Gene Ontology terms associated with a binding site
- Binding site
- Motif_126
- Name
- 5256BOXLELAT5256
- Description
- 52/56 box; A sequence motif shared between the tomato LAT(Late Anther Tomato)52 and LAT56 promoters; Encompassing PB core motif (TGTGGTT), and is closely related to the box II sequence motif in the pea rbcS-3A gene promoter; Involved in modulating the activity of the LAT gene promoters in pollen; Dispensable for the developmental regulation of the LAT52 gene in pollen; 52/56 box may be a target for the binding of a member of the GT-1 transcription factor family
- #Associated genes
- 3
- #Associated GO terms
- 107
Biological Process
Molecular Function
Cellular Component
Molecular Function (back to top)
Click table-header(s) to enable sortingGO | Description | #Associated genes | ath | bra | cme | egr | gma | ptr | ppe | sly | stu | vvi |
---|---|---|---|---|---|---|---|---|---|---|---|---|
GO:0005488 | binding | 2 (66.67%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
GO:0003677 | DNA binding | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0016881 | acid-amino acid ligase activity | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0003824 | catalytic activity | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:1901363 | heterocyclic compound binding | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0016874 | ligase activity | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0016879 | ligase activity, forming carbon-nitrogen bonds | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0003676 | nucleic acid binding | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0097159 | organic cyclic compound binding | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0005515 | protein binding | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0046983 | protein dimerization activity | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0046982 | protein heterodimerization activity | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0019787 | small conjugating protein ligase activity | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0004842 | ubiquitin-protein ligase activity | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
Biological Process (back to top)
Click table-header(s) to enable sortingGO | Description | #Associated genes | ath | bra | cme | egr | gma | ptr | ppe | sly | stu | vvi |
---|---|---|---|---|---|---|---|---|---|---|---|---|
GO:0044260 | cellular macromolecule metabolic process | 2 (66.67%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
GO:0044237 | cellular metabolic process | 2 (66.67%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
GO:0009987 | cellular process | 2 (66.67%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
GO:0043170 | macromolecule metabolic process | 2 (66.67%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
GO:0008152 | metabolic process | 2 (66.67%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
GO:0071704 | organic substance metabolic process | 2 (66.67%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
GO:0044238 | primary metabolic process | 2 (66.67%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
GO:0044699 | single-organism process | 2 (66.67%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
GO:0071103 | DNA conformation change | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0006259 | DNA metabolic process | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0006323 | DNA packaging | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0006725 | cellular aromatic compound metabolic process | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0022607 | cellular component assembly | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0044085 | cellular component biogenesis | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0016043 | cellular component organization | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0071840 | cellular component organization or biogenesis | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0034622 | cellular macromolecular complex assembly | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0034641 | cellular nitrogen compound metabolic process | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0044267 | cellular protein metabolic process | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0006464 | cellular protein modification process | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0031497 | chromatin assembly | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0006333 | chromatin assembly or disassembly | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0006325 | chromatin organization | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0051276 | chromosome organization | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0006952 | defense response | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0046483 | heterocycle metabolic process | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0002252 | immune effector process | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0002376 | immune system process | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0065003 | macromolecular complex assembly | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0043933 | macromolecular complex subunit organization | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0043412 | macromolecule modification | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0006807 | nitrogen compound metabolic process | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0090304 | nucleic acid metabolic process | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0006139 | nucleobase-containing compound metabolic process | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0006334 | nucleosome assembly | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0034728 | nucleosome organization | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0006996 | organelle organization | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:1901360 | organic cyclic compound metabolic process | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0051865 | protein autoubiquitination | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0006461 | protein complex assembly | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0070271 | protein complex biogenesis | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0071822 | protein complex subunit organization | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0019538 | protein metabolic process | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0032446 | protein modification by small protein conjugation | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0070647 | protein modification by small protein conjugation or removal | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0036211 | protein modification process | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0016567 | protein ubiquitination | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0065004 | protein-DNA complex assembly | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0071824 | protein-DNA complex subunit organization | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0045730 | respiratory burst | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0002679 | respiratory burst involved in defense response | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0009628 | response to abiotic stimulus | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0042221 | response to chemical | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0010200 | response to chitin | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0009719 | response to endogenous stimulus | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0010035 | response to inorganic substance | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:1901698 | response to nitrogen compound | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0010033 | response to organic substance | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0010243 | response to organonitrogen compound | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:1901700 | response to oxygen-containing compound | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0050896 | response to stimulus | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0006950 | response to stress | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0009415 | response to water | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0009414 | response to water deprivation | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0044763 | single-organism cellular process | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0044710 | single-organism metabolic process | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
Cellular Component (back to top)
Click table-header(s) to enable sortingGO | Description | #Associated genes | ath | bra | cme | egr | gma | ptr | ppe | sly | stu | vvi |
---|---|---|---|---|---|---|---|---|---|---|---|---|
GO:0005623 | cell | 2 (66.67%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
GO:0044464 | cell part | 2 (66.67%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
GO:0005622 | intracellular | 2 (66.67%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
GO:0044424 | intracellular part | 2 (66.67%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
GO:0032991 | macromolecular complex | 2 (66.67%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
GO:0043234 | protein complex | 2 (66.67%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
GO:1990104 | DNA bending complex | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0044815 | DNA packaging complex | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:1902494 | catalytic complex | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0000785 | chromatin | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0044427 | chromosomal part | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0005694 | chromosome | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0005737 | cytoplasm | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0044444 | cytoplasmic part | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0005829 | cytosol | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
GO:0043231 | intracellular membrane-bounded organelle | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0043232 | intracellular non-membrane-bounded organelle | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0043229 | intracellular organelle | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0044446 | intracellular organelle part | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0043227 | membrane-bounded organelle | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0043228 | non-membrane-bounded organelle | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0000786 | nucleosome | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0005634 | nucleus | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0043226 | organelle | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0044422 | organelle part | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0032993 | protein-DNA complex | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GO:0000151 | ubiquitin ligase complex | 1 (33.33%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |