PLAZA 3.0 Dicots : Binding Sites

Gene Ontology terms associated with a binding site

Binding site: Motif_126
Name: 5256BOXLELAT5256
Description: 52/56 box; A sequence motif shared between the tomato LAT(Late Anther Tomato)52 and LAT56 promoters; Encompassing PB core motif (TGTGGTT), and is closely related to the box II sequence motif in the pea rbcS-3A gene promoter; Involved in modulating the activity of the LAT gene promoters in pollen; Dispensable for the developmental regulation of the LAT52 gene in pollen; 52/56 box may be a target for the binding of a member of the GT-1 transcription factor family

#Associated genes: 3
#Associated GO terms: 107

Biological Process
Molecular Function
Cellular Component

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Molecular Function (back to top)

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GO	Description	#Associated genes	ptr	stu
GO:0005488	binding	2 (66.67%)	1	1
GO:0003677	DNA binding	1 (33.33%)	1	0
GO:0016881	acid-amino acid ligase activity	1 (33.33%)	0	1
GO:0003824	catalytic activity	1 (33.33%)	0	1
GO:1901363	heterocyclic compound binding	1 (33.33%)	1	0
GO:0016874	ligase activity	1 (33.33%)	0	1
GO:0016879	ligase activity, forming carbon-nitrogen bonds	1 (33.33%)	0	1
GO:0003676	nucleic acid binding	1 (33.33%)	1	0
GO:0097159	organic cyclic compound binding	1 (33.33%)	1	0
GO:0005515	protein binding	1 (33.33%)	1	0
GO:0046983	protein dimerization activity	1 (33.33%)	1	0
GO:0046982	protein heterodimerization activity	1 (33.33%)	1	0
GO:0019787	small conjugating protein ligase activity	1 (33.33%)	0	1
GO:0004842	ubiquitin-protein ligase activity	1 (33.33%)	0	1

Biological Process (back to top)

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GO	Description	#Associated genes	ptr	stu
GO:0044260	cellular macromolecule metabolic process	2 (66.67%)	1	1
GO:0044237	cellular metabolic process	2 (66.67%)	1	1
GO:0009987	cellular process	2 (66.67%)	1	1
GO:0043170	macromolecule metabolic process	2 (66.67%)	1	1
GO:0008152	metabolic process	2 (66.67%)	1	1
GO:0071704	organic substance metabolic process	2 (66.67%)	1	1
GO:0044238	primary metabolic process	2 (66.67%)	1	1
GO:0044699	single-organism process	2 (66.67%)	1	1
GO:0071103	DNA conformation change	1 (33.33%)	1	0
GO:0006259	DNA metabolic process	1 (33.33%)	1	0
GO:0006323	DNA packaging	1 (33.33%)	1	0
GO:0006725	cellular aromatic compound metabolic process	1 (33.33%)	1	0
GO:0022607	cellular component assembly	1 (33.33%)	1	0
GO:0044085	cellular component biogenesis	1 (33.33%)	1	0
GO:0016043	cellular component organization	1 (33.33%)	1	0
GO:0071840	cellular component organization or biogenesis	1 (33.33%)	1	0
GO:0034622	cellular macromolecular complex assembly	1 (33.33%)	1	0
GO:0034641	cellular nitrogen compound metabolic process	1 (33.33%)	1	0
GO:0044267	cellular protein metabolic process	1 (33.33%)	0	1
GO:0006464	cellular protein modification process	1 (33.33%)	0	1
GO:0031497	chromatin assembly	1 (33.33%)	1	0
GO:0006333	chromatin assembly or disassembly	1 (33.33%)	1	0
GO:0006325	chromatin organization	1 (33.33%)	1	0
GO:0051276	chromosome organization	1 (33.33%)	1	0
GO:0006952	defense response	1 (33.33%)	0	1
GO:0046483	heterocycle metabolic process	1 (33.33%)	1	0
GO:0002252	immune effector process	1 (33.33%)	0	1
GO:0002376	immune system process	1 (33.33%)	0	1
GO:0065003	macromolecular complex assembly	1 (33.33%)	1	0
GO:0043933	macromolecular complex subunit organization	1 (33.33%)	1	0
GO:0043412	macromolecule modification	1 (33.33%)	0	1
GO:0006807	nitrogen compound metabolic process	1 (33.33%)	1	0
GO:0090304	nucleic acid metabolic process	1 (33.33%)	1	0
GO:0006139	nucleobase-containing compound metabolic process	1 (33.33%)	1	0
GO:0006334	nucleosome assembly	1 (33.33%)	1	0
GO:0034728	nucleosome organization	1 (33.33%)	1	0
GO:0006996	organelle organization	1 (33.33%)	1	0
GO:1901360	organic cyclic compound metabolic process	1 (33.33%)	1	0
GO:0051865	protein autoubiquitination	1 (33.33%)	0	1
GO:0006461	protein complex assembly	1 (33.33%)	1	0
GO:0070271	protein complex biogenesis	1 (33.33%)	1	0
GO:0071822	protein complex subunit organization	1 (33.33%)	1	0
GO:0019538	protein metabolic process	1 (33.33%)	0	1
GO:0032446	protein modification by small protein conjugation	1 (33.33%)	0	1
GO:0070647	protein modification by small protein conjugation or removal	1 (33.33%)	0	1
GO:0036211	protein modification process	1 (33.33%)	0	1
GO:0016567	protein ubiquitination	1 (33.33%)	0	1
GO:0065004	protein-DNA complex assembly	1 (33.33%)	1	0
GO:0071824	protein-DNA complex subunit organization	1 (33.33%)	1	0
GO:0045730	respiratory burst	1 (33.33%)	0	1
GO:0002679	respiratory burst involved in defense response	1 (33.33%)	0	1
GO:0009628	response to abiotic stimulus	1 (33.33%)	0	1
GO:0042221	response to chemical	1 (33.33%)	0	1
GO:0010200	response to chitin	1 (33.33%)	0	1
GO:0009719	response to endogenous stimulus	1 (33.33%)	0	1
GO:0010035	response to inorganic substance	1 (33.33%)	0	1
GO:1901698	response to nitrogen compound	1 (33.33%)	0	1
GO:0010033	response to organic substance	1 (33.33%)	0	1
GO:0010243	response to organonitrogen compound	1 (33.33%)	0	1
GO:1901700	response to oxygen-containing compound	1 (33.33%)	0	1
GO:0050896	response to stimulus	1 (33.33%)	0	1
GO:0006950	response to stress	1 (33.33%)	0	1
GO:0009415	response to water	1 (33.33%)	0	1
GO:0009414	response to water deprivation	1 (33.33%)	0	1
GO:0044763	single-organism cellular process	1 (33.33%)	1	0
GO:0044710	single-organism metabolic process	1 (33.33%)	0	1

Cellular Component (back to top)

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GO	Description	#Associated genes	ptr	stu
GO:0005623	cell	2 (66.67%)	1	1
GO:0044464	cell part	2 (66.67%)	1	1
GO:0005622	intracellular	2 (66.67%)	1	1
GO:0044424	intracellular part	2 (66.67%)	1	1
GO:0032991	macromolecular complex	2 (66.67%)	1	1
GO:0043234	protein complex	2 (66.67%)	1	1
GO:1990104	DNA bending complex	1 (33.33%)	1	0
GO:0044815	DNA packaging complex	1 (33.33%)	1	0
GO:1902494	catalytic complex	1 (33.33%)	0	1
GO:0000785	chromatin	1 (33.33%)	1	0
GO:0044427	chromosomal part	1 (33.33%)	1	0
GO:0005694	chromosome	1 (33.33%)	1	0
GO:0005737	cytoplasm	1 (33.33%)	0	1
GO:0044444	cytoplasmic part	1 (33.33%)	0	1
GO:0005829	cytosol	1 (33.33%)	0	1
GO:0043231	intracellular membrane-bounded organelle	1 (33.33%)	1	0
GO:0043232	intracellular non-membrane-bounded organelle	1 (33.33%)	1	0
GO:0043229	intracellular organelle	1 (33.33%)	1	0
GO:0044446	intracellular organelle part	1 (33.33%)	1	0
GO:0043227	membrane-bounded organelle	1 (33.33%)	1	0
GO:0043228	non-membrane-bounded organelle	1 (33.33%)	1	0
GO:0000786	nucleosome	1 (33.33%)	1	0
GO:0005634	nucleus	1 (33.33%)	1	0
GO:0043226	organelle	1 (33.33%)	1	0
GO:0044422	organelle part	1 (33.33%)	1	0
GO:0032993	protein-DNA complex	1 (33.33%)	1	0
GO:0000151	ubiquitin ligase complex	1 (33.33%)	0	1