PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_193
Name: RAV1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_265	NGA3	Not Available	100.00%
Matrix_430	TOE2	Not Available	75.14%
Matrix_479	TOE1	Not Available	73.87%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	71.33%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	70.65%
Matrix_113	ABI5	Not Available	70.25%
Matrix_311	TGA1	Not Available	69.20%
Matrix_92	AT1G33760	Not Available	68.90%
Matrix_332	SPT; ALC	Not Available	68.85%
Matrix_151	ASIL1	Not Available	68.43%
Matrix_128	TGA2	Not Available	68.10%
Matrix_355	ERF10; ERF11	Not Available	66.17%
Matrix_432	AT1G77920	Not Available	65.95%
Matrix_59	AT4G00238; AT4G00250	Not Available	65.67%
Matrix_321	HRD	Not Available	65.32%
Matrix_166	TGA4	Not Available	65.27%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	65.27%
Matrix_57	WIN1; SHN3; SHN2	Not Available	65.13%
Matrix_493	AT1G22985; AT1G71130	Not Available	65.08%
Matrix_91	CRF3	Not Available	65.01%
Matrix_120	BEE2	Not Available	64.80%
Matrix_410	TOE2	Not Available	64.79%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	64.33%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	64.32%
Matrix_286	GATA7	Not Available	64.07%
Matrix_244	DREB2C	Not Available	63.74%
Matrix_323	BIM3	Not Available	63.66%
Matrix_261	ATERF-1	Not Available	63.65%
Matrix_402	TOE1	Not Available	63.55%
Matrix_472	ZN_C2_H2	Not Available	63.17%
Matrix_465	MYC4	Not Available	62.89%
Matrix_171	LBD3; LBD4	Not Available	62.75%
Motif_101	MYB61	AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network	62.72%
Matrix_226	GATA1	Not Available	62.71%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	62.67%
Matrix_409	DEAR3	Not Available	62.62%
Matrix_141	AT3G25990	Not Available	62.62%
Matrix_259	AT1G50680; AT1G51120	Not Available	62.54%
Matrix_129	ABF1	Not Available	62.50%
Matrix_385	DEAR4	Not Available	62.26%
Matrix_287	ERF2	Not Available	62.24%
Matrix_330	MYC2; TT8	Not Available	62.11%
Matrix_308	INO	Not Available	62.10%
Matrix_449	BIM2	Not Available	62.09%
Matrix_394	DREB_U	Not Available	61.94%
Matrix_374	AT5G07580; AT5G61590	Not Available	61.92%
Matrix_322	NST3; ANAC015; BRN2	Not Available	61.86%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	61.81%
Matrix_233	MYC3	Not Available	61.45%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	61.32%
Matrix_335	HSFB2A	Not Available	61.28%
Matrix_101	ERF5	Not Available	61.21%
Motif_92	ABREATRD22	ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22	61.13%
Matrix_477	RAV1	Not Available	60.78%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	60.78%
Matrix_467	RAV1	Not Available	60.78%
Matrix_447	RVE1	Not Available	60.75%
Matrix_389	ILR3	Not Available	60.57%
Matrix_341	HMGA	Not Available	60.54%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	60.46%
Matrix_478	AT1G01250	Not Available	60.24%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	60.17%
Matrix_448	ATERF6	Not Available	60.08%
Matrix_195	GATA2; GATA4	Not Available	59.98%
Matrix_109	GBF3	Not Available	59.82%
Matrix_61	ATCBF3	Not Available	59.76%
Matrix_452	MYB46	Not Available	59.61%
Matrix_116	ANAC55	Not Available	59.60%
Matrix_446	LBD16	Not Available	59.34%
Matrix_437	MYC2	Not Available	59.32%
Matrix_50	ATERF14; AT5G43410	Not Available	59.30%
Matrix_489	RAV1	Not Available	59.18%
Matrix_204	WOX13	Not Available	59.03%
Matrix_227	AT1G64620	Not Available	58.94%
Matrix_174	ZAT2	Not Available	58.88%
Matrix_408	GATA12	Not Available	58.78%
Matrix_362	DEAR3	Not Available	58.76%
Matrix_433	ATERF1	Not Available	58.48%
Matrix_243	RAP2.12; RAP2.2	Not Available	58.41%
Matrix_334	AT3G23230	Not Available	58.33%
Matrix_212	ATHB-12	Not Available	58.24%
Matrix_80	BIM1	Not Available	58.23%
Matrix_46	AT4G21895	Not Available	58.21%
Matrix_320	MYC4	Not Available	57.96%
Matrix_60	AT1G01260; AT5G57150	Not Available	57.70%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	57.67%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	57.67%
Matrix_150	UNE10; PIF7	Not Available	57.45%
Matrix_142	ZFP8	Not Available	57.44%
Matrix_37	GATA27	Not Available	57.34%
Matrix_296	GBF2	Not Available	57.34%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	57.28%
Matrix_288	RAP2.3	Not Available	57.18%
Matrix_192	FHY3/FAR1	Not Available	56.99%
Matrix_300	bZIP68; bZIP16	Not Available	56.97%
Motif_666	MYB binding site promoter	A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes	56.91%
Matrix_396	AP3	Not Available	56.88%
Matrix_502	AT3G13040	Not Available	56.85%
Matrix_17	WRKY22	Not Available	56.84%
Matrix_70	GATA26	Not Available	56.79%
Matrix_81	YAB1	Not Available	56.74%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	56.64%
Matrix_53	MYC3	Not Available	56.62%
Matrix_271	AT3G16350	Not Available	56.61%
Matrix_20	ANAC030; NST1; NAC066	Not Available	56.55%
Matrix_230	ARR11	Not Available	56.53%
Matrix_12	EIN3; EIL2	Not Available	56.45%
Matrix_273	ANAC55	Not Available	56.45%
Matrix_363	RAP2.3	Not Available	56.44%
Matrix_64	PIF5	Not Available	56.37%
Matrix_476	bHLH115; bHLH34	Not Available	56.27%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	56.27%
Matrix_169	E2F1	Not Available	56.24%
Matrix_135	ABI3	Not Available	56.21%
Matrix_277	RAP2.6	Not Available	56.21%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	56.20%
Matrix_55	PIF3	Not Available	56.17%
Matrix_260	CAMTA3	Not Available	56.15%
Matrix_145	GBF4; AT5G44080	Not Available	56.06%
Matrix_10	STY1	Not Available	56.04%
Matrix_420	ANAC58	Not Available	56.03%
Matrix_206	CUC1; ANAC100	Not Available	56.02%
Matrix_399	TGA1	Not Available	56.01%
Matrix_93	YAB5	Not Available	55.97%
Matrix_397	GT2L	Not Available	55.91%
Motif_95	UPRE2AT	XBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR	55.84%
Matrix_434	ARR11	Not Available	55.84%
Matrix_456	bZIP60	Not Available	55.81%
Matrix_343	AT2G33710	Not Available	55.78%
Matrix_217	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	55.62%
Matrix_331	GBF1	Not Available	55.60%
Matrix_463	HAT3.1	Not Available	55.54%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	55.48%
Matrix_187	CDC5	Not Available	55.41%
Matrix_349	CDC5	Not Available	55.41%
Matrix_119	RRTF1	Not Available	55.36%
Matrix_313	ATMYB65; MYB33	Not Available	55.32%
Matrix_438	AtbZIP63	Not Available	55.28%
Matrix_369	AT2G18300	Not Available	55.25%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	55.15%
Matrix_176	MYB98	Not Available	55.14%
Matrix_340	HSFC1	Not Available	55.00%
Matrix_139	OBF5	Not Available	54.96%
Motif_200	GBOXLERBCS	G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF	54.79%
Matrix_350	ARR14	Not Available	54.79%
Matrix_328	AT1G76580	Not Available	54.75%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	54.73%
Matrix_319	TEM1	Not Available	54.72%
Matrix_188	SPL4	Not Available	54.66%
Matrix_104	PI	Not Available	54.44%
Motif_244	ABRE-like binding site motif	Not Available	54.43%
Matrix_134	ABF1	Not Available	54.34%
Matrix_370	WRKY50; WRKY51	Not Available	54.29%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	54.27%
Matrix_406	ATERF-7	Not Available	54.26%
Matrix_354	AHL12	Not Available	54.24%
Matrix_415	WRKY27	Not Available	54.16%
Matrix_75	WRKY29	Not Available	54.16%
Matrix_26	ATMYB3; MYB24	Not Available	53.97%
Matrix_223	MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1	Not Available	53.92%
Matrix_185	AHL25	Not Available	53.89%
Matrix_168	AHL25	Not Available	53.81%
Matrix_307	RGL2; RGL3	Not Available	53.80%
Motif_4	NAP	An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves	53.72%
Motif_232	ABADESI1	Responsive to ABA and desiccation; Motif I of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1	53.67%
Matrix_475	AT5G64220	Not Available	53.64%
Matrix_111	ABF3	Not Available	53.62%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	53.58%
Matrix_143	GATA14; GATA6; GATA5	Not Available	53.56%
Matrix_159	TEM2	Not Available	53.55%
Matrix_400	MYB46	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	53.54%
Matrix_486	MYB83	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	53.54%
Motif_254	MYB46; MYB83	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	53.54%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	53.45%
Matrix_97	APRR2	Not Available	53.42%
Motif_361	SORLREP4AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; Common in circadian-regulated promoters; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	53.37%
Matrix_451	STY1	Not Available	53.35%
Matrix_72	CDF2	Not Available	53.33%
Matrix_431	ATHB21; HB-3	Not Available	53.28%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	53.15%
Matrix_106	AT5G47390	Not Available	53.03%
Matrix_521	AHL20	Not Available	52.99%
Motif_388	CPRFPCCHS; AtbZIP1	BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	52.96%
Matrix_462	ATERF-8	Not Available	52.92%
Matrix_291	EDF3	Not Available	52.91%
Matrix_162	AtPHR1	Not Available	52.84%
Matrix_122	ABF1; AREB2	Not Available	52.83%
Matrix_382	AT3G04850	Not Available	52.76%
Matrix_491	AT1G68670; AT3G25790	Not Available	52.75%
Matrix_181	Dof5.7	Not Available	52.74%
Matrix_393	REM1	Not Available	52.74%
Matrix_422	TOE1	Not Available	52.73%
Matrix_513	SOL1; TSO1; TCX2	Not Available	52.73%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	52.72%
Matrix_27	ATAIB; ATNIG1	Not Available	52.59%
Matrix_329	WRKY12	Not Available	52.57%
Matrix_506	DRNL; ATERF-4	Not Available	52.56%
Matrix_384	ATWRKY17	Not Available	52.55%
Matrix_293	WRKY38	Not Available	52.47%
Matrix_333	GATA3	Not Available	52.46%
Matrix_442	AT5G62260	Not Available	52.42%
Matrix_221	SPL7	Not Available	52.39%
Matrix_153	AP2	Not Available	52.35%
Matrix_84	AtGRF6	Not Available	52.34%
Matrix_138	RRTF1	Not Available	52.30%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	52.25%
Matrix_23	ANAC46	Not Available	52.17%
Matrix_249	WRKY11	Not Available	52.15%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	52.14%
Matrix_90	BEE1; BEE3; AT3G07340; AT5G48560; AT5G50915	Not Available	52.13%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	52.07%
Motif_642	SEF1MOTIF	SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene	52.07%
Matrix_14	ZCW32; AT5G62610	Not Available	52.05%
Matrix_492	ETT	Not Available	52.02%
Matrix_1	TOE2	Not Available	51.96%
Matrix_418	KNAT6; KNAT2	Not Available	51.92%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	51.90%
Matrix_440	LFY	Not Available	51.84%
Matrix_336	AT5G08520	Not Available	51.82%
Motif_166	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	51.78%
Matrix_504	WRKY40	Not Available	51.75%
Matrix_247	PIF3	Not Available	51.74%
Motif_83	CIACADIANLELHC	Region necessary for circadian expression of tomato Lhc gene	51.74%
Matrix_416	ASL5	Not Available	51.73%
Matrix_500	WRKY43	Not Available	51.70%
Matrix_3	WRKY48	Not Available	51.62%
Matrix_240	AT4G29000	Not Available	51.61%
Matrix_218	TIFY2B; TIFY1	Not Available	51.54%
Matrix_196	TCP20; AT5G41030	Not Available	51.53%
Matrix_99	DOF4.7	Not Available	51.51%
Matrix_203	GATA9; GATA12	Not Available	51.47%
Matrix_69	AT2G03500	Not Available	51.46%
Matrix_450	SPL7	Not Available	51.46%
Matrix_255	cdf3	Not Available	51.37%
Matrix_157	LHY; RVE2	Not Available	51.35%
Matrix_88	AHL12	Not Available	51.30%
Matrix_32	AHL25	Not Available	51.29%
Matrix_152	EIL1; AT5G65100	Not Available	51.28%
Matrix_391	AHL20	Not Available	51.20%
Matrix_376	WRKY45	Not Available	51.18%
Motif_36	OCETYPEIINTHISTONE	Type II element; Oct-containing composite element Type II found in tobacco histone gene promoter; Oct (octomer) motif is paired with TCA motif to form Type II element; Required for S-phase specific and meristematic tissue-specific expression	51.11%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	51.01%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	51.00%
Motif_107	O2F2BE2S1	opaque-2 recognition site F2 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F2 is a new O2-binding sequence related to the O2 target sites of the Coix alpha-coxin, the maize b-32 genes and the AP-1 pseudopalindrome	50.99%
Matrix_509	LEC2	Not Available	50.95%
Matrix_79	FUS3	Not Available	50.90%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	50.88%
Motif_138	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	50.87%
Matrix_167	ZAT6	Not Available	50.84%
Matrix_45	DRN	Not Available	50.84%
Matrix_41	anac058	Not Available	50.83%
Matrix_65	POC1; PIL1	Not Available	50.80%
Motif_127	SBOXATRBCS	S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5	50.79%
Matrix_86	CRF5; CRF6; CRF4	Not Available	50.77%
Matrix_234	RAP2.3	Not Available	50.77%
Matrix_78	AT3G45610	Not Available	50.74%
Matrix_197	NAP	Not Available	50.74%
Matrix_16	AT3G04450; PHL1	Not Available	50.73%
Matrix_505	GATA8	Not Available	50.73%
Motif_535	ACIPVPAL2	ACI element found at -83 to -74 of bean PAL2 promoter; AC-rich element; ACI element is required for vascular-specific gene expression; See also ACIIPVPAL2 and ACIIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissue-specific expression of pAL2 gene	50.59%
Motif_362	TGA2 octamer	palindromic octamer found enriched in chip-chip regions for TGA2	50.50%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	50.40%
Matrix_175	Dof5.7	Not Available	50.39%
Matrix_457	TGA2	Not Available	50.37%
Matrix_248	ZFP5	Not Available	50.31%
Matrix_6	AT1G70000	Not Available	50.20%
Motif_590	MYB3 binding site motif	Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses	50.17%
Matrix_495	HD-GL2-1; ANL2	Not Available	50.15%
Matrix_380	ATMYR1	Not Available	50.12%
Motif_518	SPHCOREZMC1	Core of Sph element; Core motif of Sph element in maize C1 gene to which maize VP1 (viviparous 1) protein binds; VP1-responsive element; see RYREPEAT4; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response	50.12%
Matrix_100	AT1G48610	Not Available	50.10%
Matrix_54	AHL20	Not Available	50.09%
Motif_412	SORLREP5AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.07%
Matrix_125	AHL12	Not Available	50.06%
Matrix_481	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	50.05%
Matrix_102	WRKY21	Not Available	50.00%