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR003609	Apple-like	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR023271	Aquaporin-like	1 (0.85%)	0	0	0	0	0	0	1	0	0	0
IPR011989	Armadillo-like helical	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR016024	Armadillo-type fold	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR001461	Aspartic peptidase	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR021109	Aspartic peptidase domain	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR025300	Beta-galactosidase jelly roll domain	1 (0.85%)	1	0	0	0	0	0	0	0	0	0
IPR004324	Biopterin transport-related protein BT1	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR001480	Bulb-type lectin domain	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR001251	CRAL-TRIO domain	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR011074	CRAL/TRIO, N-terminal domain	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR002194	Chaperonin TCP-1, conserved site	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR016159	Cullin repeat-like-containing domain	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR000595	Cyclic nucleotide-binding domain	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR018490	Cyclic nucleotide-binding-like	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR013632	DNA recombination and repair protein Rad51, C-terminal	1 (0.85%)	0	1	0	0	0	0	0	0	0	0
IPR020588	DNA recombination/repair protein RecA-like, ATP-binding domain	1 (0.85%)	0	1	0	0	0	0	0	0	0	0
IPR011545	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR027999	Death-like domain of Spt6	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR000767	Disease resistance protein	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR001623	DnaJ domain	1 (0.85%)	1	0	0	0	0	0	0	0	0	0
IPR005175	Domain of unknown function DUF296	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR000620	Drug/metabolite transporter	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR004140	Exocyst complex protein Exo70	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR001810	F-box domain	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR019378	GDP-fucose protein O-fucosyltransferase	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR008979	Galactose-binding domain-like	1 (0.85%)	1	0	0	0	0	0	0	0	0	0
IPR001944	Glycoside hydrolase, family 35	1 (0.85%)	1	0	0	0	0	0	0	0	0	0
IPR019801	Glycoside hydrolase, family 35, conserved site	1 (0.85%)	1	0	0	0	0	0	0	0	0	0
IPR001296	Glycosyl transferase, family 1	1 (0.85%)	0	1	0	0	0	0	0	0	0	0
IPR004360	Glyoxalase/fosfomycin resistance/dioxygenase domain	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR019177	Golgin subfamily A member 5	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR011032	GroES (chaperonin 10)-like	1 (0.85%)	0	1	0	0	0	0	0	0	0	0
IPR001404	Heat shock protein Hsp90 family	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR020575	Heat shock protein Hsp90, N-terminal	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR019805	Heat shock protein Hsp90, conserved site	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR001650	Helicase, C-terminal	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR014001	Helicase, superfamily 1/2, ATP-binding domain	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR003594	Histidine kinase-like ATPase, ATP-binding domain	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR000164	Histone H3	1 (0.85%)	0	0	0	0	0	0	0	1	0	0
IPR007125	Histone core	1 (0.85%)	0	0	0	0	0	0	0	1	0	0
IPR009072	Histone-fold	1 (0.85%)	0	0	0	0	0	0	0	1	0	0
IPR001356	Homeobox domain	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR009057	Homeodomain-like	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR005821	Ion transport domain	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR001752	Kinesin, motor domain	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR019821	Kinesin, motor region, conserved site	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR027640	Kinesin-like protein	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR014893	Ku, C-terminal	1 (0.85%)	0	0	0	0	0	0	0	0	0	1
IPR005160	Ku70/Ku80 C-terminal arm	1 (0.85%)	0	0	0	0	0	0	0	0	0	1
IPR006164	Ku70/Ku80 beta-barrel domain	1 (0.85%)	0	0	0	0	0	0	0	0	0	1
IPR005161	Ku70/Ku80, N-terminal alpha/beta	1 (0.85%)	0	0	0	0	0	0	0	0	0	1
IPR024193	Ku80	1 (0.85%)	0	0	0	0	0	0	0	0	0	1
IPR001611	Leucine-rich repeat	1 (0.85%)	0	0	0	0	0	0	1	0	0	0
IPR003591	Leucine-rich repeat, typical subtype	1 (0.85%)	0	0	0	0	0	0	1	0	0	0
IPR010920	Like-Sm (LSM) domain	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR001087	Lipase, GDSL	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR002921	Lipase, class 3	1 (0.85%)	0	0	1	0	0	0	0	0	0	0
IPR002083	MATH	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR026573	Magnesium transporter MRS2/LPE10	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR016196	Major facilitator superfamily domain, general substrate transporter	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR000425	Major intrinsic protein	1 (0.85%)	0	0	0	0	0	0	1	0	0	0
IPR022357	Major intrinsic protein, conserved site	1 (0.85%)	0	0	0	0	0	0	1	0	0	0
IPR021720	Malectin	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR024788	Malectin-like carbohydrate-binding domain	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR006685	Mechanosensitive ion channel MscS	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR002523	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR002528	Multi antimicrobial extrusion protein	1 (0.85%)	1	0	0	0	0	0	0	0	0	0
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR003441	NAC domain	1 (0.85%)	1	0	0	0	0	0	0	0	0	0
IPR002182	NB-ARC	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR000086	NUDIX hydrolase domain	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR020084	NUDIX hydrolase, conserved site	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR012340	Nucleic acid-binding, OB-fold	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR004813	Oligopeptide transporter, OPT superfamily	1 (0.85%)	0	0	0	0	0	0	0	0	1	0
IPR013227	PAN-2 domain	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR000403	Phosphatidylinositol 3-/4-kinase, catalytic domain	1 (0.85%)	0	0	1	0	0	0	0	0	0	0
IPR009806	Photosystem II PsbW, class 2	1 (0.85%)	0	0	0	0	0	0	0	0	0	1
IPR020843	Polyketide synthase, enoylreductase	1 (0.85%)	0	1	0	0	0	0	0	0	0	0
IPR017446	Polyprenyl synthetase-related	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR003938	Potassium channel, voltage-dependent, EAG/ELK/ERG	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR004895	Prenylated rab acceptor PRA1	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR003099	Prephenate dehydrogenase	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR021775	Protein of unknown function DUF3339	1 (0.85%)	0	0	0	0	0	0	0	0	1	0
IPR016482	Protein transport protein SecG/Sec61-beta/Sbh1	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR018073	Proteinase inhibitor I25, cystatin, conserved site	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR006145	Pseudouridine synthase, RsuA/RluB/C/D/E/F	1 (0.85%)	0	1	0	0	0	0	0	0	0	0
IPR018496	Pseudouridine synthase, RsuA/RluB/E/F, conserved site	1 (0.85%)	0	1	0	0	0	0	0	0	0	0
IPR020103	Pseudouridine synthase, catalytic domain	1 (0.85%)	0	1	0	0	0	0	0	0	0	0
IPR014014	RNA helicase, DEAD-box type, Q motif	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR002942	RNA-binding S4 domain	1 (0.85%)	0	1	0	0	0	0	0	0	0	0
IPR022967	RNA-binding domain, S1	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR000195	Rab-GTPase-TBC domain	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR011256	Regulatory factor, effector binding domain	1 (0.85%)	0	0	0	0	0	0	0	1	0	0
IPR012337	Ribonuclease H-like domain	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR001813	Ribosomal protein L10/L12	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR001790	Ribosomal protein L10/acidic P0	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR000597	Ribosomal protein L3	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR019926	Ribosomal protein L3, conserved site	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR003029	Ribosomal protein S1, RNA-binding domain	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR020568	Ribosomal protein S5 domain 2-type fold	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR014710	RmlC-like jelly roll fold	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR010994	RuvA domain 2-like	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR000858	S-locus glycoprotein	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR013831	SGNH hydrolase-type esterase domain	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR000980	SH2 domain	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR006917	SOUL haem-binding protein	1 (0.85%)	0	0	0	0	0	0	0	1	0	0
IPR016194	SPOC like C-terminal domain	1 (0.85%)	0	0	0	0	0	0	0	0	0	1
IPR007608	Senescence regulator S40	1 (0.85%)	0	1	0	0	0	0	0	0	0	0
IPR022377	Small hydrophilic plant seed protein, conserved site	1 (0.85%)	0	0	0	0	0	0	0	0	0	1
IPR028083	Spt6 acidic, N-terminal domain	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR000389	Stress induced protein	1 (0.85%)	0	0	0	0	0	0	0	0	0	1
IPR004345	TB2/DP1/HVA22-related protein	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR008974	TRAF-like	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR004648	Tetrapeptide transporter, OPT1/isp4	1 (0.85%)	0	0	0	0	0	0	0	0	1	0
IPR000301	Tetraspanin	1 (0.85%)	0	0	0	0	0	0	1	0	0	0
IPR018503	Tetraspanin, conserved site	1 (0.85%)	0	0	0	0	0	0	1	0	0	0
IPR018499	Tetraspanin/Peripherin	1 (0.85%)	0	0	0	0	0	0	1	0	0	0
IPR023097	Tex RuvX-like domain	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR023323	Tex-like domain	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR028231	Transcription elongation factor SPT6, YqgF domain	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR017072	Transcription elongation factor Spt6	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR009000	Translation protein, beta-barrel domain	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR025659	Tubby C-terminal-like domain	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR000007	Tubby, C-terminal	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR018066	Tubby, C-terminal, conserved site	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR003613	U box domain	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR025287	Wall-associated receptor kinase galacturonan-binding domain	1 (0.85%)	0	0	0	0	0	1	0	0	0	0
IPR006641	YqgF/RNase H-like domain	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR010488	Zeta toxin domain	1 (0.85%)	0	0	0	0	0	0	0	0	0	1
IPR001878	Zinc finger, CCHC-type	1 (0.85%)	0	0	0	1	0	0	0	0	0	0
IPR001781	Zinc finger, LIM-type	1 (0.85%)	0	0	0	0	1	0	0	0	0	0
IPR001841	Zinc finger, RING-type	1 (0.85%)	0	0	0	0	0	0	0	0	0	1
IPR002035	von Willebrand factor, type A	1 (0.85%)	0	0	0	0	0	0	0	0	0	1