PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_686
Name: LFY
Description: Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins

Sequence: TNNNNCCANTGTNNNNT
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_159	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	94.12%
Motif_289	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	94.12%
Motif_504	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	94.12%
Motif_527	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	88.24%
Motif_635	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	88.24%
Matrix_118	PIF3_2	Direct targeting of light signals to a promoter element-bound transcription factor	65.80%
Matrix_345	POC1	Not Available	65.80%
Matrix_403	BZR1	Not Available	64.47%
Matrix_338	AP2	Not Available	63.23%
Matrix_443	AGL15	Not Available	63.05%
Matrix_24	POC1	Not Available	62.84%
Matrix_15	PIF3_1	Direct targeting of light signals to a promoter element-bound transcription factor	62.84%
Matrix_359	FLC	Not Available	62.68%
Matrix_264	ATAREB1	Not Available	62.13%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	61.66%
Matrix_214	AP1	Not Available	61.48%
Matrix_194	HYH; HY5	Not Available	61.43%
Matrix_55	PIF3	Not Available	61.05%
Matrix_467	RAV1	Not Available	60.98%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	60.98%
Matrix_477	RAV1	Not Available	60.98%
Matrix_305	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	59.81%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	59.53%
Matrix_466	PRR5	Not Available	59.45%
Matrix_153	AP2	Not Available	59.44%
Motif_691	HBOXCONSENSUSPVCHS	H-box; Consensus sequence of H-boxes found in bean chs15 gene promoter; Essential for both light regulation and elicitor induction; Similar sequence was found in tobacco Tnt1 retrotransposon promoter (LTR); Tnt1 is induced by wounding and by abiotic stress; KAP-2 binds to the H-box and stimulates transcription from a promoter harboring the H-box; KAP-2 shares sequence similarity to the large subunit of mammalian Ku autoantigen	59.42%
Matrix_251	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	59.26%
Matrix_19	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	58.14%
Matrix_191	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	57.76%
Matrix_499	ARR18	Not Available	57.67%
Matrix_77	PRR5	Not Available	56.83%
Motif_180	AGL2 binding site motif	Binding consensus sequence of Arabidopsis AGL2 (AGAMOUS-like 2); AGL2 contains MADS domain; AGL2 binds DNA as a dimer	56.71%
Matrix_104	PI	Not Available	56.12%
Matrix_213	ATHB22	Not Available	56.05%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	55.67%
Matrix_369	AT2G18300	Not Available	55.62%
Matrix_2	SEP4	Not Available	55.60%
Matrix_310	AGL3	The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein	55.60%
Matrix_417	SEP4	Not Available	55.60%
Matrix_222	AGL2	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	55.53%
Matrix_28	SEP1	Not Available	55.53%
Matrix_428	SEP4	Not Available	55.49%
Matrix_514	DYT1	Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development	55.13%
Motif_30	HSELIKENTACIDICPR1	HSE-like motif in -56 region of acidic PR1 gene of tobacco; not found in basic PR1 gene	54.86%
Matrix_49	FHY3/FAR1	Not Available	54.68%
Matrix_438	AtbZIP63	Not Available	54.02%
Matrix_353	HAT5	Not Available	53.83%
Motif_110	AGATCONSENSUS	Binding consensus sequence for the product of the Arabidopsis floral homeotic gene AGAMOUS (AG); AG protein contains a region similar to the DNA binding domain of SRF and MCM1; The consensus sequence contains a CArG box; AG protein is a putative transcription factor for floral genes; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development	53.67%
Matrix_105	SPL14	Not Available	53.65%
Matrix_413	RAV1	Not Available	53.41%
Matrix_298	RAV1	Not Available	53.41%
Matrix_304	AtSPL3	Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains	53.36%
Matrix_342	SPL14	Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon Resonance	53.34%
Matrix_172	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	53.31%
Matrix_352	LEC2	Not Available	53.11%
Matrix_440	LFY	Not Available	52.83%
Matrix_39	AP1	Not Available	52.76%
Matrix_123	FUSCA3	Not Available	52.64%
Matrix_107	AtSPL3	Not Available	52.47%
Matrix_226	GATA1	Not Available	52.24%
Motif_346	SND1; VND6; VND7; NST1; NST2	Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis	51.92%
Motif_455	AG binding site motif	Nucleotide sequences recognized by the AGAMOUS MADS domain of Arabidopsis thaliana in vitro	51.90%
Matrix_192	FHY3/FAR1	Not Available	51.64%
Matrix_68	AtMYB77	More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14: 273-84	51.60%
Matrix_47	AtMYB77	Not Available	51.60%
Matrix_95	LFY	Not Available	51.42%
Matrix_458	MGP; AT1G14580; AtIDD7; AtIDD5; AtIDD4; AtIDD12; JKD; AT5G66730	Not Available	51.37%
Matrix_43	AG	Not Available	51.17%
Matrix_98	AG	Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS	51.17%
Matrix_445	AG	Not Available	51.17%
Matrix_151	ASIL1	Not Available	50.90%
Matrix_122	ABF1; AREB2	Not Available	50.84%
Matrix_386	AGL1	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	50.81%
Matrix_121	SHP1	Not Available	50.81%
Matrix_301	PIL5	Not Available	50.54%
Motif_395	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	50.33%
Matrix_480	BES1	Not Available	50.17%
Matrix_59	AT4G00238; AT4G00250	Not Available	50.16%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	50.06%