PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_244
Name: DREB2C
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_385	DEAR4	Not Available	91.84%
Matrix_394	DREB_U	Not Available	91.12%
Matrix_92	AT1G33760	Not Available	89.11%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	85.21%
Matrix_61	ATCBF3	Not Available	84.67%
Matrix_409	DEAR3	Not Available	76.77%
Motif_32	DREB2A; DREB1A; AtTINY2; DREB1C; DREB1B	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	76.69%
Matrix_138	RRTF1	Not Available	76.53%
Matrix_119	RRTF1	Not Available	75.97%
Matrix_288	RAP2.3	Not Available	75.44%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	74.20%
Matrix_50	ATERF14; AT5G43410	Not Available	73.92%
Matrix_478	AT1G01250	Not Available	73.80%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	73.53%
Matrix_363	RAP2.3	Not Available	73.52%
Matrix_224	ERF1	Not Available	73.02%
Matrix_448	ATERF6	Not Available	72.60%
Motif_620	DREB1&2 BS in rd29a	Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor	72.16%
Matrix_57	WIN1; SHN3; SHN2	Not Available	71.93%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	71.52%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	70.81%
Motif_509	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	70.45%
Matrix_355	ERF10; ERF11	Not Available	70.35%
Matrix_433	ATERF1	Not Available	70.11%
Matrix_387	ORA47	Not Available	70.00%
Motif_89	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	69.74%
Matrix_321	HRD	Not Available	69.51%
Motif_394	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	69.40%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	68.98%
Matrix_292	FTQ4	Not Available	68.93%
Matrix_277	RAP2.6	Not Available	68.25%
Motif_319	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	66.93%
Matrix_362	DEAR3	Not Available	66.56%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	66.43%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	65.60%
Matrix_426	CRF1; CRF2	Not Available	64.46%
Motif_144	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	64.02%
Motif_54	LTREATLTI78	Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana	63.93%
Matrix_265	NGA3	Not Available	63.74%
Matrix_193	RAV1	Not Available	63.74%
Matrix_456	bZIP60	Not Available	63.33%
Matrix_151	ASIL1	Not Available	63.27%
Matrix_253	ETT	Not Available	63.15%
Matrix_261	ATERF-1	Not Available	62.80%
Matrix_196	TCP20; AT5G41030	Not Available	62.61%
Matrix_452	MYB46	Not Available	62.34%
Matrix_139	OBF5	Not Available	62.24%
Motif_607	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	62.16%
Matrix_506	DRNL; ATERF-4	Not Available	62.04%
Matrix_484	ATERF13	Not Available	61.43%
Matrix_91	CRF3	Not Available	61.40%
Motif_2	ACGTSEED2	ACGT motif related to seed expression; Gene: French bean phaseolin; transacting factor: 02	61.09%
Motif_399	UPRMOTIFIAT	Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.	60.96%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	60.91%
Matrix_147	ERF3; AT1G80580	Not Available	60.84%
Matrix_86	CRF5; CRF6; CRF4	Not Available	60.73%
Motif_99	DREB1A; DREB1C; DREB1B	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit	60.49%
Matrix_493	AT1G22985; AT1G71130	Not Available	60.42%
Motif_478	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	60.33%
Matrix_329	WRKY12	Not Available	59.89%
Matrix_410	TOE2	Not Available	59.62%
Matrix_146	ORA47	Not Available	59.47%
Matrix_45	DRN	Not Available	59.37%
Matrix_59	AT4G00238; AT4G00250	Not Available	59.27%
Motif_402	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	59.17%
Matrix_293	WRKY38	Not Available	59.04%
Matrix_295	ERF1	Not Available	58.98%
Motif_100	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	58.93%
Motif_140	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	58.93%
Matrix_378	ATERF1	Not Available	58.87%
Matrix_475	AT5G64220	Not Available	58.76%
Matrix_171	LBD3; LBD4	Not Available	58.54%
Matrix_343	AT2G33710	Not Available	58.29%
Matrix_374	AT5G07580; AT5G61590	Not Available	58.21%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	58.14%
Matrix_5	AT5G51190; ERF104	Not Available	57.93%
Matrix_420	ANAC58	Not Available	57.59%
Matrix_23	ANAC46	Not Available	57.57%
Matrix_272	DEAR4	Not Available	57.25%
Motif_203	bZIP23; bZIP19	Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency	57.08%
Matrix_360	ORA59	Not Available	56.87%
Motif_50	AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses	56.85%
Motif_107	O2F2BE2S1	opaque-2 recognition site F2 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F2 is a new O2-binding sequence related to the O2 target sites of the Coix alpha-coxin, the maize b-32 genes and the AP-1 pseudopalindrome	56.67%
Motif_95	UPRE2AT	XBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR	56.67%
Matrix_393	REM1	Not Available	56.53%
Matrix_430	TOE2	Not Available	56.41%
Matrix_332	SPT; ALC	Not Available	56.33%
Motif_60	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	56.29%
Matrix_234	RAP2.3	Not Available	56.20%
Motif_278	CELLCYCLESC	cell cycle box found in URS2 (-940/-200) of HO gene of S.cerevisiae; cell-cycle-specific activation of transcription	56.19%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	56.17%
Motif_625	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	56.03%
Motif_127	SBOXATRBCS	S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5	55.95%
Motif_405	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	55.93%
Matrix_376	WRKY45	Not Available	55.83%
Motif_311	ANAC019; ANAC055; ANAC072	Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter	55.83%
Motif_457	AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	55.78%
Matrix_446	LBD16	Not Available	55.76%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	55.63%
Matrix_467	RAV1	Not Available	55.63%
Matrix_477	RAV1	Not Available	55.63%
Matrix_373	E2FE	Not Available	55.60%
Motif_643	DRE2COREZMRAB17	DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA	55.57%
Matrix_402	TOE1	Not Available	55.29%
Matrix_509	LEC2	Not Available	55.24%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	55.19%
Matrix_26	ATMYB3; MYB24	Not Available	55.11%
Matrix_259	AT1G50680; AT1G51120	Not Available	55.04%
Matrix_20	ANAC030; NST1; NAC066	Not Available	54.98%
Matrix_282	bZIP60	Not Available	54.91%
Matrix_334	AT3G23230	Not Available	54.90%
Matrix_473	RRTF1	Not Available	54.70%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	54.68%
Motif_444	OCTAMOTIF2	Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes	54.66%
Matrix_462	ATERF-8	Not Available	54.63%
Matrix_260	CAMTA3	Not Available	54.55%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	54.53%
Matrix_479	TOE1	Not Available	54.38%
Matrix_517	ERF12	Not Available	54.37%
Motif_454	DRECRTCOREAT	Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)	54.34%
Motif_233	DRE1COREZMRAB17	DRE1 core found in maize rab17 gene promoter; DRE1 was protected, in in vivo footprinting, by a protein in embryos specifically, but in leaves, was protected when was treated with ABA and drought; rab17 is expressed during late embryogenesis, and is induced by ABA	54.25%
Matrix_406	ATERF-7	Not Available	54.08%
Matrix_141	AT3G25990	Not Available	54.07%
Matrix_237	MYB55	Not Available	54.00%
Motif_259	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	53.99%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	53.89%
Matrix_223	MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1	Not Available	53.87%
Motif_209	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	53.78%
Motif_621	bZIP23; bZIP19	Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency	53.70%
Matrix_397	GT2L	Not Available	53.69%
Motif_368	CBF1 BS in cor15a	Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs	53.63%
Matrix_344	ATERF15; AT4G18450	Not Available	53.61%
Motif_101	MYB61	AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network	53.61%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	53.51%
Matrix_186	FHY3	Not Available	53.34%
Matrix_252	RAP2.6	Not Available	53.34%
Matrix_228	TGA2	Not Available	53.33%
Matrix_116	ANAC55	Not Available	53.32%
Motif_687	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	53.00%
Matrix_500	WRKY43	Not Available	52.99%
Matrix_128	TGA2	Not Available	52.96%
Motif_67	LS5ATPR1	LS5; A negative regulatory element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA2; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense response; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors	52.69%
Matrix_287	ERF2	Not Available	52.68%
Matrix_38	SPL14	Not Available	52.59%
Matrix_480	BES1	Not Available	52.56%
Motif_606	NAPINMOTIFBN	Sequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seeds	52.42%
Motif_293	NONAMERATH4	Nonamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene	52.37%
Motif_666	MYB binding site promoter	A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes	52.33%
Matrix_249	WRKY11	Not Available	52.31%
Matrix_432	AT1G77920	Not Available	52.31%
Matrix_167	ZAT6	Not Available	52.27%
Motif_265	GCAACREPEATZMZEIN	GCAAC repeat found in the 22bp recognition site for beta-1 factor in the promoter of beta-zein (prolamin type) gene of maize; GCAAC is the core recognition sequence of the protein encoded by the retroviral oncogene myb	52.20%
Matrix_12	EIN3; EIL2	Not Available	52.18%
Matrix_150	UNE10; PIF7	Not Available	52.10%
Matrix_192	FHY3/FAR1	Not Available	52.06%
Motif_37	AtERF-4	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	52.01%
Motif_535	ACIPVPAL2	ACI element found at -83 to -74 of bean PAL2 promoter; AC-rich element; ACI element is required for vascular-specific gene expression; See also ACIIPVPAL2 and ACIIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissue-specific expression of pAL2 gene	51.98%
Matrix_389	ILR3	Not Available	51.93%
Motif_544	CACGCAATGMGH3	Sequence found in D4 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein	51.89%
Matrix_476	bHLH115; bHLH34	Not Available	51.83%
Matrix_322	NST3; ANAC015; BRN2	Not Available	51.82%
Matrix_113	ABI5	Not Available	51.80%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	51.79%
Matrix_84	AtGRF6	Not Available	51.77%
Matrix_46	AT4G21895	Not Available	51.66%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	51.62%
Matrix_166	TGA4	Not Available	51.59%
Matrix_142	ZFP8	Not Available	51.53%
Matrix_122	ABF1; AREB2	Not Available	51.51%
Motif_97	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	51.48%
Motif_374	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	51.40%
Motif_685	PALINDROMICCBOXGM	Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence	51.40%
Matrix_319	TEM1	Not Available	51.38%
Motif_393	AUXREPSIAA4	AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems	51.37%
Matrix_311	TGA1	Not Available	51.36%
Matrix_233	MYC3	Not Available	51.28%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.27%
Matrix_341	HMGA	Not Available	51.26%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	51.23%
Matrix_173	ZAP1	Not Available	51.21%
Matrix_169	E2F1	Not Available	51.21%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	51.19%
Matrix_308	INO	Not Available	50.73%
Motif_22	RYREPEATLEGUMINBOX	RY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybean	50.49%
Matrix_243	RAP2.12; RAP2.2	Not Available	50.47%
Matrix_258	WOX13	Not Available	50.43%
Matrix_518	AT2G21230	Not Available	50.41%
Motif_219	E2Fa	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	50.38%
Matrix_380	ATMYR1	Not Available	50.35%
Matrix_273	ANAC55	Not Available	50.34%
Motif_94	UP1ATMSD	Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	50.28%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	50.21%
Matrix_101	ERF5	Not Available	50.17%
Matrix_145	GBF4; AT5G44080	Not Available	50.12%
Motif_128	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	50.12%
Matrix_291	EDF3	Not Available	50.10%
Matrix_120	BEE2	Not Available	50.05%