Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D002393', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '292', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p30900' => 'bna', 'A03p02440' => 'bna', 'A03p43620' => 'bna', 'A07p07960' => 'bna', 'Aa31LG11G6770' => 'aar', 'Aa31LG8G11090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1111' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.362' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3299' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2876' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.171' => 'aag', 'Actinidia00937' => 'ach', 'Actinidia13423' => 'ach', 'Actinidia13923' => 'ach', 'Actinidia14641' => 'ach', 'Ah.14g081380' => 'amhyb', 'Ah.16g103310' => 'amhyb', 'AL3G39820' => 'aly', 'AL4G17820' => 'aly', 'AL6G15650' => 'aly', 'Aqoxy4G02625' => 'aox', 'Aqoxy7G01831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.JV7TC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV3ZRB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP9K23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ853S' => 'arhy', 'AT3G24350' => 'ath', 'AT5G05760' => 'ath', 'ATR0121G009' => 'atr', 'ATR0618G234' => 'atr', 'Atru.chr12.6_Atru.chr12.7' => 'acertr', 'Atru.chr7.1293' => 'acertr', 'Atru.chr7.2320' => 'acertr', 'AUR62011032' => 'cqu', 'AUR62012228' => 'cqu', 'AUR62022860' => 'cqu', 'AUR62033405' => 'cqu', 'AUR62039509' => 'cqu', 'BcaB01g05751' => 'bca', 'BcaB01g05963' => 'bca', 'BcaB03g14588' => 'bca', 'BcaB04g20390' => 'bca', 'BcaB06g26621' => 'bca', 'BcaC01g03317' => 'bca', 'BcaC06g35690' => 'bca', 'BcaC08g42817' => 'bca', 'BcaNung07047' => 'bca', 'BolC1t03880H' => 'bol', 'BolC3t12831H' => 'bol', 'BolC3t17633H' => 'bol', 'BolC7t41669H' => 'bol', 'BraA01t03219Z' => 'bra', 'BraA03t09605Z' => 'bra', 'BraA03t13499Z' => 'bra', 'BraA07t28583Z' => 'bra', 'C01p39300' => 'bna', 'C03p02770' => 'bna', 'C03p53730' => 'bna', 'C06p00290' => 'bna', 'C07p12010' => 'bna', 'CAN.G21.21' => 'can', 'CAN.G248.27' => 'can', 'CANSAT25G3278' => 'cansat', 'CANSAT54G1873' => 'cansat', 'CANSAT56G0808' => 'cansat', 'CARHR100450' => 'chi', 'CARHR207510' => 'chi', 'Carub.0003s2469' => 'cru', 'Carub.0006s0466' => 'cru', 'Ca_15693_v3' => 'car', 'Ca_15694_v3' => 'car', 'CBR_g58816' => 'cbr', 'Cc06_g09300' => 'ccan', 'Cc06_g09310' => 'ccan', 'CDE06G2071' => 'cde', 'CDE07G1083' => 'cde', 'Cfa024165' => 'cfa', 'Ciclev10008805m.g' => 'ccl', 'Ciclev10008850m.g' => 'ccl', 'Ciclev10031758m.g' => 'ccl', 'CiPaw.01G297000' => 'cil', 'CiPaw.07G217300' => 'cil', 'CiPaw.08G016000' => 'cil', 'ClCG07G004070' => 'cla', 'ClCG08G012870' => 'cla', 'COL.COLO4_25632' => 'col', 'Cpa.g.sc19.208' => 'cpa', 'Cpa.g.sc23.145' => 'cpa', 'Cre16.g692050' => 'cre', 'CsaV3_5G008990' => 'csa', 'CSS0005321' => 'camsi', 'CSS0014891' => 'camsi', 'CSS0015478' => 'camsi', 'CSS0023863' => 'camsi', 'CSS0039849' => 'camsi', 'Dinv13744' => 'din', 'Dinv20972' => 'din', 'Dinv21033' => 'din', 'Dinv34410' => 'din', 'Dinv35878' => 'din', 'Dinv36602' => 'din', 'Dinv41574' => 'din', 'Duzib114G1007' => 'dzi', 'Duzib150G0091' => 'dzi', 'Duzib168G0800' => 'dzi', 'Duzib168G0991' => 'dzi', 'Duzib187G1129' => 'dzi', 'EL10Ac1g02021' => 'bvu', 'EL10Ac2g04806' => 'bvu', 'EL10Ac8g18546' => 'bvu', 'Eucgr.C02861' => 'egr', 'Eucgr.C02862' => 'egr', 'Eucgr.C02867' => 'egr', 'Eucgr.G03043' => 'egr', 'FAN01G0378' => 'fan', 'FAN03G0360' => 'fan', 'FAN06G1269' => 'fan', 'FAN10G0698' => 'fan', 'FAN15G0251' => 'fan', 'FAN20G1565' => 'fan', 'FAN24G3124' => 'fan', 'FAN27G0742' => 'fan', 'FvH4_2g30200' => 'fve', 'FvH4_7g24180' => 'fve', 'Glyma.02G255700' => 'gma', 'Glyma.04G072700' => 'gma', 'Glyma.04G072800' => 'gma', 'Glyma.06G073900' => 'gma', 'Glyma.06G074000' => 'gma', 'Glyma.U031123' => 'gma', 'Gohir.A05G011000' => 'ghi', 'Gohir.A06G048200' => 'ghi', 'Gohir.A10G233800' => 'ghi', 'Gohir.A13G203800' => 'ghi', 'Gohir.D05G011700' => 'ghi', 'Gohir.D06G048200' => 'ghi', 'Gohir.D10G246100' => 'ghi', 'Gohir.D13G209100' => 'ghi', 'Gorai.009G012000' => 'gra', 'Gorai.010G054000' => 'gra', 'Gorai.011G283800' => 'gra', 'Gorai.013G238200' => 'gra', 'GSVIVG01015436001' => 'vvi', 'GSVIVG01032856001' => 'vvi', 'GSVIVG01035729001' => 'vvi', 'HanXRQChr03g0062001' => 'han', 'HanXRQChr09g0240451' => 'han', 'HanXRQChr10g0317401' => 'han', 'HanXRQChr12g0370551' => 'han', 'Haze_17198' => 'cav', 'Haze_21627' => 'cav', 'Haze_27118' => 'cav', 'Hma1.2p1_0018F.1_g013150' => 'hma', 'Hma1.2p1_0175F.1_g077320' => 'hma', 'HPP92_018348' => 'vpl', 'HPP92_018349' => 'vpl', 'HPP92_018382' => 'vpl', 'Hund09179' => 'sun', 'Hund13839' => 'sun', 'Hund26116' => 'sun', 'Lalb_Chr08g0243771' => 'lal', 'Lalb_Chr11g0064001' => 'lal', 'Lalb_Chr17g0346691' => 'lal', 'Lj1g0015322' => 'lja', 'Lj1g0018321' => 'lja', 'Lj7C641G12' => 'lonja', 'Lj8A70T41' => 'lonja', 'LjContig00357g0020435' => 'lja', 'Lsat_1_v5_gn_5_99821' => 'lsa', 'Lsat_1_v5_gn_7_43121' => 'lsa', 'Lsat_1_v5_gn_8_12440' => 'lsa', 'Lsat_1_v5_gn_8_94641' => 'lsa', 'Manes.07G127200' => 'mes', 'Manes.16G064900' => 'mes', 'Mapoly0036s0047' => 'mpo', 'MBI01_g10037_MAGBIO' => 'mbi', 'MBI04_g20760_MAGBIO' => 'mbi', 'MBI14_g09424_MAGBIO' => 'mbi', 'MBI18_g28884_MAGBIO' => 'mbi', 'MBI18_g36458_MAGBIO' => 'mbi', 'MCO02G165' => 'mco', 'MD01G1149000' => 'mdo', 'MD08G1135700' => 'mdo', 'MD15G1114700' => 'mdo', 'MD15G1114800' => 'mdo', 'MD15G1190200' => 'mdo', 'Medtr3g108160' => 'mtr', 'Medtr5g093600' => 'mtr', 'MELO3C011211.2' => 'cme', 'MELO3C025172.2' => 'cme', 'Migut.A00270' => 'egut', 'Migut.E01503' => 'egut', 'Migut.F01414' => 'egut', 'MSTRG.14003' => 'ama', 'MSTRG.25877' => 'ama', 'MSTRG.8319' => 'ama', 'Nitab4.5_0000125g0090' => 'nta', 'Nitab4.5_0000802g0170' => 'nta', 'Nitab4.5_0001346g0010' => 'nta', 'Nitab4.5_0011857g0010' => 'nta', 'Nn2g11427' => 'nnu', 'Nn2g11829' => 'nnu', 'Nn8g39268' => 'nnu', 'Oeu027166.1' => 'oeu', 'Oeu045174.1' => 'oeu', 'Os01g0179200' => 'osa', 'Peaxi162Scf00105g01218' => 'pax', 'Peaxi162Scf01313g00119' => 'pax', 'PGR044G1448' => 'pgr', 'PGSC0003DMG400004557' => 'stu', 'PGSC0003DMG400014503' => 'stu', 'PGSC0003DMG400018386' => 'stu', 'Phvul.008G225400' => 'pvu', 'Phvul.009G098500' => 'pvu', 'Phvul.009G098600' => 'pvu', 'Potri.006G157000' => 'ptr', 'Potri.010G191100' => 'ptr', 'Potri.018G072400' => 'ptr', 'Pp3c13_17240' => 'ppa', 'Pp3c3_23960' => 'ppa', 'Prupe.1G466200' => 'ppe', 'Prupe.2G247700' => 'ppe', 'Prupe.7G226900' => 'ppe', 'Psat2g012720' => 'psa', 'Psat5g026920' => 'psa', 'PSO063G6573' => 'pso', 'PSO339G0485' => 'pso', 'PSO782G3325' => 'pso', 'PSO801G0669' => 'pso', 'QL12p031209' => 'qlo', 'RcHm_v2.0_Chr1g0369761' => 'rch', 'RcHm_v2.0_Chr6g0312681' => 'rch', 'Rhsim01G0091400' => 'rsi', 'Rhsim09G0173400' => 'rsi', 'Sabra06G0123200' => 'sbr', 'Sabra10G0147100' => 'sbr', 'Sabra18G0064200' => 'sbr', 'SalBow4G1136' => 'sbo', 'SalBow6G5206' => 'sbo', 'SalBow8G4140' => 'sbo', 'Sc11g0007210' => 'sci', 'Sc18g0001010' => 'sci', 'Sed0005671' => 'sed', 'Sed0013961' => 'sed', 'Sed0020602' => 'sed', 'Sed0023487' => 'sed', 'SEGI_03224' => 'sgi', 'SEGI_04853' => 'sgi', 'SEGI_13325' => 'sgi', 'SEGI_15123' => 'sgi', 'SEGI_22729' => 'sgi', 'SEGI_22935' => 'sgi', 'SGA_v2.0_scaffold163G38094' => 'sas', 'SGA_v2.0_scaffold169G38634' => 'sas', 'SMO203G0172' => 'smo', 'SMO357G0001' => 'smo', 'Solyc07g054140.3' => 'sly', 'Solyc08g067910.3' => 'sly', 'Sopen07g028060' => 'spe', 'Sopen08g021820' => 'spe', 'Sp3g22160' => 'spa', 'Sp6g37140' => 'spa', 'TAR624G0306' => 'tar', 'TAR626G1176' => 'tar', 'TAR633G1402' => 'tar', 'TAR636G2212' => 'tar', 'THA.LOC104804580' => 'tha', 'THA.LOC104816556' => 'tha', 'Thecc.09G115100' => 'tca', 'Thecc.09G115200' => 'tca', 'Thecc.10G023000' => 'tca', 'Thhalv10002594m.g' => 'esa', 'Thhalv10014023m.g' => 'esa', 'TPR.G12393' => 'tpr', 'TPR.G12410' => 'tpr', 'TPR.G30900' => 'tpr', 'TPR.G33100' => 'tpr', 'TWI09G0841' => 'twi', 'TWI63G0194' => 'twi', 'TWI63G1405' => 'twi', 'unitig_46.g18218' => 'ugi', 'unitig_748.g7499' => 'ugi', 'vmacro05449' => 'vma', 'vmacro10059' => 'vma', 'vmacro20672' => 'vma', 'VMungo0647G0800' => 'vmu', 'VMungo1309G1339' => 'vmu', 'VMungo1309G3096' => 'vmu', 'Zm00001eb122290' => 'zma', 'Zm00001eb337020' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D002393', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D002393' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D002393', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '292', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D002393' ) ), 'genes' => array( 'A01p30900' => 'bna', 'A03p02440' => 'bna', 'A03p43620' => 'bna', 'A07p07960' => 'bna', 'Aa31LG11G6770' => 'aar', 'Aa31LG8G11090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1111' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.362' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3299' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2876' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.171' => 'aag', 'Actinidia00937' => 'ach', 'Actinidia13423' => 'ach', 'Actinidia13923' => 'ach', 'Actinidia14641' => 'ach', 'Ah.14g081380' => 'amhyb', 'Ah.16g103310' => 'amhyb', 'AL3G39820' => 'aly', 'AL4G17820' => 'aly', 'AL6G15650' => 'aly', 'Aqoxy4G02625' => 'aox', 'Aqoxy7G01831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.JV7TC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV3ZRB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP9K23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ853S' => 'arhy', 'AT3G24350' => 'ath', 'AT5G05760' => 'ath', 'ATR0121G009' => 'atr', 'ATR0618G234' => 'atr', 'Atru.chr12.6_Atru.chr12.7' => 'acertr', 'Atru.chr7.1293' => 'acertr', 'Atru.chr7.2320' => 'acertr', 'AUR62011032' => 'cqu', 'AUR62012228' => 'cqu', 'AUR62022860' => 'cqu', 'AUR62033405' => 'cqu', 'AUR62039509' => 'cqu', 'BcaB01g05751' => 'bca', 'BcaB01g05963' => 'bca', 'BcaB03g14588' => 'bca', 'BcaB04g20390' => 'bca', 'BcaB06g26621' => 'bca', 'BcaC01g03317' => 'bca', 'BcaC06g35690' => 'bca', 'BcaC08g42817' => 'bca', 'BcaNung07047' => 'bca', 'BolC1t03880H' => 'bol', 'BolC3t12831H' => 'bol', 'BolC3t17633H' => 'bol', 'BolC7t41669H' => 'bol', 'BraA01t03219Z' => 'bra', 'BraA03t09605Z' => 'bra', 'BraA03t13499Z' => 'bra', 'BraA07t28583Z' => 'bra', 'C01p39300' => 'bna', 'C03p02770' => 'bna', 'C03p53730' => 'bna', 'C06p00290' => 'bna', 'C07p12010' => 'bna', 'CAN.G21.21' => 'can', 'CAN.G248.27' => 'can', 'CANSAT25G3278' => 'cansat', 'CANSAT54G1873' => 'cansat', 'CANSAT56G0808' => 'cansat', 'CARHR100450' => 'chi', 'CARHR207510' => 'chi', 'Carub.0003s2469' => 'cru', 'Carub.0006s0466' => 'cru', 'Ca_15693_v3' => 'car', 'Ca_15694_v3' => 'car', 'CBR_g58816' => 'cbr', 'Cc06_g09300' => 'ccan', 'Cc06_g09310' => 'ccan', 'CDE06G2071' => 'cde', 'CDE07G1083' => 'cde', 'Cfa024165' => 'cfa', 'Ciclev10008805m.g' => 'ccl', 'Ciclev10008850m.g' => 'ccl', 'Ciclev10031758m.g' => 'ccl', 'CiPaw.01G297000' => 'cil', 'CiPaw.07G217300' => 'cil', 'CiPaw.08G016000' => 'cil', 'ClCG07G004070' => 'cla', 'ClCG08G012870' => 'cla', 'COL.COLO4_25632' => 'col', 'Cpa.g.sc19.208' => 'cpa', 'Cpa.g.sc23.145' => 'cpa', 'Cre16.g692050' => 'cre', 'CsaV3_5G008990' => 'csa', 'CSS0005321' => 'camsi', 'CSS0014891' => 'camsi', 'CSS0015478' => 'camsi', 'CSS0023863' => 'camsi', 'CSS0039849' => 'camsi', 'Dinv13744' => 'din', 'Dinv20972' => 'din', 'Dinv21033' => 'din', 'Dinv34410' => 'din', 'Dinv35878' => 'din', 'Dinv36602' => 'din', 'Dinv41574' => 'din', 'Duzib114G1007' => 'dzi', 'Duzib150G0091' => 'dzi', 'Duzib168G0800' => 'dzi', 'Duzib168G0991' => 'dzi', 'Duzib187G1129' => 'dzi', 'EL10Ac1g02021' => 'bvu', 'EL10Ac2g04806' => 'bvu', 'EL10Ac8g18546' => 'bvu', 'Eucgr.C02861' => 'egr', 'Eucgr.C02862' => 'egr', 'Eucgr.C02867' => 'egr', 'Eucgr.G03043' => 'egr', 'FAN01G0378' => 'fan', 'FAN03G0360' => 'fan', 'FAN06G1269' => 'fan', 'FAN10G0698' => 'fan', 'FAN15G0251' => 'fan', 'FAN20G1565' => 'fan', 'FAN24G3124' => 'fan', 'FAN27G0742' => 'fan', 'FvH4_2g30200' => 'fve', 'FvH4_7g24180' => 'fve', 'Glyma.02G255700' => 'gma', 'Glyma.04G072700' => 'gma', 'Glyma.04G072800' => 'gma', 'Glyma.06G073900' => 'gma', 'Glyma.06G074000' => 'gma', 'Glyma.U031123' => 'gma', 'Gohir.A05G011000' => 'ghi', 'Gohir.A06G048200' => 'ghi', 'Gohir.A10G233800' => 'ghi', 'Gohir.A13G203800' => 'ghi', 'Gohir.D05G011700' => 'ghi', 'Gohir.D06G048200' => 'ghi', 'Gohir.D10G246100' => 'ghi', 'Gohir.D13G209100' => 'ghi', 'Gorai.009G012000' => 'gra', 'Gorai.010G054000' => 'gra', 'Gorai.011G283800' => 'gra', 'Gorai.013G238200' => 'gra', 'GSVIVG01015436001' => 'vvi', 'GSVIVG01032856001' => 'vvi', 'GSVIVG01035729001' => 'vvi', 'HanXRQChr03g0062001' => 'han', 'HanXRQChr09g0240451' => 'han', 'HanXRQChr10g0317401' => 'han', 'HanXRQChr12g0370551' => 'han', 'Haze_17198' => 'cav', 'Haze_21627' => 'cav', 'Haze_27118' => 'cav', 'Hma1.2p1_0018F.1_g013150' => 'hma', 'Hma1.2p1_0175F.1_g077320' => 'hma', 'HPP92_018348' => 'vpl', 'HPP92_018349' => 'vpl', 'HPP92_018382' => 'vpl', 'Hund09179' => 'sun', 'Hund13839' => 'sun', 'Hund26116' => 'sun', 'Lalb_Chr08g0243771' => 'lal', 'Lalb_Chr11g0064001' => 'lal', 'Lalb_Chr17g0346691' => 'lal', 'Lj1g0015322' => 'lja', 'Lj1g0018321' => 'lja', 'Lj7C641G12' => 'lonja', 'Lj8A70T41' => 'lonja', 'LjContig00357g0020435' => 'lja', 'Lsat_1_v5_gn_5_99821' => 'lsa', 'Lsat_1_v5_gn_7_43121' => 'lsa', 'Lsat_1_v5_gn_8_12440' => 'lsa', 'Lsat_1_v5_gn_8_94641' => 'lsa', 'Manes.07G127200' => 'mes', 'Manes.16G064900' => 'mes', 'Mapoly0036s0047' => 'mpo', 'MBI01_g10037_MAGBIO' => 'mbi', 'MBI04_g20760_MAGBIO' => 'mbi', 'MBI14_g09424_MAGBIO' => 'mbi', 'MBI18_g28884_MAGBIO' => 'mbi', 'MBI18_g36458_MAGBIO' => 'mbi', 'MCO02G165' => 'mco', 'MD01G1149000' => 'mdo', 'MD08G1135700' => 'mdo', 'MD15G1114700' => 'mdo', 'MD15G1114800' => 'mdo', 'MD15G1190200' => 'mdo', 'Medtr3g108160' => 'mtr', 'Medtr5g093600' => 'mtr', 'MELO3C011211.2' => 'cme', 'MELO3C025172.2' => 'cme', 'Migut.A00270' => 'egut', 'Migut.E01503' => 'egut', 'Migut.F01414' => 'egut', 'MSTRG.14003' => 'ama', 'MSTRG.25877' => 'ama', 'MSTRG.8319' => 'ama', 'Nitab4.5_0000125g0090' => 'nta', 'Nitab4.5_0000802g0170' => 'nta', 'Nitab4.5_0001346g0010' => 'nta', 'Nitab4.5_0011857g0010' => 'nta', 'Nn2g11427' => 'nnu', 'Nn2g11829' => 'nnu', 'Nn8g39268' => 'nnu', 'Oeu027166.1' => 'oeu', 'Oeu045174.1' => 'oeu', 'Os01g0179200' => 'osa', 'Peaxi162Scf00105g01218' => 'pax', 'Peaxi162Scf01313g00119' => 'pax', 'PGR044G1448' => 'pgr', 'PGSC0003DMG400004557' => 'stu', 'PGSC0003DMG400014503' => 'stu', 'PGSC0003DMG400018386' => 'stu', 'Phvul.008G225400' => 'pvu', 'Phvul.009G098500' => 'pvu', 'Phvul.009G098600' => 'pvu', 'Potri.006G157000' => 'ptr', 'Potri.010G191100' => 'ptr', 'Potri.018G072400' => 'ptr', 'Pp3c13_17240' => 'ppa', 'Pp3c3_23960' => 'ppa', 'Prupe.1G466200' => 'ppe', 'Prupe.2G247700' => 'ppe', 'Prupe.7G226900' => 'ppe', 'Psat2g012720' => 'psa', 'Psat5g026920' => 'psa', 'PSO063G6573' => 'pso', 'PSO339G0485' => 'pso', 'PSO782G3325' => 'pso', 'PSO801G0669' => 'pso', 'QL12p031209' => 'qlo', 'RcHm_v2.0_Chr1g0369761' => 'rch', 'RcHm_v2.0_Chr6g0312681' => 'rch', 'Rhsim01G0091400' => 'rsi', 'Rhsim09G0173400' => 'rsi', 'Sabra06G0123200' => 'sbr', 'Sabra10G0147100' => 'sbr', 'Sabra18G0064200' => 'sbr', 'SalBow4G1136' => 'sbo', 'SalBow6G5206' => 'sbo', 'SalBow8G4140' => 'sbo', 'Sc11g0007210' => 'sci', 'Sc18g0001010' => 'sci', 'Sed0005671' => 'sed', 'Sed0013961' => 'sed', 'Sed0020602' => 'sed', 'Sed0023487' => 'sed', 'SEGI_03224' => 'sgi', 'SEGI_04853' => 'sgi', 'SEGI_13325' => 'sgi', 'SEGI_15123' => 'sgi', 'SEGI_22729' => 'sgi', 'SEGI_22935' => 'sgi', 'SGA_v2.0_scaffold163G38094' => 'sas', 'SGA_v2.0_scaffold169G38634' => 'sas', 'SMO203G0172' => 'smo', 'SMO357G0001' => 'smo', 'Solyc07g054140.3' => 'sly', 'Solyc08g067910.3' => 'sly', 'Sopen07g028060' => 'spe', 'Sopen08g021820' => 'spe', 'Sp3g22160' => 'spa', 'Sp6g37140' => 'spa', 'TAR624G0306' => 'tar', 'TAR626G1176' => 'tar', 'TAR633G1402' => 'tar', 'TAR636G2212' => 'tar', 'THA.LOC104804580' => 'tha', 'THA.LOC104816556' => 'tha', 'Thecc.09G115100' => 'tca', 'Thecc.09G115200' => 'tca', 'Thecc.10G023000' => 'tca', 'Thhalv10002594m.g' => 'esa', 'Thhalv10014023m.g' => 'esa', 'TPR.G12393' => 'tpr', 'TPR.G12410' => 'tpr', 'TPR.G30900' => 'tpr', 'TPR.G33100' => 'tpr', 'TWI09G0841' => 'twi', 'TWI63G0194' => 'twi', 'TWI63G1405' => 'twi', 'unitig_46.g18218' => 'ugi', 'unitig_748.g7499' => 'ugi', 'vmacro05449' => 'vma', 'vmacro10059' => 'vma', 'vmacro20672' => 'vma', 'VMungo0647G0800' => 'vmu', 'VMungo1309G1339' => 'vmu', 'VMungo1309G3096' => 'vmu', 'Zm00001eb122290' => 'zma', 'Zm00001eb337020' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D002393' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D002393' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D002393' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D002393' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D002393', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '292', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p30900' => 'bna', 'A03p02440' => 'bna', 'A03p43620' => 'bna', 'A07p07960' => 'bna', 'Aa31LG11G6770' => 'aar', 'Aa31LG8G11090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1111' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.362' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3299' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2876' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.171' => 'aag', 'Actinidia00937' => 'ach', 'Actinidia13423' => 'ach', 'Actinidia13923' => 'ach', 'Actinidia14641' => 'ach', 'Ah.14g081380' => 'amhyb', 'Ah.16g103310' => 'amhyb', 'AL3G39820' => 'aly', 'AL4G17820' => 'aly', 'AL6G15650' => 'aly', 'Aqoxy4G02625' => 'aox', 'Aqoxy7G01831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.JV7TC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV3ZRB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP9K23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ853S' => 'arhy', 'AT3G24350' => 'ath', 'AT5G05760' => 'ath', 'ATR0121G009' => 'atr', 'ATR0618G234' => 'atr', 'Atru.chr12.6_Atru.chr12.7' => 'acertr', 'Atru.chr7.1293' => 'acertr', 'Atru.chr7.2320' => 'acertr', 'AUR62011032' => 'cqu', 'AUR62012228' => 'cqu', 'AUR62022860' => 'cqu', 'AUR62033405' => 'cqu', 'AUR62039509' => 'cqu', 'BcaB01g05751' => 'bca', 'BcaB01g05963' => 'bca', 'BcaB03g14588' => 'bca', 'BcaB04g20390' => 'bca', 'BcaB06g26621' => 'bca', 'BcaC01g03317' => 'bca', 'BcaC06g35690' => 'bca', 'BcaC08g42817' => 'bca', 'BcaNung07047' => 'bca', 'BolC1t03880H' => 'bol', 'BolC3t12831H' => 'bol', 'BolC3t17633H' => 'bol', 'BolC7t41669H' => 'bol', 'BraA01t03219Z' => 'bra', 'BraA03t09605Z' => 'bra', 'BraA03t13499Z' => 'bra', 'BraA07t28583Z' => 'bra', 'C01p39300' => 'bna', 'C03p02770' => 'bna', 'C03p53730' => 'bna', 'C06p00290' => 'bna', 'C07p12010' => 'bna', 'CAN.G21.21' => 'can', 'CAN.G248.27' => 'can', 'CANSAT25G3278' => 'cansat', 'CANSAT54G1873' => 'cansat', 'CANSAT56G0808' => 'cansat', 'CARHR100450' => 'chi', 'CARHR207510' => 'chi', 'Carub.0003s2469' => 'cru', 'Carub.0006s0466' => 'cru', 'Ca_15693_v3' => 'car', 'Ca_15694_v3' => 'car', 'CBR_g58816' => 'cbr', 'Cc06_g09300' => 'ccan', 'Cc06_g09310' => 'ccan', 'CDE06G2071' => 'cde', 'CDE07G1083' => 'cde', 'Cfa024165' => 'cfa', 'Ciclev10008805m.g' => 'ccl', 'Ciclev10008850m.g' => 'ccl', 'Ciclev10031758m.g' => 'ccl', 'CiPaw.01G297000' => 'cil', 'CiPaw.07G217300' => 'cil', 'CiPaw.08G016000' => 'cil', 'ClCG07G004070' => 'cla', 'ClCG08G012870' => 'cla', 'COL.COLO4_25632' => 'col', 'Cpa.g.sc19.208' => 'cpa', 'Cpa.g.sc23.145' => 'cpa', 'Cre16.g692050' => 'cre', 'CsaV3_5G008990' => 'csa', 'CSS0005321' => 'camsi', 'CSS0014891' => 'camsi', 'CSS0015478' => 'camsi', 'CSS0023863' => 'camsi', 'CSS0039849' => 'camsi', 'Dinv13744' => 'din', 'Dinv20972' => 'din', 'Dinv21033' => 'din', 'Dinv34410' => 'din', 'Dinv35878' => 'din', 'Dinv36602' => 'din', 'Dinv41574' => 'din', 'Duzib114G1007' => 'dzi', 'Duzib150G0091' => 'dzi', 'Duzib168G0800' => 'dzi', 'Duzib168G0991' => 'dzi', 'Duzib187G1129' => 'dzi', 'EL10Ac1g02021' => 'bvu', 'EL10Ac2g04806' => 'bvu', 'EL10Ac8g18546' => 'bvu', 'Eucgr.C02861' => 'egr', 'Eucgr.C02862' => 'egr', 'Eucgr.C02867' => 'egr', 'Eucgr.G03043' => 'egr', 'FAN01G0378' => 'fan', 'FAN03G0360' => 'fan', 'FAN06G1269' => 'fan', 'FAN10G0698' => 'fan', 'FAN15G0251' => 'fan', 'FAN20G1565' => 'fan', 'FAN24G3124' => 'fan', 'FAN27G0742' => 'fan', 'FvH4_2g30200' => 'fve', 'FvH4_7g24180' => 'fve', 'Glyma.02G255700' => 'gma', 'Glyma.04G072700' => 'gma', 'Glyma.04G072800' => 'gma', 'Glyma.06G073900' => 'gma', 'Glyma.06G074000' => 'gma', 'Glyma.U031123' => 'gma', 'Gohir.A05G011000' => 'ghi', 'Gohir.A06G048200' => 'ghi', 'Gohir.A10G233800' => 'ghi', 'Gohir.A13G203800' => 'ghi', 'Gohir.D05G011700' => 'ghi', 'Gohir.D06G048200' => 'ghi', 'Gohir.D10G246100' => 'ghi', 'Gohir.D13G209100' => 'ghi', 'Gorai.009G012000' => 'gra', 'Gorai.010G054000' => 'gra', 'Gorai.011G283800' => 'gra', 'Gorai.013G238200' => 'gra', 'GSVIVG01015436001' => 'vvi', 'GSVIVG01032856001' => 'vvi', 'GSVIVG01035729001' => 'vvi', 'HanXRQChr03g0062001' => 'han', 'HanXRQChr09g0240451' => 'han', 'HanXRQChr10g0317401' => 'han', 'HanXRQChr12g0370551' => 'han', 'Haze_17198' => 'cav', 'Haze_21627' => 'cav', 'Haze_27118' => 'cav', 'Hma1.2p1_0018F.1_g013150' => 'hma', 'Hma1.2p1_0175F.1_g077320' => 'hma', 'HPP92_018348' => 'vpl', 'HPP92_018349' => 'vpl', 'HPP92_018382' => 'vpl', 'Hund09179' => 'sun', 'Hund13839' => 'sun', 'Hund26116' => 'sun', 'Lalb_Chr08g0243771' => 'lal', 'Lalb_Chr11g0064001' => 'lal', 'Lalb_Chr17g0346691' => 'lal', 'Lj1g0015322' => 'lja', 'Lj1g0018321' => 'lja', 'Lj7C641G12' => 'lonja', 'Lj8A70T41' => 'lonja', 'LjContig00357g0020435' => 'lja', 'Lsat_1_v5_gn_5_99821' => 'lsa', 'Lsat_1_v5_gn_7_43121' => 'lsa', 'Lsat_1_v5_gn_8_12440' => 'lsa', 'Lsat_1_v5_gn_8_94641' => 'lsa', 'Manes.07G127200' => 'mes', 'Manes.16G064900' => 'mes', 'Mapoly0036s0047' => 'mpo', 'MBI01_g10037_MAGBIO' => 'mbi', 'MBI04_g20760_MAGBIO' => 'mbi', 'MBI14_g09424_MAGBIO' => 'mbi', 'MBI18_g28884_MAGBIO' => 'mbi', 'MBI18_g36458_MAGBIO' => 'mbi', 'MCO02G165' => 'mco', 'MD01G1149000' => 'mdo', 'MD08G1135700' => 'mdo', 'MD15G1114700' => 'mdo', 'MD15G1114800' => 'mdo', 'MD15G1190200' => 'mdo', 'Medtr3g108160' => 'mtr', 'Medtr5g093600' => 'mtr', 'MELO3C011211.2' => 'cme', 'MELO3C025172.2' => 'cme', 'Migut.A00270' => 'egut', 'Migut.E01503' => 'egut', 'Migut.F01414' => 'egut', 'MSTRG.14003' => 'ama', 'MSTRG.25877' => 'ama', 'MSTRG.8319' => 'ama', 'Nitab4.5_0000125g0090' => 'nta', 'Nitab4.5_0000802g0170' => 'nta', 'Nitab4.5_0001346g0010' => 'nta', 'Nitab4.5_0011857g0010' => 'nta', 'Nn2g11427' => 'nnu', 'Nn2g11829' => 'nnu', 'Nn8g39268' => 'nnu', 'Oeu027166.1' => 'oeu', 'Oeu045174.1' => 'oeu', 'Os01g0179200' => 'osa', 'Peaxi162Scf00105g01218' => 'pax', 'Peaxi162Scf01313g00119' => 'pax', 'PGR044G1448' => 'pgr', 'PGSC0003DMG400004557' => 'stu', 'PGSC0003DMG400014503' => 'stu', 'PGSC0003DMG400018386' => 'stu', 'Phvul.008G225400' => 'pvu', 'Phvul.009G098500' => 'pvu', 'Phvul.009G098600' => 'pvu', 'Potri.006G157000' => 'ptr', 'Potri.010G191100' => 'ptr', 'Potri.018G072400' => 'ptr', 'Pp3c13_17240' => 'ppa', 'Pp3c3_23960' => 'ppa', 'Prupe.1G466200' => 'ppe', 'Prupe.2G247700' => 'ppe', 'Prupe.7G226900' => 'ppe', 'Psat2g012720' => 'psa', 'Psat5g026920' => 'psa', 'PSO063G6573' => 'pso', 'PSO339G0485' => 'pso', 'PSO782G3325' => 'pso', 'PSO801G0669' => 'pso', 'QL12p031209' => 'qlo', 'RcHm_v2.0_Chr1g0369761' => 'rch', 'RcHm_v2.0_Chr6g0312681' => 'rch', 'Rhsim01G0091400' => 'rsi', 'Rhsim09G0173400' => 'rsi', 'Sabra06G0123200' => 'sbr', 'Sabra10G0147100' => 'sbr', 'Sabra18G0064200' => 'sbr', 'SalBow4G1136' => 'sbo', 'SalBow6G5206' => 'sbo', 'SalBow8G4140' => 'sbo', 'Sc11g0007210' => 'sci', 'Sc18g0001010' => 'sci', 'Sed0005671' => 'sed', 'Sed0013961' => 'sed', 'Sed0020602' => 'sed', 'Sed0023487' => 'sed', 'SEGI_03224' => 'sgi', 'SEGI_04853' => 'sgi', 'SEGI_13325' => 'sgi', 'SEGI_15123' => 'sgi', 'SEGI_22729' => 'sgi', 'SEGI_22935' => 'sgi', 'SGA_v2.0_scaffold163G38094' => 'sas', 'SGA_v2.0_scaffold169G38634' => 'sas', 'SMO203G0172' => 'smo', 'SMO357G0001' => 'smo', 'Solyc07g054140.3' => 'sly', 'Solyc08g067910.3' => 'sly', 'Sopen07g028060' => 'spe', 'Sopen08g021820' => 'spe', 'Sp3g22160' => 'spa', 'Sp6g37140' => 'spa', 'TAR624G0306' => 'tar', 'TAR626G1176' => 'tar', 'TAR633G1402' => 'tar', 'TAR636G2212' => 'tar', 'THA.LOC104804580' => 'tha', 'THA.LOC104816556' => 'tha', 'Thecc.09G115100' => 'tca', 'Thecc.09G115200' => 'tca', 'Thecc.10G023000' => 'tca', 'Thhalv10002594m.g' => 'esa', 'Thhalv10014023m.g' => 'esa', 'TPR.G12393' => 'tpr', 'TPR.G12410' => 'tpr', 'TPR.G30900' => 'tpr', 'TPR.G33100' => 'tpr', 'TWI09G0841' => 'twi', 'TWI63G0194' => 'twi', 'TWI63G1405' => 'twi', 'unitig_46.g18218' => 'ugi', 'unitig_748.g7499' => 'ugi', 'vmacro05449' => 'vma', 'vmacro10059' => 'vma', 'vmacro20672' => 'vma', 'VMungo0647G0800' => 'vmu', 'VMungo1309G1339' => 'vmu', 'VMungo1309G3096' => 'vmu', 'Zm00001eb122290' => 'zma', 'Zm00001eb337020' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D002393', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D002393' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D002393', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '292', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D002393' ) ), 'genes' => array( 'A01p30900' => 'bna', 'A03p02440' => 'bna', 'A03p43620' => 'bna', 'A07p07960' => 'bna', 'Aa31LG11G6770' => 'aar', 'Aa31LG8G11090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1111' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.362' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3299' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2876' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.171' => 'aag', 'Actinidia00937' => 'ach', 'Actinidia13423' => 'ach', 'Actinidia13923' => 'ach', 'Actinidia14641' => 'ach', 'Ah.14g081380' => 'amhyb', 'Ah.16g103310' => 'amhyb', 'AL3G39820' => 'aly', 'AL4G17820' => 'aly', 'AL6G15650' => 'aly', 'Aqoxy4G02625' => 'aox', 'Aqoxy7G01831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.JV7TC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV3ZRB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP9K23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ853S' => 'arhy', 'AT3G24350' => 'ath', 'AT5G05760' => 'ath', 'ATR0121G009' => 'atr', 'ATR0618G234' => 'atr', 'Atru.chr12.6_Atru.chr12.7' => 'acertr', 'Atru.chr7.1293' => 'acertr', 'Atru.chr7.2320' => 'acertr', 'AUR62011032' => 'cqu', 'AUR62012228' => 'cqu', 'AUR62022860' => 'cqu', 'AUR62033405' => 'cqu', 'AUR62039509' => 'cqu', 'BcaB01g05751' => 'bca', 'BcaB01g05963' => 'bca', 'BcaB03g14588' => 'bca', 'BcaB04g20390' => 'bca', 'BcaB06g26621' => 'bca', 'BcaC01g03317' => 'bca', 'BcaC06g35690' => 'bca', 'BcaC08g42817' => 'bca', 'BcaNung07047' => 'bca', 'BolC1t03880H' => 'bol', 'BolC3t12831H' => 'bol', 'BolC3t17633H' => 'bol', 'BolC7t41669H' => 'bol', 'BraA01t03219Z' => 'bra', 'BraA03t09605Z' => 'bra', 'BraA03t13499Z' => 'bra', 'BraA07t28583Z' => 'bra', 'C01p39300' => 'bna', 'C03p02770' => 'bna', 'C03p53730' => 'bna', 'C06p00290' => 'bna', 'C07p12010' => 'bna', 'CAN.G21.21' => 'can', 'CAN.G248.27' => 'can', 'CANSAT25G3278' => 'cansat', 'CANSAT54G1873' => 'cansat', 'CANSAT56G0808' => 'cansat', 'CARHR100450' => 'chi', 'CARHR207510' => 'chi', 'Carub.0003s2469' => 'cru', 'Carub.0006s0466' => 'cru', 'Ca_15693_v3' => 'car', 'Ca_15694_v3' => 'car', 'CBR_g58816' => 'cbr', 'Cc06_g09300' => 'ccan', 'Cc06_g09310' => 'ccan', 'CDE06G2071' => 'cde', 'CDE07G1083' => 'cde', 'Cfa024165' => 'cfa', 'Ciclev10008805m.g' => 'ccl', 'Ciclev10008850m.g' => 'ccl', 'Ciclev10031758m.g' => 'ccl', 'CiPaw.01G297000' => 'cil', 'CiPaw.07G217300' => 'cil', 'CiPaw.08G016000' => 'cil', 'ClCG07G004070' => 'cla', 'ClCG08G012870' => 'cla', 'COL.COLO4_25632' => 'col', 'Cpa.g.sc19.208' => 'cpa', 'Cpa.g.sc23.145' => 'cpa', 'Cre16.g692050' => 'cre', 'CsaV3_5G008990' => 'csa', 'CSS0005321' => 'camsi', 'CSS0014891' => 'camsi', 'CSS0015478' => 'camsi', 'CSS0023863' => 'camsi', 'CSS0039849' => 'camsi', 'Dinv13744' => 'din', 'Dinv20972' => 'din', 'Dinv21033' => 'din', 'Dinv34410' => 'din', 'Dinv35878' => 'din', 'Dinv36602' => 'din', 'Dinv41574' => 'din', 'Duzib114G1007' => 'dzi', 'Duzib150G0091' => 'dzi', 'Duzib168G0800' => 'dzi', 'Duzib168G0991' => 'dzi', 'Duzib187G1129' => 'dzi', 'EL10Ac1g02021' => 'bvu', 'EL10Ac2g04806' => 'bvu', 'EL10Ac8g18546' => 'bvu', 'Eucgr.C02861' => 'egr', 'Eucgr.C02862' => 'egr', 'Eucgr.C02867' => 'egr', 'Eucgr.G03043' => 'egr', 'FAN01G0378' => 'fan', 'FAN03G0360' => 'fan', 'FAN06G1269' => 'fan', 'FAN10G0698' => 'fan', 'FAN15G0251' => 'fan', 'FAN20G1565' => 'fan', 'FAN24G3124' => 'fan', 'FAN27G0742' => 'fan', 'FvH4_2g30200' => 'fve', 'FvH4_7g24180' => 'fve', 'Glyma.02G255700' => 'gma', 'Glyma.04G072700' => 'gma', 'Glyma.04G072800' => 'gma', 'Glyma.06G073900' => 'gma', 'Glyma.06G074000' => 'gma', 'Glyma.U031123' => 'gma', 'Gohir.A05G011000' => 'ghi', 'Gohir.A06G048200' => 'ghi', 'Gohir.A10G233800' => 'ghi', 'Gohir.A13G203800' => 'ghi', 'Gohir.D05G011700' => 'ghi', 'Gohir.D06G048200' => 'ghi', 'Gohir.D10G246100' => 'ghi', 'Gohir.D13G209100' => 'ghi', 'Gorai.009G012000' => 'gra', 'Gorai.010G054000' => 'gra', 'Gorai.011G283800' => 'gra', 'Gorai.013G238200' => 'gra', 'GSVIVG01015436001' => 'vvi', 'GSVIVG01032856001' => 'vvi', 'GSVIVG01035729001' => 'vvi', 'HanXRQChr03g0062001' => 'han', 'HanXRQChr09g0240451' => 'han', 'HanXRQChr10g0317401' => 'han', 'HanXRQChr12g0370551' => 'han', 'Haze_17198' => 'cav', 'Haze_21627' => 'cav', 'Haze_27118' => 'cav', 'Hma1.2p1_0018F.1_g013150' => 'hma', 'Hma1.2p1_0175F.1_g077320' => 'hma', 'HPP92_018348' => 'vpl', 'HPP92_018349' => 'vpl', 'HPP92_018382' => 'vpl', 'Hund09179' => 'sun', 'Hund13839' => 'sun', 'Hund26116' => 'sun', 'Lalb_Chr08g0243771' => 'lal', 'Lalb_Chr11g0064001' => 'lal', 'Lalb_Chr17g0346691' => 'lal', 'Lj1g0015322' => 'lja', 'Lj1g0018321' => 'lja', 'Lj7C641G12' => 'lonja', 'Lj8A70T41' => 'lonja', 'LjContig00357g0020435' => 'lja', 'Lsat_1_v5_gn_5_99821' => 'lsa', 'Lsat_1_v5_gn_7_43121' => 'lsa', 'Lsat_1_v5_gn_8_12440' => 'lsa', 'Lsat_1_v5_gn_8_94641' => 'lsa', 'Manes.07G127200' => 'mes', 'Manes.16G064900' => 'mes', 'Mapoly0036s0047' => 'mpo', 'MBI01_g10037_MAGBIO' => 'mbi', 'MBI04_g20760_MAGBIO' => 'mbi', 'MBI14_g09424_MAGBIO' => 'mbi', 'MBI18_g28884_MAGBIO' => 'mbi', 'MBI18_g36458_MAGBIO' => 'mbi', 'MCO02G165' => 'mco', 'MD01G1149000' => 'mdo', 'MD08G1135700' => 'mdo', 'MD15G1114700' => 'mdo', 'MD15G1114800' => 'mdo', 'MD15G1190200' => 'mdo', 'Medtr3g108160' => 'mtr', 'Medtr5g093600' => 'mtr', 'MELO3C011211.2' => 'cme', 'MELO3C025172.2' => 'cme', 'Migut.A00270' => 'egut', 'Migut.E01503' => 'egut', 'Migut.F01414' => 'egut', 'MSTRG.14003' => 'ama', 'MSTRG.25877' => 'ama', 'MSTRG.8319' => 'ama', 'Nitab4.5_0000125g0090' => 'nta', 'Nitab4.5_0000802g0170' => 'nta', 'Nitab4.5_0001346g0010' => 'nta', 'Nitab4.5_0011857g0010' => 'nta', 'Nn2g11427' => 'nnu', 'Nn2g11829' => 'nnu', 'Nn8g39268' => 'nnu', 'Oeu027166.1' => 'oeu', 'Oeu045174.1' => 'oeu', 'Os01g0179200' => 'osa', 'Peaxi162Scf00105g01218' => 'pax', 'Peaxi162Scf01313g00119' => 'pax', 'PGR044G1448' => 'pgr', 'PGSC0003DMG400004557' => 'stu', 'PGSC0003DMG400014503' => 'stu', 'PGSC0003DMG400018386' => 'stu', 'Phvul.008G225400' => 'pvu', 'Phvul.009G098500' => 'pvu', 'Phvul.009G098600' => 'pvu', 'Potri.006G157000' => 'ptr', 'Potri.010G191100' => 'ptr', 'Potri.018G072400' => 'ptr', 'Pp3c13_17240' => 'ppa', 'Pp3c3_23960' => 'ppa', 'Prupe.1G466200' => 'ppe', 'Prupe.2G247700' => 'ppe', 'Prupe.7G226900' => 'ppe', 'Psat2g012720' => 'psa', 'Psat5g026920' => 'psa', 'PSO063G6573' => 'pso', 'PSO339G0485' => 'pso', 'PSO782G3325' => 'pso', 'PSO801G0669' => 'pso', 'QL12p031209' => 'qlo', 'RcHm_v2.0_Chr1g0369761' => 'rch', 'RcHm_v2.0_Chr6g0312681' => 'rch', 'Rhsim01G0091400' => 'rsi', 'Rhsim09G0173400' => 'rsi', 'Sabra06G0123200' => 'sbr', 'Sabra10G0147100' => 'sbr', 'Sabra18G0064200' => 'sbr', 'SalBow4G1136' => 'sbo', 'SalBow6G5206' => 'sbo', 'SalBow8G4140' => 'sbo', 'Sc11g0007210' => 'sci', 'Sc18g0001010' => 'sci', 'Sed0005671' => 'sed', 'Sed0013961' => 'sed', 'Sed0020602' => 'sed', 'Sed0023487' => 'sed', 'SEGI_03224' => 'sgi', 'SEGI_04853' => 'sgi', 'SEGI_13325' => 'sgi', 'SEGI_15123' => 'sgi', 'SEGI_22729' => 'sgi', 'SEGI_22935' => 'sgi', 'SGA_v2.0_scaffold163G38094' => 'sas', 'SGA_v2.0_scaffold169G38634' => 'sas', 'SMO203G0172' => 'smo', 'SMO357G0001' => 'smo', 'Solyc07g054140.3' => 'sly', 'Solyc08g067910.3' => 'sly', 'Sopen07g028060' => 'spe', 'Sopen08g021820' => 'spe', 'Sp3g22160' => 'spa', 'Sp6g37140' => 'spa', 'TAR624G0306' => 'tar', 'TAR626G1176' => 'tar', 'TAR633G1402' => 'tar', 'TAR636G2212' => 'tar', 'THA.LOC104804580' => 'tha', 'THA.LOC104816556' => 'tha', 'Thecc.09G115100' => 'tca', 'Thecc.09G115200' => 'tca', 'Thecc.10G023000' => 'tca', 'Thhalv10002594m.g' => 'esa', 'Thhalv10014023m.g' => 'esa', 'TPR.G12393' => 'tpr', 'TPR.G12410' => 'tpr', 'TPR.G30900' => 'tpr', 'TPR.G33100' => 'tpr', 'TWI09G0841' => 'twi', 'TWI63G0194' => 'twi', 'TWI63G1405' => 'twi', 'unitig_46.g18218' => 'ugi', 'unitig_748.g7499' => 'ugi', 'vmacro05449' => 'vma', 'vmacro10059' => 'vma', 'vmacro20672' => 'vma', 'VMungo0647G0800' => 'vmu', 'VMungo1309G1339' => 'vmu', 'VMungo1309G3096' => 'vmu', 'Zm00001eb122290' => 'zma', 'Zm00001eb337020' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D002393' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D002393' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D002393' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D002393' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D002393', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '292', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p30900' => 'bna', 'A03p02440' => 'bna', 'A03p43620' => 'bna', 'A07p07960' => 'bna', 'Aa31LG11G6770' => 'aar', 'Aa31LG8G11090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1111' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.362' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3299' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2876' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.171' => 'aag', 'Actinidia00937' => 'ach', 'Actinidia13423' => 'ach', 'Actinidia13923' => 'ach', 'Actinidia14641' => 'ach', 'Ah.14g081380' => 'amhyb', 'Ah.16g103310' => 'amhyb', 'AL3G39820' => 'aly', 'AL4G17820' => 'aly', 'AL6G15650' => 'aly', 'Aqoxy4G02625' => 'aox', 'Aqoxy7G01831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.JV7TC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV3ZRB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP9K23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ853S' => 'arhy', 'AT3G24350' => 'ath', 'AT5G05760' => 'ath', 'ATR0121G009' => 'atr', 'ATR0618G234' => 'atr', 'Atru.chr12.6_Atru.chr12.7' => 'acertr', 'Atru.chr7.1293' => 'acertr', 'Atru.chr7.2320' => 'acertr', 'AUR62011032' => 'cqu', 'AUR62012228' => 'cqu', 'AUR62022860' => 'cqu', 'AUR62033405' => 'cqu', 'AUR62039509' => 'cqu', 'BcaB01g05751' => 'bca', 'BcaB01g05963' => 'bca', 'BcaB03g14588' => 'bca', 'BcaB04g20390' => 'bca', 'BcaB06g26621' => 'bca', 'BcaC01g03317' => 'bca', 'BcaC06g35690' => 'bca', 'BcaC08g42817' => 'bca', 'BcaNung07047' => 'bca', 'BolC1t03880H' => 'bol', 'BolC3t12831H' => 'bol', 'BolC3t17633H' => 'bol', 'BolC7t41669H' => 'bol', 'BraA01t03219Z' => 'bra', 'BraA03t09605Z' => 'bra', 'BraA03t13499Z' => 'bra', 'BraA07t28583Z' => 'bra', 'C01p39300' => 'bna', 'C03p02770' => 'bna', 'C03p53730' => 'bna', 'C06p00290' => 'bna', 'C07p12010' => 'bna', 'CAN.G21.21' => 'can', 'CAN.G248.27' => 'can', 'CANSAT25G3278' => 'cansat', 'CANSAT54G1873' => 'cansat', 'CANSAT56G0808' => 'cansat', 'CARHR100450' => 'chi', 'CARHR207510' => 'chi', 'Carub.0003s2469' => 'cru', 'Carub.0006s0466' => 'cru', 'Ca_15693_v3' => 'car', 'Ca_15694_v3' => 'car', 'CBR_g58816' => 'cbr', 'Cc06_g09300' => 'ccan', 'Cc06_g09310' => 'ccan', 'CDE06G2071' => 'cde', 'CDE07G1083' => 'cde', 'Cfa024165' => 'cfa', 'Ciclev10008805m.g' => 'ccl', 'Ciclev10008850m.g' => 'ccl', 'Ciclev10031758m.g' => 'ccl', 'CiPaw.01G297000' => 'cil', 'CiPaw.07G217300' => 'cil', 'CiPaw.08G016000' => 'cil', 'ClCG07G004070' => 'cla', 'ClCG08G012870' => 'cla', 'COL.COLO4_25632' => 'col', 'Cpa.g.sc19.208' => 'cpa', 'Cpa.g.sc23.145' => 'cpa', 'Cre16.g692050' => 'cre', 'CsaV3_5G008990' => 'csa', 'CSS0005321' => 'camsi', 'CSS0014891' => 'camsi', 'CSS0015478' => 'camsi', 'CSS0023863' => 'camsi', 'CSS0039849' => 'camsi', 'Dinv13744' => 'din', 'Dinv20972' => 'din', 'Dinv21033' => 'din', 'Dinv34410' => 'din', 'Dinv35878' => 'din', 'Dinv36602' => 'din', 'Dinv41574' => 'din', 'Duzib114G1007' => 'dzi', 'Duzib150G0091' => 'dzi', 'Duzib168G0800' => 'dzi', 'Duzib168G0991' => 'dzi', 'Duzib187G1129' => 'dzi', 'EL10Ac1g02021' => 'bvu', 'EL10Ac2g04806' => 'bvu', 'EL10Ac8g18546' => 'bvu', 'Eucgr.C02861' => 'egr', 'Eucgr.C02862' => 'egr', 'Eucgr.C02867' => 'egr', 'Eucgr.G03043' => 'egr', 'FAN01G0378' => 'fan', 'FAN03G0360' => 'fan', 'FAN06G1269' => 'fan', 'FAN10G0698' => 'fan', 'FAN15G0251' => 'fan', 'FAN20G1565' => 'fan', 'FAN24G3124' => 'fan', 'FAN27G0742' => 'fan', 'FvH4_2g30200' => 'fve', 'FvH4_7g24180' => 'fve', 'Glyma.02G255700' => 'gma', 'Glyma.04G072700' => 'gma', 'Glyma.04G072800' => 'gma', 'Glyma.06G073900' => 'gma', 'Glyma.06G074000' => 'gma', 'Glyma.U031123' => 'gma', 'Gohir.A05G011000' => 'ghi', 'Gohir.A06G048200' => 'ghi', 'Gohir.A10G233800' => 'ghi', 'Gohir.A13G203800' => 'ghi', 'Gohir.D05G011700' => 'ghi', 'Gohir.D06G048200' => 'ghi', 'Gohir.D10G246100' => 'ghi', 'Gohir.D13G209100' => 'ghi', 'Gorai.009G012000' => 'gra', 'Gorai.010G054000' => 'gra', 'Gorai.011G283800' => 'gra', 'Gorai.013G238200' => 'gra', 'GSVIVG01015436001' => 'vvi', 'GSVIVG01032856001' => 'vvi', 'GSVIVG01035729001' => 'vvi', 'HanXRQChr03g0062001' => 'han', 'HanXRQChr09g0240451' => 'han', 'HanXRQChr10g0317401' => 'han', 'HanXRQChr12g0370551' => 'han', 'Haze_17198' => 'cav', 'Haze_21627' => 'cav', 'Haze_27118' => 'cav', 'Hma1.2p1_0018F.1_g013150' => 'hma', 'Hma1.2p1_0175F.1_g077320' => 'hma', 'HPP92_018348' => 'vpl', 'HPP92_018349' => 'vpl', 'HPP92_018382' => 'vpl', 'Hund09179' => 'sun', 'Hund13839' => 'sun', 'Hund26116' => 'sun', 'Lalb_Chr08g0243771' => 'lal', 'Lalb_Chr11g0064001' => 'lal', 'Lalb_Chr17g0346691' => 'lal', 'Lj1g0015322' => 'lja', 'Lj1g0018321' => 'lja', 'Lj7C641G12' => 'lonja', 'Lj8A70T41' => 'lonja', 'LjContig00357g0020435' => 'lja', 'Lsat_1_v5_gn_5_99821' => 'lsa', 'Lsat_1_v5_gn_7_43121' => 'lsa', 'Lsat_1_v5_gn_8_12440' => 'lsa', 'Lsat_1_v5_gn_8_94641' => 'lsa', 'Manes.07G127200' => 'mes', 'Manes.16G064900' => 'mes', 'Mapoly0036s0047' => 'mpo', 'MBI01_g10037_MAGBIO' => 'mbi', 'MBI04_g20760_MAGBIO' => 'mbi', 'MBI14_g09424_MAGBIO' => 'mbi', 'MBI18_g28884_MAGBIO' => 'mbi', 'MBI18_g36458_MAGBIO' => 'mbi', 'MCO02G165' => 'mco', 'MD01G1149000' => 'mdo', 'MD08G1135700' => 'mdo', 'MD15G1114700' => 'mdo', 'MD15G1114800' => 'mdo', 'MD15G1190200' => 'mdo', 'Medtr3g108160' => 'mtr', 'Medtr5g093600' => 'mtr', 'MELO3C011211.2' => 'cme', 'MELO3C025172.2' => 'cme', 'Migut.A00270' => 'egut', 'Migut.E01503' => 'egut', 'Migut.F01414' => 'egut', 'MSTRG.14003' => 'ama', 'MSTRG.25877' => 'ama', 'MSTRG.8319' => 'ama', 'Nitab4.5_0000125g0090' => 'nta', 'Nitab4.5_0000802g0170' => 'nta', 'Nitab4.5_0001346g0010' => 'nta', 'Nitab4.5_0011857g0010' => 'nta', 'Nn2g11427' => 'nnu', 'Nn2g11829' => 'nnu', 'Nn8g39268' => 'nnu', 'Oeu027166.1' => 'oeu', 'Oeu045174.1' => 'oeu', 'Os01g0179200' => 'osa', 'Peaxi162Scf00105g01218' => 'pax', 'Peaxi162Scf01313g00119' => 'pax', 'PGR044G1448' => 'pgr', 'PGSC0003DMG400004557' => 'stu', 'PGSC0003DMG400014503' => 'stu', 'PGSC0003DMG400018386' => 'stu', 'Phvul.008G225400' => 'pvu', 'Phvul.009G098500' => 'pvu', 'Phvul.009G098600' => 'pvu', 'Potri.006G157000' => 'ptr', 'Potri.010G191100' => 'ptr', 'Potri.018G072400' => 'ptr', 'Pp3c13_17240' => 'ppa', 'Pp3c3_23960' => 'ppa', 'Prupe.1G466200' => 'ppe', 'Prupe.2G247700' => 'ppe', 'Prupe.7G226900' => 'ppe', 'Psat2g012720' => 'psa', 'Psat5g026920' => 'psa', 'PSO063G6573' => 'pso', 'PSO339G0485' => 'pso', 'PSO782G3325' => 'pso', 'PSO801G0669' => 'pso', 'QL12p031209' => 'qlo', 'RcHm_v2.0_Chr1g0369761' => 'rch', 'RcHm_v2.0_Chr6g0312681' => 'rch', 'Rhsim01G0091400' => 'rsi', 'Rhsim09G0173400' => 'rsi', 'Sabra06G0123200' => 'sbr', 'Sabra10G0147100' => 'sbr', 'Sabra18G0064200' => 'sbr', 'SalBow4G1136' => 'sbo', 'SalBow6G5206' => 'sbo', 'SalBow8G4140' => 'sbo', 'Sc11g0007210' => 'sci', 'Sc18g0001010' => 'sci', 'Sed0005671' => 'sed', 'Sed0013961' => 'sed', 'Sed0020602' => 'sed', 'Sed0023487' => 'sed', 'SEGI_03224' => 'sgi', 'SEGI_04853' => 'sgi', 'SEGI_13325' => 'sgi', 'SEGI_15123' => 'sgi', 'SEGI_22729' => 'sgi', 'SEGI_22935' => 'sgi', 'SGA_v2.0_scaffold163G38094' => 'sas', 'SGA_v2.0_scaffold169G38634' => 'sas', 'SMO203G0172' => 'smo', 'SMO357G0001' => 'smo', 'Solyc07g054140.3' => 'sly', 'Solyc08g067910.3' => 'sly', 'Sopen07g028060' => 'spe', 'Sopen08g021820' => 'spe', 'Sp3g22160' => 'spa', 'Sp6g37140' => 'spa', 'TAR624G0306' => 'tar', 'TAR626G1176' => 'tar', 'TAR633G1402' => 'tar', 'TAR636G2212' => 'tar', 'THA.LOC104804580' => 'tha', 'THA.LOC104816556' => 'tha', 'Thecc.09G115100' => 'tca', 'Thecc.09G115200' => 'tca', 'Thecc.10G023000' => 'tca', 'Thhalv10002594m.g' => 'esa', 'Thhalv10014023m.g' => 'esa', 'TPR.G12393' => 'tpr', 'TPR.G12410' => 'tpr', 'TPR.G30900' => 'tpr', 'TPR.G33100' => 'tpr', 'TWI09G0841' => 'twi', 'TWI63G0194' => 'twi', 'TWI63G1405' => 'twi', 'unitig_46.g18218' => 'ugi', 'unitig_748.g7499' => 'ugi', 'vmacro05449' => 'vma', 'vmacro10059' => 'vma', 'vmacro20672' => 'vma', 'VMungo0647G0800' => 'vmu', 'VMungo1309G1339' => 'vmu', 'VMungo1309G3096' => 'vmu', 'Zm00001eb122290' => 'zma', 'Zm00001eb337020' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D002393', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D002393' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D002393', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '292', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D002393' ) ), 'genes' => array( 'A01p30900' => 'bna', 'A03p02440' => 'bna', 'A03p43620' => 'bna', 'A07p07960' => 'bna', 'Aa31LG11G6770' => 'aar', 'Aa31LG8G11090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1111' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.362' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3299' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2876' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.171' => 'aag', 'Actinidia00937' => 'ach', 'Actinidia13423' => 'ach', 'Actinidia13923' => 'ach', 'Actinidia14641' => 'ach', 'Ah.14g081380' => 'amhyb', 'Ah.16g103310' => 'amhyb', 'AL3G39820' => 'aly', 'AL4G17820' => 'aly', 'AL6G15650' => 'aly', 'Aqoxy4G02625' => 'aox', 'Aqoxy7G01831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.JV7TC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV3ZRB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP9K23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ853S' => 'arhy', 'AT3G24350' => 'ath', 'AT5G05760' => 'ath', 'ATR0121G009' => 'atr', 'ATR0618G234' => 'atr', 'Atru.chr12.6_Atru.chr12.7' => 'acertr', 'Atru.chr7.1293' => 'acertr', 'Atru.chr7.2320' => 'acertr', 'AUR62011032' => 'cqu', 'AUR62012228' => 'cqu', 'AUR62022860' => 'cqu', 'AUR62033405' => 'cqu', 'AUR62039509' => 'cqu', 'BcaB01g05751' => 'bca', 'BcaB01g05963' => 'bca', 'BcaB03g14588' => 'bca', 'BcaB04g20390' => 'bca', 'BcaB06g26621' => 'bca', 'BcaC01g03317' => 'bca', 'BcaC06g35690' => 'bca', 'BcaC08g42817' => 'bca', 'BcaNung07047' => 'bca', 'BolC1t03880H' => 'bol', 'BolC3t12831H' => 'bol', 'BolC3t17633H' => 'bol', 'BolC7t41669H' => 'bol', 'BraA01t03219Z' => 'bra', 'BraA03t09605Z' => 'bra', 'BraA03t13499Z' => 'bra', 'BraA07t28583Z' => 'bra', 'C01p39300' => 'bna', 'C03p02770' => 'bna', 'C03p53730' => 'bna', 'C06p00290' => 'bna', 'C07p12010' => 'bna', 'CAN.G21.21' => 'can', 'CAN.G248.27' => 'can', 'CANSAT25G3278' => 'cansat', 'CANSAT54G1873' => 'cansat', 'CANSAT56G0808' => 'cansat', 'CARHR100450' => 'chi', 'CARHR207510' => 'chi', 'Carub.0003s2469' => 'cru', 'Carub.0006s0466' => 'cru', 'Ca_15693_v3' => 'car', 'Ca_15694_v3' => 'car', 'CBR_g58816' => 'cbr', 'Cc06_g09300' => 'ccan', 'Cc06_g09310' => 'ccan', 'CDE06G2071' => 'cde', 'CDE07G1083' => 'cde', 'Cfa024165' => 'cfa', 'Ciclev10008805m.g' => 'ccl', 'Ciclev10008850m.g' => 'ccl', 'Ciclev10031758m.g' => 'ccl', 'CiPaw.01G297000' => 'cil', 'CiPaw.07G217300' => 'cil', 'CiPaw.08G016000' => 'cil', 'ClCG07G004070' => 'cla', 'ClCG08G012870' => 'cla', 'COL.COLO4_25632' => 'col', 'Cpa.g.sc19.208' => 'cpa', 'Cpa.g.sc23.145' => 'cpa', 'Cre16.g692050' => 'cre', 'CsaV3_5G008990' => 'csa', 'CSS0005321' => 'camsi', 'CSS0014891' => 'camsi', 'CSS0015478' => 'camsi', 'CSS0023863' => 'camsi', 'CSS0039849' => 'camsi', 'Dinv13744' => 'din', 'Dinv20972' => 'din', 'Dinv21033' => 'din', 'Dinv34410' => 'din', 'Dinv35878' => 'din', 'Dinv36602' => 'din', 'Dinv41574' => 'din', 'Duzib114G1007' => 'dzi', 'Duzib150G0091' => 'dzi', 'Duzib168G0800' => 'dzi', 'Duzib168G0991' => 'dzi', 'Duzib187G1129' => 'dzi', 'EL10Ac1g02021' => 'bvu', 'EL10Ac2g04806' => 'bvu', 'EL10Ac8g18546' => 'bvu', 'Eucgr.C02861' => 'egr', 'Eucgr.C02862' => 'egr', 'Eucgr.C02867' => 'egr', 'Eucgr.G03043' => 'egr', 'FAN01G0378' => 'fan', 'FAN03G0360' => 'fan', 'FAN06G1269' => 'fan', 'FAN10G0698' => 'fan', 'FAN15G0251' => 'fan', 'FAN20G1565' => 'fan', 'FAN24G3124' => 'fan', 'FAN27G0742' => 'fan', 'FvH4_2g30200' => 'fve', 'FvH4_7g24180' => 'fve', 'Glyma.02G255700' => 'gma', 'Glyma.04G072700' => 'gma', 'Glyma.04G072800' => 'gma', 'Glyma.06G073900' => 'gma', 'Glyma.06G074000' => 'gma', 'Glyma.U031123' => 'gma', 'Gohir.A05G011000' => 'ghi', 'Gohir.A06G048200' => 'ghi', 'Gohir.A10G233800' => 'ghi', 'Gohir.A13G203800' => 'ghi', 'Gohir.D05G011700' => 'ghi', 'Gohir.D06G048200' => 'ghi', 'Gohir.D10G246100' => 'ghi', 'Gohir.D13G209100' => 'ghi', 'Gorai.009G012000' => 'gra', 'Gorai.010G054000' => 'gra', 'Gorai.011G283800' => 'gra', 'Gorai.013G238200' => 'gra', 'GSVIVG01015436001' => 'vvi', 'GSVIVG01032856001' => 'vvi', 'GSVIVG01035729001' => 'vvi', 'HanXRQChr03g0062001' => 'han', 'HanXRQChr09g0240451' => 'han', 'HanXRQChr10g0317401' => 'han', 'HanXRQChr12g0370551' => 'han', 'Haze_17198' => 'cav', 'Haze_21627' => 'cav', 'Haze_27118' => 'cav', 'Hma1.2p1_0018F.1_g013150' => 'hma', 'Hma1.2p1_0175F.1_g077320' => 'hma', 'HPP92_018348' => 'vpl', 'HPP92_018349' => 'vpl', 'HPP92_018382' => 'vpl', 'Hund09179' => 'sun', 'Hund13839' => 'sun', 'Hund26116' => 'sun', 'Lalb_Chr08g0243771' => 'lal', 'Lalb_Chr11g0064001' => 'lal', 'Lalb_Chr17g0346691' => 'lal', 'Lj1g0015322' => 'lja', 'Lj1g0018321' => 'lja', 'Lj7C641G12' => 'lonja', 'Lj8A70T41' => 'lonja', 'LjContig00357g0020435' => 'lja', 'Lsat_1_v5_gn_5_99821' => 'lsa', 'Lsat_1_v5_gn_7_43121' => 'lsa', 'Lsat_1_v5_gn_8_12440' => 'lsa', 'Lsat_1_v5_gn_8_94641' => 'lsa', 'Manes.07G127200' => 'mes', 'Manes.16G064900' => 'mes', 'Mapoly0036s0047' => 'mpo', 'MBI01_g10037_MAGBIO' => 'mbi', 'MBI04_g20760_MAGBIO' => 'mbi', 'MBI14_g09424_MAGBIO' => 'mbi', 'MBI18_g28884_MAGBIO' => 'mbi', 'MBI18_g36458_MAGBIO' => 'mbi', 'MCO02G165' => 'mco', 'MD01G1149000' => 'mdo', 'MD08G1135700' => 'mdo', 'MD15G1114700' => 'mdo', 'MD15G1114800' => 'mdo', 'MD15G1190200' => 'mdo', 'Medtr3g108160' => 'mtr', 'Medtr5g093600' => 'mtr', 'MELO3C011211.2' => 'cme', 'MELO3C025172.2' => 'cme', 'Migut.A00270' => 'egut', 'Migut.E01503' => 'egut', 'Migut.F01414' => 'egut', 'MSTRG.14003' => 'ama', 'MSTRG.25877' => 'ama', 'MSTRG.8319' => 'ama', 'Nitab4.5_0000125g0090' => 'nta', 'Nitab4.5_0000802g0170' => 'nta', 'Nitab4.5_0001346g0010' => 'nta', 'Nitab4.5_0011857g0010' => 'nta', 'Nn2g11427' => 'nnu', 'Nn2g11829' => 'nnu', 'Nn8g39268' => 'nnu', 'Oeu027166.1' => 'oeu', 'Oeu045174.1' => 'oeu', 'Os01g0179200' => 'osa', 'Peaxi162Scf00105g01218' => 'pax', 'Peaxi162Scf01313g00119' => 'pax', 'PGR044G1448' => 'pgr', 'PGSC0003DMG400004557' => 'stu', 'PGSC0003DMG400014503' => 'stu', 'PGSC0003DMG400018386' => 'stu', 'Phvul.008G225400' => 'pvu', 'Phvul.009G098500' => 'pvu', 'Phvul.009G098600' => 'pvu', 'Potri.006G157000' => 'ptr', 'Potri.010G191100' => 'ptr', 'Potri.018G072400' => 'ptr', 'Pp3c13_17240' => 'ppa', 'Pp3c3_23960' => 'ppa', 'Prupe.1G466200' => 'ppe', 'Prupe.2G247700' => 'ppe', 'Prupe.7G226900' => 'ppe', 'Psat2g012720' => 'psa', 'Psat5g026920' => 'psa', 'PSO063G6573' => 'pso', 'PSO339G0485' => 'pso', 'PSO782G3325' => 'pso', 'PSO801G0669' => 'pso', 'QL12p031209' => 'qlo', 'RcHm_v2.0_Chr1g0369761' => 'rch', 'RcHm_v2.0_Chr6g0312681' => 'rch', 'Rhsim01G0091400' => 'rsi', 'Rhsim09G0173400' => 'rsi', 'Sabra06G0123200' => 'sbr', 'Sabra10G0147100' => 'sbr', 'Sabra18G0064200' => 'sbr', 'SalBow4G1136' => 'sbo', 'SalBow6G5206' => 'sbo', 'SalBow8G4140' => 'sbo', 'Sc11g0007210' => 'sci', 'Sc18g0001010' => 'sci', 'Sed0005671' => 'sed', 'Sed0013961' => 'sed', 'Sed0020602' => 'sed', 'Sed0023487' => 'sed', 'SEGI_03224' => 'sgi', 'SEGI_04853' => 'sgi', 'SEGI_13325' => 'sgi', 'SEGI_15123' => 'sgi', 'SEGI_22729' => 'sgi', 'SEGI_22935' => 'sgi', 'SGA_v2.0_scaffold163G38094' => 'sas', 'SGA_v2.0_scaffold169G38634' => 'sas', 'SMO203G0172' => 'smo', 'SMO357G0001' => 'smo', 'Solyc07g054140.3' => 'sly', 'Solyc08g067910.3' => 'sly', 'Sopen07g028060' => 'spe', 'Sopen08g021820' => 'spe', 'Sp3g22160' => 'spa', 'Sp6g37140' => 'spa', 'TAR624G0306' => 'tar', 'TAR626G1176' => 'tar', 'TAR633G1402' => 'tar', 'TAR636G2212' => 'tar', 'THA.LOC104804580' => 'tha', 'THA.LOC104816556' => 'tha', 'Thecc.09G115100' => 'tca', 'Thecc.09G115200' => 'tca', 'Thecc.10G023000' => 'tca', 'Thhalv10002594m.g' => 'esa', 'Thhalv10014023m.g' => 'esa', 'TPR.G12393' => 'tpr', 'TPR.G12410' => 'tpr', 'TPR.G30900' => 'tpr', 'TPR.G33100' => 'tpr', 'TWI09G0841' => 'twi', 'TWI63G0194' => 'twi', 'TWI63G1405' => 'twi', 'unitig_46.g18218' => 'ugi', 'unitig_748.g7499' => 'ugi', 'vmacro05449' => 'vma', 'vmacro10059' => 'vma', 'vmacro20672' => 'vma', 'VMungo0647G0800' => 'vmu', 'VMungo1309G1339' => 'vmu', 'VMungo1309G3096' => 'vmu', 'Zm00001eb122290' => 'zma', 'Zm00001eb337020' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D002393' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D002393' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D002393' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D002393' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D002393', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '292', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p30900' => 'bna', 'A03p02440' => 'bna', 'A03p43620' => 'bna', 'A07p07960' => 'bna', 'Aa31LG11G6770' => 'aar', 'Aa31LG8G11090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1111' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.362' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3299' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2876' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.171' => 'aag', 'Actinidia00937' => 'ach', 'Actinidia13423' => 'ach', 'Actinidia13923' => 'ach', 'Actinidia14641' => 'ach', 'Ah.14g081380' => 'amhyb', 'Ah.16g103310' => 'amhyb', 'AL3G39820' => 'aly', 'AL4G17820' => 'aly', 'AL6G15650' => 'aly', 'Aqoxy4G02625' => 'aox', 'Aqoxy7G01831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.JV7TC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV3ZRB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP9K23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ853S' => 'arhy', 'AT3G24350' => 'ath', 'AT5G05760' => 'ath', 'ATR0121G009' => 'atr', 'ATR0618G234' => 'atr', 'Atru.chr12.6_Atru.chr12.7' => 'acertr', 'Atru.chr7.1293' => 'acertr', 'Atru.chr7.2320' => 'acertr', 'AUR62011032' => 'cqu', 'AUR62012228' => 'cqu', 'AUR62022860' => 'cqu', 'AUR62033405' => 'cqu', 'AUR62039509' => 'cqu', 'BcaB01g05751' => 'bca', 'BcaB01g05963' => 'bca', 'BcaB03g14588' => 'bca', 'BcaB04g20390' => 'bca', 'BcaB06g26621' => 'bca', 'BcaC01g03317' => 'bca', 'BcaC06g35690' => 'bca', 'BcaC08g42817' => 'bca', 'BcaNung07047' => 'bca', 'BolC1t03880H' => 'bol', 'BolC3t12831H' => 'bol', 'BolC3t17633H' => 'bol', 'BolC7t41669H' => 'bol', 'BraA01t03219Z' => 'bra', 'BraA03t09605Z' => 'bra', 'BraA03t13499Z' => 'bra', 'BraA07t28583Z' => 'bra', 'C01p39300' => 'bna', 'C03p02770' => 'bna', 'C03p53730' => 'bna', 'C06p00290' => 'bna', 'C07p12010' => 'bna', 'CAN.G21.21' => 'can', 'CAN.G248.27' => 'can', 'CANSAT25G3278' => 'cansat', 'CANSAT54G1873' => 'cansat', 'CANSAT56G0808' => 'cansat', 'CARHR100450' => 'chi', 'CARHR207510' => 'chi', 'Carub.0003s2469' => 'cru', 'Carub.0006s0466' => 'cru', 'Ca_15693_v3' => 'car', 'Ca_15694_v3' => 'car', 'CBR_g58816' => 'cbr', 'Cc06_g09300' => 'ccan', 'Cc06_g09310' => 'ccan', 'CDE06G2071' => 'cde', 'CDE07G1083' => 'cde', 'Cfa024165' => 'cfa', 'Ciclev10008805m.g' => 'ccl', 'Ciclev10008850m.g' => 'ccl', 'Ciclev10031758m.g' => 'ccl', 'CiPaw.01G297000' => 'cil', 'CiPaw.07G217300' => 'cil', 'CiPaw.08G016000' => 'cil', 'ClCG07G004070' => 'cla', 'ClCG08G012870' => 'cla', 'COL.COLO4_25632' => 'col', 'Cpa.g.sc19.208' => 'cpa', 'Cpa.g.sc23.145' => 'cpa', 'Cre16.g692050' => 'cre', 'CsaV3_5G008990' => 'csa', 'CSS0005321' => 'camsi', 'CSS0014891' => 'camsi', 'CSS0015478' => 'camsi', 'CSS0023863' => 'camsi', 'CSS0039849' => 'camsi', 'Dinv13744' => 'din', 'Dinv20972' => 'din', 'Dinv21033' => 'din', 'Dinv34410' => 'din', 'Dinv35878' => 'din', 'Dinv36602' => 'din', 'Dinv41574' => 'din', 'Duzib114G1007' => 'dzi', 'Duzib150G0091' => 'dzi', 'Duzib168G0800' => 'dzi', 'Duzib168G0991' => 'dzi', 'Duzib187G1129' => 'dzi', 'EL10Ac1g02021' => 'bvu', 'EL10Ac2g04806' => 'bvu', 'EL10Ac8g18546' => 'bvu', 'Eucgr.C02861' => 'egr', 'Eucgr.C02862' => 'egr', 'Eucgr.C02867' => 'egr', 'Eucgr.G03043' => 'egr', 'FAN01G0378' => 'fan', 'FAN03G0360' => 'fan', 'FAN06G1269' => 'fan', 'FAN10G0698' => 'fan', 'FAN15G0251' => 'fan', 'FAN20G1565' => 'fan', 'FAN24G3124' => 'fan', 'FAN27G0742' => 'fan', 'FvH4_2g30200' => 'fve', 'FvH4_7g24180' => 'fve', 'Glyma.02G255700' => 'gma', 'Glyma.04G072700' => 'gma', 'Glyma.04G072800' => 'gma', 'Glyma.06G073900' => 'gma', 'Glyma.06G074000' => 'gma', 'Glyma.U031123' => 'gma', 'Gohir.A05G011000' => 'ghi', 'Gohir.A06G048200' => 'ghi', 'Gohir.A10G233800' => 'ghi', 'Gohir.A13G203800' => 'ghi', 'Gohir.D05G011700' => 'ghi', 'Gohir.D06G048200' => 'ghi', 'Gohir.D10G246100' => 'ghi', 'Gohir.D13G209100' => 'ghi', 'Gorai.009G012000' => 'gra', 'Gorai.010G054000' => 'gra', 'Gorai.011G283800' => 'gra', 'Gorai.013G238200' => 'gra', 'GSVIVG01015436001' => 'vvi', 'GSVIVG01032856001' => 'vvi', 'GSVIVG01035729001' => 'vvi', 'HanXRQChr03g0062001' => 'han', 'HanXRQChr09g0240451' => 'han', 'HanXRQChr10g0317401' => 'han', 'HanXRQChr12g0370551' => 'han', 'Haze_17198' => 'cav', 'Haze_21627' => 'cav', 'Haze_27118' => 'cav', 'Hma1.2p1_0018F.1_g013150' => 'hma', 'Hma1.2p1_0175F.1_g077320' => 'hma', 'HPP92_018348' => 'vpl', 'HPP92_018349' => 'vpl', 'HPP92_018382' => 'vpl', 'Hund09179' => 'sun', 'Hund13839' => 'sun', 'Hund26116' => 'sun', 'Lalb_Chr08g0243771' => 'lal', 'Lalb_Chr11g0064001' => 'lal', 'Lalb_Chr17g0346691' => 'lal', 'Lj1g0015322' => 'lja', 'Lj1g0018321' => 'lja', 'Lj7C641G12' => 'lonja', 'Lj8A70T41' => 'lonja', 'LjContig00357g0020435' => 'lja', 'Lsat_1_v5_gn_5_99821' => 'lsa', 'Lsat_1_v5_gn_7_43121' => 'lsa', 'Lsat_1_v5_gn_8_12440' => 'lsa', 'Lsat_1_v5_gn_8_94641' => 'lsa', 'Manes.07G127200' => 'mes', 'Manes.16G064900' => 'mes', 'Mapoly0036s0047' => 'mpo', 'MBI01_g10037_MAGBIO' => 'mbi', 'MBI04_g20760_MAGBIO' => 'mbi', 'MBI14_g09424_MAGBIO' => 'mbi', 'MBI18_g28884_MAGBIO' => 'mbi', 'MBI18_g36458_MAGBIO' => 'mbi', 'MCO02G165' => 'mco', 'MD01G1149000' => 'mdo', 'MD08G1135700' => 'mdo', 'MD15G1114700' => 'mdo', 'MD15G1114800' => 'mdo', 'MD15G1190200' => 'mdo', 'Medtr3g108160' => 'mtr', 'Medtr5g093600' => 'mtr', 'MELO3C011211.2' => 'cme', 'MELO3C025172.2' => 'cme', 'Migut.A00270' => 'egut', 'Migut.E01503' => 'egut', 'Migut.F01414' => 'egut', 'MSTRG.14003' => 'ama', 'MSTRG.25877' => 'ama', 'MSTRG.8319' => 'ama', 'Nitab4.5_0000125g0090' => 'nta', 'Nitab4.5_0000802g0170' => 'nta', 'Nitab4.5_0001346g0010' => 'nta', 'Nitab4.5_0011857g0010' => 'nta', 'Nn2g11427' => 'nnu', 'Nn2g11829' => 'nnu', 'Nn8g39268' => 'nnu', 'Oeu027166.1' => 'oeu', 'Oeu045174.1' => 'oeu', 'Os01g0179200' => 'osa', 'Peaxi162Scf00105g01218' => 'pax', 'Peaxi162Scf01313g00119' => 'pax', 'PGR044G1448' => 'pgr', 'PGSC0003DMG400004557' => 'stu', 'PGSC0003DMG400014503' => 'stu', 'PGSC0003DMG400018386' => 'stu', 'Phvul.008G225400' => 'pvu', 'Phvul.009G098500' => 'pvu', 'Phvul.009G098600' => 'pvu', 'Potri.006G157000' => 'ptr', 'Potri.010G191100' => 'ptr', 'Potri.018G072400' => 'ptr', 'Pp3c13_17240' => 'ppa', 'Pp3c3_23960' => 'ppa', 'Prupe.1G466200' => 'ppe', 'Prupe.2G247700' => 'ppe', 'Prupe.7G226900' => 'ppe', 'Psat2g012720' => 'psa', 'Psat5g026920' => 'psa', 'PSO063G6573' => 'pso', 'PSO339G0485' => 'pso', 'PSO782G3325' => 'pso', 'PSO801G0669' => 'pso', 'QL12p031209' => 'qlo', 'RcHm_v2.0_Chr1g0369761' => 'rch', 'RcHm_v2.0_Chr6g0312681' => 'rch', 'Rhsim01G0091400' => 'rsi', 'Rhsim09G0173400' => 'rsi', 'Sabra06G0123200' => 'sbr', 'Sabra10G0147100' => 'sbr', 'Sabra18G0064200' => 'sbr', 'SalBow4G1136' => 'sbo', 'SalBow6G5206' => 'sbo', 'SalBow8G4140' => 'sbo', 'Sc11g0007210' => 'sci', 'Sc18g0001010' => 'sci', 'Sed0005671' => 'sed', 'Sed0013961' => 'sed', 'Sed0020602' => 'sed', 'Sed0023487' => 'sed', 'SEGI_03224' => 'sgi', 'SEGI_04853' => 'sgi', 'SEGI_13325' => 'sgi', 'SEGI_15123' => 'sgi', 'SEGI_22729' => 'sgi', 'SEGI_22935' => 'sgi', 'SGA_v2.0_scaffold163G38094' => 'sas', 'SGA_v2.0_scaffold169G38634' => 'sas', 'SMO203G0172' => 'smo', 'SMO357G0001' => 'smo', 'Solyc07g054140.3' => 'sly', 'Solyc08g067910.3' => 'sly', 'Sopen07g028060' => 'spe', 'Sopen08g021820' => 'spe', 'Sp3g22160' => 'spa', 'Sp6g37140' => 'spa', 'TAR624G0306' => 'tar', 'TAR626G1176' => 'tar', 'TAR633G1402' => 'tar', 'TAR636G2212' => 'tar', 'THA.LOC104804580' => 'tha', 'THA.LOC104816556' => 'tha', 'Thecc.09G115100' => 'tca', 'Thecc.09G115200' => 'tca', 'Thecc.10G023000' => 'tca', 'Thhalv10002594m.g' => 'esa', 'Thhalv10014023m.g' => 'esa', 'TPR.G12393' => 'tpr', 'TPR.G12410' => 'tpr', 'TPR.G30900' => 'tpr', 'TPR.G33100' => 'tpr', 'TWI09G0841' => 'twi', 'TWI63G0194' => 'twi', 'TWI63G1405' => 'twi', 'unitig_46.g18218' => 'ugi', 'unitig_748.g7499' => 'ugi', 'vmacro05449' => 'vma', 'vmacro10059' => 'vma', 'vmacro20672' => 'vma', 'VMungo0647G0800' => 'vmu', 'VMungo1309G1339' => 'vmu', 'VMungo1309G3096' => 'vmu', 'Zm00001eb122290' => 'zma', 'Zm00001eb337020' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D002393', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D002393' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D002393', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '292', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D002393' ) ), 'genes' => array( 'A01p30900' => 'bna', 'A03p02440' => 'bna', 'A03p43620' => 'bna', 'A07p07960' => 'bna', 'Aa31LG11G6770' => 'aar', 'Aa31LG8G11090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2903' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1111' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.362' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.363' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3299' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2876' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.171' => 'aag', 'Actinidia00937' => 'ach', 'Actinidia13423' => 'ach', 'Actinidia13923' => 'ach', 'Actinidia14641' => 'ach', 'Ah.14g081380' => 'amhyb', 'Ah.16g103310' => 'amhyb', 'AL3G39820' => 'aly', 'AL4G17820' => 'aly', 'AL6G15650' => 'aly', 'Aqoxy4G02625' => 'aox', 'Aqoxy7G01831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.JV7TC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV3ZRB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP9K23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQ853S' => 'arhy', 'AT3G24350' => 'ath', 'AT5G05760' => 'ath', 'ATR0121G009' => 'atr', 'ATR0618G234' => 'atr', 'Atru.chr12.6_Atru.chr12.7' => 'acertr', 'Atru.chr7.1293' => 'acertr', 'Atru.chr7.2320' => 'acertr', 'AUR62011032' => 'cqu', 'AUR62012228' => 'cqu', 'AUR62022860' => 'cqu', 'AUR62033405' => 'cqu', 'AUR62039509' => 'cqu', 'BcaB01g05751' => 'bca', 'BcaB01g05963' => 'bca', 'BcaB03g14588' => 'bca', 'BcaB04g20390' => 'bca', 'BcaB06g26621' => 'bca', 'BcaC01g03317' => 'bca', 'BcaC06g35690' => 'bca', 'BcaC08g42817' => 'bca', 'BcaNung07047' => 'bca', 'BolC1t03880H' => 'bol', 'BolC3t12831H' => 'bol', 'BolC3t17633H' => 'bol', 'BolC7t41669H' => 'bol', 'BraA01t03219Z' => 'bra', 'BraA03t09605Z' => 'bra', 'BraA03t13499Z' => 'bra', 'BraA07t28583Z' => 'bra', 'C01p39300' => 'bna', 'C03p02770' => 'bna', 'C03p53730' => 'bna', 'C06p00290' => 'bna', 'C07p12010' => 'bna', 'CAN.G21.21' => 'can', 'CAN.G248.27' => 'can', 'CANSAT25G3278' => 'cansat', 'CANSAT54G1873' => 'cansat', 'CANSAT56G0808' => 'cansat', 'CARHR100450' => 'chi', 'CARHR207510' => 'chi', 'Carub.0003s2469' => 'cru', 'Carub.0006s0466' => 'cru', 'Ca_15693_v3' => 'car', 'Ca_15694_v3' => 'car', 'CBR_g58816' => 'cbr', 'Cc06_g09300' => 'ccan', 'Cc06_g09310' => 'ccan', 'CDE06G2071' => 'cde', 'CDE07G1083' => 'cde', 'Cfa024165' => 'cfa', 'Ciclev10008805m.g' => 'ccl', 'Ciclev10008850m.g' => 'ccl', 'Ciclev10031758m.g' => 'ccl', 'CiPaw.01G297000' => 'cil', 'CiPaw.07G217300' => 'cil', 'CiPaw.08G016000' => 'cil', 'ClCG07G004070' => 'cla', 'ClCG08G012870' => 'cla', 'COL.COLO4_25632' => 'col', 'Cpa.g.sc19.208' => 'cpa', 'Cpa.g.sc23.145' => 'cpa', 'Cre16.g692050' => 'cre', 'CsaV3_5G008990' => 'csa', 'CSS0005321' => 'camsi', 'CSS0014891' => 'camsi', 'CSS0015478' => 'camsi', 'CSS0023863' => 'camsi', 'CSS0039849' => 'camsi', 'Dinv13744' => 'din', 'Dinv20972' => 'din', 'Dinv21033' => 'din', 'Dinv34410' => 'din', 'Dinv35878' => 'din', 'Dinv36602' => 'din', 'Dinv41574' => 'din', 'Duzib114G1007' => 'dzi', 'Duzib150G0091' => 'dzi', 'Duzib168G0800' => 'dzi', 'Duzib168G0991' => 'dzi', 'Duzib187G1129' => 'dzi', 'EL10Ac1g02021' => 'bvu', 'EL10Ac2g04806' => 'bvu', 'EL10Ac8g18546' => 'bvu', 'Eucgr.C02861' => 'egr', 'Eucgr.C02862' => 'egr', 'Eucgr.C02867' => 'egr', 'Eucgr.G03043' => 'egr', 'FAN01G0378' => 'fan', 'FAN03G0360' => 'fan', 'FAN06G1269' => 'fan', 'FAN10G0698' => 'fan', 'FAN15G0251' => 'fan', 'FAN20G1565' => 'fan', 'FAN24G3124' => 'fan', 'FAN27G0742' => 'fan', 'FvH4_2g30200' => 'fve', 'FvH4_7g24180' => 'fve', 'Glyma.02G255700' => 'gma', 'Glyma.04G072700' => 'gma', 'Glyma.04G072800' => 'gma', 'Glyma.06G073900' => 'gma', 'Glyma.06G074000' => 'gma', 'Glyma.U031123' => 'gma', 'Gohir.A05G011000' => 'ghi', 'Gohir.A06G048200' => 'ghi', 'Gohir.A10G233800' => 'ghi', 'Gohir.A13G203800' => 'ghi', 'Gohir.D05G011700' => 'ghi', 'Gohir.D06G048200' => 'ghi', 'Gohir.D10G246100' => 'ghi', 'Gohir.D13G209100' => 'ghi', 'Gorai.009G012000' => 'gra', 'Gorai.010G054000' => 'gra', 'Gorai.011G283800' => 'gra', 'Gorai.013G238200' => 'gra', 'GSVIVG01015436001' => 'vvi', 'GSVIVG01032856001' => 'vvi', 'GSVIVG01035729001' => 'vvi', 'HanXRQChr03g0062001' => 'han', 'HanXRQChr09g0240451' => 'han', 'HanXRQChr10g0317401' => 'han', 'HanXRQChr12g0370551' => 'han', 'Haze_17198' => 'cav', 'Haze_21627' => 'cav', 'Haze_27118' => 'cav', 'Hma1.2p1_0018F.1_g013150' => 'hma', 'Hma1.2p1_0175F.1_g077320' => 'hma', 'HPP92_018348' => 'vpl', 'HPP92_018349' => 'vpl', 'HPP92_018382' => 'vpl', 'Hund09179' => 'sun', 'Hund13839' => 'sun', 'Hund26116' => 'sun', 'Lalb_Chr08g0243771' => 'lal', 'Lalb_Chr11g0064001' => 'lal', 'Lalb_Chr17g0346691' => 'lal', 'Lj1g0015322' => 'lja', 'Lj1g0018321' => 'lja', 'Lj7C641G12' => 'lonja', 'Lj8A70T41' => 'lonja', 'LjContig00357g0020435' => 'lja', 'Lsat_1_v5_gn_5_99821' => 'lsa', 'Lsat_1_v5_gn_7_43121' => 'lsa', 'Lsat_1_v5_gn_8_12440' => 'lsa', 'Lsat_1_v5_gn_8_94641' => 'lsa', 'Manes.07G127200' => 'mes', 'Manes.16G064900' => 'mes', 'Mapoly0036s0047' => 'mpo', 'MBI01_g10037_MAGBIO' => 'mbi', 'MBI04_g20760_MAGBIO' => 'mbi', 'MBI14_g09424_MAGBIO' => 'mbi', 'MBI18_g28884_MAGBIO' => 'mbi', 'MBI18_g36458_MAGBIO' => 'mbi', 'MCO02G165' => 'mco', 'MD01G1149000' => 'mdo', 'MD08G1135700' => 'mdo', 'MD15G1114700' => 'mdo', 'MD15G1114800' => 'mdo', 'MD15G1190200' => 'mdo', 'Medtr3g108160' => 'mtr', 'Medtr5g093600' => 'mtr', 'MELO3C011211.2' => 'cme', 'MELO3C025172.2' => 'cme', 'Migut.A00270' => 'egut', 'Migut.E01503' => 'egut', 'Migut.F01414' => 'egut', 'MSTRG.14003' => 'ama', 'MSTRG.25877' => 'ama', 'MSTRG.8319' => 'ama', 'Nitab4.5_0000125g0090' => 'nta', 'Nitab4.5_0000802g0170' => 'nta', 'Nitab4.5_0001346g0010' => 'nta', 'Nitab4.5_0011857g0010' => 'nta', 'Nn2g11427' => 'nnu', 'Nn2g11829' => 'nnu', 'Nn8g39268' => 'nnu', 'Oeu027166.1' => 'oeu', 'Oeu045174.1' => 'oeu', 'Os01g0179200' => 'osa', 'Peaxi162Scf00105g01218' => 'pax', 'Peaxi162Scf01313g00119' => 'pax', 'PGR044G1448' => 'pgr', 'PGSC0003DMG400004557' => 'stu', 'PGSC0003DMG400014503' => 'stu', 'PGSC0003DMG400018386' => 'stu', 'Phvul.008G225400' => 'pvu', 'Phvul.009G098500' => 'pvu', 'Phvul.009G098600' => 'pvu', 'Potri.006G157000' => 'ptr', 'Potri.010G191100' => 'ptr', 'Potri.018G072400' => 'ptr', 'Pp3c13_17240' => 'ppa', 'Pp3c3_23960' => 'ppa', 'Prupe.1G466200' => 'ppe', 'Prupe.2G247700' => 'ppe', 'Prupe.7G226900' => 'ppe', 'Psat2g012720' => 'psa', 'Psat5g026920' => 'psa', 'PSO063G6573' => 'pso', 'PSO339G0485' => 'pso', 'PSO782G3325' => 'pso', 'PSO801G0669' => 'pso', 'QL12p031209' => 'qlo', 'RcHm_v2.0_Chr1g0369761' => 'rch', 'RcHm_v2.0_Chr6g0312681' => 'rch', 'Rhsim01G0091400' => 'rsi', 'Rhsim09G0173400' => 'rsi', 'Sabra06G0123200' => 'sbr', 'Sabra10G0147100' => 'sbr', 'Sabra18G0064200' => 'sbr', 'SalBow4G1136' => 'sbo', 'SalBow6G5206' => 'sbo', 'SalBow8G4140' => 'sbo', 'Sc11g0007210' => 'sci', 'Sc18g0001010' => 'sci', 'Sed0005671' => 'sed', 'Sed0013961' => 'sed', 'Sed0020602' => 'sed', 'Sed0023487' => 'sed', 'SEGI_03224' => 'sgi', 'SEGI_04853' => 'sgi', 'SEGI_13325' => 'sgi', 'SEGI_15123' => 'sgi', 'SEGI_22729' => 'sgi', 'SEGI_22935' => 'sgi', 'SGA_v2.0_scaffold163G38094' => 'sas', 'SGA_v2.0_scaffold169G38634' => 'sas', 'SMO203G0172' => 'smo', 'SMO357G0001' => 'smo', 'Solyc07g054140.3' => 'sly', 'Solyc08g067910.3' => 'sly', 'Sopen07g028060' => 'spe', 'Sopen08g021820' => 'spe', 'Sp3g22160' => 'spa', 'Sp6g37140' => 'spa', 'TAR624G0306' => 'tar', 'TAR626G1176' => 'tar', 'TAR633G1402' => 'tar', 'TAR636G2212' => 'tar', 'THA.LOC104804580' => 'tha', 'THA.LOC104816556' => 'tha', 'Thecc.09G115100' => 'tca', 'Thecc.09G115200' => 'tca', 'Thecc.10G023000' => 'tca', 'Thhalv10002594m.g' => 'esa', 'Thhalv10014023m.g' => 'esa', 'TPR.G12393' => 'tpr', 'TPR.G12410' => 'tpr', 'TPR.G30900' => 'tpr', 'TPR.G33100' => 'tpr', 'TWI09G0841' => 'twi', 'TWI63G0194' => 'twi', 'TWI63G1405' => 'twi', 'unitig_46.g18218' => 'ugi', 'unitig_748.g7499' => 'ugi', 'vmacro05449' => 'vma', 'vmacro10059' => 'vma', 'vmacro20672' => 'vma', 'VMungo0647G0800' => 'vmu', 'VMungo1309G1339' => 'vmu', 'VMungo1309G3096' => 'vmu', 'Zm00001eb122290' => 'zma', 'Zm00001eb337020' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D002393' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D002393' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D002393' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D002393' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151