PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_118
Name: PIF3_2
Description: Direct targeting of light signals to a promoter element-bound transcription factor

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_345	POC1	Not Available	100.00%
Matrix_194	HYH; HY5	Not Available	76.44%
Matrix_338	AP2	Not Available	76.02%
Matrix_15	PIF3_1	Direct targeting of light signals to a promoter element-bound transcription factor	75.09%
Matrix_24	POC1	Not Available	75.09%
Motif_504	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	71.68%
Motif_635	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	71.68%
Matrix_403	BZR1	Not Available	71.07%
Matrix_443	AGL15	Not Available	69.93%
Matrix_191	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	68.39%
Matrix_359	FLC	Not Available	68.21%
Matrix_214	AP1	Not Available	67.15%
Motif_686	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	65.80%
Motif_159	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	65.80%
Motif_527	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	64.78%
Motif_289	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	64.78%
Matrix_55	PIF3	Not Available	64.70%
Matrix_77	PRR5	Not Available	64.63%
Matrix_19	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	64.57%
Matrix_305	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	64.24%
Matrix_264	ATAREB1	Not Available	63.77%
Matrix_369	AT2G18300	Not Available	63.55%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	62.91%
Matrix_514	DYT1	Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development	62.59%
Matrix_153	AP2	Not Available	61.96%
Matrix_49	FHY3/FAR1	Not Available	61.93%
Matrix_104	PI	Not Available	61.40%
Matrix_251	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	61.38%
Matrix_356	PRR5	Not Available	60.43%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	60.24%
Matrix_438	AtbZIP63	Not Available	60.16%
Matrix_217	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	59.31%
Matrix_467	RAV1	Not Available	59.27%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	59.27%
Matrix_477	RAV1	Not Available	59.27%
Matrix_192	FHY3/FAR1	Not Available	58.59%
Matrix_386	AGL1	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	57.68%
Matrix_121	SHP1	Not Available	57.68%
Matrix_466	PRR5	Not Available	57.67%
Matrix_107	AtSPL3	Not Available	56.69%
Matrix_304	AtSPL3	Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains	56.63%
Matrix_247	PIF3	Not Available	55.84%
Matrix_480	BES1	Not Available	55.58%
Matrix_445	AG	Not Available	55.20%
Matrix_98	AG	Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS	55.20%
Matrix_43	AG	Not Available	55.20%
Matrix_342	SPL14	Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon Resonance	54.65%
Matrix_123	FUSCA3	Not Available	54.39%
Matrix_156	POC1	Not Available	54.33%
Matrix_222	AGL2	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	54.25%
Matrix_28	SEP1	Not Available	54.25%
Matrix_310	AGL3	The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein	54.18%
Matrix_2	SEP4	Not Available	54.18%
Matrix_417	SEP4	Not Available	54.18%
Matrix_122	ABF1; AREB2	Not Available	54.12%
Matrix_352	LEC2	Not Available	53.99%
Motif_314	HY5AT	G box; Binding site of Arabidopsis bZIP protein HY5; HY5 is constitutively nuclear localized and is involved in light regulation of transcriptional activity of the promoters containing the G-box;HY5 abundance peaks in early seedling development, consistent with its role in promoting photomorphogenesis; HY5 stability and activity is regulated by phosphorylation in its COP1 binding domain; HY5 regulates stimulus-induced development of root and hypocotyl	53.98%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	53.98%
Motif_180	AGL2 binding site motif	Binding consensus sequence of Arabidopsis AGL2 (AGAMOUS-like 2); AGL2 contains MADS domain; AGL2 binds DNA as a dimer	53.52%
Matrix_449	BIM2	Not Available	53.37%
Matrix_428	SEP4	Not Available	53.35%
Matrix_105	SPL14	Not Available	53.31%
Matrix_186	FHY3	Not Available	53.20%
Matrix_488	ABF1	Not Available	53.15%
Matrix_323	BIM3	Not Available	53.03%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	52.86%
Matrix_278	AtbZIP44	Not Available	52.60%
Motif_252	GBOXPC	G box; Binding site of parsley cytosolic G-box binding factors (cytosolic GBFs); Cytosolic G-Box binding activity is modulated by light; DNA binding activity of cytosolic GBFs is regulated by cytosolic phosphorylation/dephospholylation activities; Cytosolic GBFs are translocated to the nucleus in a light-regulated manner	52.21%
Motif_154	ABREBNNAPA	ABRE of napA storage-protein gene of Brassica napus; ABA responsive element; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE; B3 domain of ABI3 interacts with the RY/G complex	51.91%
Motif_300	ACGTROOT1; HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA	51.89%
Motif_388	CPRFPCCHS; AtbZIP1	BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	51.80%
Motif_400	ABREAZMRAB28	ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	51.70%
Motif_120	ABRETAEM	ABRE (ABA responsive element) found in wheat Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGC	51.63%
Matrix_113	ABI5	Not Available	51.53%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	51.52%
Matrix_375	AtSPL8	Not Available	51.34%
Motif_599	LREBOXIIPCCHS1; HY5	BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	51.34%
Matrix_133	DYT1	Not Available	51.19%
Matrix_330	MYC2; TT8	Not Available	51.16%
Motif_571	GBOXSORBCS1	G-box found in the spinach RBCS-1 gene promoter; Located between -219 and -212; G-box trimer confers relatively high level expression in roots	51.08%
Matrix_499	ARR18	Not Available	50.90%
Matrix_301	PIL5	Not Available	50.73%
Matrix_465	MYC4	Not Available	50.72%
Matrix_120	BEE2	Not Available	50.64%
Matrix_331	GBF1	Not Available	50.58%
Motif_92	ABREATRD22	ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22	50.54%
Matrix_33	SPL11; SPL10; SPL2	Not Available	50.38%
Motif_480	ABRE2HVA1	ABA responsive element, ABRE2, found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response	50.37%
Matrix_298	RAV1	Not Available	50.31%
Matrix_413	RAV1	Not Available	50.31%