Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D001520', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '394', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p27110' => 'bna', 'A02p10070' => 'bna', 'A03p14440' => 'bna', 'A09p19350' => 'bna', 'A10p01930' => 'bna', 'A10p11990' => 'bna', 'Aa31LG1G9180' => 'aar', 'Aa31LG1G9190' => 'aar', 'Aa31LG2G12090' => 'aar', 'Aa31LG3G10640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2865' => 'aag', 'Actinidia05734' => 'ach', 'Actinidia21084' => 'ach', 'Actinidia24864' => 'ach', 'Actinidia30897' => 'ach', 'Actinidia35314' => 'ach', 'Actinidia38627' => 'ach', 'Ah.04g159870' => 'amhyb', 'Ah.06g183070' => 'amhyb', 'Ah.06g190270' => 'amhyb', 'AL1G12910' => 'aly', 'AL1G65130' => 'aly', 'AL8G30150' => 'aly', 'Aqoxy2G03172' => 'aox', 'Aqoxy4G02087' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AME8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2FWCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EM1RFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP0QNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9BD7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8YXAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6HGF1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0EQV8' => 'arhy', 'AT1G03380' => 'ath', 'AT1G54710' => 'ath', 'AT5G54730' => 'ath', 'ATR0005G001' => 'atr', 'ATR0580G230' => 'atr', 'ATR0618G181' => 'atr', 'ATR1088G016' => 'atr', 'Atru.chr2.3205' => 'acertr', 'Atru.chr2.524' => 'acertr', 'Atru.chr5.1315' => 'acertr', 'Atru.chr5.1316' => 'acertr', 'Atru.chr5.1317' => 'acertr', 'AUR62000848' => 'cqu', 'AUR62005127' => 'cqu', 'AUR62015639' => 'cqu', 'AUR62029232' => 'cqu', 'BcaB01g04322' => 'bca', 'BcaB04g20140' => 'bca', 'BcaB05g22155' => 'bca', 'BcaB07g31100' => 'bca', 'BcaB08g35831' => 'bca', 'BcaC01g06324' => 'bca', 'BcaC03g14293' => 'bca', 'BcaC04g20308' => 'bca', 'BcaC04g22028' => 'bca', 'BcaC05g24533' => 'bca', 'BcaC09g49609' => 'bca', 'BolC1t03423H' => 'bol', 'BolC2t07777H' => 'bol', 'BolC3t14101H' => 'bol', 'BolC5t28968H' => 'bol', 'BolC9t55356H' => 'bol', 'BolC9t57387H' => 'bol', 'BraA01t02845Z' => 'bra', 'BraA02t06076Z' => 'bra', 'BraA03t10740Z' => 'bra', 'BraA09t37552Z' => 'bra', 'BraA10t42466Z' => 'bra', 'BraA10t43301Z' => 'bra', 'C01p34530' => 'bna', 'C02p16710' => 'bna', 'C03p16810' => 'bna', 'C03p16830' => 'bna', 'C05p01870' => 'bna', 'C09p24390' => 'bna', 'C09p45150' => 'bna', 'CAN.G134.233' => 'can', 'CAN.G337.152' => 'can', 'CANSAT11G2547' => 'cansat', 'CANSAT54G2580' => 'cansat', 'CARHR002760' => 'chi', 'CARHR055840' => 'chi', 'CARHR268040' => 'chi', 'Carub.0001s0251' => 'cru', 'Carub.0002s0889' => 'cru', 'Carub.0008s1497' => 'cru', 'Ca_01755_v3' => 'car', 'Ca_01760_v3' => 'car', 'Ca_01761_v3' => 'car', 'Ca_10081_v3' => 'car', 'Ca_10389_v3' => 'car', 'CBR_g6304' => 'cbr', 'Cc02_g32430' => 'ccan', 'Cc05_g13210' => 'ccan', 'CDE02G0084' => 'cde', 'CDE05G0276' => 'cde', 'CDE05G2341' => 'cde', 'CDE11G0177' => 'cde', 'Cfa006525' => 'cfa', 'Ciclev10000138m.g' => 'ccl', 'Ciclev10007389m.g' => 'ccl', 'Ciclev10018690m.g' => 'ccl', 'CiPaw.07G012900' => 'cil', 'CiPaw.07G097800' => 'cil', 'CiPaw.08G101200' => 'cil', 'CiPaw.08G167900' => 'cil', 'CiPaw.11G183400' => 'cil', 'CiPaw.12G126300' => 'cil', 'ClCG03G016690' => 'cla', 'ClCG05G014790' => 'cla', 'ClCG09G006690' => 'cla', 'COL.COLO4_09156' => 'col', 'COL.COLO4_09563' => 'col', 'COL.COLO4_13556' => 'col', 'Cpa.g.sc84.121' => 'cpa', 'Cpa.g.sc9.141' => 'cpa', 'Cpa.g.sc97.73' => 'cpa', 'CsaV3_1G039320' => 'csa', 'CsaV3_3G022880' => 'csa', 'CsaV3_7G028450' => 'csa', 'CsaV3_UNG229010' => 'csa', 'CsaV3_UNG229020' => 'csa', 'CSS0010177' => 'camsi', 'CSS0012744' => 'camsi', 'CSS0016690' => 'camsi', 'CSS0021708' => 'camsi', 'CSS0026650' => 'camsi', 'CSS0039456' => 'camsi', 'CSS0040351' => 'camsi', 'CSS0042691' => 'camsi', 'DCAR_000309' => 'dca', 'DCAR_001934' => 'dca', 'DCAR_022522' => 'dca', 'DCAR_029450' => 'dca', 'Dinv03937' => 'din', 'Dinv11275' => 'din', 'Dinv22308' => 'din', 'Dinv22920' => 'din', 'Dinv32974' => 'din', 'Duzib138G1839' => 'dzi', 'Duzib177G0168' => 'dzi', 'Duzib211G0097' => 'dzi', 'Duzib213G0680' => 'dzi', 'Duzib268G1066' => 'dzi', 'ECA233G6059' => 'eca', 'ECA246G1276' => 'eca', 'ECA246G3242' => 'eca', 'ECA247G1588' => 'eca', 'EL10Ac4g07983' => 'bvu', 'EL10Ac4g09289' => 'bvu', 'Eucgr.B02027' => 'egr', 'Eucgr.F03423' => 'egr', 'Eucgr.H01605' => 'egr', 'FAN02G2273' => 'fan', 'FAN02G3686' => 'fan', 'FAN05G1651' => 'fan', 'FAN05G2935' => 'fan', 'FAN09G1386' => 'fan', 'FAN11G3615' => 'fan', 'FAN14G0612' => 'fan', 'FAN15G0286' => 'fan', 'FAN15G3740' => 'fan', 'FAN16G2991' => 'fan', 'FAN20G0526' => 'fan', 'FAN21G0746' => 'fan', 'FAN21G1944' => 'fan', 'FAN24G0632' => 'fan', 'FAN25G3568' => 'fan', 'FAN27G1000' => 'fan', 'FvH4_2g24310' => 'fve', 'FvH4_3g21770' => 'fve', 'FvH4_6g04980' => 'fve', 'Glyma.03G148700' => 'gma', 'Glyma.06G267000' => 'gma', 'Glyma.10G157700' => 'gma', 'Glyma.12G136000' => 'gma', 'Glyma.12G214600' => 'gma', 'Glyma.13G287000' => 'gma', 'Glyma.19G152000' => 'gma', 'Glyma.20G230851' => 'gma', 'Glyma.20G230900' => 'gma', 'Gohir.A01G074300' => 'ghi', 'Gohir.A11G261000' => 'ghi', 'Gohir.A11G280400' => 'ghi', 'Gohir.A12G007200' => 'ghi', 'Gohir.A13G172700' => 'ghi', 'Gohir.D01G060800' => 'ghi', 'Gohir.D11G271300' => 'ghi', 'Gohir.D11G290700' => 'ghi', 'Gohir.D12G006600' => 'ghi', 'Gohir.D13G178500' => 'ghi', 'Gorai.002G082200' => 'gra', 'Gorai.007G291800' => 'gra', 'Gorai.007G314600' => 'gra', 'Gorai.008G006700' => 'gra', 'Gorai.013G203700' => 'gra', 'GSVIVG01011044001' => 'vvi', 'GSVIVG01014601001' => 'vvi', 'GSVIVG01014602001' => 'vvi', 'GSVIVG01022020001' => 'vvi', 'HanXRQChr05g0159231' => 'han', 'HanXRQChr08g0233951' => 'han', 'HanXRQChr10g0283131' => 'han', 'HanXRQChr16g0512331' => 'han', 'Haze_04260' => 'cav', 'Haze_04791' => 'cav', 'Haze_09606' => 'cav', 'Haze_27762' => 'cav', 'Hma1.2p1_0257F.1_g104010' => 'hma', 'Hma1.2p1_0538F.1_g174370' => 'hma', 'HPP92_011812' => 'vpl', 'HPP92_015951' => 'vpl', 'Hund02138' => 'sun', 'Hund07027' => 'sun', 'Hund21674' => 'sun', 'Lalb_Chr03g0030151' => 'lal', 'Lalb_Chr03g0030161' => 'lal', 'Lalb_Chr06g0163231' => 'lal', 'Lalb_Chr06g0167841' => 'lal', 'Lalb_Chr14g0366091' => 'lal', 'Lalb_Chr19g0134731' => 'lal', 'Lalb_Chr22g0357051' => 'lal', 'Lj1C41T12' => 'lonja', 'Lj1C863G20' => 'lonja', 'Lj1g0020362' => 'lja', 'Lj3g0015626' => 'lja', 'Lj5g0002193' => 'lja', 'Lj8A165T111' => 'lonja', 'Lj9C678G11' => 'lonja', 'Lsat_1_v5_gn_5_37921' => 'lsa', 'Lsat_1_v5_gn_5_39040' => 'lsa', 'Lsat_1_v5_gn_5_5681' => 'lsa', 'Lsat_1_v5_gn_9_1741' => 'lsa', 'Manes.01G211900' => 'mes', 'Manes.03G122700' => 'mes', 'Manes.08G124500' => 'mes', 'Manes.09G161900' => 'mes', 'Manes.15G076800' => 'mes', 'Mapoly0006s0048' => 'mpo', 'MBI02_g18407_MAGBIO' => 'mbi', 'MBI18_g24130_MAGBIO' => 'mbi', 'MBI18_g28250_MAGBIO' => 'mbi', 'MBI19_g13520_MAGBIO' => 'mbi', 'MD01G1018400' => 'mdo', 'MD03G1089400' => 'mdo', 'MD03G1212200' => 'mdo', 'MD03G1272800' => 'mdo', 'MD04G1212000' => 'mdo', 'MD11G1227300' => 'mdo', 'MD11G1293800' => 'mdo', 'MD12G1226700' => 'mdo', 'Medtr1g082300' => 'mtr', 'Medtr1g089110' => 'mtr', 'Medtr2g082770' => 'mtr', 'MELO3C015358.2' => 'cme', 'MELO3C015877.2' => 'cme', 'MELO3C018126.2' => 'cme', 'Migut.D00247' => 'egut', 'Migut.H01859' => 'egut', 'Migut.N02132' => 'egut', 'MSTRG.12955' => 'ama', 'MSTRG.15168' => 'ama', 'MSTRG.17430' => 'ama', 'MSTRG.18204' => 'ama', 'MSTRG.21589' => 'ama', 'Nitab4.5_0000092g0040' => 'nta', 'Nitab4.5_0000245g0290' => 'nta', 'Nitab4.5_0000397g0080' => 'nta', 'Nitab4.5_0000749g0010' => 'nta', 'Nitab4.5_0001903g0120' => 'nta', 'Nitab4.5_0002238g0080' => 'nta', 'Nn1g03665' => 'nnu', 'Nn1g06996' => 'nnu', 'Nn3g21207' => 'nnu', 'Nn4g26109' => 'nnu', 'Oeu001450.1' => 'oeu', 'Oeu007627.1' => 'oeu', 'Oeu013855.1' => 'oeu', 'Oeu042914.1' => 'oeu', 'Oeu062620.4' => 'oeu', 'Os01g0786900' => 'osa', 'Os05g0405900' => 'osa', 'Peaxi162Scf00434g00727' => 'pax', 'Peaxi162Scf01086g00110' => 'pax', 'PGR031G2196' => 'pgr', 'PGR083G0549' => 'pgr', 'PGR119G2390' => 'pgr', 'PGSC0003DMG400019227' => 'stu', 'PGSC0003DMG400025620' => 'stu', 'PGSC0003DMG400028594' => 'stu', 'Phvul.001G146700' => 'pvu', 'Phvul.005G091300' => 'pvu', 'Phvul.007G183100' => 'pvu', 'Phvul.011G140900' => 'pvu', 'Potri.001G417000' => 'ptr', 'Potri.005G040300' => 'ptr', 'Potri.011G132700' => 'ptr', 'Potri.013G028200' => 'ptr', 'Pp3c20_18810' => 'ppa', 'Pp3c23_8190' => 'ppa', 'Pp3c24_5800' => 'ppa', 'Pp3c8_5760' => 'ppa', 'Prupe.4G201900' => 'ppe', 'Prupe.6G332400' => 'ppe', 'Prupe.8G249300' => 'ppe', 'Psat5g249880' => 'psa', 'Psat6g148560' => 'psa', 'Psat6g169560' => 'psa', 'PSO017G6374' => 'pso', 'PSO170G4830' => 'pso', 'PSO210G2393' => 'pso', 'PSO541G0622' => 'pso', 'PSO675G0598' => 'pso', 'PSO675G2225' => 'pso', 'PSO832G0916' => 'pso', 'QL03p003637' => 'qlo', 'QL08p013394' => 'qlo', 'QL08p013554' => 'qlo', 'QL12p023119' => 'qlo', 'RcHm_v2.0_Chr3g0453491' => 'rch', 'RcHm_v2.0_Chr5g0037241' => 'rch', 'RcHm_v2.0_Chr6g0292181' => 'rch', 'Rhsim01G0278400' => 'rsi', 'Rhsim07G0178500' => 'rsi', 'RhsimUnG0253300' => 'rsi', 'Sabra05G0039300' => 'sbr', 'Sabra11G0119500' => 'sbr', 'Sabra13G0028700' => 'sbr', 'Sabra16G0283400' => 'sbr', 'SalBow3G0971' => 'sbo', 'SalBow7G2055' => 'sbo', 'Sc03g0009120' => 'sci', 'Sc09g0003620' => 'sci', 'Sed0016223' => 'sed', 'Sed0017837' => 'sed', 'Sed0020701' => 'sed', 'Sed0024597' => 'sed', 'Sed0024628' => 'sed', 'SEGI_02236' => 'sgi', 'SEGI_08841' => 'sgi', 'SEGI_29639' => 'sgi', 'SGA_v2.0_scaffold11G05778' => 'sas', 'SGA_v2.0_scaffold1G00433' => 'sas', 'SHI18222' => 'shi', 'SMO146G0123' => 'smo', 'Solyc01g098430.3' => 'sly', 'Solyc07g064060.3' => 'sly', 'Solyc12g005230.3' => 'sly', 'Sopen01g041990' => 'spe', 'Sopen07g032200' => 'spe', 'Sopen12g001220' => 'spe', 'Sp1g02380' => 'spa', 'Sp6g16670' => 'spa', 'SpUN0002_0210' => 'spa', 'TAR362G0210' => 'tar', 'TAR365G1201' => 'tar', 'TAR624G0744' => 'tar', 'TAR626G1457' => 'tar', 'TAR636G1465' => 'tar', 'THA.LOC104801208' => 'tha', 'THA.LOC104805847' => 'tha', 'THA.LOC104813412' => 'tha', 'THA.LOC104821048' => 'tha', 'Thecc.01G286900' => 'tca', 'Thecc.05G298200' => 'tca', 'Thecc.07G054500' => 'tca', 'Thhalv10006706m.g' => 'esa', 'Thhalv10012811m.g' => 'esa', 'Thhalv10023243m.g' => 'esa', 'TPR.G16922' => 'tpr', 'TPR.G2713' => 'tpr', 'TPR.G36798' => 'tpr', 'TWI12G1213' => 'twi', 'TWI36G1034' => 'twi', 'TWI38G1832' => 'twi', 'TWI39G1140' => 'twi', 'unitig_0.g1189' => 'ugi', 'unitig_0.g638' => 'ugi', 'unitig_26.g9970' => 'ugi', 'unitig_52.g17358' => 'ugi', 'unitig_61.g26320' => 'ugi', 'vmacro05043' => 'vma', 'vmacro09748' => 'vma', 'vmacro14950' => 'vma', 'VMungo0720G2593' => 'vmu', 'VMungo1080G1382' => 'vmu', 'VMungo1127G1627' => 'vmu', 'VMungo1383G3368' => 'vmu', 'Zm00001eb151200' => 'zma', 'Zm00001eb287690' => 'zma', 'Zm00001eb349780' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D001520', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D001520' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D001520', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '394', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001520' ) ), 'genes' => array( 'A01p27110' => 'bna', 'A02p10070' => 'bna', 'A03p14440' => 'bna', 'A09p19350' => 'bna', 'A10p01930' => 'bna', 'A10p11990' => 'bna', 'Aa31LG1G9180' => 'aar', 'Aa31LG1G9190' => 'aar', 'Aa31LG2G12090' => 'aar', 'Aa31LG3G10640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2865' => 'aag', 'Actinidia05734' => 'ach', 'Actinidia21084' => 'ach', 'Actinidia24864' => 'ach', 'Actinidia30897' => 'ach', 'Actinidia35314' => 'ach', 'Actinidia38627' => 'ach', 'Ah.04g159870' => 'amhyb', 'Ah.06g183070' => 'amhyb', 'Ah.06g190270' => 'amhyb', 'AL1G12910' => 'aly', 'AL1G65130' => 'aly', 'AL8G30150' => 'aly', 'Aqoxy2G03172' => 'aox', 'Aqoxy4G02087' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AME8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2FWCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EM1RFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP0QNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9BD7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8YXAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6HGF1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0EQV8' => 'arhy', 'AT1G03380' => 'ath', 'AT1G54710' => 'ath', 'AT5G54730' => 'ath', 'ATR0005G001' => 'atr', 'ATR0580G230' => 'atr', 'ATR0618G181' => 'atr', 'ATR1088G016' => 'atr', 'Atru.chr2.3205' => 'acertr', 'Atru.chr2.524' => 'acertr', 'Atru.chr5.1315' => 'acertr', 'Atru.chr5.1316' => 'acertr', 'Atru.chr5.1317' => 'acertr', 'AUR62000848' => 'cqu', 'AUR62005127' => 'cqu', 'AUR62015639' => 'cqu', 'AUR62029232' => 'cqu', 'BcaB01g04322' => 'bca', 'BcaB04g20140' => 'bca', 'BcaB05g22155' => 'bca', 'BcaB07g31100' => 'bca', 'BcaB08g35831' => 'bca', 'BcaC01g06324' => 'bca', 'BcaC03g14293' => 'bca', 'BcaC04g20308' => 'bca', 'BcaC04g22028' => 'bca', 'BcaC05g24533' => 'bca', 'BcaC09g49609' => 'bca', 'BolC1t03423H' => 'bol', 'BolC2t07777H' => 'bol', 'BolC3t14101H' => 'bol', 'BolC5t28968H' => 'bol', 'BolC9t55356H' => 'bol', 'BolC9t57387H' => 'bol', 'BraA01t02845Z' => 'bra', 'BraA02t06076Z' => 'bra', 'BraA03t10740Z' => 'bra', 'BraA09t37552Z' => 'bra', 'BraA10t42466Z' => 'bra', 'BraA10t43301Z' => 'bra', 'C01p34530' => 'bna', 'C02p16710' => 'bna', 'C03p16810' => 'bna', 'C03p16830' => 'bna', 'C05p01870' => 'bna', 'C09p24390' => 'bna', 'C09p45150' => 'bna', 'CAN.G134.233' => 'can', 'CAN.G337.152' => 'can', 'CANSAT11G2547' => 'cansat', 'CANSAT54G2580' => 'cansat', 'CARHR002760' => 'chi', 'CARHR055840' => 'chi', 'CARHR268040' => 'chi', 'Carub.0001s0251' => 'cru', 'Carub.0002s0889' => 'cru', 'Carub.0008s1497' => 'cru', 'Ca_01755_v3' => 'car', 'Ca_01760_v3' => 'car', 'Ca_01761_v3' => 'car', 'Ca_10081_v3' => 'car', 'Ca_10389_v3' => 'car', 'CBR_g6304' => 'cbr', 'Cc02_g32430' => 'ccan', 'Cc05_g13210' => 'ccan', 'CDE02G0084' => 'cde', 'CDE05G0276' => 'cde', 'CDE05G2341' => 'cde', 'CDE11G0177' => 'cde', 'Cfa006525' => 'cfa', 'Ciclev10000138m.g' => 'ccl', 'Ciclev10007389m.g' => 'ccl', 'Ciclev10018690m.g' => 'ccl', 'CiPaw.07G012900' => 'cil', 'CiPaw.07G097800' => 'cil', 'CiPaw.08G101200' => 'cil', 'CiPaw.08G167900' => 'cil', 'CiPaw.11G183400' => 'cil', 'CiPaw.12G126300' => 'cil', 'ClCG03G016690' => 'cla', 'ClCG05G014790' => 'cla', 'ClCG09G006690' => 'cla', 'COL.COLO4_09156' => 'col', 'COL.COLO4_09563' => 'col', 'COL.COLO4_13556' => 'col', 'Cpa.g.sc84.121' => 'cpa', 'Cpa.g.sc9.141' => 'cpa', 'Cpa.g.sc97.73' => 'cpa', 'CsaV3_1G039320' => 'csa', 'CsaV3_3G022880' => 'csa', 'CsaV3_7G028450' => 'csa', 'CsaV3_UNG229010' => 'csa', 'CsaV3_UNG229020' => 'csa', 'CSS0010177' => 'camsi', 'CSS0012744' => 'camsi', 'CSS0016690' => 'camsi', 'CSS0021708' => 'camsi', 'CSS0026650' => 'camsi', 'CSS0039456' => 'camsi', 'CSS0040351' => 'camsi', 'CSS0042691' => 'camsi', 'DCAR_000309' => 'dca', 'DCAR_001934' => 'dca', 'DCAR_022522' => 'dca', 'DCAR_029450' => 'dca', 'Dinv03937' => 'din', 'Dinv11275' => 'din', 'Dinv22308' => 'din', 'Dinv22920' => 'din', 'Dinv32974' => 'din', 'Duzib138G1839' => 'dzi', 'Duzib177G0168' => 'dzi', 'Duzib211G0097' => 'dzi', 'Duzib213G0680' => 'dzi', 'Duzib268G1066' => 'dzi', 'ECA233G6059' => 'eca', 'ECA246G1276' => 'eca', 'ECA246G3242' => 'eca', 'ECA247G1588' => 'eca', 'EL10Ac4g07983' => 'bvu', 'EL10Ac4g09289' => 'bvu', 'Eucgr.B02027' => 'egr', 'Eucgr.F03423' => 'egr', 'Eucgr.H01605' => 'egr', 'FAN02G2273' => 'fan', 'FAN02G3686' => 'fan', 'FAN05G1651' => 'fan', 'FAN05G2935' => 'fan', 'FAN09G1386' => 'fan', 'FAN11G3615' => 'fan', 'FAN14G0612' => 'fan', 'FAN15G0286' => 'fan', 'FAN15G3740' => 'fan', 'FAN16G2991' => 'fan', 'FAN20G0526' => 'fan', 'FAN21G0746' => 'fan', 'FAN21G1944' => 'fan', 'FAN24G0632' => 'fan', 'FAN25G3568' => 'fan', 'FAN27G1000' => 'fan', 'FvH4_2g24310' => 'fve', 'FvH4_3g21770' => 'fve', 'FvH4_6g04980' => 'fve', 'Glyma.03G148700' => 'gma', 'Glyma.06G267000' => 'gma', 'Glyma.10G157700' => 'gma', 'Glyma.12G136000' => 'gma', 'Glyma.12G214600' => 'gma', 'Glyma.13G287000' => 'gma', 'Glyma.19G152000' => 'gma', 'Glyma.20G230851' => 'gma', 'Glyma.20G230900' => 'gma', 'Gohir.A01G074300' => 'ghi', 'Gohir.A11G261000' => 'ghi', 'Gohir.A11G280400' => 'ghi', 'Gohir.A12G007200' => 'ghi', 'Gohir.A13G172700' => 'ghi', 'Gohir.D01G060800' => 'ghi', 'Gohir.D11G271300' => 'ghi', 'Gohir.D11G290700' => 'ghi', 'Gohir.D12G006600' => 'ghi', 'Gohir.D13G178500' => 'ghi', 'Gorai.002G082200' => 'gra', 'Gorai.007G291800' => 'gra', 'Gorai.007G314600' => 'gra', 'Gorai.008G006700' => 'gra', 'Gorai.013G203700' => 'gra', 'GSVIVG01011044001' => 'vvi', 'GSVIVG01014601001' => 'vvi', 'GSVIVG01014602001' => 'vvi', 'GSVIVG01022020001' => 'vvi', 'HanXRQChr05g0159231' => 'han', 'HanXRQChr08g0233951' => 'han', 'HanXRQChr10g0283131' => 'han', 'HanXRQChr16g0512331' => 'han', 'Haze_04260' => 'cav', 'Haze_04791' => 'cav', 'Haze_09606' => 'cav', 'Haze_27762' => 'cav', 'Hma1.2p1_0257F.1_g104010' => 'hma', 'Hma1.2p1_0538F.1_g174370' => 'hma', 'HPP92_011812' => 'vpl', 'HPP92_015951' => 'vpl', 'Hund02138' => 'sun', 'Hund07027' => 'sun', 'Hund21674' => 'sun', 'Lalb_Chr03g0030151' => 'lal', 'Lalb_Chr03g0030161' => 'lal', 'Lalb_Chr06g0163231' => 'lal', 'Lalb_Chr06g0167841' => 'lal', 'Lalb_Chr14g0366091' => 'lal', 'Lalb_Chr19g0134731' => 'lal', 'Lalb_Chr22g0357051' => 'lal', 'Lj1C41T12' => 'lonja', 'Lj1C863G20' => 'lonja', 'Lj1g0020362' => 'lja', 'Lj3g0015626' => 'lja', 'Lj5g0002193' => 'lja', 'Lj8A165T111' => 'lonja', 'Lj9C678G11' => 'lonja', 'Lsat_1_v5_gn_5_37921' => 'lsa', 'Lsat_1_v5_gn_5_39040' => 'lsa', 'Lsat_1_v5_gn_5_5681' => 'lsa', 'Lsat_1_v5_gn_9_1741' => 'lsa', 'Manes.01G211900' => 'mes', 'Manes.03G122700' => 'mes', 'Manes.08G124500' => 'mes', 'Manes.09G161900' => 'mes', 'Manes.15G076800' => 'mes', 'Mapoly0006s0048' => 'mpo', 'MBI02_g18407_MAGBIO' => 'mbi', 'MBI18_g24130_MAGBIO' => 'mbi', 'MBI18_g28250_MAGBIO' => 'mbi', 'MBI19_g13520_MAGBIO' => 'mbi', 'MD01G1018400' => 'mdo', 'MD03G1089400' => 'mdo', 'MD03G1212200' => 'mdo', 'MD03G1272800' => 'mdo', 'MD04G1212000' => 'mdo', 'MD11G1227300' => 'mdo', 'MD11G1293800' => 'mdo', 'MD12G1226700' => 'mdo', 'Medtr1g082300' => 'mtr', 'Medtr1g089110' => 'mtr', 'Medtr2g082770' => 'mtr', 'MELO3C015358.2' => 'cme', 'MELO3C015877.2' => 'cme', 'MELO3C018126.2' => 'cme', 'Migut.D00247' => 'egut', 'Migut.H01859' => 'egut', 'Migut.N02132' => 'egut', 'MSTRG.12955' => 'ama', 'MSTRG.15168' => 'ama', 'MSTRG.17430' => 'ama', 'MSTRG.18204' => 'ama', 'MSTRG.21589' => 'ama', 'Nitab4.5_0000092g0040' => 'nta', 'Nitab4.5_0000245g0290' => 'nta', 'Nitab4.5_0000397g0080' => 'nta', 'Nitab4.5_0000749g0010' => 'nta', 'Nitab4.5_0001903g0120' => 'nta', 'Nitab4.5_0002238g0080' => 'nta', 'Nn1g03665' => 'nnu', 'Nn1g06996' => 'nnu', 'Nn3g21207' => 'nnu', 'Nn4g26109' => 'nnu', 'Oeu001450.1' => 'oeu', 'Oeu007627.1' => 'oeu', 'Oeu013855.1' => 'oeu', 'Oeu042914.1' => 'oeu', 'Oeu062620.4' => 'oeu', 'Os01g0786900' => 'osa', 'Os05g0405900' => 'osa', 'Peaxi162Scf00434g00727' => 'pax', 'Peaxi162Scf01086g00110' => 'pax', 'PGR031G2196' => 'pgr', 'PGR083G0549' => 'pgr', 'PGR119G2390' => 'pgr', 'PGSC0003DMG400019227' => 'stu', 'PGSC0003DMG400025620' => 'stu', 'PGSC0003DMG400028594' => 'stu', 'Phvul.001G146700' => 'pvu', 'Phvul.005G091300' => 'pvu', 'Phvul.007G183100' => 'pvu', 'Phvul.011G140900' => 'pvu', 'Potri.001G417000' => 'ptr', 'Potri.005G040300' => 'ptr', 'Potri.011G132700' => 'ptr', 'Potri.013G028200' => 'ptr', 'Pp3c20_18810' => 'ppa', 'Pp3c23_8190' => 'ppa', 'Pp3c24_5800' => 'ppa', 'Pp3c8_5760' => 'ppa', 'Prupe.4G201900' => 'ppe', 'Prupe.6G332400' => 'ppe', 'Prupe.8G249300' => 'ppe', 'Psat5g249880' => 'psa', 'Psat6g148560' => 'psa', 'Psat6g169560' => 'psa', 'PSO017G6374' => 'pso', 'PSO170G4830' => 'pso', 'PSO210G2393' => 'pso', 'PSO541G0622' => 'pso', 'PSO675G0598' => 'pso', 'PSO675G2225' => 'pso', 'PSO832G0916' => 'pso', 'QL03p003637' => 'qlo', 'QL08p013394' => 'qlo', 'QL08p013554' => 'qlo', 'QL12p023119' => 'qlo', 'RcHm_v2.0_Chr3g0453491' => 'rch', 'RcHm_v2.0_Chr5g0037241' => 'rch', 'RcHm_v2.0_Chr6g0292181' => 'rch', 'Rhsim01G0278400' => 'rsi', 'Rhsim07G0178500' => 'rsi', 'RhsimUnG0253300' => 'rsi', 'Sabra05G0039300' => 'sbr', 'Sabra11G0119500' => 'sbr', 'Sabra13G0028700' => 'sbr', 'Sabra16G0283400' => 'sbr', 'SalBow3G0971' => 'sbo', 'SalBow7G2055' => 'sbo', 'Sc03g0009120' => 'sci', 'Sc09g0003620' => 'sci', 'Sed0016223' => 'sed', 'Sed0017837' => 'sed', 'Sed0020701' => 'sed', 'Sed0024597' => 'sed', 'Sed0024628' => 'sed', 'SEGI_02236' => 'sgi', 'SEGI_08841' => 'sgi', 'SEGI_29639' => 'sgi', 'SGA_v2.0_scaffold11G05778' => 'sas', 'SGA_v2.0_scaffold1G00433' => 'sas', 'SHI18222' => 'shi', 'SMO146G0123' => 'smo', 'Solyc01g098430.3' => 'sly', 'Solyc07g064060.3' => 'sly', 'Solyc12g005230.3' => 'sly', 'Sopen01g041990' => 'spe', 'Sopen07g032200' => 'spe', 'Sopen12g001220' => 'spe', 'Sp1g02380' => 'spa', 'Sp6g16670' => 'spa', 'SpUN0002_0210' => 'spa', 'TAR362G0210' => 'tar', 'TAR365G1201' => 'tar', 'TAR624G0744' => 'tar', 'TAR626G1457' => 'tar', 'TAR636G1465' => 'tar', 'THA.LOC104801208' => 'tha', 'THA.LOC104805847' => 'tha', 'THA.LOC104813412' => 'tha', 'THA.LOC104821048' => 'tha', 'Thecc.01G286900' => 'tca', 'Thecc.05G298200' => 'tca', 'Thecc.07G054500' => 'tca', 'Thhalv10006706m.g' => 'esa', 'Thhalv10012811m.g' => 'esa', 'Thhalv10023243m.g' => 'esa', 'TPR.G16922' => 'tpr', 'TPR.G2713' => 'tpr', 'TPR.G36798' => 'tpr', 'TWI12G1213' => 'twi', 'TWI36G1034' => 'twi', 'TWI38G1832' => 'twi', 'TWI39G1140' => 'twi', 'unitig_0.g1189' => 'ugi', 'unitig_0.g638' => 'ugi', 'unitig_26.g9970' => 'ugi', 'unitig_52.g17358' => 'ugi', 'unitig_61.g26320' => 'ugi', 'vmacro05043' => 'vma', 'vmacro09748' => 'vma', 'vmacro14950' => 'vma', 'VMungo0720G2593' => 'vmu', 'VMungo1080G1382' => 'vmu', 'VMungo1127G1627' => 'vmu', 'VMungo1383G3368' => 'vmu', 'Zm00001eb151200' => 'zma', 'Zm00001eb287690' => 'zma', 'Zm00001eb349780' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D001520' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D001520' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D001520' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001520' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D001520', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '394', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p27110' => 'bna', 'A02p10070' => 'bna', 'A03p14440' => 'bna', 'A09p19350' => 'bna', 'A10p01930' => 'bna', 'A10p11990' => 'bna', 'Aa31LG1G9180' => 'aar', 'Aa31LG1G9190' => 'aar', 'Aa31LG2G12090' => 'aar', 'Aa31LG3G10640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2865' => 'aag', 'Actinidia05734' => 'ach', 'Actinidia21084' => 'ach', 'Actinidia24864' => 'ach', 'Actinidia30897' => 'ach', 'Actinidia35314' => 'ach', 'Actinidia38627' => 'ach', 'Ah.04g159870' => 'amhyb', 'Ah.06g183070' => 'amhyb', 'Ah.06g190270' => 'amhyb', 'AL1G12910' => 'aly', 'AL1G65130' => 'aly', 'AL8G30150' => 'aly', 'Aqoxy2G03172' => 'aox', 'Aqoxy4G02087' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AME8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2FWCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EM1RFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP0QNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9BD7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8YXAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6HGF1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0EQV8' => 'arhy', 'AT1G03380' => 'ath', 'AT1G54710' => 'ath', 'AT5G54730' => 'ath', 'ATR0005G001' => 'atr', 'ATR0580G230' => 'atr', 'ATR0618G181' => 'atr', 'ATR1088G016' => 'atr', 'Atru.chr2.3205' => 'acertr', 'Atru.chr2.524' => 'acertr', 'Atru.chr5.1315' => 'acertr', 'Atru.chr5.1316' => 'acertr', 'Atru.chr5.1317' => 'acertr', 'AUR62000848' => 'cqu', 'AUR62005127' => 'cqu', 'AUR62015639' => 'cqu', 'AUR62029232' => 'cqu', 'BcaB01g04322' => 'bca', 'BcaB04g20140' => 'bca', 'BcaB05g22155' => 'bca', 'BcaB07g31100' => 'bca', 'BcaB08g35831' => 'bca', 'BcaC01g06324' => 'bca', 'BcaC03g14293' => 'bca', 'BcaC04g20308' => 'bca', 'BcaC04g22028' => 'bca', 'BcaC05g24533' => 'bca', 'BcaC09g49609' => 'bca', 'BolC1t03423H' => 'bol', 'BolC2t07777H' => 'bol', 'BolC3t14101H' => 'bol', 'BolC5t28968H' => 'bol', 'BolC9t55356H' => 'bol', 'BolC9t57387H' => 'bol', 'BraA01t02845Z' => 'bra', 'BraA02t06076Z' => 'bra', 'BraA03t10740Z' => 'bra', 'BraA09t37552Z' => 'bra', 'BraA10t42466Z' => 'bra', 'BraA10t43301Z' => 'bra', 'C01p34530' => 'bna', 'C02p16710' => 'bna', 'C03p16810' => 'bna', 'C03p16830' => 'bna', 'C05p01870' => 'bna', 'C09p24390' => 'bna', 'C09p45150' => 'bna', 'CAN.G134.233' => 'can', 'CAN.G337.152' => 'can', 'CANSAT11G2547' => 'cansat', 'CANSAT54G2580' => 'cansat', 'CARHR002760' => 'chi', 'CARHR055840' => 'chi', 'CARHR268040' => 'chi', 'Carub.0001s0251' => 'cru', 'Carub.0002s0889' => 'cru', 'Carub.0008s1497' => 'cru', 'Ca_01755_v3' => 'car', 'Ca_01760_v3' => 'car', 'Ca_01761_v3' => 'car', 'Ca_10081_v3' => 'car', 'Ca_10389_v3' => 'car', 'CBR_g6304' => 'cbr', 'Cc02_g32430' => 'ccan', 'Cc05_g13210' => 'ccan', 'CDE02G0084' => 'cde', 'CDE05G0276' => 'cde', 'CDE05G2341' => 'cde', 'CDE11G0177' => 'cde', 'Cfa006525' => 'cfa', 'Ciclev10000138m.g' => 'ccl', 'Ciclev10007389m.g' => 'ccl', 'Ciclev10018690m.g' => 'ccl', 'CiPaw.07G012900' => 'cil', 'CiPaw.07G097800' => 'cil', 'CiPaw.08G101200' => 'cil', 'CiPaw.08G167900' => 'cil', 'CiPaw.11G183400' => 'cil', 'CiPaw.12G126300' => 'cil', 'ClCG03G016690' => 'cla', 'ClCG05G014790' => 'cla', 'ClCG09G006690' => 'cla', 'COL.COLO4_09156' => 'col', 'COL.COLO4_09563' => 'col', 'COL.COLO4_13556' => 'col', 'Cpa.g.sc84.121' => 'cpa', 'Cpa.g.sc9.141' => 'cpa', 'Cpa.g.sc97.73' => 'cpa', 'CsaV3_1G039320' => 'csa', 'CsaV3_3G022880' => 'csa', 'CsaV3_7G028450' => 'csa', 'CsaV3_UNG229010' => 'csa', 'CsaV3_UNG229020' => 'csa', 'CSS0010177' => 'camsi', 'CSS0012744' => 'camsi', 'CSS0016690' => 'camsi', 'CSS0021708' => 'camsi', 'CSS0026650' => 'camsi', 'CSS0039456' => 'camsi', 'CSS0040351' => 'camsi', 'CSS0042691' => 'camsi', 'DCAR_000309' => 'dca', 'DCAR_001934' => 'dca', 'DCAR_022522' => 'dca', 'DCAR_029450' => 'dca', 'Dinv03937' => 'din', 'Dinv11275' => 'din', 'Dinv22308' => 'din', 'Dinv22920' => 'din', 'Dinv32974' => 'din', 'Duzib138G1839' => 'dzi', 'Duzib177G0168' => 'dzi', 'Duzib211G0097' => 'dzi', 'Duzib213G0680' => 'dzi', 'Duzib268G1066' => 'dzi', 'ECA233G6059' => 'eca', 'ECA246G1276' => 'eca', 'ECA246G3242' => 'eca', 'ECA247G1588' => 'eca', 'EL10Ac4g07983' => 'bvu', 'EL10Ac4g09289' => 'bvu', 'Eucgr.B02027' => 'egr', 'Eucgr.F03423' => 'egr', 'Eucgr.H01605' => 'egr', 'FAN02G2273' => 'fan', 'FAN02G3686' => 'fan', 'FAN05G1651' => 'fan', 'FAN05G2935' => 'fan', 'FAN09G1386' => 'fan', 'FAN11G3615' => 'fan', 'FAN14G0612' => 'fan', 'FAN15G0286' => 'fan', 'FAN15G3740' => 'fan', 'FAN16G2991' => 'fan', 'FAN20G0526' => 'fan', 'FAN21G0746' => 'fan', 'FAN21G1944' => 'fan', 'FAN24G0632' => 'fan', 'FAN25G3568' => 'fan', 'FAN27G1000' => 'fan', 'FvH4_2g24310' => 'fve', 'FvH4_3g21770' => 'fve', 'FvH4_6g04980' => 'fve', 'Glyma.03G148700' => 'gma', 'Glyma.06G267000' => 'gma', 'Glyma.10G157700' => 'gma', 'Glyma.12G136000' => 'gma', 'Glyma.12G214600' => 'gma', 'Glyma.13G287000' => 'gma', 'Glyma.19G152000' => 'gma', 'Glyma.20G230851' => 'gma', 'Glyma.20G230900' => 'gma', 'Gohir.A01G074300' => 'ghi', 'Gohir.A11G261000' => 'ghi', 'Gohir.A11G280400' => 'ghi', 'Gohir.A12G007200' => 'ghi', 'Gohir.A13G172700' => 'ghi', 'Gohir.D01G060800' => 'ghi', 'Gohir.D11G271300' => 'ghi', 'Gohir.D11G290700' => 'ghi', 'Gohir.D12G006600' => 'ghi', 'Gohir.D13G178500' => 'ghi', 'Gorai.002G082200' => 'gra', 'Gorai.007G291800' => 'gra', 'Gorai.007G314600' => 'gra', 'Gorai.008G006700' => 'gra', 'Gorai.013G203700' => 'gra', 'GSVIVG01011044001' => 'vvi', 'GSVIVG01014601001' => 'vvi', 'GSVIVG01014602001' => 'vvi', 'GSVIVG01022020001' => 'vvi', 'HanXRQChr05g0159231' => 'han', 'HanXRQChr08g0233951' => 'han', 'HanXRQChr10g0283131' => 'han', 'HanXRQChr16g0512331' => 'han', 'Haze_04260' => 'cav', 'Haze_04791' => 'cav', 'Haze_09606' => 'cav', 'Haze_27762' => 'cav', 'Hma1.2p1_0257F.1_g104010' => 'hma', 'Hma1.2p1_0538F.1_g174370' => 'hma', 'HPP92_011812' => 'vpl', 'HPP92_015951' => 'vpl', 'Hund02138' => 'sun', 'Hund07027' => 'sun', 'Hund21674' => 'sun', 'Lalb_Chr03g0030151' => 'lal', 'Lalb_Chr03g0030161' => 'lal', 'Lalb_Chr06g0163231' => 'lal', 'Lalb_Chr06g0167841' => 'lal', 'Lalb_Chr14g0366091' => 'lal', 'Lalb_Chr19g0134731' => 'lal', 'Lalb_Chr22g0357051' => 'lal', 'Lj1C41T12' => 'lonja', 'Lj1C863G20' => 'lonja', 'Lj1g0020362' => 'lja', 'Lj3g0015626' => 'lja', 'Lj5g0002193' => 'lja', 'Lj8A165T111' => 'lonja', 'Lj9C678G11' => 'lonja', 'Lsat_1_v5_gn_5_37921' => 'lsa', 'Lsat_1_v5_gn_5_39040' => 'lsa', 'Lsat_1_v5_gn_5_5681' => 'lsa', 'Lsat_1_v5_gn_9_1741' => 'lsa', 'Manes.01G211900' => 'mes', 'Manes.03G122700' => 'mes', 'Manes.08G124500' => 'mes', 'Manes.09G161900' => 'mes', 'Manes.15G076800' => 'mes', 'Mapoly0006s0048' => 'mpo', 'MBI02_g18407_MAGBIO' => 'mbi', 'MBI18_g24130_MAGBIO' => 'mbi', 'MBI18_g28250_MAGBIO' => 'mbi', 'MBI19_g13520_MAGBIO' => 'mbi', 'MD01G1018400' => 'mdo', 'MD03G1089400' => 'mdo', 'MD03G1212200' => 'mdo', 'MD03G1272800' => 'mdo', 'MD04G1212000' => 'mdo', 'MD11G1227300' => 'mdo', 'MD11G1293800' => 'mdo', 'MD12G1226700' => 'mdo', 'Medtr1g082300' => 'mtr', 'Medtr1g089110' => 'mtr', 'Medtr2g082770' => 'mtr', 'MELO3C015358.2' => 'cme', 'MELO3C015877.2' => 'cme', 'MELO3C018126.2' => 'cme', 'Migut.D00247' => 'egut', 'Migut.H01859' => 'egut', 'Migut.N02132' => 'egut', 'MSTRG.12955' => 'ama', 'MSTRG.15168' => 'ama', 'MSTRG.17430' => 'ama', 'MSTRG.18204' => 'ama', 'MSTRG.21589' => 'ama', 'Nitab4.5_0000092g0040' => 'nta', 'Nitab4.5_0000245g0290' => 'nta', 'Nitab4.5_0000397g0080' => 'nta', 'Nitab4.5_0000749g0010' => 'nta', 'Nitab4.5_0001903g0120' => 'nta', 'Nitab4.5_0002238g0080' => 'nta', 'Nn1g03665' => 'nnu', 'Nn1g06996' => 'nnu', 'Nn3g21207' => 'nnu', 'Nn4g26109' => 'nnu', 'Oeu001450.1' => 'oeu', 'Oeu007627.1' => 'oeu', 'Oeu013855.1' => 'oeu', 'Oeu042914.1' => 'oeu', 'Oeu062620.4' => 'oeu', 'Os01g0786900' => 'osa', 'Os05g0405900' => 'osa', 'Peaxi162Scf00434g00727' => 'pax', 'Peaxi162Scf01086g00110' => 'pax', 'PGR031G2196' => 'pgr', 'PGR083G0549' => 'pgr', 'PGR119G2390' => 'pgr', 'PGSC0003DMG400019227' => 'stu', 'PGSC0003DMG400025620' => 'stu', 'PGSC0003DMG400028594' => 'stu', 'Phvul.001G146700' => 'pvu', 'Phvul.005G091300' => 'pvu', 'Phvul.007G183100' => 'pvu', 'Phvul.011G140900' => 'pvu', 'Potri.001G417000' => 'ptr', 'Potri.005G040300' => 'ptr', 'Potri.011G132700' => 'ptr', 'Potri.013G028200' => 'ptr', 'Pp3c20_18810' => 'ppa', 'Pp3c23_8190' => 'ppa', 'Pp3c24_5800' => 'ppa', 'Pp3c8_5760' => 'ppa', 'Prupe.4G201900' => 'ppe', 'Prupe.6G332400' => 'ppe', 'Prupe.8G249300' => 'ppe', 'Psat5g249880' => 'psa', 'Psat6g148560' => 'psa', 'Psat6g169560' => 'psa', 'PSO017G6374' => 'pso', 'PSO170G4830' => 'pso', 'PSO210G2393' => 'pso', 'PSO541G0622' => 'pso', 'PSO675G0598' => 'pso', 'PSO675G2225' => 'pso', 'PSO832G0916' => 'pso', 'QL03p003637' => 'qlo', 'QL08p013394' => 'qlo', 'QL08p013554' => 'qlo', 'QL12p023119' => 'qlo', 'RcHm_v2.0_Chr3g0453491' => 'rch', 'RcHm_v2.0_Chr5g0037241' => 'rch', 'RcHm_v2.0_Chr6g0292181' => 'rch', 'Rhsim01G0278400' => 'rsi', 'Rhsim07G0178500' => 'rsi', 'RhsimUnG0253300' => 'rsi', 'Sabra05G0039300' => 'sbr', 'Sabra11G0119500' => 'sbr', 'Sabra13G0028700' => 'sbr', 'Sabra16G0283400' => 'sbr', 'SalBow3G0971' => 'sbo', 'SalBow7G2055' => 'sbo', 'Sc03g0009120' => 'sci', 'Sc09g0003620' => 'sci', 'Sed0016223' => 'sed', 'Sed0017837' => 'sed', 'Sed0020701' => 'sed', 'Sed0024597' => 'sed', 'Sed0024628' => 'sed', 'SEGI_02236' => 'sgi', 'SEGI_08841' => 'sgi', 'SEGI_29639' => 'sgi', 'SGA_v2.0_scaffold11G05778' => 'sas', 'SGA_v2.0_scaffold1G00433' => 'sas', 'SHI18222' => 'shi', 'SMO146G0123' => 'smo', 'Solyc01g098430.3' => 'sly', 'Solyc07g064060.3' => 'sly', 'Solyc12g005230.3' => 'sly', 'Sopen01g041990' => 'spe', 'Sopen07g032200' => 'spe', 'Sopen12g001220' => 'spe', 'Sp1g02380' => 'spa', 'Sp6g16670' => 'spa', 'SpUN0002_0210' => 'spa', 'TAR362G0210' => 'tar', 'TAR365G1201' => 'tar', 'TAR624G0744' => 'tar', 'TAR626G1457' => 'tar', 'TAR636G1465' => 'tar', 'THA.LOC104801208' => 'tha', 'THA.LOC104805847' => 'tha', 'THA.LOC104813412' => 'tha', 'THA.LOC104821048' => 'tha', 'Thecc.01G286900' => 'tca', 'Thecc.05G298200' => 'tca', 'Thecc.07G054500' => 'tca', 'Thhalv10006706m.g' => 'esa', 'Thhalv10012811m.g' => 'esa', 'Thhalv10023243m.g' => 'esa', 'TPR.G16922' => 'tpr', 'TPR.G2713' => 'tpr', 'TPR.G36798' => 'tpr', 'TWI12G1213' => 'twi', 'TWI36G1034' => 'twi', 'TWI38G1832' => 'twi', 'TWI39G1140' => 'twi', 'unitig_0.g1189' => 'ugi', 'unitig_0.g638' => 'ugi', 'unitig_26.g9970' => 'ugi', 'unitig_52.g17358' => 'ugi', 'unitig_61.g26320' => 'ugi', 'vmacro05043' => 'vma', 'vmacro09748' => 'vma', 'vmacro14950' => 'vma', 'VMungo0720G2593' => 'vmu', 'VMungo1080G1382' => 'vmu', 'VMungo1127G1627' => 'vmu', 'VMungo1383G3368' => 'vmu', 'Zm00001eb151200' => 'zma', 'Zm00001eb287690' => 'zma', 'Zm00001eb349780' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D001520', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D001520' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D001520', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '394', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001520' ) ), 'genes' => array( 'A01p27110' => 'bna', 'A02p10070' => 'bna', 'A03p14440' => 'bna', 'A09p19350' => 'bna', 'A10p01930' => 'bna', 'A10p11990' => 'bna', 'Aa31LG1G9180' => 'aar', 'Aa31LG1G9190' => 'aar', 'Aa31LG2G12090' => 'aar', 'Aa31LG3G10640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2865' => 'aag', 'Actinidia05734' => 'ach', 'Actinidia21084' => 'ach', 'Actinidia24864' => 'ach', 'Actinidia30897' => 'ach', 'Actinidia35314' => 'ach', 'Actinidia38627' => 'ach', 'Ah.04g159870' => 'amhyb', 'Ah.06g183070' => 'amhyb', 'Ah.06g190270' => 'amhyb', 'AL1G12910' => 'aly', 'AL1G65130' => 'aly', 'AL8G30150' => 'aly', 'Aqoxy2G03172' => 'aox', 'Aqoxy4G02087' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AME8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2FWCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EM1RFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP0QNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9BD7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8YXAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6HGF1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0EQV8' => 'arhy', 'AT1G03380' => 'ath', 'AT1G54710' => 'ath', 'AT5G54730' => 'ath', 'ATR0005G001' => 'atr', 'ATR0580G230' => 'atr', 'ATR0618G181' => 'atr', 'ATR1088G016' => 'atr', 'Atru.chr2.3205' => 'acertr', 'Atru.chr2.524' => 'acertr', 'Atru.chr5.1315' => 'acertr', 'Atru.chr5.1316' => 'acertr', 'Atru.chr5.1317' => 'acertr', 'AUR62000848' => 'cqu', 'AUR62005127' => 'cqu', 'AUR62015639' => 'cqu', 'AUR62029232' => 'cqu', 'BcaB01g04322' => 'bca', 'BcaB04g20140' => 'bca', 'BcaB05g22155' => 'bca', 'BcaB07g31100' => 'bca', 'BcaB08g35831' => 'bca', 'BcaC01g06324' => 'bca', 'BcaC03g14293' => 'bca', 'BcaC04g20308' => 'bca', 'BcaC04g22028' => 'bca', 'BcaC05g24533' => 'bca', 'BcaC09g49609' => 'bca', 'BolC1t03423H' => 'bol', 'BolC2t07777H' => 'bol', 'BolC3t14101H' => 'bol', 'BolC5t28968H' => 'bol', 'BolC9t55356H' => 'bol', 'BolC9t57387H' => 'bol', 'BraA01t02845Z' => 'bra', 'BraA02t06076Z' => 'bra', 'BraA03t10740Z' => 'bra', 'BraA09t37552Z' => 'bra', 'BraA10t42466Z' => 'bra', 'BraA10t43301Z' => 'bra', 'C01p34530' => 'bna', 'C02p16710' => 'bna', 'C03p16810' => 'bna', 'C03p16830' => 'bna', 'C05p01870' => 'bna', 'C09p24390' => 'bna', 'C09p45150' => 'bna', 'CAN.G134.233' => 'can', 'CAN.G337.152' => 'can', 'CANSAT11G2547' => 'cansat', 'CANSAT54G2580' => 'cansat', 'CARHR002760' => 'chi', 'CARHR055840' => 'chi', 'CARHR268040' => 'chi', 'Carub.0001s0251' => 'cru', 'Carub.0002s0889' => 'cru', 'Carub.0008s1497' => 'cru', 'Ca_01755_v3' => 'car', 'Ca_01760_v3' => 'car', 'Ca_01761_v3' => 'car', 'Ca_10081_v3' => 'car', 'Ca_10389_v3' => 'car', 'CBR_g6304' => 'cbr', 'Cc02_g32430' => 'ccan', 'Cc05_g13210' => 'ccan', 'CDE02G0084' => 'cde', 'CDE05G0276' => 'cde', 'CDE05G2341' => 'cde', 'CDE11G0177' => 'cde', 'Cfa006525' => 'cfa', 'Ciclev10000138m.g' => 'ccl', 'Ciclev10007389m.g' => 'ccl', 'Ciclev10018690m.g' => 'ccl', 'CiPaw.07G012900' => 'cil', 'CiPaw.07G097800' => 'cil', 'CiPaw.08G101200' => 'cil', 'CiPaw.08G167900' => 'cil', 'CiPaw.11G183400' => 'cil', 'CiPaw.12G126300' => 'cil', 'ClCG03G016690' => 'cla', 'ClCG05G014790' => 'cla', 'ClCG09G006690' => 'cla', 'COL.COLO4_09156' => 'col', 'COL.COLO4_09563' => 'col', 'COL.COLO4_13556' => 'col', 'Cpa.g.sc84.121' => 'cpa', 'Cpa.g.sc9.141' => 'cpa', 'Cpa.g.sc97.73' => 'cpa', 'CsaV3_1G039320' => 'csa', 'CsaV3_3G022880' => 'csa', 'CsaV3_7G028450' => 'csa', 'CsaV3_UNG229010' => 'csa', 'CsaV3_UNG229020' => 'csa', 'CSS0010177' => 'camsi', 'CSS0012744' => 'camsi', 'CSS0016690' => 'camsi', 'CSS0021708' => 'camsi', 'CSS0026650' => 'camsi', 'CSS0039456' => 'camsi', 'CSS0040351' => 'camsi', 'CSS0042691' => 'camsi', 'DCAR_000309' => 'dca', 'DCAR_001934' => 'dca', 'DCAR_022522' => 'dca', 'DCAR_029450' => 'dca', 'Dinv03937' => 'din', 'Dinv11275' => 'din', 'Dinv22308' => 'din', 'Dinv22920' => 'din', 'Dinv32974' => 'din', 'Duzib138G1839' => 'dzi', 'Duzib177G0168' => 'dzi', 'Duzib211G0097' => 'dzi', 'Duzib213G0680' => 'dzi', 'Duzib268G1066' => 'dzi', 'ECA233G6059' => 'eca', 'ECA246G1276' => 'eca', 'ECA246G3242' => 'eca', 'ECA247G1588' => 'eca', 'EL10Ac4g07983' => 'bvu', 'EL10Ac4g09289' => 'bvu', 'Eucgr.B02027' => 'egr', 'Eucgr.F03423' => 'egr', 'Eucgr.H01605' => 'egr', 'FAN02G2273' => 'fan', 'FAN02G3686' => 'fan', 'FAN05G1651' => 'fan', 'FAN05G2935' => 'fan', 'FAN09G1386' => 'fan', 'FAN11G3615' => 'fan', 'FAN14G0612' => 'fan', 'FAN15G0286' => 'fan', 'FAN15G3740' => 'fan', 'FAN16G2991' => 'fan', 'FAN20G0526' => 'fan', 'FAN21G0746' => 'fan', 'FAN21G1944' => 'fan', 'FAN24G0632' => 'fan', 'FAN25G3568' => 'fan', 'FAN27G1000' => 'fan', 'FvH4_2g24310' => 'fve', 'FvH4_3g21770' => 'fve', 'FvH4_6g04980' => 'fve', 'Glyma.03G148700' => 'gma', 'Glyma.06G267000' => 'gma', 'Glyma.10G157700' => 'gma', 'Glyma.12G136000' => 'gma', 'Glyma.12G214600' => 'gma', 'Glyma.13G287000' => 'gma', 'Glyma.19G152000' => 'gma', 'Glyma.20G230851' => 'gma', 'Glyma.20G230900' => 'gma', 'Gohir.A01G074300' => 'ghi', 'Gohir.A11G261000' => 'ghi', 'Gohir.A11G280400' => 'ghi', 'Gohir.A12G007200' => 'ghi', 'Gohir.A13G172700' => 'ghi', 'Gohir.D01G060800' => 'ghi', 'Gohir.D11G271300' => 'ghi', 'Gohir.D11G290700' => 'ghi', 'Gohir.D12G006600' => 'ghi', 'Gohir.D13G178500' => 'ghi', 'Gorai.002G082200' => 'gra', 'Gorai.007G291800' => 'gra', 'Gorai.007G314600' => 'gra', 'Gorai.008G006700' => 'gra', 'Gorai.013G203700' => 'gra', 'GSVIVG01011044001' => 'vvi', 'GSVIVG01014601001' => 'vvi', 'GSVIVG01014602001' => 'vvi', 'GSVIVG01022020001' => 'vvi', 'HanXRQChr05g0159231' => 'han', 'HanXRQChr08g0233951' => 'han', 'HanXRQChr10g0283131' => 'han', 'HanXRQChr16g0512331' => 'han', 'Haze_04260' => 'cav', 'Haze_04791' => 'cav', 'Haze_09606' => 'cav', 'Haze_27762' => 'cav', 'Hma1.2p1_0257F.1_g104010' => 'hma', 'Hma1.2p1_0538F.1_g174370' => 'hma', 'HPP92_011812' => 'vpl', 'HPP92_015951' => 'vpl', 'Hund02138' => 'sun', 'Hund07027' => 'sun', 'Hund21674' => 'sun', 'Lalb_Chr03g0030151' => 'lal', 'Lalb_Chr03g0030161' => 'lal', 'Lalb_Chr06g0163231' => 'lal', 'Lalb_Chr06g0167841' => 'lal', 'Lalb_Chr14g0366091' => 'lal', 'Lalb_Chr19g0134731' => 'lal', 'Lalb_Chr22g0357051' => 'lal', 'Lj1C41T12' => 'lonja', 'Lj1C863G20' => 'lonja', 'Lj1g0020362' => 'lja', 'Lj3g0015626' => 'lja', 'Lj5g0002193' => 'lja', 'Lj8A165T111' => 'lonja', 'Lj9C678G11' => 'lonja', 'Lsat_1_v5_gn_5_37921' => 'lsa', 'Lsat_1_v5_gn_5_39040' => 'lsa', 'Lsat_1_v5_gn_5_5681' => 'lsa', 'Lsat_1_v5_gn_9_1741' => 'lsa', 'Manes.01G211900' => 'mes', 'Manes.03G122700' => 'mes', 'Manes.08G124500' => 'mes', 'Manes.09G161900' => 'mes', 'Manes.15G076800' => 'mes', 'Mapoly0006s0048' => 'mpo', 'MBI02_g18407_MAGBIO' => 'mbi', 'MBI18_g24130_MAGBIO' => 'mbi', 'MBI18_g28250_MAGBIO' => 'mbi', 'MBI19_g13520_MAGBIO' => 'mbi', 'MD01G1018400' => 'mdo', 'MD03G1089400' => 'mdo', 'MD03G1212200' => 'mdo', 'MD03G1272800' => 'mdo', 'MD04G1212000' => 'mdo', 'MD11G1227300' => 'mdo', 'MD11G1293800' => 'mdo', 'MD12G1226700' => 'mdo', 'Medtr1g082300' => 'mtr', 'Medtr1g089110' => 'mtr', 'Medtr2g082770' => 'mtr', 'MELO3C015358.2' => 'cme', 'MELO3C015877.2' => 'cme', 'MELO3C018126.2' => 'cme', 'Migut.D00247' => 'egut', 'Migut.H01859' => 'egut', 'Migut.N02132' => 'egut', 'MSTRG.12955' => 'ama', 'MSTRG.15168' => 'ama', 'MSTRG.17430' => 'ama', 'MSTRG.18204' => 'ama', 'MSTRG.21589' => 'ama', 'Nitab4.5_0000092g0040' => 'nta', 'Nitab4.5_0000245g0290' => 'nta', 'Nitab4.5_0000397g0080' => 'nta', 'Nitab4.5_0000749g0010' => 'nta', 'Nitab4.5_0001903g0120' => 'nta', 'Nitab4.5_0002238g0080' => 'nta', 'Nn1g03665' => 'nnu', 'Nn1g06996' => 'nnu', 'Nn3g21207' => 'nnu', 'Nn4g26109' => 'nnu', 'Oeu001450.1' => 'oeu', 'Oeu007627.1' => 'oeu', 'Oeu013855.1' => 'oeu', 'Oeu042914.1' => 'oeu', 'Oeu062620.4' => 'oeu', 'Os01g0786900' => 'osa', 'Os05g0405900' => 'osa', 'Peaxi162Scf00434g00727' => 'pax', 'Peaxi162Scf01086g00110' => 'pax', 'PGR031G2196' => 'pgr', 'PGR083G0549' => 'pgr', 'PGR119G2390' => 'pgr', 'PGSC0003DMG400019227' => 'stu', 'PGSC0003DMG400025620' => 'stu', 'PGSC0003DMG400028594' => 'stu', 'Phvul.001G146700' => 'pvu', 'Phvul.005G091300' => 'pvu', 'Phvul.007G183100' => 'pvu', 'Phvul.011G140900' => 'pvu', 'Potri.001G417000' => 'ptr', 'Potri.005G040300' => 'ptr', 'Potri.011G132700' => 'ptr', 'Potri.013G028200' => 'ptr', 'Pp3c20_18810' => 'ppa', 'Pp3c23_8190' => 'ppa', 'Pp3c24_5800' => 'ppa', 'Pp3c8_5760' => 'ppa', 'Prupe.4G201900' => 'ppe', 'Prupe.6G332400' => 'ppe', 'Prupe.8G249300' => 'ppe', 'Psat5g249880' => 'psa', 'Psat6g148560' => 'psa', 'Psat6g169560' => 'psa', 'PSO017G6374' => 'pso', 'PSO170G4830' => 'pso', 'PSO210G2393' => 'pso', 'PSO541G0622' => 'pso', 'PSO675G0598' => 'pso', 'PSO675G2225' => 'pso', 'PSO832G0916' => 'pso', 'QL03p003637' => 'qlo', 'QL08p013394' => 'qlo', 'QL08p013554' => 'qlo', 'QL12p023119' => 'qlo', 'RcHm_v2.0_Chr3g0453491' => 'rch', 'RcHm_v2.0_Chr5g0037241' => 'rch', 'RcHm_v2.0_Chr6g0292181' => 'rch', 'Rhsim01G0278400' => 'rsi', 'Rhsim07G0178500' => 'rsi', 'RhsimUnG0253300' => 'rsi', 'Sabra05G0039300' => 'sbr', 'Sabra11G0119500' => 'sbr', 'Sabra13G0028700' => 'sbr', 'Sabra16G0283400' => 'sbr', 'SalBow3G0971' => 'sbo', 'SalBow7G2055' => 'sbo', 'Sc03g0009120' => 'sci', 'Sc09g0003620' => 'sci', 'Sed0016223' => 'sed', 'Sed0017837' => 'sed', 'Sed0020701' => 'sed', 'Sed0024597' => 'sed', 'Sed0024628' => 'sed', 'SEGI_02236' => 'sgi', 'SEGI_08841' => 'sgi', 'SEGI_29639' => 'sgi', 'SGA_v2.0_scaffold11G05778' => 'sas', 'SGA_v2.0_scaffold1G00433' => 'sas', 'SHI18222' => 'shi', 'SMO146G0123' => 'smo', 'Solyc01g098430.3' => 'sly', 'Solyc07g064060.3' => 'sly', 'Solyc12g005230.3' => 'sly', 'Sopen01g041990' => 'spe', 'Sopen07g032200' => 'spe', 'Sopen12g001220' => 'spe', 'Sp1g02380' => 'spa', 'Sp6g16670' => 'spa', 'SpUN0002_0210' => 'spa', 'TAR362G0210' => 'tar', 'TAR365G1201' => 'tar', 'TAR624G0744' => 'tar', 'TAR626G1457' => 'tar', 'TAR636G1465' => 'tar', 'THA.LOC104801208' => 'tha', 'THA.LOC104805847' => 'tha', 'THA.LOC104813412' => 'tha', 'THA.LOC104821048' => 'tha', 'Thecc.01G286900' => 'tca', 'Thecc.05G298200' => 'tca', 'Thecc.07G054500' => 'tca', 'Thhalv10006706m.g' => 'esa', 'Thhalv10012811m.g' => 'esa', 'Thhalv10023243m.g' => 'esa', 'TPR.G16922' => 'tpr', 'TPR.G2713' => 'tpr', 'TPR.G36798' => 'tpr', 'TWI12G1213' => 'twi', 'TWI36G1034' => 'twi', 'TWI38G1832' => 'twi', 'TWI39G1140' => 'twi', 'unitig_0.g1189' => 'ugi', 'unitig_0.g638' => 'ugi', 'unitig_26.g9970' => 'ugi', 'unitig_52.g17358' => 'ugi', 'unitig_61.g26320' => 'ugi', 'vmacro05043' => 'vma', 'vmacro09748' => 'vma', 'vmacro14950' => 'vma', 'VMungo0720G2593' => 'vmu', 'VMungo1080G1382' => 'vmu', 'VMungo1127G1627' => 'vmu', 'VMungo1383G3368' => 'vmu', 'Zm00001eb151200' => 'zma', 'Zm00001eb287690' => 'zma', 'Zm00001eb349780' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D001520' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D001520' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D001520' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001520' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D001520', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '394', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p27110' => 'bna', 'A02p10070' => 'bna', 'A03p14440' => 'bna', 'A09p19350' => 'bna', 'A10p01930' => 'bna', 'A10p11990' => 'bna', 'Aa31LG1G9180' => 'aar', 'Aa31LG1G9190' => 'aar', 'Aa31LG2G12090' => 'aar', 'Aa31LG3G10640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2865' => 'aag', 'Actinidia05734' => 'ach', 'Actinidia21084' => 'ach', 'Actinidia24864' => 'ach', 'Actinidia30897' => 'ach', 'Actinidia35314' => 'ach', 'Actinidia38627' => 'ach', 'Ah.04g159870' => 'amhyb', 'Ah.06g183070' => 'amhyb', 'Ah.06g190270' => 'amhyb', 'AL1G12910' => 'aly', 'AL1G65130' => 'aly', 'AL8G30150' => 'aly', 'Aqoxy2G03172' => 'aox', 'Aqoxy4G02087' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AME8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2FWCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EM1RFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP0QNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9BD7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8YXAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6HGF1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0EQV8' => 'arhy', 'AT1G03380' => 'ath', 'AT1G54710' => 'ath', 'AT5G54730' => 'ath', 'ATR0005G001' => 'atr', 'ATR0580G230' => 'atr', 'ATR0618G181' => 'atr', 'ATR1088G016' => 'atr', 'Atru.chr2.3205' => 'acertr', 'Atru.chr2.524' => 'acertr', 'Atru.chr5.1315' => 'acertr', 'Atru.chr5.1316' => 'acertr', 'Atru.chr5.1317' => 'acertr', 'AUR62000848' => 'cqu', 'AUR62005127' => 'cqu', 'AUR62015639' => 'cqu', 'AUR62029232' => 'cqu', 'BcaB01g04322' => 'bca', 'BcaB04g20140' => 'bca', 'BcaB05g22155' => 'bca', 'BcaB07g31100' => 'bca', 'BcaB08g35831' => 'bca', 'BcaC01g06324' => 'bca', 'BcaC03g14293' => 'bca', 'BcaC04g20308' => 'bca', 'BcaC04g22028' => 'bca', 'BcaC05g24533' => 'bca', 'BcaC09g49609' => 'bca', 'BolC1t03423H' => 'bol', 'BolC2t07777H' => 'bol', 'BolC3t14101H' => 'bol', 'BolC5t28968H' => 'bol', 'BolC9t55356H' => 'bol', 'BolC9t57387H' => 'bol', 'BraA01t02845Z' => 'bra', 'BraA02t06076Z' => 'bra', 'BraA03t10740Z' => 'bra', 'BraA09t37552Z' => 'bra', 'BraA10t42466Z' => 'bra', 'BraA10t43301Z' => 'bra', 'C01p34530' => 'bna', 'C02p16710' => 'bna', 'C03p16810' => 'bna', 'C03p16830' => 'bna', 'C05p01870' => 'bna', 'C09p24390' => 'bna', 'C09p45150' => 'bna', 'CAN.G134.233' => 'can', 'CAN.G337.152' => 'can', 'CANSAT11G2547' => 'cansat', 'CANSAT54G2580' => 'cansat', 'CARHR002760' => 'chi', 'CARHR055840' => 'chi', 'CARHR268040' => 'chi', 'Carub.0001s0251' => 'cru', 'Carub.0002s0889' => 'cru', 'Carub.0008s1497' => 'cru', 'Ca_01755_v3' => 'car', 'Ca_01760_v3' => 'car', 'Ca_01761_v3' => 'car', 'Ca_10081_v3' => 'car', 'Ca_10389_v3' => 'car', 'CBR_g6304' => 'cbr', 'Cc02_g32430' => 'ccan', 'Cc05_g13210' => 'ccan', 'CDE02G0084' => 'cde', 'CDE05G0276' => 'cde', 'CDE05G2341' => 'cde', 'CDE11G0177' => 'cde', 'Cfa006525' => 'cfa', 'Ciclev10000138m.g' => 'ccl', 'Ciclev10007389m.g' => 'ccl', 'Ciclev10018690m.g' => 'ccl', 'CiPaw.07G012900' => 'cil', 'CiPaw.07G097800' => 'cil', 'CiPaw.08G101200' => 'cil', 'CiPaw.08G167900' => 'cil', 'CiPaw.11G183400' => 'cil', 'CiPaw.12G126300' => 'cil', 'ClCG03G016690' => 'cla', 'ClCG05G014790' => 'cla', 'ClCG09G006690' => 'cla', 'COL.COLO4_09156' => 'col', 'COL.COLO4_09563' => 'col', 'COL.COLO4_13556' => 'col', 'Cpa.g.sc84.121' => 'cpa', 'Cpa.g.sc9.141' => 'cpa', 'Cpa.g.sc97.73' => 'cpa', 'CsaV3_1G039320' => 'csa', 'CsaV3_3G022880' => 'csa', 'CsaV3_7G028450' => 'csa', 'CsaV3_UNG229010' => 'csa', 'CsaV3_UNG229020' => 'csa', 'CSS0010177' => 'camsi', 'CSS0012744' => 'camsi', 'CSS0016690' => 'camsi', 'CSS0021708' => 'camsi', 'CSS0026650' => 'camsi', 'CSS0039456' => 'camsi', 'CSS0040351' => 'camsi', 'CSS0042691' => 'camsi', 'DCAR_000309' => 'dca', 'DCAR_001934' => 'dca', 'DCAR_022522' => 'dca', 'DCAR_029450' => 'dca', 'Dinv03937' => 'din', 'Dinv11275' => 'din', 'Dinv22308' => 'din', 'Dinv22920' => 'din', 'Dinv32974' => 'din', 'Duzib138G1839' => 'dzi', 'Duzib177G0168' => 'dzi', 'Duzib211G0097' => 'dzi', 'Duzib213G0680' => 'dzi', 'Duzib268G1066' => 'dzi', 'ECA233G6059' => 'eca', 'ECA246G1276' => 'eca', 'ECA246G3242' => 'eca', 'ECA247G1588' => 'eca', 'EL10Ac4g07983' => 'bvu', 'EL10Ac4g09289' => 'bvu', 'Eucgr.B02027' => 'egr', 'Eucgr.F03423' => 'egr', 'Eucgr.H01605' => 'egr', 'FAN02G2273' => 'fan', 'FAN02G3686' => 'fan', 'FAN05G1651' => 'fan', 'FAN05G2935' => 'fan', 'FAN09G1386' => 'fan', 'FAN11G3615' => 'fan', 'FAN14G0612' => 'fan', 'FAN15G0286' => 'fan', 'FAN15G3740' => 'fan', 'FAN16G2991' => 'fan', 'FAN20G0526' => 'fan', 'FAN21G0746' => 'fan', 'FAN21G1944' => 'fan', 'FAN24G0632' => 'fan', 'FAN25G3568' => 'fan', 'FAN27G1000' => 'fan', 'FvH4_2g24310' => 'fve', 'FvH4_3g21770' => 'fve', 'FvH4_6g04980' => 'fve', 'Glyma.03G148700' => 'gma', 'Glyma.06G267000' => 'gma', 'Glyma.10G157700' => 'gma', 'Glyma.12G136000' => 'gma', 'Glyma.12G214600' => 'gma', 'Glyma.13G287000' => 'gma', 'Glyma.19G152000' => 'gma', 'Glyma.20G230851' => 'gma', 'Glyma.20G230900' => 'gma', 'Gohir.A01G074300' => 'ghi', 'Gohir.A11G261000' => 'ghi', 'Gohir.A11G280400' => 'ghi', 'Gohir.A12G007200' => 'ghi', 'Gohir.A13G172700' => 'ghi', 'Gohir.D01G060800' => 'ghi', 'Gohir.D11G271300' => 'ghi', 'Gohir.D11G290700' => 'ghi', 'Gohir.D12G006600' => 'ghi', 'Gohir.D13G178500' => 'ghi', 'Gorai.002G082200' => 'gra', 'Gorai.007G291800' => 'gra', 'Gorai.007G314600' => 'gra', 'Gorai.008G006700' => 'gra', 'Gorai.013G203700' => 'gra', 'GSVIVG01011044001' => 'vvi', 'GSVIVG01014601001' => 'vvi', 'GSVIVG01014602001' => 'vvi', 'GSVIVG01022020001' => 'vvi', 'HanXRQChr05g0159231' => 'han', 'HanXRQChr08g0233951' => 'han', 'HanXRQChr10g0283131' => 'han', 'HanXRQChr16g0512331' => 'han', 'Haze_04260' => 'cav', 'Haze_04791' => 'cav', 'Haze_09606' => 'cav', 'Haze_27762' => 'cav', 'Hma1.2p1_0257F.1_g104010' => 'hma', 'Hma1.2p1_0538F.1_g174370' => 'hma', 'HPP92_011812' => 'vpl', 'HPP92_015951' => 'vpl', 'Hund02138' => 'sun', 'Hund07027' => 'sun', 'Hund21674' => 'sun', 'Lalb_Chr03g0030151' => 'lal', 'Lalb_Chr03g0030161' => 'lal', 'Lalb_Chr06g0163231' => 'lal', 'Lalb_Chr06g0167841' => 'lal', 'Lalb_Chr14g0366091' => 'lal', 'Lalb_Chr19g0134731' => 'lal', 'Lalb_Chr22g0357051' => 'lal', 'Lj1C41T12' => 'lonja', 'Lj1C863G20' => 'lonja', 'Lj1g0020362' => 'lja', 'Lj3g0015626' => 'lja', 'Lj5g0002193' => 'lja', 'Lj8A165T111' => 'lonja', 'Lj9C678G11' => 'lonja', 'Lsat_1_v5_gn_5_37921' => 'lsa', 'Lsat_1_v5_gn_5_39040' => 'lsa', 'Lsat_1_v5_gn_5_5681' => 'lsa', 'Lsat_1_v5_gn_9_1741' => 'lsa', 'Manes.01G211900' => 'mes', 'Manes.03G122700' => 'mes', 'Manes.08G124500' => 'mes', 'Manes.09G161900' => 'mes', 'Manes.15G076800' => 'mes', 'Mapoly0006s0048' => 'mpo', 'MBI02_g18407_MAGBIO' => 'mbi', 'MBI18_g24130_MAGBIO' => 'mbi', 'MBI18_g28250_MAGBIO' => 'mbi', 'MBI19_g13520_MAGBIO' => 'mbi', 'MD01G1018400' => 'mdo', 'MD03G1089400' => 'mdo', 'MD03G1212200' => 'mdo', 'MD03G1272800' => 'mdo', 'MD04G1212000' => 'mdo', 'MD11G1227300' => 'mdo', 'MD11G1293800' => 'mdo', 'MD12G1226700' => 'mdo', 'Medtr1g082300' => 'mtr', 'Medtr1g089110' => 'mtr', 'Medtr2g082770' => 'mtr', 'MELO3C015358.2' => 'cme', 'MELO3C015877.2' => 'cme', 'MELO3C018126.2' => 'cme', 'Migut.D00247' => 'egut', 'Migut.H01859' => 'egut', 'Migut.N02132' => 'egut', 'MSTRG.12955' => 'ama', 'MSTRG.15168' => 'ama', 'MSTRG.17430' => 'ama', 'MSTRG.18204' => 'ama', 'MSTRG.21589' => 'ama', 'Nitab4.5_0000092g0040' => 'nta', 'Nitab4.5_0000245g0290' => 'nta', 'Nitab4.5_0000397g0080' => 'nta', 'Nitab4.5_0000749g0010' => 'nta', 'Nitab4.5_0001903g0120' => 'nta', 'Nitab4.5_0002238g0080' => 'nta', 'Nn1g03665' => 'nnu', 'Nn1g06996' => 'nnu', 'Nn3g21207' => 'nnu', 'Nn4g26109' => 'nnu', 'Oeu001450.1' => 'oeu', 'Oeu007627.1' => 'oeu', 'Oeu013855.1' => 'oeu', 'Oeu042914.1' => 'oeu', 'Oeu062620.4' => 'oeu', 'Os01g0786900' => 'osa', 'Os05g0405900' => 'osa', 'Peaxi162Scf00434g00727' => 'pax', 'Peaxi162Scf01086g00110' => 'pax', 'PGR031G2196' => 'pgr', 'PGR083G0549' => 'pgr', 'PGR119G2390' => 'pgr', 'PGSC0003DMG400019227' => 'stu', 'PGSC0003DMG400025620' => 'stu', 'PGSC0003DMG400028594' => 'stu', 'Phvul.001G146700' => 'pvu', 'Phvul.005G091300' => 'pvu', 'Phvul.007G183100' => 'pvu', 'Phvul.011G140900' => 'pvu', 'Potri.001G417000' => 'ptr', 'Potri.005G040300' => 'ptr', 'Potri.011G132700' => 'ptr', 'Potri.013G028200' => 'ptr', 'Pp3c20_18810' => 'ppa', 'Pp3c23_8190' => 'ppa', 'Pp3c24_5800' => 'ppa', 'Pp3c8_5760' => 'ppa', 'Prupe.4G201900' => 'ppe', 'Prupe.6G332400' => 'ppe', 'Prupe.8G249300' => 'ppe', 'Psat5g249880' => 'psa', 'Psat6g148560' => 'psa', 'Psat6g169560' => 'psa', 'PSO017G6374' => 'pso', 'PSO170G4830' => 'pso', 'PSO210G2393' => 'pso', 'PSO541G0622' => 'pso', 'PSO675G0598' => 'pso', 'PSO675G2225' => 'pso', 'PSO832G0916' => 'pso', 'QL03p003637' => 'qlo', 'QL08p013394' => 'qlo', 'QL08p013554' => 'qlo', 'QL12p023119' => 'qlo', 'RcHm_v2.0_Chr3g0453491' => 'rch', 'RcHm_v2.0_Chr5g0037241' => 'rch', 'RcHm_v2.0_Chr6g0292181' => 'rch', 'Rhsim01G0278400' => 'rsi', 'Rhsim07G0178500' => 'rsi', 'RhsimUnG0253300' => 'rsi', 'Sabra05G0039300' => 'sbr', 'Sabra11G0119500' => 'sbr', 'Sabra13G0028700' => 'sbr', 'Sabra16G0283400' => 'sbr', 'SalBow3G0971' => 'sbo', 'SalBow7G2055' => 'sbo', 'Sc03g0009120' => 'sci', 'Sc09g0003620' => 'sci', 'Sed0016223' => 'sed', 'Sed0017837' => 'sed', 'Sed0020701' => 'sed', 'Sed0024597' => 'sed', 'Sed0024628' => 'sed', 'SEGI_02236' => 'sgi', 'SEGI_08841' => 'sgi', 'SEGI_29639' => 'sgi', 'SGA_v2.0_scaffold11G05778' => 'sas', 'SGA_v2.0_scaffold1G00433' => 'sas', 'SHI18222' => 'shi', 'SMO146G0123' => 'smo', 'Solyc01g098430.3' => 'sly', 'Solyc07g064060.3' => 'sly', 'Solyc12g005230.3' => 'sly', 'Sopen01g041990' => 'spe', 'Sopen07g032200' => 'spe', 'Sopen12g001220' => 'spe', 'Sp1g02380' => 'spa', 'Sp6g16670' => 'spa', 'SpUN0002_0210' => 'spa', 'TAR362G0210' => 'tar', 'TAR365G1201' => 'tar', 'TAR624G0744' => 'tar', 'TAR626G1457' => 'tar', 'TAR636G1465' => 'tar', 'THA.LOC104801208' => 'tha', 'THA.LOC104805847' => 'tha', 'THA.LOC104813412' => 'tha', 'THA.LOC104821048' => 'tha', 'Thecc.01G286900' => 'tca', 'Thecc.05G298200' => 'tca', 'Thecc.07G054500' => 'tca', 'Thhalv10006706m.g' => 'esa', 'Thhalv10012811m.g' => 'esa', 'Thhalv10023243m.g' => 'esa', 'TPR.G16922' => 'tpr', 'TPR.G2713' => 'tpr', 'TPR.G36798' => 'tpr', 'TWI12G1213' => 'twi', 'TWI36G1034' => 'twi', 'TWI38G1832' => 'twi', 'TWI39G1140' => 'twi', 'unitig_0.g1189' => 'ugi', 'unitig_0.g638' => 'ugi', 'unitig_26.g9970' => 'ugi', 'unitig_52.g17358' => 'ugi', 'unitig_61.g26320' => 'ugi', 'vmacro05043' => 'vma', 'vmacro09748' => 'vma', 'vmacro14950' => 'vma', 'VMungo0720G2593' => 'vmu', 'VMungo1080G1382' => 'vmu', 'VMungo1127G1627' => 'vmu', 'VMungo1383G3368' => 'vmu', 'Zm00001eb151200' => 'zma', 'Zm00001eb287690' => 'zma', 'Zm00001eb349780' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D001520', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D001520' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D001520', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '394', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001520' ) ), 'genes' => array( 'A01p27110' => 'bna', 'A02p10070' => 'bna', 'A03p14440' => 'bna', 'A09p19350' => 'bna', 'A10p01930' => 'bna', 'A10p11990' => 'bna', 'Aa31LG1G9180' => 'aar', 'Aa31LG1G9190' => 'aar', 'Aa31LG2G12090' => 'aar', 'Aa31LG3G10640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2865' => 'aag', 'Actinidia05734' => 'ach', 'Actinidia21084' => 'ach', 'Actinidia24864' => 'ach', 'Actinidia30897' => 'ach', 'Actinidia35314' => 'ach', 'Actinidia38627' => 'ach', 'Ah.04g159870' => 'amhyb', 'Ah.06g183070' => 'amhyb', 'Ah.06g190270' => 'amhyb', 'AL1G12910' => 'aly', 'AL1G65130' => 'aly', 'AL8G30150' => 'aly', 'Aqoxy2G03172' => 'aox', 'Aqoxy4G02087' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AME8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2FWCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EM1RFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP0QNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9BD7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8YXAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6HGF1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0EQV8' => 'arhy', 'AT1G03380' => 'ath', 'AT1G54710' => 'ath', 'AT5G54730' => 'ath', 'ATR0005G001' => 'atr', 'ATR0580G230' => 'atr', 'ATR0618G181' => 'atr', 'ATR1088G016' => 'atr', 'Atru.chr2.3205' => 'acertr', 'Atru.chr2.524' => 'acertr', 'Atru.chr5.1315' => 'acertr', 'Atru.chr5.1316' => 'acertr', 'Atru.chr5.1317' => 'acertr', 'AUR62000848' => 'cqu', 'AUR62005127' => 'cqu', 'AUR62015639' => 'cqu', 'AUR62029232' => 'cqu', 'BcaB01g04322' => 'bca', 'BcaB04g20140' => 'bca', 'BcaB05g22155' => 'bca', 'BcaB07g31100' => 'bca', 'BcaB08g35831' => 'bca', 'BcaC01g06324' => 'bca', 'BcaC03g14293' => 'bca', 'BcaC04g20308' => 'bca', 'BcaC04g22028' => 'bca', 'BcaC05g24533' => 'bca', 'BcaC09g49609' => 'bca', 'BolC1t03423H' => 'bol', 'BolC2t07777H' => 'bol', 'BolC3t14101H' => 'bol', 'BolC5t28968H' => 'bol', 'BolC9t55356H' => 'bol', 'BolC9t57387H' => 'bol', 'BraA01t02845Z' => 'bra', 'BraA02t06076Z' => 'bra', 'BraA03t10740Z' => 'bra', 'BraA09t37552Z' => 'bra', 'BraA10t42466Z' => 'bra', 'BraA10t43301Z' => 'bra', 'C01p34530' => 'bna', 'C02p16710' => 'bna', 'C03p16810' => 'bna', 'C03p16830' => 'bna', 'C05p01870' => 'bna', 'C09p24390' => 'bna', 'C09p45150' => 'bna', 'CAN.G134.233' => 'can', 'CAN.G337.152' => 'can', 'CANSAT11G2547' => 'cansat', 'CANSAT54G2580' => 'cansat', 'CARHR002760' => 'chi', 'CARHR055840' => 'chi', 'CARHR268040' => 'chi', 'Carub.0001s0251' => 'cru', 'Carub.0002s0889' => 'cru', 'Carub.0008s1497' => 'cru', 'Ca_01755_v3' => 'car', 'Ca_01760_v3' => 'car', 'Ca_01761_v3' => 'car', 'Ca_10081_v3' => 'car', 'Ca_10389_v3' => 'car', 'CBR_g6304' => 'cbr', 'Cc02_g32430' => 'ccan', 'Cc05_g13210' => 'ccan', 'CDE02G0084' => 'cde', 'CDE05G0276' => 'cde', 'CDE05G2341' => 'cde', 'CDE11G0177' => 'cde', 'Cfa006525' => 'cfa', 'Ciclev10000138m.g' => 'ccl', 'Ciclev10007389m.g' => 'ccl', 'Ciclev10018690m.g' => 'ccl', 'CiPaw.07G012900' => 'cil', 'CiPaw.07G097800' => 'cil', 'CiPaw.08G101200' => 'cil', 'CiPaw.08G167900' => 'cil', 'CiPaw.11G183400' => 'cil', 'CiPaw.12G126300' => 'cil', 'ClCG03G016690' => 'cla', 'ClCG05G014790' => 'cla', 'ClCG09G006690' => 'cla', 'COL.COLO4_09156' => 'col', 'COL.COLO4_09563' => 'col', 'COL.COLO4_13556' => 'col', 'Cpa.g.sc84.121' => 'cpa', 'Cpa.g.sc9.141' => 'cpa', 'Cpa.g.sc97.73' => 'cpa', 'CsaV3_1G039320' => 'csa', 'CsaV3_3G022880' => 'csa', 'CsaV3_7G028450' => 'csa', 'CsaV3_UNG229010' => 'csa', 'CsaV3_UNG229020' => 'csa', 'CSS0010177' => 'camsi', 'CSS0012744' => 'camsi', 'CSS0016690' => 'camsi', 'CSS0021708' => 'camsi', 'CSS0026650' => 'camsi', 'CSS0039456' => 'camsi', 'CSS0040351' => 'camsi', 'CSS0042691' => 'camsi', 'DCAR_000309' => 'dca', 'DCAR_001934' => 'dca', 'DCAR_022522' => 'dca', 'DCAR_029450' => 'dca', 'Dinv03937' => 'din', 'Dinv11275' => 'din', 'Dinv22308' => 'din', 'Dinv22920' => 'din', 'Dinv32974' => 'din', 'Duzib138G1839' => 'dzi', 'Duzib177G0168' => 'dzi', 'Duzib211G0097' => 'dzi', 'Duzib213G0680' => 'dzi', 'Duzib268G1066' => 'dzi', 'ECA233G6059' => 'eca', 'ECA246G1276' => 'eca', 'ECA246G3242' => 'eca', 'ECA247G1588' => 'eca', 'EL10Ac4g07983' => 'bvu', 'EL10Ac4g09289' => 'bvu', 'Eucgr.B02027' => 'egr', 'Eucgr.F03423' => 'egr', 'Eucgr.H01605' => 'egr', 'FAN02G2273' => 'fan', 'FAN02G3686' => 'fan', 'FAN05G1651' => 'fan', 'FAN05G2935' => 'fan', 'FAN09G1386' => 'fan', 'FAN11G3615' => 'fan', 'FAN14G0612' => 'fan', 'FAN15G0286' => 'fan', 'FAN15G3740' => 'fan', 'FAN16G2991' => 'fan', 'FAN20G0526' => 'fan', 'FAN21G0746' => 'fan', 'FAN21G1944' => 'fan', 'FAN24G0632' => 'fan', 'FAN25G3568' => 'fan', 'FAN27G1000' => 'fan', 'FvH4_2g24310' => 'fve', 'FvH4_3g21770' => 'fve', 'FvH4_6g04980' => 'fve', 'Glyma.03G148700' => 'gma', 'Glyma.06G267000' => 'gma', 'Glyma.10G157700' => 'gma', 'Glyma.12G136000' => 'gma', 'Glyma.12G214600' => 'gma', 'Glyma.13G287000' => 'gma', 'Glyma.19G152000' => 'gma', 'Glyma.20G230851' => 'gma', 'Glyma.20G230900' => 'gma', 'Gohir.A01G074300' => 'ghi', 'Gohir.A11G261000' => 'ghi', 'Gohir.A11G280400' => 'ghi', 'Gohir.A12G007200' => 'ghi', 'Gohir.A13G172700' => 'ghi', 'Gohir.D01G060800' => 'ghi', 'Gohir.D11G271300' => 'ghi', 'Gohir.D11G290700' => 'ghi', 'Gohir.D12G006600' => 'ghi', 'Gohir.D13G178500' => 'ghi', 'Gorai.002G082200' => 'gra', 'Gorai.007G291800' => 'gra', 'Gorai.007G314600' => 'gra', 'Gorai.008G006700' => 'gra', 'Gorai.013G203700' => 'gra', 'GSVIVG01011044001' => 'vvi', 'GSVIVG01014601001' => 'vvi', 'GSVIVG01014602001' => 'vvi', 'GSVIVG01022020001' => 'vvi', 'HanXRQChr05g0159231' => 'han', 'HanXRQChr08g0233951' => 'han', 'HanXRQChr10g0283131' => 'han', 'HanXRQChr16g0512331' => 'han', 'Haze_04260' => 'cav', 'Haze_04791' => 'cav', 'Haze_09606' => 'cav', 'Haze_27762' => 'cav', 'Hma1.2p1_0257F.1_g104010' => 'hma', 'Hma1.2p1_0538F.1_g174370' => 'hma', 'HPP92_011812' => 'vpl', 'HPP92_015951' => 'vpl', 'Hund02138' => 'sun', 'Hund07027' => 'sun', 'Hund21674' => 'sun', 'Lalb_Chr03g0030151' => 'lal', 'Lalb_Chr03g0030161' => 'lal', 'Lalb_Chr06g0163231' => 'lal', 'Lalb_Chr06g0167841' => 'lal', 'Lalb_Chr14g0366091' => 'lal', 'Lalb_Chr19g0134731' => 'lal', 'Lalb_Chr22g0357051' => 'lal', 'Lj1C41T12' => 'lonja', 'Lj1C863G20' => 'lonja', 'Lj1g0020362' => 'lja', 'Lj3g0015626' => 'lja', 'Lj5g0002193' => 'lja', 'Lj8A165T111' => 'lonja', 'Lj9C678G11' => 'lonja', 'Lsat_1_v5_gn_5_37921' => 'lsa', 'Lsat_1_v5_gn_5_39040' => 'lsa', 'Lsat_1_v5_gn_5_5681' => 'lsa', 'Lsat_1_v5_gn_9_1741' => 'lsa', 'Manes.01G211900' => 'mes', 'Manes.03G122700' => 'mes', 'Manes.08G124500' => 'mes', 'Manes.09G161900' => 'mes', 'Manes.15G076800' => 'mes', 'Mapoly0006s0048' => 'mpo', 'MBI02_g18407_MAGBIO' => 'mbi', 'MBI18_g24130_MAGBIO' => 'mbi', 'MBI18_g28250_MAGBIO' => 'mbi', 'MBI19_g13520_MAGBIO' => 'mbi', 'MD01G1018400' => 'mdo', 'MD03G1089400' => 'mdo', 'MD03G1212200' => 'mdo', 'MD03G1272800' => 'mdo', 'MD04G1212000' => 'mdo', 'MD11G1227300' => 'mdo', 'MD11G1293800' => 'mdo', 'MD12G1226700' => 'mdo', 'Medtr1g082300' => 'mtr', 'Medtr1g089110' => 'mtr', 'Medtr2g082770' => 'mtr', 'MELO3C015358.2' => 'cme', 'MELO3C015877.2' => 'cme', 'MELO3C018126.2' => 'cme', 'Migut.D00247' => 'egut', 'Migut.H01859' => 'egut', 'Migut.N02132' => 'egut', 'MSTRG.12955' => 'ama', 'MSTRG.15168' => 'ama', 'MSTRG.17430' => 'ama', 'MSTRG.18204' => 'ama', 'MSTRG.21589' => 'ama', 'Nitab4.5_0000092g0040' => 'nta', 'Nitab4.5_0000245g0290' => 'nta', 'Nitab4.5_0000397g0080' => 'nta', 'Nitab4.5_0000749g0010' => 'nta', 'Nitab4.5_0001903g0120' => 'nta', 'Nitab4.5_0002238g0080' => 'nta', 'Nn1g03665' => 'nnu', 'Nn1g06996' => 'nnu', 'Nn3g21207' => 'nnu', 'Nn4g26109' => 'nnu', 'Oeu001450.1' => 'oeu', 'Oeu007627.1' => 'oeu', 'Oeu013855.1' => 'oeu', 'Oeu042914.1' => 'oeu', 'Oeu062620.4' => 'oeu', 'Os01g0786900' => 'osa', 'Os05g0405900' => 'osa', 'Peaxi162Scf00434g00727' => 'pax', 'Peaxi162Scf01086g00110' => 'pax', 'PGR031G2196' => 'pgr', 'PGR083G0549' => 'pgr', 'PGR119G2390' => 'pgr', 'PGSC0003DMG400019227' => 'stu', 'PGSC0003DMG400025620' => 'stu', 'PGSC0003DMG400028594' => 'stu', 'Phvul.001G146700' => 'pvu', 'Phvul.005G091300' => 'pvu', 'Phvul.007G183100' => 'pvu', 'Phvul.011G140900' => 'pvu', 'Potri.001G417000' => 'ptr', 'Potri.005G040300' => 'ptr', 'Potri.011G132700' => 'ptr', 'Potri.013G028200' => 'ptr', 'Pp3c20_18810' => 'ppa', 'Pp3c23_8190' => 'ppa', 'Pp3c24_5800' => 'ppa', 'Pp3c8_5760' => 'ppa', 'Prupe.4G201900' => 'ppe', 'Prupe.6G332400' => 'ppe', 'Prupe.8G249300' => 'ppe', 'Psat5g249880' => 'psa', 'Psat6g148560' => 'psa', 'Psat6g169560' => 'psa', 'PSO017G6374' => 'pso', 'PSO170G4830' => 'pso', 'PSO210G2393' => 'pso', 'PSO541G0622' => 'pso', 'PSO675G0598' => 'pso', 'PSO675G2225' => 'pso', 'PSO832G0916' => 'pso', 'QL03p003637' => 'qlo', 'QL08p013394' => 'qlo', 'QL08p013554' => 'qlo', 'QL12p023119' => 'qlo', 'RcHm_v2.0_Chr3g0453491' => 'rch', 'RcHm_v2.0_Chr5g0037241' => 'rch', 'RcHm_v2.0_Chr6g0292181' => 'rch', 'Rhsim01G0278400' => 'rsi', 'Rhsim07G0178500' => 'rsi', 'RhsimUnG0253300' => 'rsi', 'Sabra05G0039300' => 'sbr', 'Sabra11G0119500' => 'sbr', 'Sabra13G0028700' => 'sbr', 'Sabra16G0283400' => 'sbr', 'SalBow3G0971' => 'sbo', 'SalBow7G2055' => 'sbo', 'Sc03g0009120' => 'sci', 'Sc09g0003620' => 'sci', 'Sed0016223' => 'sed', 'Sed0017837' => 'sed', 'Sed0020701' => 'sed', 'Sed0024597' => 'sed', 'Sed0024628' => 'sed', 'SEGI_02236' => 'sgi', 'SEGI_08841' => 'sgi', 'SEGI_29639' => 'sgi', 'SGA_v2.0_scaffold11G05778' => 'sas', 'SGA_v2.0_scaffold1G00433' => 'sas', 'SHI18222' => 'shi', 'SMO146G0123' => 'smo', 'Solyc01g098430.3' => 'sly', 'Solyc07g064060.3' => 'sly', 'Solyc12g005230.3' => 'sly', 'Sopen01g041990' => 'spe', 'Sopen07g032200' => 'spe', 'Sopen12g001220' => 'spe', 'Sp1g02380' => 'spa', 'Sp6g16670' => 'spa', 'SpUN0002_0210' => 'spa', 'TAR362G0210' => 'tar', 'TAR365G1201' => 'tar', 'TAR624G0744' => 'tar', 'TAR626G1457' => 'tar', 'TAR636G1465' => 'tar', 'THA.LOC104801208' => 'tha', 'THA.LOC104805847' => 'tha', 'THA.LOC104813412' => 'tha', 'THA.LOC104821048' => 'tha', 'Thecc.01G286900' => 'tca', 'Thecc.05G298200' => 'tca', 'Thecc.07G054500' => 'tca', 'Thhalv10006706m.g' => 'esa', 'Thhalv10012811m.g' => 'esa', 'Thhalv10023243m.g' => 'esa', 'TPR.G16922' => 'tpr', 'TPR.G2713' => 'tpr', 'TPR.G36798' => 'tpr', 'TWI12G1213' => 'twi', 'TWI36G1034' => 'twi', 'TWI38G1832' => 'twi', 'TWI39G1140' => 'twi', 'unitig_0.g1189' => 'ugi', 'unitig_0.g638' => 'ugi', 'unitig_26.g9970' => 'ugi', 'unitig_52.g17358' => 'ugi', 'unitig_61.g26320' => 'ugi', 'vmacro05043' => 'vma', 'vmacro09748' => 'vma', 'vmacro14950' => 'vma', 'VMungo0720G2593' => 'vmu', 'VMungo1080G1382' => 'vmu', 'VMungo1127G1627' => 'vmu', 'VMungo1383G3368' => 'vmu', 'Zm00001eb151200' => 'zma', 'Zm00001eb287690' => 'zma', 'Zm00001eb349780' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D001520' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D001520' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D001520' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001520' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D001520', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '394', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p27110' => 'bna', 'A02p10070' => 'bna', 'A03p14440' => 'bna', 'A09p19350' => 'bna', 'A10p01930' => 'bna', 'A10p11990' => 'bna', 'Aa31LG1G9180' => 'aar', 'Aa31LG1G9190' => 'aar', 'Aa31LG2G12090' => 'aar', 'Aa31LG3G10640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2865' => 'aag', 'Actinidia05734' => 'ach', 'Actinidia21084' => 'ach', 'Actinidia24864' => 'ach', 'Actinidia30897' => 'ach', 'Actinidia35314' => 'ach', 'Actinidia38627' => 'ach', 'Ah.04g159870' => 'amhyb', 'Ah.06g183070' => 'amhyb', 'Ah.06g190270' => 'amhyb', 'AL1G12910' => 'aly', 'AL1G65130' => 'aly', 'AL8G30150' => 'aly', 'Aqoxy2G03172' => 'aox', 'Aqoxy4G02087' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AME8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2FWCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EM1RFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP0QNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9BD7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8YXAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6HGF1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0EQV8' => 'arhy', 'AT1G03380' => 'ath', 'AT1G54710' => 'ath', 'AT5G54730' => 'ath', 'ATR0005G001' => 'atr', 'ATR0580G230' => 'atr', 'ATR0618G181' => 'atr', 'ATR1088G016' => 'atr', 'Atru.chr2.3205' => 'acertr', 'Atru.chr2.524' => 'acertr', 'Atru.chr5.1315' => 'acertr', 'Atru.chr5.1316' => 'acertr', 'Atru.chr5.1317' => 'acertr', 'AUR62000848' => 'cqu', 'AUR62005127' => 'cqu', 'AUR62015639' => 'cqu', 'AUR62029232' => 'cqu', 'BcaB01g04322' => 'bca', 'BcaB04g20140' => 'bca', 'BcaB05g22155' => 'bca', 'BcaB07g31100' => 'bca', 'BcaB08g35831' => 'bca', 'BcaC01g06324' => 'bca', 'BcaC03g14293' => 'bca', 'BcaC04g20308' => 'bca', 'BcaC04g22028' => 'bca', 'BcaC05g24533' => 'bca', 'BcaC09g49609' => 'bca', 'BolC1t03423H' => 'bol', 'BolC2t07777H' => 'bol', 'BolC3t14101H' => 'bol', 'BolC5t28968H' => 'bol', 'BolC9t55356H' => 'bol', 'BolC9t57387H' => 'bol', 'BraA01t02845Z' => 'bra', 'BraA02t06076Z' => 'bra', 'BraA03t10740Z' => 'bra', 'BraA09t37552Z' => 'bra', 'BraA10t42466Z' => 'bra', 'BraA10t43301Z' => 'bra', 'C01p34530' => 'bna', 'C02p16710' => 'bna', 'C03p16810' => 'bna', 'C03p16830' => 'bna', 'C05p01870' => 'bna', 'C09p24390' => 'bna', 'C09p45150' => 'bna', 'CAN.G134.233' => 'can', 'CAN.G337.152' => 'can', 'CANSAT11G2547' => 'cansat', 'CANSAT54G2580' => 'cansat', 'CARHR002760' => 'chi', 'CARHR055840' => 'chi', 'CARHR268040' => 'chi', 'Carub.0001s0251' => 'cru', 'Carub.0002s0889' => 'cru', 'Carub.0008s1497' => 'cru', 'Ca_01755_v3' => 'car', 'Ca_01760_v3' => 'car', 'Ca_01761_v3' => 'car', 'Ca_10081_v3' => 'car', 'Ca_10389_v3' => 'car', 'CBR_g6304' => 'cbr', 'Cc02_g32430' => 'ccan', 'Cc05_g13210' => 'ccan', 'CDE02G0084' => 'cde', 'CDE05G0276' => 'cde', 'CDE05G2341' => 'cde', 'CDE11G0177' => 'cde', 'Cfa006525' => 'cfa', 'Ciclev10000138m.g' => 'ccl', 'Ciclev10007389m.g' => 'ccl', 'Ciclev10018690m.g' => 'ccl', 'CiPaw.07G012900' => 'cil', 'CiPaw.07G097800' => 'cil', 'CiPaw.08G101200' => 'cil', 'CiPaw.08G167900' => 'cil', 'CiPaw.11G183400' => 'cil', 'CiPaw.12G126300' => 'cil', 'ClCG03G016690' => 'cla', 'ClCG05G014790' => 'cla', 'ClCG09G006690' => 'cla', 'COL.COLO4_09156' => 'col', 'COL.COLO4_09563' => 'col', 'COL.COLO4_13556' => 'col', 'Cpa.g.sc84.121' => 'cpa', 'Cpa.g.sc9.141' => 'cpa', 'Cpa.g.sc97.73' => 'cpa', 'CsaV3_1G039320' => 'csa', 'CsaV3_3G022880' => 'csa', 'CsaV3_7G028450' => 'csa', 'CsaV3_UNG229010' => 'csa', 'CsaV3_UNG229020' => 'csa', 'CSS0010177' => 'camsi', 'CSS0012744' => 'camsi', 'CSS0016690' => 'camsi', 'CSS0021708' => 'camsi', 'CSS0026650' => 'camsi', 'CSS0039456' => 'camsi', 'CSS0040351' => 'camsi', 'CSS0042691' => 'camsi', 'DCAR_000309' => 'dca', 'DCAR_001934' => 'dca', 'DCAR_022522' => 'dca', 'DCAR_029450' => 'dca', 'Dinv03937' => 'din', 'Dinv11275' => 'din', 'Dinv22308' => 'din', 'Dinv22920' => 'din', 'Dinv32974' => 'din', 'Duzib138G1839' => 'dzi', 'Duzib177G0168' => 'dzi', 'Duzib211G0097' => 'dzi', 'Duzib213G0680' => 'dzi', 'Duzib268G1066' => 'dzi', 'ECA233G6059' => 'eca', 'ECA246G1276' => 'eca', 'ECA246G3242' => 'eca', 'ECA247G1588' => 'eca', 'EL10Ac4g07983' => 'bvu', 'EL10Ac4g09289' => 'bvu', 'Eucgr.B02027' => 'egr', 'Eucgr.F03423' => 'egr', 'Eucgr.H01605' => 'egr', 'FAN02G2273' => 'fan', 'FAN02G3686' => 'fan', 'FAN05G1651' => 'fan', 'FAN05G2935' => 'fan', 'FAN09G1386' => 'fan', 'FAN11G3615' => 'fan', 'FAN14G0612' => 'fan', 'FAN15G0286' => 'fan', 'FAN15G3740' => 'fan', 'FAN16G2991' => 'fan', 'FAN20G0526' => 'fan', 'FAN21G0746' => 'fan', 'FAN21G1944' => 'fan', 'FAN24G0632' => 'fan', 'FAN25G3568' => 'fan', 'FAN27G1000' => 'fan', 'FvH4_2g24310' => 'fve', 'FvH4_3g21770' => 'fve', 'FvH4_6g04980' => 'fve', 'Glyma.03G148700' => 'gma', 'Glyma.06G267000' => 'gma', 'Glyma.10G157700' => 'gma', 'Glyma.12G136000' => 'gma', 'Glyma.12G214600' => 'gma', 'Glyma.13G287000' => 'gma', 'Glyma.19G152000' => 'gma', 'Glyma.20G230851' => 'gma', 'Glyma.20G230900' => 'gma', 'Gohir.A01G074300' => 'ghi', 'Gohir.A11G261000' => 'ghi', 'Gohir.A11G280400' => 'ghi', 'Gohir.A12G007200' => 'ghi', 'Gohir.A13G172700' => 'ghi', 'Gohir.D01G060800' => 'ghi', 'Gohir.D11G271300' => 'ghi', 'Gohir.D11G290700' => 'ghi', 'Gohir.D12G006600' => 'ghi', 'Gohir.D13G178500' => 'ghi', 'Gorai.002G082200' => 'gra', 'Gorai.007G291800' => 'gra', 'Gorai.007G314600' => 'gra', 'Gorai.008G006700' => 'gra', 'Gorai.013G203700' => 'gra', 'GSVIVG01011044001' => 'vvi', 'GSVIVG01014601001' => 'vvi', 'GSVIVG01014602001' => 'vvi', 'GSVIVG01022020001' => 'vvi', 'HanXRQChr05g0159231' => 'han', 'HanXRQChr08g0233951' => 'han', 'HanXRQChr10g0283131' => 'han', 'HanXRQChr16g0512331' => 'han', 'Haze_04260' => 'cav', 'Haze_04791' => 'cav', 'Haze_09606' => 'cav', 'Haze_27762' => 'cav', 'Hma1.2p1_0257F.1_g104010' => 'hma', 'Hma1.2p1_0538F.1_g174370' => 'hma', 'HPP92_011812' => 'vpl', 'HPP92_015951' => 'vpl', 'Hund02138' => 'sun', 'Hund07027' => 'sun', 'Hund21674' => 'sun', 'Lalb_Chr03g0030151' => 'lal', 'Lalb_Chr03g0030161' => 'lal', 'Lalb_Chr06g0163231' => 'lal', 'Lalb_Chr06g0167841' => 'lal', 'Lalb_Chr14g0366091' => 'lal', 'Lalb_Chr19g0134731' => 'lal', 'Lalb_Chr22g0357051' => 'lal', 'Lj1C41T12' => 'lonja', 'Lj1C863G20' => 'lonja', 'Lj1g0020362' => 'lja', 'Lj3g0015626' => 'lja', 'Lj5g0002193' => 'lja', 'Lj8A165T111' => 'lonja', 'Lj9C678G11' => 'lonja', 'Lsat_1_v5_gn_5_37921' => 'lsa', 'Lsat_1_v5_gn_5_39040' => 'lsa', 'Lsat_1_v5_gn_5_5681' => 'lsa', 'Lsat_1_v5_gn_9_1741' => 'lsa', 'Manes.01G211900' => 'mes', 'Manes.03G122700' => 'mes', 'Manes.08G124500' => 'mes', 'Manes.09G161900' => 'mes', 'Manes.15G076800' => 'mes', 'Mapoly0006s0048' => 'mpo', 'MBI02_g18407_MAGBIO' => 'mbi', 'MBI18_g24130_MAGBIO' => 'mbi', 'MBI18_g28250_MAGBIO' => 'mbi', 'MBI19_g13520_MAGBIO' => 'mbi', 'MD01G1018400' => 'mdo', 'MD03G1089400' => 'mdo', 'MD03G1212200' => 'mdo', 'MD03G1272800' => 'mdo', 'MD04G1212000' => 'mdo', 'MD11G1227300' => 'mdo', 'MD11G1293800' => 'mdo', 'MD12G1226700' => 'mdo', 'Medtr1g082300' => 'mtr', 'Medtr1g089110' => 'mtr', 'Medtr2g082770' => 'mtr', 'MELO3C015358.2' => 'cme', 'MELO3C015877.2' => 'cme', 'MELO3C018126.2' => 'cme', 'Migut.D00247' => 'egut', 'Migut.H01859' => 'egut', 'Migut.N02132' => 'egut', 'MSTRG.12955' => 'ama', 'MSTRG.15168' => 'ama', 'MSTRG.17430' => 'ama', 'MSTRG.18204' => 'ama', 'MSTRG.21589' => 'ama', 'Nitab4.5_0000092g0040' => 'nta', 'Nitab4.5_0000245g0290' => 'nta', 'Nitab4.5_0000397g0080' => 'nta', 'Nitab4.5_0000749g0010' => 'nta', 'Nitab4.5_0001903g0120' => 'nta', 'Nitab4.5_0002238g0080' => 'nta', 'Nn1g03665' => 'nnu', 'Nn1g06996' => 'nnu', 'Nn3g21207' => 'nnu', 'Nn4g26109' => 'nnu', 'Oeu001450.1' => 'oeu', 'Oeu007627.1' => 'oeu', 'Oeu013855.1' => 'oeu', 'Oeu042914.1' => 'oeu', 'Oeu062620.4' => 'oeu', 'Os01g0786900' => 'osa', 'Os05g0405900' => 'osa', 'Peaxi162Scf00434g00727' => 'pax', 'Peaxi162Scf01086g00110' => 'pax', 'PGR031G2196' => 'pgr', 'PGR083G0549' => 'pgr', 'PGR119G2390' => 'pgr', 'PGSC0003DMG400019227' => 'stu', 'PGSC0003DMG400025620' => 'stu', 'PGSC0003DMG400028594' => 'stu', 'Phvul.001G146700' => 'pvu', 'Phvul.005G091300' => 'pvu', 'Phvul.007G183100' => 'pvu', 'Phvul.011G140900' => 'pvu', 'Potri.001G417000' => 'ptr', 'Potri.005G040300' => 'ptr', 'Potri.011G132700' => 'ptr', 'Potri.013G028200' => 'ptr', 'Pp3c20_18810' => 'ppa', 'Pp3c23_8190' => 'ppa', 'Pp3c24_5800' => 'ppa', 'Pp3c8_5760' => 'ppa', 'Prupe.4G201900' => 'ppe', 'Prupe.6G332400' => 'ppe', 'Prupe.8G249300' => 'ppe', 'Psat5g249880' => 'psa', 'Psat6g148560' => 'psa', 'Psat6g169560' => 'psa', 'PSO017G6374' => 'pso', 'PSO170G4830' => 'pso', 'PSO210G2393' => 'pso', 'PSO541G0622' => 'pso', 'PSO675G0598' => 'pso', 'PSO675G2225' => 'pso', 'PSO832G0916' => 'pso', 'QL03p003637' => 'qlo', 'QL08p013394' => 'qlo', 'QL08p013554' => 'qlo', 'QL12p023119' => 'qlo', 'RcHm_v2.0_Chr3g0453491' => 'rch', 'RcHm_v2.0_Chr5g0037241' => 'rch', 'RcHm_v2.0_Chr6g0292181' => 'rch', 'Rhsim01G0278400' => 'rsi', 'Rhsim07G0178500' => 'rsi', 'RhsimUnG0253300' => 'rsi', 'Sabra05G0039300' => 'sbr', 'Sabra11G0119500' => 'sbr', 'Sabra13G0028700' => 'sbr', 'Sabra16G0283400' => 'sbr', 'SalBow3G0971' => 'sbo', 'SalBow7G2055' => 'sbo', 'Sc03g0009120' => 'sci', 'Sc09g0003620' => 'sci', 'Sed0016223' => 'sed', 'Sed0017837' => 'sed', 'Sed0020701' => 'sed', 'Sed0024597' => 'sed', 'Sed0024628' => 'sed', 'SEGI_02236' => 'sgi', 'SEGI_08841' => 'sgi', 'SEGI_29639' => 'sgi', 'SGA_v2.0_scaffold11G05778' => 'sas', 'SGA_v2.0_scaffold1G00433' => 'sas', 'SHI18222' => 'shi', 'SMO146G0123' => 'smo', 'Solyc01g098430.3' => 'sly', 'Solyc07g064060.3' => 'sly', 'Solyc12g005230.3' => 'sly', 'Sopen01g041990' => 'spe', 'Sopen07g032200' => 'spe', 'Sopen12g001220' => 'spe', 'Sp1g02380' => 'spa', 'Sp6g16670' => 'spa', 'SpUN0002_0210' => 'spa', 'TAR362G0210' => 'tar', 'TAR365G1201' => 'tar', 'TAR624G0744' => 'tar', 'TAR626G1457' => 'tar', 'TAR636G1465' => 'tar', 'THA.LOC104801208' => 'tha', 'THA.LOC104805847' => 'tha', 'THA.LOC104813412' => 'tha', 'THA.LOC104821048' => 'tha', 'Thecc.01G286900' => 'tca', 'Thecc.05G298200' => 'tca', 'Thecc.07G054500' => 'tca', 'Thhalv10006706m.g' => 'esa', 'Thhalv10012811m.g' => 'esa', 'Thhalv10023243m.g' => 'esa', 'TPR.G16922' => 'tpr', 'TPR.G2713' => 'tpr', 'TPR.G36798' => 'tpr', 'TWI12G1213' => 'twi', 'TWI36G1034' => 'twi', 'TWI38G1832' => 'twi', 'TWI39G1140' => 'twi', 'unitig_0.g1189' => 'ugi', 'unitig_0.g638' => 'ugi', 'unitig_26.g9970' => 'ugi', 'unitig_52.g17358' => 'ugi', 'unitig_61.g26320' => 'ugi', 'vmacro05043' => 'vma', 'vmacro09748' => 'vma', 'vmacro14950' => 'vma', 'VMungo0720G2593' => 'vmu', 'VMungo1080G1382' => 'vmu', 'VMungo1127G1627' => 'vmu', 'VMungo1383G3368' => 'vmu', 'Zm00001eb151200' => 'zma', 'Zm00001eb287690' => 'zma', 'Zm00001eb349780' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D001520', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D001520' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D001520', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '394', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001520' ) ), 'genes' => array( 'A01p27110' => 'bna', 'A02p10070' => 'bna', 'A03p14440' => 'bna', 'A09p19350' => 'bna', 'A10p01930' => 'bna', 'A10p11990' => 'bna', 'Aa31LG1G9180' => 'aar', 'Aa31LG1G9190' => 'aar', 'Aa31LG2G12090' => 'aar', 'Aa31LG3G10640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2865' => 'aag', 'Actinidia05734' => 'ach', 'Actinidia21084' => 'ach', 'Actinidia24864' => 'ach', 'Actinidia30897' => 'ach', 'Actinidia35314' => 'ach', 'Actinidia38627' => 'ach', 'Ah.04g159870' => 'amhyb', 'Ah.06g183070' => 'amhyb', 'Ah.06g190270' => 'amhyb', 'AL1G12910' => 'aly', 'AL1G65130' => 'aly', 'AL8G30150' => 'aly', 'Aqoxy2G03172' => 'aox', 'Aqoxy4G02087' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4AME8L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2FWCT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EM1RFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP0QNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9BD7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8YXAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6HGF1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0EQV8' => 'arhy', 'AT1G03380' => 'ath', 'AT1G54710' => 'ath', 'AT5G54730' => 'ath', 'ATR0005G001' => 'atr', 'ATR0580G230' => 'atr', 'ATR0618G181' => 'atr', 'ATR1088G016' => 'atr', 'Atru.chr2.3205' => 'acertr', 'Atru.chr2.524' => 'acertr', 'Atru.chr5.1315' => 'acertr', 'Atru.chr5.1316' => 'acertr', 'Atru.chr5.1317' => 'acertr', 'AUR62000848' => 'cqu', 'AUR62005127' => 'cqu', 'AUR62015639' => 'cqu', 'AUR62029232' => 'cqu', 'BcaB01g04322' => 'bca', 'BcaB04g20140' => 'bca', 'BcaB05g22155' => 'bca', 'BcaB07g31100' => 'bca', 'BcaB08g35831' => 'bca', 'BcaC01g06324' => 'bca', 'BcaC03g14293' => 'bca', 'BcaC04g20308' => 'bca', 'BcaC04g22028' => 'bca', 'BcaC05g24533' => 'bca', 'BcaC09g49609' => 'bca', 'BolC1t03423H' => 'bol', 'BolC2t07777H' => 'bol', 'BolC3t14101H' => 'bol', 'BolC5t28968H' => 'bol', 'BolC9t55356H' => 'bol', 'BolC9t57387H' => 'bol', 'BraA01t02845Z' => 'bra', 'BraA02t06076Z' => 'bra', 'BraA03t10740Z' => 'bra', 'BraA09t37552Z' => 'bra', 'BraA10t42466Z' => 'bra', 'BraA10t43301Z' => 'bra', 'C01p34530' => 'bna', 'C02p16710' => 'bna', 'C03p16810' => 'bna', 'C03p16830' => 'bna', 'C05p01870' => 'bna', 'C09p24390' => 'bna', 'C09p45150' => 'bna', 'CAN.G134.233' => 'can', 'CAN.G337.152' => 'can', 'CANSAT11G2547' => 'cansat', 'CANSAT54G2580' => 'cansat', 'CARHR002760' => 'chi', 'CARHR055840' => 'chi', 'CARHR268040' => 'chi', 'Carub.0001s0251' => 'cru', 'Carub.0002s0889' => 'cru', 'Carub.0008s1497' => 'cru', 'Ca_01755_v3' => 'car', 'Ca_01760_v3' => 'car', 'Ca_01761_v3' => 'car', 'Ca_10081_v3' => 'car', 'Ca_10389_v3' => 'car', 'CBR_g6304' => 'cbr', 'Cc02_g32430' => 'ccan', 'Cc05_g13210' => 'ccan', 'CDE02G0084' => 'cde', 'CDE05G0276' => 'cde', 'CDE05G2341' => 'cde', 'CDE11G0177' => 'cde', 'Cfa006525' => 'cfa', 'Ciclev10000138m.g' => 'ccl', 'Ciclev10007389m.g' => 'ccl', 'Ciclev10018690m.g' => 'ccl', 'CiPaw.07G012900' => 'cil', 'CiPaw.07G097800' => 'cil', 'CiPaw.08G101200' => 'cil', 'CiPaw.08G167900' => 'cil', 'CiPaw.11G183400' => 'cil', 'CiPaw.12G126300' => 'cil', 'ClCG03G016690' => 'cla', 'ClCG05G014790' => 'cla', 'ClCG09G006690' => 'cla', 'COL.COLO4_09156' => 'col', 'COL.COLO4_09563' => 'col', 'COL.COLO4_13556' => 'col', 'Cpa.g.sc84.121' => 'cpa', 'Cpa.g.sc9.141' => 'cpa', 'Cpa.g.sc97.73' => 'cpa', 'CsaV3_1G039320' => 'csa', 'CsaV3_3G022880' => 'csa', 'CsaV3_7G028450' => 'csa', 'CsaV3_UNG229010' => 'csa', 'CsaV3_UNG229020' => 'csa', 'CSS0010177' => 'camsi', 'CSS0012744' => 'camsi', 'CSS0016690' => 'camsi', 'CSS0021708' => 'camsi', 'CSS0026650' => 'camsi', 'CSS0039456' => 'camsi', 'CSS0040351' => 'camsi', 'CSS0042691' => 'camsi', 'DCAR_000309' => 'dca', 'DCAR_001934' => 'dca', 'DCAR_022522' => 'dca', 'DCAR_029450' => 'dca', 'Dinv03937' => 'din', 'Dinv11275' => 'din', 'Dinv22308' => 'din', 'Dinv22920' => 'din', 'Dinv32974' => 'din', 'Duzib138G1839' => 'dzi', 'Duzib177G0168' => 'dzi', 'Duzib211G0097' => 'dzi', 'Duzib213G0680' => 'dzi', 'Duzib268G1066' => 'dzi', 'ECA233G6059' => 'eca', 'ECA246G1276' => 'eca', 'ECA246G3242' => 'eca', 'ECA247G1588' => 'eca', 'EL10Ac4g07983' => 'bvu', 'EL10Ac4g09289' => 'bvu', 'Eucgr.B02027' => 'egr', 'Eucgr.F03423' => 'egr', 'Eucgr.H01605' => 'egr', 'FAN02G2273' => 'fan', 'FAN02G3686' => 'fan', 'FAN05G1651' => 'fan', 'FAN05G2935' => 'fan', 'FAN09G1386' => 'fan', 'FAN11G3615' => 'fan', 'FAN14G0612' => 'fan', 'FAN15G0286' => 'fan', 'FAN15G3740' => 'fan', 'FAN16G2991' => 'fan', 'FAN20G0526' => 'fan', 'FAN21G0746' => 'fan', 'FAN21G1944' => 'fan', 'FAN24G0632' => 'fan', 'FAN25G3568' => 'fan', 'FAN27G1000' => 'fan', 'FvH4_2g24310' => 'fve', 'FvH4_3g21770' => 'fve', 'FvH4_6g04980' => 'fve', 'Glyma.03G148700' => 'gma', 'Glyma.06G267000' => 'gma', 'Glyma.10G157700' => 'gma', 'Glyma.12G136000' => 'gma', 'Glyma.12G214600' => 'gma', 'Glyma.13G287000' => 'gma', 'Glyma.19G152000' => 'gma', 'Glyma.20G230851' => 'gma', 'Glyma.20G230900' => 'gma', 'Gohir.A01G074300' => 'ghi', 'Gohir.A11G261000' => 'ghi', 'Gohir.A11G280400' => 'ghi', 'Gohir.A12G007200' => 'ghi', 'Gohir.A13G172700' => 'ghi', 'Gohir.D01G060800' => 'ghi', 'Gohir.D11G271300' => 'ghi', 'Gohir.D11G290700' => 'ghi', 'Gohir.D12G006600' => 'ghi', 'Gohir.D13G178500' => 'ghi', 'Gorai.002G082200' => 'gra', 'Gorai.007G291800' => 'gra', 'Gorai.007G314600' => 'gra', 'Gorai.008G006700' => 'gra', 'Gorai.013G203700' => 'gra', 'GSVIVG01011044001' => 'vvi', 'GSVIVG01014601001' => 'vvi', 'GSVIVG01014602001' => 'vvi', 'GSVIVG01022020001' => 'vvi', 'HanXRQChr05g0159231' => 'han', 'HanXRQChr08g0233951' => 'han', 'HanXRQChr10g0283131' => 'han', 'HanXRQChr16g0512331' => 'han', 'Haze_04260' => 'cav', 'Haze_04791' => 'cav', 'Haze_09606' => 'cav', 'Haze_27762' => 'cav', 'Hma1.2p1_0257F.1_g104010' => 'hma', 'Hma1.2p1_0538F.1_g174370' => 'hma', 'HPP92_011812' => 'vpl', 'HPP92_015951' => 'vpl', 'Hund02138' => 'sun', 'Hund07027' => 'sun', 'Hund21674' => 'sun', 'Lalb_Chr03g0030151' => 'lal', 'Lalb_Chr03g0030161' => 'lal', 'Lalb_Chr06g0163231' => 'lal', 'Lalb_Chr06g0167841' => 'lal', 'Lalb_Chr14g0366091' => 'lal', 'Lalb_Chr19g0134731' => 'lal', 'Lalb_Chr22g0357051' => 'lal', 'Lj1C41T12' => 'lonja', 'Lj1C863G20' => 'lonja', 'Lj1g0020362' => 'lja', 'Lj3g0015626' => 'lja', 'Lj5g0002193' => 'lja', 'Lj8A165T111' => 'lonja', 'Lj9C678G11' => 'lonja', 'Lsat_1_v5_gn_5_37921' => 'lsa', 'Lsat_1_v5_gn_5_39040' => 'lsa', 'Lsat_1_v5_gn_5_5681' => 'lsa', 'Lsat_1_v5_gn_9_1741' => 'lsa', 'Manes.01G211900' => 'mes', 'Manes.03G122700' => 'mes', 'Manes.08G124500' => 'mes', 'Manes.09G161900' => 'mes', 'Manes.15G076800' => 'mes', 'Mapoly0006s0048' => 'mpo', 'MBI02_g18407_MAGBIO' => 'mbi', 'MBI18_g24130_MAGBIO' => 'mbi', 'MBI18_g28250_MAGBIO' => 'mbi', 'MBI19_g13520_MAGBIO' => 'mbi', 'MD01G1018400' => 'mdo', 'MD03G1089400' => 'mdo', 'MD03G1212200' => 'mdo', 'MD03G1272800' => 'mdo', 'MD04G1212000' => 'mdo', 'MD11G1227300' => 'mdo', 'MD11G1293800' => 'mdo', 'MD12G1226700' => 'mdo', 'Medtr1g082300' => 'mtr', 'Medtr1g089110' => 'mtr', 'Medtr2g082770' => 'mtr', 'MELO3C015358.2' => 'cme', 'MELO3C015877.2' => 'cme', 'MELO3C018126.2' => 'cme', 'Migut.D00247' => 'egut', 'Migut.H01859' => 'egut', 'Migut.N02132' => 'egut', 'MSTRG.12955' => 'ama', 'MSTRG.15168' => 'ama', 'MSTRG.17430' => 'ama', 'MSTRG.18204' => 'ama', 'MSTRG.21589' => 'ama', 'Nitab4.5_0000092g0040' => 'nta', 'Nitab4.5_0000245g0290' => 'nta', 'Nitab4.5_0000397g0080' => 'nta', 'Nitab4.5_0000749g0010' => 'nta', 'Nitab4.5_0001903g0120' => 'nta', 'Nitab4.5_0002238g0080' => 'nta', 'Nn1g03665' => 'nnu', 'Nn1g06996' => 'nnu', 'Nn3g21207' => 'nnu', 'Nn4g26109' => 'nnu', 'Oeu001450.1' => 'oeu', 'Oeu007627.1' => 'oeu', 'Oeu013855.1' => 'oeu', 'Oeu042914.1' => 'oeu', 'Oeu062620.4' => 'oeu', 'Os01g0786900' => 'osa', 'Os05g0405900' => 'osa', 'Peaxi162Scf00434g00727' => 'pax', 'Peaxi162Scf01086g00110' => 'pax', 'PGR031G2196' => 'pgr', 'PGR083G0549' => 'pgr', 'PGR119G2390' => 'pgr', 'PGSC0003DMG400019227' => 'stu', 'PGSC0003DMG400025620' => 'stu', 'PGSC0003DMG400028594' => 'stu', 'Phvul.001G146700' => 'pvu', 'Phvul.005G091300' => 'pvu', 'Phvul.007G183100' => 'pvu', 'Phvul.011G140900' => 'pvu', 'Potri.001G417000' => 'ptr', 'Potri.005G040300' => 'ptr', 'Potri.011G132700' => 'ptr', 'Potri.013G028200' => 'ptr', 'Pp3c20_18810' => 'ppa', 'Pp3c23_8190' => 'ppa', 'Pp3c24_5800' => 'ppa', 'Pp3c8_5760' => 'ppa', 'Prupe.4G201900' => 'ppe', 'Prupe.6G332400' => 'ppe', 'Prupe.8G249300' => 'ppe', 'Psat5g249880' => 'psa', 'Psat6g148560' => 'psa', 'Psat6g169560' => 'psa', 'PSO017G6374' => 'pso', 'PSO170G4830' => 'pso', 'PSO210G2393' => 'pso', 'PSO541G0622' => 'pso', 'PSO675G0598' => 'pso', 'PSO675G2225' => 'pso', 'PSO832G0916' => 'pso', 'QL03p003637' => 'qlo', 'QL08p013394' => 'qlo', 'QL08p013554' => 'qlo', 'QL12p023119' => 'qlo', 'RcHm_v2.0_Chr3g0453491' => 'rch', 'RcHm_v2.0_Chr5g0037241' => 'rch', 'RcHm_v2.0_Chr6g0292181' => 'rch', 'Rhsim01G0278400' => 'rsi', 'Rhsim07G0178500' => 'rsi', 'RhsimUnG0253300' => 'rsi', 'Sabra05G0039300' => 'sbr', 'Sabra11G0119500' => 'sbr', 'Sabra13G0028700' => 'sbr', 'Sabra16G0283400' => 'sbr', 'SalBow3G0971' => 'sbo', 'SalBow7G2055' => 'sbo', 'Sc03g0009120' => 'sci', 'Sc09g0003620' => 'sci', 'Sed0016223' => 'sed', 'Sed0017837' => 'sed', 'Sed0020701' => 'sed', 'Sed0024597' => 'sed', 'Sed0024628' => 'sed', 'SEGI_02236' => 'sgi', 'SEGI_08841' => 'sgi', 'SEGI_29639' => 'sgi', 'SGA_v2.0_scaffold11G05778' => 'sas', 'SGA_v2.0_scaffold1G00433' => 'sas', 'SHI18222' => 'shi', 'SMO146G0123' => 'smo', 'Solyc01g098430.3' => 'sly', 'Solyc07g064060.3' => 'sly', 'Solyc12g005230.3' => 'sly', 'Sopen01g041990' => 'spe', 'Sopen07g032200' => 'spe', 'Sopen12g001220' => 'spe', 'Sp1g02380' => 'spa', 'Sp6g16670' => 'spa', 'SpUN0002_0210' => 'spa', 'TAR362G0210' => 'tar', 'TAR365G1201' => 'tar', 'TAR624G0744' => 'tar', 'TAR626G1457' => 'tar', 'TAR636G1465' => 'tar', 'THA.LOC104801208' => 'tha', 'THA.LOC104805847' => 'tha', 'THA.LOC104813412' => 'tha', 'THA.LOC104821048' => 'tha', 'Thecc.01G286900' => 'tca', 'Thecc.05G298200' => 'tca', 'Thecc.07G054500' => 'tca', 'Thhalv10006706m.g' => 'esa', 'Thhalv10012811m.g' => 'esa', 'Thhalv10023243m.g' => 'esa', 'TPR.G16922' => 'tpr', 'TPR.G2713' => 'tpr', 'TPR.G36798' => 'tpr', 'TWI12G1213' => 'twi', 'TWI36G1034' => 'twi', 'TWI38G1832' => 'twi', 'TWI39G1140' => 'twi', 'unitig_0.g1189' => 'ugi', 'unitig_0.g638' => 'ugi', 'unitig_26.g9970' => 'ugi', 'unitig_52.g17358' => 'ugi', 'unitig_61.g26320' => 'ugi', 'vmacro05043' => 'vma', 'vmacro09748' => 'vma', 'vmacro14950' => 'vma', 'VMungo0720G2593' => 'vmu', 'VMungo1080G1382' => 'vmu', 'VMungo1127G1627' => 'vmu', 'VMungo1383G3368' => 'vmu', 'Zm00001eb151200' => 'zma', 'Zm00001eb287690' => 'zma', 'Zm00001eb349780' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D001520' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D001520' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D001520' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001520' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151