PLAZA 3.0 Dicots : Binding Sites

MapMan terms associated with a binding site

Binding site: Matrix_255
Name: cdf3
Description: N/A

#Associated genes: 361
#Associated MapMan terms: 141

Show species without binding site experiments

Click table-header(s) to enable sorting

MapMan	Description	#Associated genes	ath	bra	egr	gma	ptr	ppe	sly	vvi
27	RNA	75 (20.78%)	2	10	13	16	11	9	5	9
27.3	RNA.regulation of transcription	64 (17.73%)	2	9	13	15	6	8	4	7
29	protein	41 (11.36%)	0	5	5	9	9	4	6	3
30	signalling	40 (11.08%)	0	3	6	6	9	9	3	4
29.4	protein.postranslational modification	22 (6.09%)	0	3	2	6	3	3	3	2
30.5	signalling.G-proteins	16 (4.43%)	0	1	3	2	3	4	1	2
28	DNA	14 (3.88%)	2	1	3	3	1	1	1	2
27.3.26	RNA.regulation of transcription.MYB-related transcription factor family	13 (3.60%)	1	4	3	3	0	1	0	1
2	major CHO metabolism	12 (3.32%)	3	1	1	3	1	2	0	1
28.1	DNA.synthesis/chromatin structure	11 (3.05%)	2	1	1	2	1	1	1	2
30.3	signalling.calcium	10 (2.77%)	0	1	2	1	2	3	0	1
27.3.67	RNA.regulation of transcription.putative transcription regulator	9 (2.49%)	0	1	4	3	0	1	0	0
27.3.7	RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family	9 (2.49%)	0	1	3	1	0	1	1	2
29.5	protein.degradation	9 (2.49%)	0	2	1	2	3	0	0	1
29.4.1	protein.postranslational modification.kinase	8 (2.22%)	0	2	1	0	3	1	0	1
31	cell	8 (2.22%)	1	2	1	0	1	1	0	2
33	development	8 (2.22%)	0	1	0	1	4	2	0	0
33.99	development.unspecified	8 (2.22%)	0	1	0	1	4	2	0	0
2.2	major CHO metabolism.degradation	7 (1.94%)	1	0	1	3	0	1	0	1
26	misc	7 (1.94%)	0	1	1	1	2	1	1	0
17	hormone metabolism	6 (1.66%)	0	0	0	3	0	1	1	1
29.2	protein.synthesis	6 (1.66%)	0	0	2	0	1	1	2	0
29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	6 (1.66%)	0	0	0	2	3	1	0	0
2.1	major CHO metabolism.synthesis	5 (1.39%)	2	1	0	0	1	1	0	0
2.1.2	major CHO metabolism.synthesis.starch	5 (1.39%)	2	1	0	0	1	1	0	0
2.2.1	major CHO metabolism.degradation.sucrose	5 (1.39%)	1	0	1	3	0	0	0	0
2.2.1.4	major CHO metabolism.degradation.sucrose.hexokinase	5 (1.39%)	1	0	1	3	0	0	0	0
10	cell wall	5 (1.39%)	0	0	1	1	2	0	1	0
27.2	RNA.transcription	5 (1.39%)	0	0	0	0	1	1	1	2
27.3.11	RNA.regulation of transcription.C2H2 zinc finger family	5 (1.39%)	0	0	1	0	3	0	0	1
27.3.50	RNA.regulation of transcription.General Transcription	5 (1.39%)	0	0	4	1	0	0	0	0
29.4.1.57	protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII	5 (1.39%)	0	1	1	0	2	1	0	0
30.11	signalling.light	5 (1.39%)	0	0	0	3	1	0	0	1
2.1.2.2	major CHO metabolism.synthesis.starch.starch synthase	4 (1.11%)	1	1	0	0	1	1	0	0
3	minor CHO metabolism	4 (1.11%)	0	0	1	0	2	1	0	0
20	stress	4 (1.11%)	1	0	0	1	0	1	1	0
26.2	misc.UDP glucosyl and glucoronyl transferases	4 (1.11%)	0	1	1	0	1	0	1	0
27.1	RNA.processing	4 (1.11%)	0	0	0	0	4	0	0	0
27.3.99	RNA.regulation of transcription.unclassified	4 (1.11%)	0	1	0	1	1	0	0	1
28.1.3	DNA.synthesis/chromatin structure.histone	4 (1.11%)	1	0	1	1	0	1	0	0
30.2	signalling.receptor kinases	4 (1.11%)	0	0	1	0	0	2	1	0
30.7	signalling.14-3-3 proteins	4 (1.11%)	0	1	0	0	2	0	1	0
31.1	cell.organisation	4 (1.11%)	1	0	1	0	0	1	0	1
34	transport	4 (1.11%)	0	1	0	0	1	1	0	1
17.4	hormone metabolism.cytokinin	3 (0.83%)	0	0	0	1	0	1	1	0
21	redox	3 (0.83%)	0	0	1	1	0	1	0	0
21.1	redox.thioredoxin	3 (0.83%)	0	0	1	1	0	1	0	0
27.3.20	RNA.regulation of transcription.G2-like transcription factor family, GARP	3 (0.83%)	1	1	0	0	0	0	1	0
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors	3 (0.83%)	0	0	0	1	1	0	1	0
27.3.47	RNA.regulation of transcription.ELF3	3 (0.83%)	0	0	1	1	0	1	0	0
27.3.6	RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family	3 (0.83%)	0	0	0	1	1	1	0	0
27.3.66	RNA.regulation of transcription.Psudo ARR transcription factor family	3 (0.83%)	0	1	0	2	0	0	0	0
29.2.3	protein.synthesis.initiation	3 (0.83%)	0	0	1	0	1	0	1	0
29.2.4	protein.synthesis.elongation	3 (0.83%)	0	0	1	0	0	1	1	0
29.3	protein.targeting	3 (0.83%)	0	0	0	1	1	0	1	0
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING	3 (0.83%)	0	1	0	1	0	0	0	1
29.5.7	protein.degradation.metalloprotease	3 (0.83%)	0	0	0	0	3	0	0	0
30.2.11	signalling.receptor kinases.leucine rich repeat XI	3 (0.83%)	0	0	0	0	0	2	1	0
34.16	transport.ABC transporters and multidrug resistance systems	3 (0.83%)	0	0	0	0	1	1	0	1
10.7	cell wall.modification	2 (0.55%)	0	0	0	1	1	0	0	0
2.2.2	major CHO metabolism.degradation.starch	2 (0.55%)	0	0	0	0	0	1	0	1
11	lipid metabolism	2 (0.55%)	0	0	0	1	0	0	1	0
11.9	lipid metabolism.lipid degradation	2 (0.55%)	0	0	0	1	0	0	1	0
17.4.2	hormone metabolism.cytokinin.signal transduction	2 (0.55%)	0	0	0	1	0	0	1	0
20.1	stress.biotic	2 (0.55%)	1	0	0	0	0	0	1	0
20.2	stress.abiotic	2 (0.55%)	0	0	0	1	0	1	0	0
20.2.1	stress.abiotic.heat	2 (0.55%)	0	0	0	1	0	1	0	0
22	polyamine metabolism	2 (0.55%)	0	0	0	2	0	0	0	0
22.1	polyamine metabolism.synthesis	2 (0.55%)	0	0	0	2	0	0	0	0
22.1.6	polyamine metabolism.synthesis.spermidine synthase	2 (0.55%)	0	0	0	2	0	0	0	0
23	nucleotide metabolism	2 (0.55%)	0	1	0	0	1	0	0	0
23.3	nucleotide metabolism.salvage	2 (0.55%)	0	1	0	0	1	0	0	0
23.3.2	nucleotide metabolism.salvage.nucleoside kinases	2 (0.55%)	0	1	0	0	1	0	0	0
23.3.2.2	nucleotide metabolism.salvage.nucleoside kinases.uridine kinase	2 (0.55%)	0	1	0	0	1	0	0	0
26.8	misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases	2 (0.55%)	0	0	0	0	1	1	0	0
27.3.25	RNA.regulation of transcription.MYB domain transcription factor family	2 (0.55%)	0	0	0	0	1	1	0	0
27.4	RNA.RNA binding	2 (0.55%)	0	1	0	1	0	0	0	0
28.2	DNA.repair	2 (0.55%)	0	0	2	0	0	0	0	0
29.2.1.1.1.1.7	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S7	2 (0.55%)	0	0	1	0	1	0	0	0
29.3.4	protein.targeting.secretory pathway	2 (0.55%)	0	0	0	0	1	0	1	0
3.5	minor CHO metabolism.others	2 (0.55%)	0	0	0	0	1	1	0	0
31.3	cell.cycle	2 (0.55%)	0	1	0	0	0	0	0	1
10.1	cell wall.precursor synthesis	1 (0.28%)	0	0	0	0	1	0	0	0
10.1.2	cell wall.precursor synthesis.UGE	1 (0.28%)	0	0	0	0	1	0	0	0
10.6	cell wall.degradation	1 (0.28%)	0	0	0	0	0	0	1	0
10.6.2	cell wall.degradation.mannan-xylose-arabinose-fucose	1 (0.28%)	0	0	0	0	0	0	1	0
10.8	cell wall.pectin*esterases	1 (0.28%)	0	0	1	0	0	0	0	0
10.8.1	cell wall.pectin*esterases.PME	1 (0.28%)	0	0	1	0	0	0	0	0
11.9.2	lipid metabolism.lipid degradation.lipases	1 (0.28%)	0	0	0	1	0	0	0	0
11.9.2.1	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	1 (0.28%)	0	0	0	1	0	0	0	0
11.9.3	lipid metabolism.lipid degradation.lysophospholipases	1 (0.28%)	0	0	0	0	0	0	1	0
11.9.3.2	lipid metabolism.lipid degradation.lysophospholipases.carboxylesterase	1 (0.28%)	0	0	0	0	0	0	1	0
17.1	hormone metabolism.abscisic acid	1 (0.28%)	0	0	0	0	0	0	0	1
17.1.3	hormone metabolism.abscisic acid.induced-regulated-responsive-activated	1 (0.28%)	0	0	0	0	0	0	0	1
17.2	hormone metabolism.auxin	1 (0.28%)	0	0	0	1	0	0	0	0
17.2.2	hormone metabolism.auxin.signal transduction	1 (0.28%)	0	0	0	1	0	0	0	0
17.4.1	hormone metabolism.cytokinin.synthesis-degradation	1 (0.28%)	0	0	0	0	0	1	0	0
17.6	hormone metabolism.gibberelin	1 (0.28%)	0	0	0	1	0	0	0	0
17.6.2	hormone metabolism.gibberelin.signal transduction	1 (0.28%)	0	0	0	1	0	0	0	0
2.1.2.3	major CHO metabolism.synthesis.starch.starch branching	1 (0.28%)	1	0	0	0	0	0	0	0
2.2.2.1	major CHO metabolism.degradation.starch.starch cleavage	1 (0.28%)	0	0	0	0	0	1	0	0
2.2.2.1.2	major CHO metabolism.degradation.starch.starch cleavage.beta amylase	1 (0.28%)	0	0	0	0	0	1	0	0
2.2.2.2	major CHO metabolism.degradation.starch.starch phosphorylase	1 (0.28%)	0	0	0	0	0	0	0	1
25.7	C1-metabolism.GTP cyclohydrolase I	1 (0.28%)	0	0	1	0	0	0	0	0
26.12	misc.peroxidases	1 (0.28%)	0	0	0	1	0	0	0	0
27.1.2	RNA.processing.RNA helicase	1 (0.28%)	0	0	0	0	1	0	0	0
27.3.24	RNA.regulation of transcription.MADS box transcription factor family	1 (0.28%)	0	0	0	0	0	0	1	0
27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1 (0.28%)	0	0	0	0	0	1	0	0
27.3.36	RNA.regulation of transcription.Argonaute	1 (0.28%)	0	0	0	1	0	0	0	0
27.3.4	RNA.regulation of transcription.ARF, Auxin Response Factor family	1 (0.28%)	0	0	0	0	0	0	0	1
27.3.5	RNA.regulation of transcription.ARR	1 (0.28%)	0	0	0	0	0	0	0	1
27.3.57	RNA.regulation of transcription.JUMONJI family	1 (0.28%)	0	0	1	0	0	0	0	0
27.3.62	RNA.regulation of transcription.Nucleosome/chromatin assembly factor group	1 (0.28%)	0	0	0	1	0	0	0	0
27.3.80	RNA.regulation of transcription.zf-HD	1 (0.28%)	0	0	0	0	0	1	0	0
28.1.3.2	DNA.synthesis/chromatin structure.histone.core	1 (0.28%)	1	0	0	0	0	0	0	0
28.1.3.2.1	DNA.synthesis/chromatin structure.histone.core.H2A	1 (0.28%)	1	0	0	0	0	0	0	0
28.99	DNA.unspecified	1 (0.28%)	0	0	0	1	0	0	0	0
29.1	protein.aa activation	1 (0.28%)	0	0	0	0	1	0	0	0
29.1.9	protein.aa activation.valine-tRNA ligase	1 (0.28%)	0	0	0	0	1	0	0	0
29.2.1.1.1.1.12	protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S12	1 (0.28%)	0	0	0	0	1	0	0	0
29.2.1.1.2.2.2	protein.synthesis.ribosomal protein.prokaryotic.mitochondrion.50S subunit.L2	1 (0.28%)	0	0	0	0	0	0	1	0
29.2.1.2.1.3	protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S3	1 (0.28%)	0	0	0	0	1	0	0	0
29.3.2	protein.targeting.mitochondria	1 (0.28%)	0	0	0	1	0	0	0	0
29.3.4.4	protein.targeting.secretory pathway.plasma membrane	1 (0.28%)	0	0	0	0	0	0	1	0
29.3.4.99	protein.targeting.secretory pathway.unspecified	1 (0.28%)	0	0	0	0	1	0	0	0
29.5.11	protein.degradation.ubiquitin	1 (0.28%)	0	1	0	0	0	0	0	0
29.5.11.20	protein.degradation.ubiquitin.proteasom	1 (0.28%)	0	1	0	0	0	0	0	0
29.5.5	protein.degradation.serine protease	1 (0.28%)	0	1	0	0	0	0	0	0
29.5.9	protein.degradation.AAA type	1 (0.28%)	0	0	0	1	0	0	0	0
3.1	minor CHO metabolism.raffinose family	1 (0.28%)	0	0	1	0	0	0	0	0
3.1.1	minor CHO metabolism.raffinose family.galactinol synthases	1 (0.28%)	0	0	1	0	0	0	0	0
3.1.1.2	minor CHO metabolism.raffinose family.galactinol synthases.putative	1 (0.28%)	0	0	1	0	0	0	0	0
3.6	minor CHO metabolism.callose	1 (0.28%)	0	0	0	0	1	0	0	0
24	Biodegradation of Xenobiotics	1 (0.28%)	0	0	0	0	0	0	1	0
25	C1-metabolism	1 (0.28%)	0	0	1	0	0	0	0	0
30.10	signalling.phosphorelay	1 (0.28%)	0	0	0	0	1	0	0	0
30.2.99	signalling.receptor kinases.misc	1 (0.28%)	0	0	1	0	0	0	0	0
31.2	cell.division	1 (0.28%)	0	1	0	0	0	0	0	0
31.3.1	cell.cycle.peptidylprolyl isomerase	1 (0.28%)	0	1	0	0	0	0	0	0
31.4	cell.vesicle transport	1 (0.28%)	0	0	0	0	1	0	0	0
34.1	transport.p- and v-ATPases	1 (0.28%)	0	1	0	0	0	0	0	0