Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D001454', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '404', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p41730' => 'bna', 'A06p28470' => 'bna', 'Aa31LG11G1670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2550' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2551' => 'aag', 'Actinidia18287' => 'ach', 'Actinidia25508' => 'ach', 'Ah.02g114520' => 'amhyb', 'AL8G38580' => 'aly', 'arahy.Tifrunner.gnm1.ann1.05PZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0KCS9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0L3IFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22T31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.26VLVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z06T4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JWJ0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5UJZ6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KNN82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VD73D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAI5H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA0H5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G83ENS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKN5US' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IB48BU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDIH96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME8Z3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KK0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAUB69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL6XLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM4CKL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DYAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR5QKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSR2Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1W2M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZV0AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y24I4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YULU3C' => 'arhy', 'AT5G61820' => 'ath', 'ATR0582G142' => 'atr', 'ATR0582G262' => 'atr', 'ATR0582G326' => 'atr', 'ATR0582G349' => 'atr', 'Atru.chr6.1941' => 'acertr', 'AUR62032204' => 'cqu', 'AUR62036973' => 'cqu', 'AUR62043381' => 'cqu', 'BcaB02g09604' => 'bca', 'BcaB07g29819' => 'bca', 'BcaC01g02434' => 'bca', 'BcaC01g02435' => 'bca', 'BcaC01g02436' => 'bca', 'BcaC01g02438' => 'bca', 'BcaC03g18098' => 'bca', 'BolC2t12223H' => 'bol', 'BolC3t18782H' => 'bol', 'BolC3t18788H' => 'bol', 'BolC3t18789H' => 'bol', 'BraA02t09113Z' => 'bra', 'BraA06t25791Z' => 'bra', 'C02p61650' => 'bna', 'C03p65290' => 'bna', 'C03p65330' => 'bna', 'C03p65340' => 'bna', 'CAN.G1089.12' => 'can', 'CAN.G1089.13' => 'can', 'CAN.G313.16' => 'can', 'CAN.G416.58' => 'can', 'CAN.G416.59' => 'can', 'CAN.G416.60' => 'can', 'CAN.G416.61' => 'can', 'CAN.G47.3' => 'can', 'CAN.G758.11' => 'can', 'CANSAT56G0376' => 'cansat', 'CANSAT56G1144' => 'cansat', 'CANSAT56G1598' => 'cansat', 'CARHR275580' => 'chi', 'Carub.0008s2251' => 'cru', 'Carub.0008s2252' => 'cru', 'Ca_03348_v3' => 'car', 'Ca_11099_v3' => 'car', 'Ca_12129_v3' => 'car', 'Ca_18289_v3' => 'car', 'Ca_20127_v3' => 'car', 'Ca_20204_v3' => 'car', 'Ca_23126_v3' => 'car', 'Ca_25256_v3' => 'car', 'Cc04_g05720' => 'ccan', 'Cc04_g05730' => 'ccan', 'Ciclev10031458m.g' => 'ccl', 'Ciclev10031461m.g' => 'ccl', 'CiPaw.01G033000' => 'cil', 'CiPaw.01G033200' => 'cil', 'CiPaw.01G033400' => 'cil', 'CiPaw.01G033600' => 'cil', 'ClCG02G007420' => 'cla', 'ClCG06G014510' => 'cla', 'ClCG06G014570' => 'cla', 'COL.COLO4_37273' => 'col', 'Cpa.g.sc13.188' => 'cpa', 'CsaV3_1G004040' => 'csa', 'CsaV3_1G004050' => 'csa', 'CsaV3_1G004060' => 'csa', 'CsaV3_7G007480' => 'csa', 'CsaV3_7G007490' => 'csa', 'CSS0010069' => 'camsi', 'CSS0013606' => 'camsi', 'DCAR_009629' => 'dca', 'DCAR_009630' => 'dca', 'DCAR_021392' => 'dca', 'DCAR_021557' => 'dca', 'Dinv13705' => 'din', 'Dinv13706' => 'din', 'Dinv23238' => 'din', 'Duzib068G0886' => 'dzi', 'Duzib084G0249' => 'dzi', 'Duzib084G1374' => 'dzi', 'ECA232G2039' => 'eca', 'ECA232G2628' => 'eca', 'ECA232G4705' => 'eca', 'EL10Ac5g11267' => 'bvu', 'Eucgr.K02186' => 'egr', 'FAN04G1932' => 'fan', 'FAN04G2911' => 'fan', 'FAN08G1324' => 'fan', 'FAN13G0164' => 'fan', 'FAN13G0254' => 'fan', 'FAN18G1321' => 'fan', 'FvH4_5g09784' => 'fve', 'FvH4_5g09790' => 'fve', 'Glyma.01G121245' => 'gma', 'Glyma.01G121263' => 'gma', 'Glyma.01G121272' => 'gma', 'Glyma.03G057700' => 'gma', 'Glyma.03G071800' => 'gma', 'Glyma.03G071900' => 'gma', 'Glyma.03G075600' => 'gma', 'Glyma.03G078900' => 'gma', 'Glyma.03G115700' => 'gma', 'Glyma.04G118000' => 'gma', 'Glyma.04G118100' => 'gma', 'Glyma.04G118300' => 'gma', 'Glyma.04G118400' => 'gma', 'Glyma.04G143900' => 'gma', 'Glyma.04G144000' => 'gma', 'Glyma.04G144100' => 'gma', 'Glyma.04G144200' => 'gma', 'Glyma.05G126700' => 'gma', 'Glyma.05G126750' => 'gma', 'Glyma.05G126800' => 'gma', 'Glyma.05G126900' => 'gma', 'Glyma.08G081700' => 'gma', 'Glyma.08G081801' => 'gma', 'Glyma.09G025200' => 'gma', 'Glyma.15G131300' => 'gma', 'Glyma.15G131400' => 'gma', 'Glyma.U008700' => 'gma', 'Gohir.A07G046200' => 'ghi', 'Gohir.A12G194200' => 'ghi', 'Gohir.A12G194300' => 'ghi', 'Gohir.D07G050500' => 'ghi', 'Gohir.D12G196700' => 'ghi', 'Gohir.D12G196800' => 'ghi', 'Gorai.001G053600' => 'gra', 'Gorai.008G211300' => 'gra', 'Gorai.008G211400' => 'gra', 'GSVIVG01008668001' => 'vvi', 'HanXRQChr03g0061641' => 'han', 'HanXRQChr09g0273761' => 'han', 'HanXRQChr09g0273771' => 'han', 'HanXRQChr09g0274011' => 'han', 'HanXRQChr09g0274391' => 'han', 'HanXRQChr09g0274401' => 'han', 'Haze_15134' => 'cav', 'Hma1.2p1_0452F.1_g155860' => 'hma', 'Hma1.2p1_0452F.1_g155870' => 'hma', 'Hma1.2p1_1242F.1_g269910' => 'hma', 'Hma1.2p1_1242F.1_g269920' => 'hma', 'HPP92_000324' => 'vpl', 'HPP92_025301' => 'vpl', 'HPP92_025302' => 'vpl', 'HPP92_025310' => 'vpl', 'Hund10011' => 'sun', 'Hund10022' => 'sun', 'Lalb_Chr07g0188971' => 'lal', 'Lalb_Chr07g0188991' => 'lal', 'Lalb_Chr12g0203891' => 'lal', 'Lalb_Chr12g0203901' => 'lal', 'Lalb_Chr12g0208811' => 'lal', 'Lalb_Chr18g0058041' => 'lal', 'Lalb_Chr19g0126631' => 'lal', 'Lj1g0015663' => 'lja', 'Lj3g0000025' => 'lja', 'Lj3g0007615' => 'lja', 'Lj3g0013305' => 'lja', 'Lj3g0017932' => 'lja', 'Lj3g0018933' => 'lja', 'Lj3g0020835' => 'lja', 'Lj4g0016919' => 'lja', 'Lj4g0019194' => 'lja', 'Lj5A85T114' => 'lonja', 'Lj5g0019809' => 'lja', 'Lj5g0025155' => 'lja', 'Lj6g0019617' => 'lja', 'Lj9A488T62' => 'lonja', 'Lsat_1_v5_gn_4_84201' => 'lsa', 'Lsat_1_v5_gn_4_84241' => 'lsa', 'Lsat_1_v5_gn_4_84261' => 'lsa', 'Manes.06G127700' => 'mes', 'Mapoly0002s0344' => 'mpo', 'Mapoly0002s0345' => 'mpo', 'Mapoly0002s0346' => 'mpo', 'Mapoly0005s0246' => 'mpo', 'Mapoly0066s0047' => 'mpo', 'MBI07_g13948_MAGBIO' => 'mbi', 'MBI07_g13949_MAGBIO' => 'mbi', 'MBI07_g13950_MAGBIO' => 'mbi', 'MBI07_g13951_MAGBIO' => 'mbi', 'MBI07_g13952_MAGBIO' => 'mbi', 'MBI07_g13954_MAGBIO' => 'mbi', 'MD00G1075600' => 'mdo', 'MD00G1075700' => 'mdo', 'MD00G1129500' => 'mdo', 'MD14G1145300' => 'mdo', 'MD14G1145500' => 'mdo', 'MD14G1145600' => 'mdo', 'Medtr0083s0100' => 'mtr', 'Medtr1g035220' => 'mtr', 'Medtr1g052640' => 'mtr', 'Medtr1g062750' => 'mtr', 'Medtr2g030460' => 'mtr', 'Medtr2g030470' => 'mtr', 'Medtr2g030480' => 'mtr', 'Medtr3g035040' => 'mtr', 'Medtr4g094548' => 'mtr', 'Medtr4g094550' => 'mtr', 'Medtr4g094555' => 'mtr', 'Medtr4g094560' => 'mtr', 'Medtr4g094562' => 'mtr', 'Medtr4g094565' => 'mtr', 'Medtr4g094570' => 'mtr', 'Medtr6g048310' => 'mtr', 'Medtr6g048350' => 'mtr', 'Medtr6g089930' => 'mtr', 'Medtr6g090090' => 'mtr', 'Medtr8g039300' => 'mtr', 'MELO3C017327.2' => 'cme', 'MELO3C017328.2' => 'cme', 'MELO3C017329.2' => 'cme', 'MELO3C017331.2' => 'cme', 'MELO3C017332.2' => 'cme', 'MELO3C018553.2' => 'cme', 'Migut.D01172' => 'egut', 'Migut.I00660' => 'egut', 'MSTRG.11203' => 'ama', 'MSTRG.9378' => 'ama', 'Nitab4.5_0001614g0010' => 'nta', 'Nitab4.5_0002540g0040' => 'nta', 'Nitab4.5_0003278g0020' => 'nta', 'Nitab4.5_0007345g0030' => 'nta', 'Nitab4.5_0008229g0010' => 'nta', 'Nitab4.5_0014513g0030' => 'nta', 'Nn1g02121' => 'nnu', 'Oeu046598.1' => 'oeu', 'Oeu051181.1' => 'oeu', 'Os08g0538600' => 'osa', 'Peaxi162Scf00207g00232' => 'pax', 'Peaxi162Scf00628g00076' => 'pax', 'Peaxi162Scf00835g00326' => 'pax', 'PGR102G1961' => 'pgr', 'PGR102G2003' => 'pgr', 'PGSC0003DMG400014468' => 'stu', 'PGSC0003DMG400014470' => 'stu', 'PGSC0003DMG400020037' => 'stu', 'Phvul.002G197800' => 'pvu', 'Phvul.006G127300' => 'pvu', 'Phvul.006G127400' => 'pvu', 'Phvul.009G165400' => 'pvu', 'Phvul.010G000800' => 'pvu', 'Phvul.010G017500' => 'pvu', 'Phvul.010G017800' => 'pvu', 'Phvul.010G017900' => 'pvu', 'Phvul.010G018100' => 'pvu', 'Phvul.010G022300' => 'pvu', 'Phvul.010G022500' => 'pvu', 'Phvul.010G035300' => 'pvu', 'Phvul.010G035400' => 'pvu', 'Phvul.010G035700' => 'pvu', 'Phvul.011G142100' => 'pvu', 'Potri.012G110300' => 'ptr', 'Potri.012G110600' => 'ptr', 'Potri.015G108500' => 'ptr', 'Potri.015G108600' => 'ptr', 'Potri.015G108700' => 'ptr', 'Potri.015G108800' => 'ptr', 'Pp3c10_17760' => 'ppa', 'Pp3c19_20840' => 'ppa', 'Pp3c6_7090' => 'ppa', 'Prupe.5G139900' => 'ppe', 'Psat1g166880' => 'psa', 'Psat7g092640' => 'psa', 'PSO170G0793' => 'pso', 'PSO455G0186' => 'pso', 'PSO675G1950' => 'pso', 'PSO732G0166' => 'pso', 'QL10p000231' => 'qlo', 'QL10p000238' => 'qlo', 'QL10p000256' => 'qlo', 'QL10p000264' => 'qlo', 'RcHm_v2.0_Chr1g0356321' => 'rch', 'RcHm_v2.0_Chr1g0356331' => 'rch', 'RcHm_v2.0_Chr4g0410211' => 'rch', 'RcHm_v2.0_Chr7g0188461' => 'rch', 'RcHm_v2.0_Chr7g0188471' => 'rch', 'Rhsim08G0199200' => 'rsi', 'Rhsim08G0199300' => 'rsi', 'Rhsim08G0199400' => 'rsi', 'Sabra12G0080300' => 'sbr', 'Sabra12G0080400' => 'sbr', 'Sabra15G0128700' => 'sbr', 'Sabra15G0128800' => 'sbr', 'Sabra15G0128900' => 'sbr', 'Sabra15G0131000' => 'sbr', 'Sabra15G0131100' => 'sbr', 'SalBow1G3989' => 'sbo', 'SalBow7G2038' => 'sbo', 'Sc20g0007430' => 'sci', 'Sc20g0007450' => 'sci', 'Sed0006436' => 'sed', 'Sed0010042' => 'sed', 'Sed0020427' => 'sed', 'Sed0023120' => 'sed', 'SEGI_10022' => 'sgi', 'SEGI_18198' => 'sgi', 'SEGI_20435' => 'sgi', 'SEGI_21186' => 'sgi', 'SEGI_28934' => 'sgi', 'SEGI_36732' => 'sgi', 'SGA_v2.0_scaffold37G14668' => 'sas', 'SMO230G0101' => 'smo', 'SMO367G0006' => 'smo', 'SMO367G0266' => 'smo', 'SMO367G0341' => 'smo', 'SMO367G0697' => 'smo', 'Solyc06g068730.1' => 'sly', 'Solyc12g042380.2' => 'sly', 'Sopen06g026010' => 'spe', 'Sopen12g021330' => 'spe', 'Sp2g25020' => 'spa', 'TAR371G0624' => 'tar', 'THA.LOC104818287' => 'tha', 'Thecc.03G142200' => 'tca', 'Thhalv10004123m.g' => 'esa', 'Thhalv10004141m.g' => 'esa', 'TPR.G10843' => 'tpr', 'TPR.G11062' => 'tpr', 'TPR.G11371' => 'tpr', 'TPR.G11459' => 'tpr', 'TPR.G19656' => 'tpr', 'TPR.G20481' => 'tpr', 'TPR.G20841' => 'tpr', 'TPR.G22924' => 'tpr', 'TPR.G22925' => 'tpr', 'TPR.G26351' => 'tpr', 'TPR.G26353' => 'tpr', 'TPR.G28448' => 'tpr', 'TPR.G28747' => 'tpr', 'TPR.G29095' => 'tpr', 'TPR.G29101' => 'tpr', 'TPR.G29925' => 'tpr', 'TPR.G30373' => 'tpr', 'TPR.G30382' => 'tpr', 'TPR.G30384' => 'tpr', 'TPR.G30385' => 'tpr', 'TPR.G31363' => 'tpr', 'TPR.G31413' => 'tpr', 'TPR.G35052' => 'tpr', 'TPR.G36540' => 'tpr', 'TPR.G36584' => 'tpr', 'TPR.G39265' => 'tpr', 'TPR.G39324' => 'tpr', 'TPR.G40862' => 'tpr', 'TPR.G4433' => 'tpr', 'TPR.G4450' => 'tpr', 'TPR.G7380' => 'tpr', 'TPR.G9392' => 'tpr', 'TWI23G0045' => 'twi', 'TWI23G0407' => 'twi', 'TWI39G0322' => 'twi', 'TWI39G1180' => 'twi', 'TWI39G1248' => 'twi', 'unitig_899.g14823' => 'ugi', 'vmacro19106' => 'vma', 'vmacro19107' => 'vma', 'vmacro19108' => 'vma', 'VMungo0251G0218' => 'vmu', 'VMungo0331G0150' => 'vmu', 'VMungo0331G0413' => 'vmu', 'VMungo0331G1170' => 'vmu', 'VMungo0331G1188' => 'vmu', 'VMungo0331G1555' => 'vmu', 'VMungo0331G1815' => 'vmu', 'VMungo0540G1993' => 'vmu', 'VMungo0720G2767' => 'vmu', 'Zm00001eb037110' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D001454', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D001454' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D001454', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '404', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001454' ) ), 'genes' => array( 'A02p41730' => 'bna', 'A06p28470' => 'bna', 'Aa31LG11G1670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2550' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2551' => 'aag', 'Actinidia18287' => 'ach', 'Actinidia25508' => 'ach', 'Ah.02g114520' => 'amhyb', 'AL8G38580' => 'aly', 'arahy.Tifrunner.gnm1.ann1.05PZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0KCS9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0L3IFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22T31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.26VLVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z06T4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JWJ0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5UJZ6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KNN82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VD73D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAI5H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA0H5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G83ENS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKN5US' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IB48BU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDIH96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME8Z3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KK0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAUB69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL6XLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM4CKL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DYAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR5QKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSR2Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1W2M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZV0AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y24I4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YULU3C' => 'arhy', 'AT5G61820' => 'ath', 'ATR0582G142' => 'atr', 'ATR0582G262' => 'atr', 'ATR0582G326' => 'atr', 'ATR0582G349' => 'atr', 'Atru.chr6.1941' => 'acertr', 'AUR62032204' => 'cqu', 'AUR62036973' => 'cqu', 'AUR62043381' => 'cqu', 'BcaB02g09604' => 'bca', 'BcaB07g29819' => 'bca', 'BcaC01g02434' => 'bca', 'BcaC01g02435' => 'bca', 'BcaC01g02436' => 'bca', 'BcaC01g02438' => 'bca', 'BcaC03g18098' => 'bca', 'BolC2t12223H' => 'bol', 'BolC3t18782H' => 'bol', 'BolC3t18788H' => 'bol', 'BolC3t18789H' => 'bol', 'BraA02t09113Z' => 'bra', 'BraA06t25791Z' => 'bra', 'C02p61650' => 'bna', 'C03p65290' => 'bna', 'C03p65330' => 'bna', 'C03p65340' => 'bna', 'CAN.G1089.12' => 'can', 'CAN.G1089.13' => 'can', 'CAN.G313.16' => 'can', 'CAN.G416.58' => 'can', 'CAN.G416.59' => 'can', 'CAN.G416.60' => 'can', 'CAN.G416.61' => 'can', 'CAN.G47.3' => 'can', 'CAN.G758.11' => 'can', 'CANSAT56G0376' => 'cansat', 'CANSAT56G1144' => 'cansat', 'CANSAT56G1598' => 'cansat', 'CARHR275580' => 'chi', 'Carub.0008s2251' => 'cru', 'Carub.0008s2252' => 'cru', 'Ca_03348_v3' => 'car', 'Ca_11099_v3' => 'car', 'Ca_12129_v3' => 'car', 'Ca_18289_v3' => 'car', 'Ca_20127_v3' => 'car', 'Ca_20204_v3' => 'car', 'Ca_23126_v3' => 'car', 'Ca_25256_v3' => 'car', 'Cc04_g05720' => 'ccan', 'Cc04_g05730' => 'ccan', 'Ciclev10031458m.g' => 'ccl', 'Ciclev10031461m.g' => 'ccl', 'CiPaw.01G033000' => 'cil', 'CiPaw.01G033200' => 'cil', 'CiPaw.01G033400' => 'cil', 'CiPaw.01G033600' => 'cil', 'ClCG02G007420' => 'cla', 'ClCG06G014510' => 'cla', 'ClCG06G014570' => 'cla', 'COL.COLO4_37273' => 'col', 'Cpa.g.sc13.188' => 'cpa', 'CsaV3_1G004040' => 'csa', 'CsaV3_1G004050' => 'csa', 'CsaV3_1G004060' => 'csa', 'CsaV3_7G007480' => 'csa', 'CsaV3_7G007490' => 'csa', 'CSS0010069' => 'camsi', 'CSS0013606' => 'camsi', 'DCAR_009629' => 'dca', 'DCAR_009630' => 'dca', 'DCAR_021392' => 'dca', 'DCAR_021557' => 'dca', 'Dinv13705' => 'din', 'Dinv13706' => 'din', 'Dinv23238' => 'din', 'Duzib068G0886' => 'dzi', 'Duzib084G0249' => 'dzi', 'Duzib084G1374' => 'dzi', 'ECA232G2039' => 'eca', 'ECA232G2628' => 'eca', 'ECA232G4705' => 'eca', 'EL10Ac5g11267' => 'bvu', 'Eucgr.K02186' => 'egr', 'FAN04G1932' => 'fan', 'FAN04G2911' => 'fan', 'FAN08G1324' => 'fan', 'FAN13G0164' => 'fan', 'FAN13G0254' => 'fan', 'FAN18G1321' => 'fan', 'FvH4_5g09784' => 'fve', 'FvH4_5g09790' => 'fve', 'Glyma.01G121245' => 'gma', 'Glyma.01G121263' => 'gma', 'Glyma.01G121272' => 'gma', 'Glyma.03G057700' => 'gma', 'Glyma.03G071800' => 'gma', 'Glyma.03G071900' => 'gma', 'Glyma.03G075600' => 'gma', 'Glyma.03G078900' => 'gma', 'Glyma.03G115700' => 'gma', 'Glyma.04G118000' => 'gma', 'Glyma.04G118100' => 'gma', 'Glyma.04G118300' => 'gma', 'Glyma.04G118400' => 'gma', 'Glyma.04G143900' => 'gma', 'Glyma.04G144000' => 'gma', 'Glyma.04G144100' => 'gma', 'Glyma.04G144200' => 'gma', 'Glyma.05G126700' => 'gma', 'Glyma.05G126750' => 'gma', 'Glyma.05G126800' => 'gma', 'Glyma.05G126900' => 'gma', 'Glyma.08G081700' => 'gma', 'Glyma.08G081801' => 'gma', 'Glyma.09G025200' => 'gma', 'Glyma.15G131300' => 'gma', 'Glyma.15G131400' => 'gma', 'Glyma.U008700' => 'gma', 'Gohir.A07G046200' => 'ghi', 'Gohir.A12G194200' => 'ghi', 'Gohir.A12G194300' => 'ghi', 'Gohir.D07G050500' => 'ghi', 'Gohir.D12G196700' => 'ghi', 'Gohir.D12G196800' => 'ghi', 'Gorai.001G053600' => 'gra', 'Gorai.008G211300' => 'gra', 'Gorai.008G211400' => 'gra', 'GSVIVG01008668001' => 'vvi', 'HanXRQChr03g0061641' => 'han', 'HanXRQChr09g0273761' => 'han', 'HanXRQChr09g0273771' => 'han', 'HanXRQChr09g0274011' => 'han', 'HanXRQChr09g0274391' => 'han', 'HanXRQChr09g0274401' => 'han', 'Haze_15134' => 'cav', 'Hma1.2p1_0452F.1_g155860' => 'hma', 'Hma1.2p1_0452F.1_g155870' => 'hma', 'Hma1.2p1_1242F.1_g269910' => 'hma', 'Hma1.2p1_1242F.1_g269920' => 'hma', 'HPP92_000324' => 'vpl', 'HPP92_025301' => 'vpl', 'HPP92_025302' => 'vpl', 'HPP92_025310' => 'vpl', 'Hund10011' => 'sun', 'Hund10022' => 'sun', 'Lalb_Chr07g0188971' => 'lal', 'Lalb_Chr07g0188991' => 'lal', 'Lalb_Chr12g0203891' => 'lal', 'Lalb_Chr12g0203901' => 'lal', 'Lalb_Chr12g0208811' => 'lal', 'Lalb_Chr18g0058041' => 'lal', 'Lalb_Chr19g0126631' => 'lal', 'Lj1g0015663' => 'lja', 'Lj3g0000025' => 'lja', 'Lj3g0007615' => 'lja', 'Lj3g0013305' => 'lja', 'Lj3g0017932' => 'lja', 'Lj3g0018933' => 'lja', 'Lj3g0020835' => 'lja', 'Lj4g0016919' => 'lja', 'Lj4g0019194' => 'lja', 'Lj5A85T114' => 'lonja', 'Lj5g0019809' => 'lja', 'Lj5g0025155' => 'lja', 'Lj6g0019617' => 'lja', 'Lj9A488T62' => 'lonja', 'Lsat_1_v5_gn_4_84201' => 'lsa', 'Lsat_1_v5_gn_4_84241' => 'lsa', 'Lsat_1_v5_gn_4_84261' => 'lsa', 'Manes.06G127700' => 'mes', 'Mapoly0002s0344' => 'mpo', 'Mapoly0002s0345' => 'mpo', 'Mapoly0002s0346' => 'mpo', 'Mapoly0005s0246' => 'mpo', 'Mapoly0066s0047' => 'mpo', 'MBI07_g13948_MAGBIO' => 'mbi', 'MBI07_g13949_MAGBIO' => 'mbi', 'MBI07_g13950_MAGBIO' => 'mbi', 'MBI07_g13951_MAGBIO' => 'mbi', 'MBI07_g13952_MAGBIO' => 'mbi', 'MBI07_g13954_MAGBIO' => 'mbi', 'MD00G1075600' => 'mdo', 'MD00G1075700' => 'mdo', 'MD00G1129500' => 'mdo', 'MD14G1145300' => 'mdo', 'MD14G1145500' => 'mdo', 'MD14G1145600' => 'mdo', 'Medtr0083s0100' => 'mtr', 'Medtr1g035220' => 'mtr', 'Medtr1g052640' => 'mtr', 'Medtr1g062750' => 'mtr', 'Medtr2g030460' => 'mtr', 'Medtr2g030470' => 'mtr', 'Medtr2g030480' => 'mtr', 'Medtr3g035040' => 'mtr', 'Medtr4g094548' => 'mtr', 'Medtr4g094550' => 'mtr', 'Medtr4g094555' => 'mtr', 'Medtr4g094560' => 'mtr', 'Medtr4g094562' => 'mtr', 'Medtr4g094565' => 'mtr', 'Medtr4g094570' => 'mtr', 'Medtr6g048310' => 'mtr', 'Medtr6g048350' => 'mtr', 'Medtr6g089930' => 'mtr', 'Medtr6g090090' => 'mtr', 'Medtr8g039300' => 'mtr', 'MELO3C017327.2' => 'cme', 'MELO3C017328.2' => 'cme', 'MELO3C017329.2' => 'cme', 'MELO3C017331.2' => 'cme', 'MELO3C017332.2' => 'cme', 'MELO3C018553.2' => 'cme', 'Migut.D01172' => 'egut', 'Migut.I00660' => 'egut', 'MSTRG.11203' => 'ama', 'MSTRG.9378' => 'ama', 'Nitab4.5_0001614g0010' => 'nta', 'Nitab4.5_0002540g0040' => 'nta', 'Nitab4.5_0003278g0020' => 'nta', 'Nitab4.5_0007345g0030' => 'nta', 'Nitab4.5_0008229g0010' => 'nta', 'Nitab4.5_0014513g0030' => 'nta', 'Nn1g02121' => 'nnu', 'Oeu046598.1' => 'oeu', 'Oeu051181.1' => 'oeu', 'Os08g0538600' => 'osa', 'Peaxi162Scf00207g00232' => 'pax', 'Peaxi162Scf00628g00076' => 'pax', 'Peaxi162Scf00835g00326' => 'pax', 'PGR102G1961' => 'pgr', 'PGR102G2003' => 'pgr', 'PGSC0003DMG400014468' => 'stu', 'PGSC0003DMG400014470' => 'stu', 'PGSC0003DMG400020037' => 'stu', 'Phvul.002G197800' => 'pvu', 'Phvul.006G127300' => 'pvu', 'Phvul.006G127400' => 'pvu', 'Phvul.009G165400' => 'pvu', 'Phvul.010G000800' => 'pvu', 'Phvul.010G017500' => 'pvu', 'Phvul.010G017800' => 'pvu', 'Phvul.010G017900' => 'pvu', 'Phvul.010G018100' => 'pvu', 'Phvul.010G022300' => 'pvu', 'Phvul.010G022500' => 'pvu', 'Phvul.010G035300' => 'pvu', 'Phvul.010G035400' => 'pvu', 'Phvul.010G035700' => 'pvu', 'Phvul.011G142100' => 'pvu', 'Potri.012G110300' => 'ptr', 'Potri.012G110600' => 'ptr', 'Potri.015G108500' => 'ptr', 'Potri.015G108600' => 'ptr', 'Potri.015G108700' => 'ptr', 'Potri.015G108800' => 'ptr', 'Pp3c10_17760' => 'ppa', 'Pp3c19_20840' => 'ppa', 'Pp3c6_7090' => 'ppa', 'Prupe.5G139900' => 'ppe', 'Psat1g166880' => 'psa', 'Psat7g092640' => 'psa', 'PSO170G0793' => 'pso', 'PSO455G0186' => 'pso', 'PSO675G1950' => 'pso', 'PSO732G0166' => 'pso', 'QL10p000231' => 'qlo', 'QL10p000238' => 'qlo', 'QL10p000256' => 'qlo', 'QL10p000264' => 'qlo', 'RcHm_v2.0_Chr1g0356321' => 'rch', 'RcHm_v2.0_Chr1g0356331' => 'rch', 'RcHm_v2.0_Chr4g0410211' => 'rch', 'RcHm_v2.0_Chr7g0188461' => 'rch', 'RcHm_v2.0_Chr7g0188471' => 'rch', 'Rhsim08G0199200' => 'rsi', 'Rhsim08G0199300' => 'rsi', 'Rhsim08G0199400' => 'rsi', 'Sabra12G0080300' => 'sbr', 'Sabra12G0080400' => 'sbr', 'Sabra15G0128700' => 'sbr', 'Sabra15G0128800' => 'sbr', 'Sabra15G0128900' => 'sbr', 'Sabra15G0131000' => 'sbr', 'Sabra15G0131100' => 'sbr', 'SalBow1G3989' => 'sbo', 'SalBow7G2038' => 'sbo', 'Sc20g0007430' => 'sci', 'Sc20g0007450' => 'sci', 'Sed0006436' => 'sed', 'Sed0010042' => 'sed', 'Sed0020427' => 'sed', 'Sed0023120' => 'sed', 'SEGI_10022' => 'sgi', 'SEGI_18198' => 'sgi', 'SEGI_20435' => 'sgi', 'SEGI_21186' => 'sgi', 'SEGI_28934' => 'sgi', 'SEGI_36732' => 'sgi', 'SGA_v2.0_scaffold37G14668' => 'sas', 'SMO230G0101' => 'smo', 'SMO367G0006' => 'smo', 'SMO367G0266' => 'smo', 'SMO367G0341' => 'smo', 'SMO367G0697' => 'smo', 'Solyc06g068730.1' => 'sly', 'Solyc12g042380.2' => 'sly', 'Sopen06g026010' => 'spe', 'Sopen12g021330' => 'spe', 'Sp2g25020' => 'spa', 'TAR371G0624' => 'tar', 'THA.LOC104818287' => 'tha', 'Thecc.03G142200' => 'tca', 'Thhalv10004123m.g' => 'esa', 'Thhalv10004141m.g' => 'esa', 'TPR.G10843' => 'tpr', 'TPR.G11062' => 'tpr', 'TPR.G11371' => 'tpr', 'TPR.G11459' => 'tpr', 'TPR.G19656' => 'tpr', 'TPR.G20481' => 'tpr', 'TPR.G20841' => 'tpr', 'TPR.G22924' => 'tpr', 'TPR.G22925' => 'tpr', 'TPR.G26351' => 'tpr', 'TPR.G26353' => 'tpr', 'TPR.G28448' => 'tpr', 'TPR.G28747' => 'tpr', 'TPR.G29095' => 'tpr', 'TPR.G29101' => 'tpr', 'TPR.G29925' => 'tpr', 'TPR.G30373' => 'tpr', 'TPR.G30382' => 'tpr', 'TPR.G30384' => 'tpr', 'TPR.G30385' => 'tpr', 'TPR.G31363' => 'tpr', 'TPR.G31413' => 'tpr', 'TPR.G35052' => 'tpr', 'TPR.G36540' => 'tpr', 'TPR.G36584' => 'tpr', 'TPR.G39265' => 'tpr', 'TPR.G39324' => 'tpr', 'TPR.G40862' => 'tpr', 'TPR.G4433' => 'tpr', 'TPR.G4450' => 'tpr', 'TPR.G7380' => 'tpr', 'TPR.G9392' => 'tpr', 'TWI23G0045' => 'twi', 'TWI23G0407' => 'twi', 'TWI39G0322' => 'twi', 'TWI39G1180' => 'twi', 'TWI39G1248' => 'twi', 'unitig_899.g14823' => 'ugi', 'vmacro19106' => 'vma', 'vmacro19107' => 'vma', 'vmacro19108' => 'vma', 'VMungo0251G0218' => 'vmu', 'VMungo0331G0150' => 'vmu', 'VMungo0331G0413' => 'vmu', 'VMungo0331G1170' => 'vmu', 'VMungo0331G1188' => 'vmu', 'VMungo0331G1555' => 'vmu', 'VMungo0331G1815' => 'vmu', 'VMungo0540G1993' => 'vmu', 'VMungo0720G2767' => 'vmu', 'Zm00001eb037110' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D001454' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D001454' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D001454' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001454' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D001454', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '404', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p41730' => 'bna', 'A06p28470' => 'bna', 'Aa31LG11G1670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2550' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2551' => 'aag', 'Actinidia18287' => 'ach', 'Actinidia25508' => 'ach', 'Ah.02g114520' => 'amhyb', 'AL8G38580' => 'aly', 'arahy.Tifrunner.gnm1.ann1.05PZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0KCS9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0L3IFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22T31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.26VLVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z06T4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JWJ0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5UJZ6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KNN82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VD73D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAI5H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA0H5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G83ENS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKN5US' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IB48BU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDIH96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME8Z3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KK0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAUB69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL6XLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM4CKL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DYAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR5QKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSR2Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1W2M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZV0AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y24I4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YULU3C' => 'arhy', 'AT5G61820' => 'ath', 'ATR0582G142' => 'atr', 'ATR0582G262' => 'atr', 'ATR0582G326' => 'atr', 'ATR0582G349' => 'atr', 'Atru.chr6.1941' => 'acertr', 'AUR62032204' => 'cqu', 'AUR62036973' => 'cqu', 'AUR62043381' => 'cqu', 'BcaB02g09604' => 'bca', 'BcaB07g29819' => 'bca', 'BcaC01g02434' => 'bca', 'BcaC01g02435' => 'bca', 'BcaC01g02436' => 'bca', 'BcaC01g02438' => 'bca', 'BcaC03g18098' => 'bca', 'BolC2t12223H' => 'bol', 'BolC3t18782H' => 'bol', 'BolC3t18788H' => 'bol', 'BolC3t18789H' => 'bol', 'BraA02t09113Z' => 'bra', 'BraA06t25791Z' => 'bra', 'C02p61650' => 'bna', 'C03p65290' => 'bna', 'C03p65330' => 'bna', 'C03p65340' => 'bna', 'CAN.G1089.12' => 'can', 'CAN.G1089.13' => 'can', 'CAN.G313.16' => 'can', 'CAN.G416.58' => 'can', 'CAN.G416.59' => 'can', 'CAN.G416.60' => 'can', 'CAN.G416.61' => 'can', 'CAN.G47.3' => 'can', 'CAN.G758.11' => 'can', 'CANSAT56G0376' => 'cansat', 'CANSAT56G1144' => 'cansat', 'CANSAT56G1598' => 'cansat', 'CARHR275580' => 'chi', 'Carub.0008s2251' => 'cru', 'Carub.0008s2252' => 'cru', 'Ca_03348_v3' => 'car', 'Ca_11099_v3' => 'car', 'Ca_12129_v3' => 'car', 'Ca_18289_v3' => 'car', 'Ca_20127_v3' => 'car', 'Ca_20204_v3' => 'car', 'Ca_23126_v3' => 'car', 'Ca_25256_v3' => 'car', 'Cc04_g05720' => 'ccan', 'Cc04_g05730' => 'ccan', 'Ciclev10031458m.g' => 'ccl', 'Ciclev10031461m.g' => 'ccl', 'CiPaw.01G033000' => 'cil', 'CiPaw.01G033200' => 'cil', 'CiPaw.01G033400' => 'cil', 'CiPaw.01G033600' => 'cil', 'ClCG02G007420' => 'cla', 'ClCG06G014510' => 'cla', 'ClCG06G014570' => 'cla', 'COL.COLO4_37273' => 'col', 'Cpa.g.sc13.188' => 'cpa', 'CsaV3_1G004040' => 'csa', 'CsaV3_1G004050' => 'csa', 'CsaV3_1G004060' => 'csa', 'CsaV3_7G007480' => 'csa', 'CsaV3_7G007490' => 'csa', 'CSS0010069' => 'camsi', 'CSS0013606' => 'camsi', 'DCAR_009629' => 'dca', 'DCAR_009630' => 'dca', 'DCAR_021392' => 'dca', 'DCAR_021557' => 'dca', 'Dinv13705' => 'din', 'Dinv13706' => 'din', 'Dinv23238' => 'din', 'Duzib068G0886' => 'dzi', 'Duzib084G0249' => 'dzi', 'Duzib084G1374' => 'dzi', 'ECA232G2039' => 'eca', 'ECA232G2628' => 'eca', 'ECA232G4705' => 'eca', 'EL10Ac5g11267' => 'bvu', 'Eucgr.K02186' => 'egr', 'FAN04G1932' => 'fan', 'FAN04G2911' => 'fan', 'FAN08G1324' => 'fan', 'FAN13G0164' => 'fan', 'FAN13G0254' => 'fan', 'FAN18G1321' => 'fan', 'FvH4_5g09784' => 'fve', 'FvH4_5g09790' => 'fve', 'Glyma.01G121245' => 'gma', 'Glyma.01G121263' => 'gma', 'Glyma.01G121272' => 'gma', 'Glyma.03G057700' => 'gma', 'Glyma.03G071800' => 'gma', 'Glyma.03G071900' => 'gma', 'Glyma.03G075600' => 'gma', 'Glyma.03G078900' => 'gma', 'Glyma.03G115700' => 'gma', 'Glyma.04G118000' => 'gma', 'Glyma.04G118100' => 'gma', 'Glyma.04G118300' => 'gma', 'Glyma.04G118400' => 'gma', 'Glyma.04G143900' => 'gma', 'Glyma.04G144000' => 'gma', 'Glyma.04G144100' => 'gma', 'Glyma.04G144200' => 'gma', 'Glyma.05G126700' => 'gma', 'Glyma.05G126750' => 'gma', 'Glyma.05G126800' => 'gma', 'Glyma.05G126900' => 'gma', 'Glyma.08G081700' => 'gma', 'Glyma.08G081801' => 'gma', 'Glyma.09G025200' => 'gma', 'Glyma.15G131300' => 'gma', 'Glyma.15G131400' => 'gma', 'Glyma.U008700' => 'gma', 'Gohir.A07G046200' => 'ghi', 'Gohir.A12G194200' => 'ghi', 'Gohir.A12G194300' => 'ghi', 'Gohir.D07G050500' => 'ghi', 'Gohir.D12G196700' => 'ghi', 'Gohir.D12G196800' => 'ghi', 'Gorai.001G053600' => 'gra', 'Gorai.008G211300' => 'gra', 'Gorai.008G211400' => 'gra', 'GSVIVG01008668001' => 'vvi', 'HanXRQChr03g0061641' => 'han', 'HanXRQChr09g0273761' => 'han', 'HanXRQChr09g0273771' => 'han', 'HanXRQChr09g0274011' => 'han', 'HanXRQChr09g0274391' => 'han', 'HanXRQChr09g0274401' => 'han', 'Haze_15134' => 'cav', 'Hma1.2p1_0452F.1_g155860' => 'hma', 'Hma1.2p1_0452F.1_g155870' => 'hma', 'Hma1.2p1_1242F.1_g269910' => 'hma', 'Hma1.2p1_1242F.1_g269920' => 'hma', 'HPP92_000324' => 'vpl', 'HPP92_025301' => 'vpl', 'HPP92_025302' => 'vpl', 'HPP92_025310' => 'vpl', 'Hund10011' => 'sun', 'Hund10022' => 'sun', 'Lalb_Chr07g0188971' => 'lal', 'Lalb_Chr07g0188991' => 'lal', 'Lalb_Chr12g0203891' => 'lal', 'Lalb_Chr12g0203901' => 'lal', 'Lalb_Chr12g0208811' => 'lal', 'Lalb_Chr18g0058041' => 'lal', 'Lalb_Chr19g0126631' => 'lal', 'Lj1g0015663' => 'lja', 'Lj3g0000025' => 'lja', 'Lj3g0007615' => 'lja', 'Lj3g0013305' => 'lja', 'Lj3g0017932' => 'lja', 'Lj3g0018933' => 'lja', 'Lj3g0020835' => 'lja', 'Lj4g0016919' => 'lja', 'Lj4g0019194' => 'lja', 'Lj5A85T114' => 'lonja', 'Lj5g0019809' => 'lja', 'Lj5g0025155' => 'lja', 'Lj6g0019617' => 'lja', 'Lj9A488T62' => 'lonja', 'Lsat_1_v5_gn_4_84201' => 'lsa', 'Lsat_1_v5_gn_4_84241' => 'lsa', 'Lsat_1_v5_gn_4_84261' => 'lsa', 'Manes.06G127700' => 'mes', 'Mapoly0002s0344' => 'mpo', 'Mapoly0002s0345' => 'mpo', 'Mapoly0002s0346' => 'mpo', 'Mapoly0005s0246' => 'mpo', 'Mapoly0066s0047' => 'mpo', 'MBI07_g13948_MAGBIO' => 'mbi', 'MBI07_g13949_MAGBIO' => 'mbi', 'MBI07_g13950_MAGBIO' => 'mbi', 'MBI07_g13951_MAGBIO' => 'mbi', 'MBI07_g13952_MAGBIO' => 'mbi', 'MBI07_g13954_MAGBIO' => 'mbi', 'MD00G1075600' => 'mdo', 'MD00G1075700' => 'mdo', 'MD00G1129500' => 'mdo', 'MD14G1145300' => 'mdo', 'MD14G1145500' => 'mdo', 'MD14G1145600' => 'mdo', 'Medtr0083s0100' => 'mtr', 'Medtr1g035220' => 'mtr', 'Medtr1g052640' => 'mtr', 'Medtr1g062750' => 'mtr', 'Medtr2g030460' => 'mtr', 'Medtr2g030470' => 'mtr', 'Medtr2g030480' => 'mtr', 'Medtr3g035040' => 'mtr', 'Medtr4g094548' => 'mtr', 'Medtr4g094550' => 'mtr', 'Medtr4g094555' => 'mtr', 'Medtr4g094560' => 'mtr', 'Medtr4g094562' => 'mtr', 'Medtr4g094565' => 'mtr', 'Medtr4g094570' => 'mtr', 'Medtr6g048310' => 'mtr', 'Medtr6g048350' => 'mtr', 'Medtr6g089930' => 'mtr', 'Medtr6g090090' => 'mtr', 'Medtr8g039300' => 'mtr', 'MELO3C017327.2' => 'cme', 'MELO3C017328.2' => 'cme', 'MELO3C017329.2' => 'cme', 'MELO3C017331.2' => 'cme', 'MELO3C017332.2' => 'cme', 'MELO3C018553.2' => 'cme', 'Migut.D01172' => 'egut', 'Migut.I00660' => 'egut', 'MSTRG.11203' => 'ama', 'MSTRG.9378' => 'ama', 'Nitab4.5_0001614g0010' => 'nta', 'Nitab4.5_0002540g0040' => 'nta', 'Nitab4.5_0003278g0020' => 'nta', 'Nitab4.5_0007345g0030' => 'nta', 'Nitab4.5_0008229g0010' => 'nta', 'Nitab4.5_0014513g0030' => 'nta', 'Nn1g02121' => 'nnu', 'Oeu046598.1' => 'oeu', 'Oeu051181.1' => 'oeu', 'Os08g0538600' => 'osa', 'Peaxi162Scf00207g00232' => 'pax', 'Peaxi162Scf00628g00076' => 'pax', 'Peaxi162Scf00835g00326' => 'pax', 'PGR102G1961' => 'pgr', 'PGR102G2003' => 'pgr', 'PGSC0003DMG400014468' => 'stu', 'PGSC0003DMG400014470' => 'stu', 'PGSC0003DMG400020037' => 'stu', 'Phvul.002G197800' => 'pvu', 'Phvul.006G127300' => 'pvu', 'Phvul.006G127400' => 'pvu', 'Phvul.009G165400' => 'pvu', 'Phvul.010G000800' => 'pvu', 'Phvul.010G017500' => 'pvu', 'Phvul.010G017800' => 'pvu', 'Phvul.010G017900' => 'pvu', 'Phvul.010G018100' => 'pvu', 'Phvul.010G022300' => 'pvu', 'Phvul.010G022500' => 'pvu', 'Phvul.010G035300' => 'pvu', 'Phvul.010G035400' => 'pvu', 'Phvul.010G035700' => 'pvu', 'Phvul.011G142100' => 'pvu', 'Potri.012G110300' => 'ptr', 'Potri.012G110600' => 'ptr', 'Potri.015G108500' => 'ptr', 'Potri.015G108600' => 'ptr', 'Potri.015G108700' => 'ptr', 'Potri.015G108800' => 'ptr', 'Pp3c10_17760' => 'ppa', 'Pp3c19_20840' => 'ppa', 'Pp3c6_7090' => 'ppa', 'Prupe.5G139900' => 'ppe', 'Psat1g166880' => 'psa', 'Psat7g092640' => 'psa', 'PSO170G0793' => 'pso', 'PSO455G0186' => 'pso', 'PSO675G1950' => 'pso', 'PSO732G0166' => 'pso', 'QL10p000231' => 'qlo', 'QL10p000238' => 'qlo', 'QL10p000256' => 'qlo', 'QL10p000264' => 'qlo', 'RcHm_v2.0_Chr1g0356321' => 'rch', 'RcHm_v2.0_Chr1g0356331' => 'rch', 'RcHm_v2.0_Chr4g0410211' => 'rch', 'RcHm_v2.0_Chr7g0188461' => 'rch', 'RcHm_v2.0_Chr7g0188471' => 'rch', 'Rhsim08G0199200' => 'rsi', 'Rhsim08G0199300' => 'rsi', 'Rhsim08G0199400' => 'rsi', 'Sabra12G0080300' => 'sbr', 'Sabra12G0080400' => 'sbr', 'Sabra15G0128700' => 'sbr', 'Sabra15G0128800' => 'sbr', 'Sabra15G0128900' => 'sbr', 'Sabra15G0131000' => 'sbr', 'Sabra15G0131100' => 'sbr', 'SalBow1G3989' => 'sbo', 'SalBow7G2038' => 'sbo', 'Sc20g0007430' => 'sci', 'Sc20g0007450' => 'sci', 'Sed0006436' => 'sed', 'Sed0010042' => 'sed', 'Sed0020427' => 'sed', 'Sed0023120' => 'sed', 'SEGI_10022' => 'sgi', 'SEGI_18198' => 'sgi', 'SEGI_20435' => 'sgi', 'SEGI_21186' => 'sgi', 'SEGI_28934' => 'sgi', 'SEGI_36732' => 'sgi', 'SGA_v2.0_scaffold37G14668' => 'sas', 'SMO230G0101' => 'smo', 'SMO367G0006' => 'smo', 'SMO367G0266' => 'smo', 'SMO367G0341' => 'smo', 'SMO367G0697' => 'smo', 'Solyc06g068730.1' => 'sly', 'Solyc12g042380.2' => 'sly', 'Sopen06g026010' => 'spe', 'Sopen12g021330' => 'spe', 'Sp2g25020' => 'spa', 'TAR371G0624' => 'tar', 'THA.LOC104818287' => 'tha', 'Thecc.03G142200' => 'tca', 'Thhalv10004123m.g' => 'esa', 'Thhalv10004141m.g' => 'esa', 'TPR.G10843' => 'tpr', 'TPR.G11062' => 'tpr', 'TPR.G11371' => 'tpr', 'TPR.G11459' => 'tpr', 'TPR.G19656' => 'tpr', 'TPR.G20481' => 'tpr', 'TPR.G20841' => 'tpr', 'TPR.G22924' => 'tpr', 'TPR.G22925' => 'tpr', 'TPR.G26351' => 'tpr', 'TPR.G26353' => 'tpr', 'TPR.G28448' => 'tpr', 'TPR.G28747' => 'tpr', 'TPR.G29095' => 'tpr', 'TPR.G29101' => 'tpr', 'TPR.G29925' => 'tpr', 'TPR.G30373' => 'tpr', 'TPR.G30382' => 'tpr', 'TPR.G30384' => 'tpr', 'TPR.G30385' => 'tpr', 'TPR.G31363' => 'tpr', 'TPR.G31413' => 'tpr', 'TPR.G35052' => 'tpr', 'TPR.G36540' => 'tpr', 'TPR.G36584' => 'tpr', 'TPR.G39265' => 'tpr', 'TPR.G39324' => 'tpr', 'TPR.G40862' => 'tpr', 'TPR.G4433' => 'tpr', 'TPR.G4450' => 'tpr', 'TPR.G7380' => 'tpr', 'TPR.G9392' => 'tpr', 'TWI23G0045' => 'twi', 'TWI23G0407' => 'twi', 'TWI39G0322' => 'twi', 'TWI39G1180' => 'twi', 'TWI39G1248' => 'twi', 'unitig_899.g14823' => 'ugi', 'vmacro19106' => 'vma', 'vmacro19107' => 'vma', 'vmacro19108' => 'vma', 'VMungo0251G0218' => 'vmu', 'VMungo0331G0150' => 'vmu', 'VMungo0331G0413' => 'vmu', 'VMungo0331G1170' => 'vmu', 'VMungo0331G1188' => 'vmu', 'VMungo0331G1555' => 'vmu', 'VMungo0331G1815' => 'vmu', 'VMungo0540G1993' => 'vmu', 'VMungo0720G2767' => 'vmu', 'Zm00001eb037110' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D001454', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D001454' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D001454', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '404', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001454' ) ), 'genes' => array( 'A02p41730' => 'bna', 'A06p28470' => 'bna', 'Aa31LG11G1670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2550' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2551' => 'aag', 'Actinidia18287' => 'ach', 'Actinidia25508' => 'ach', 'Ah.02g114520' => 'amhyb', 'AL8G38580' => 'aly', 'arahy.Tifrunner.gnm1.ann1.05PZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0KCS9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0L3IFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22T31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.26VLVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z06T4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JWJ0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5UJZ6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KNN82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VD73D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAI5H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA0H5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G83ENS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKN5US' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IB48BU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDIH96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME8Z3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KK0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAUB69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL6XLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM4CKL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DYAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR5QKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSR2Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1W2M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZV0AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y24I4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YULU3C' => 'arhy', 'AT5G61820' => 'ath', 'ATR0582G142' => 'atr', 'ATR0582G262' => 'atr', 'ATR0582G326' => 'atr', 'ATR0582G349' => 'atr', 'Atru.chr6.1941' => 'acertr', 'AUR62032204' => 'cqu', 'AUR62036973' => 'cqu', 'AUR62043381' => 'cqu', 'BcaB02g09604' => 'bca', 'BcaB07g29819' => 'bca', 'BcaC01g02434' => 'bca', 'BcaC01g02435' => 'bca', 'BcaC01g02436' => 'bca', 'BcaC01g02438' => 'bca', 'BcaC03g18098' => 'bca', 'BolC2t12223H' => 'bol', 'BolC3t18782H' => 'bol', 'BolC3t18788H' => 'bol', 'BolC3t18789H' => 'bol', 'BraA02t09113Z' => 'bra', 'BraA06t25791Z' => 'bra', 'C02p61650' => 'bna', 'C03p65290' => 'bna', 'C03p65330' => 'bna', 'C03p65340' => 'bna', 'CAN.G1089.12' => 'can', 'CAN.G1089.13' => 'can', 'CAN.G313.16' => 'can', 'CAN.G416.58' => 'can', 'CAN.G416.59' => 'can', 'CAN.G416.60' => 'can', 'CAN.G416.61' => 'can', 'CAN.G47.3' => 'can', 'CAN.G758.11' => 'can', 'CANSAT56G0376' => 'cansat', 'CANSAT56G1144' => 'cansat', 'CANSAT56G1598' => 'cansat', 'CARHR275580' => 'chi', 'Carub.0008s2251' => 'cru', 'Carub.0008s2252' => 'cru', 'Ca_03348_v3' => 'car', 'Ca_11099_v3' => 'car', 'Ca_12129_v3' => 'car', 'Ca_18289_v3' => 'car', 'Ca_20127_v3' => 'car', 'Ca_20204_v3' => 'car', 'Ca_23126_v3' => 'car', 'Ca_25256_v3' => 'car', 'Cc04_g05720' => 'ccan', 'Cc04_g05730' => 'ccan', 'Ciclev10031458m.g' => 'ccl', 'Ciclev10031461m.g' => 'ccl', 'CiPaw.01G033000' => 'cil', 'CiPaw.01G033200' => 'cil', 'CiPaw.01G033400' => 'cil', 'CiPaw.01G033600' => 'cil', 'ClCG02G007420' => 'cla', 'ClCG06G014510' => 'cla', 'ClCG06G014570' => 'cla', 'COL.COLO4_37273' => 'col', 'Cpa.g.sc13.188' => 'cpa', 'CsaV3_1G004040' => 'csa', 'CsaV3_1G004050' => 'csa', 'CsaV3_1G004060' => 'csa', 'CsaV3_7G007480' => 'csa', 'CsaV3_7G007490' => 'csa', 'CSS0010069' => 'camsi', 'CSS0013606' => 'camsi', 'DCAR_009629' => 'dca', 'DCAR_009630' => 'dca', 'DCAR_021392' => 'dca', 'DCAR_021557' => 'dca', 'Dinv13705' => 'din', 'Dinv13706' => 'din', 'Dinv23238' => 'din', 'Duzib068G0886' => 'dzi', 'Duzib084G0249' => 'dzi', 'Duzib084G1374' => 'dzi', 'ECA232G2039' => 'eca', 'ECA232G2628' => 'eca', 'ECA232G4705' => 'eca', 'EL10Ac5g11267' => 'bvu', 'Eucgr.K02186' => 'egr', 'FAN04G1932' => 'fan', 'FAN04G2911' => 'fan', 'FAN08G1324' => 'fan', 'FAN13G0164' => 'fan', 'FAN13G0254' => 'fan', 'FAN18G1321' => 'fan', 'FvH4_5g09784' => 'fve', 'FvH4_5g09790' => 'fve', 'Glyma.01G121245' => 'gma', 'Glyma.01G121263' => 'gma', 'Glyma.01G121272' => 'gma', 'Glyma.03G057700' => 'gma', 'Glyma.03G071800' => 'gma', 'Glyma.03G071900' => 'gma', 'Glyma.03G075600' => 'gma', 'Glyma.03G078900' => 'gma', 'Glyma.03G115700' => 'gma', 'Glyma.04G118000' => 'gma', 'Glyma.04G118100' => 'gma', 'Glyma.04G118300' => 'gma', 'Glyma.04G118400' => 'gma', 'Glyma.04G143900' => 'gma', 'Glyma.04G144000' => 'gma', 'Glyma.04G144100' => 'gma', 'Glyma.04G144200' => 'gma', 'Glyma.05G126700' => 'gma', 'Glyma.05G126750' => 'gma', 'Glyma.05G126800' => 'gma', 'Glyma.05G126900' => 'gma', 'Glyma.08G081700' => 'gma', 'Glyma.08G081801' => 'gma', 'Glyma.09G025200' => 'gma', 'Glyma.15G131300' => 'gma', 'Glyma.15G131400' => 'gma', 'Glyma.U008700' => 'gma', 'Gohir.A07G046200' => 'ghi', 'Gohir.A12G194200' => 'ghi', 'Gohir.A12G194300' => 'ghi', 'Gohir.D07G050500' => 'ghi', 'Gohir.D12G196700' => 'ghi', 'Gohir.D12G196800' => 'ghi', 'Gorai.001G053600' => 'gra', 'Gorai.008G211300' => 'gra', 'Gorai.008G211400' => 'gra', 'GSVIVG01008668001' => 'vvi', 'HanXRQChr03g0061641' => 'han', 'HanXRQChr09g0273761' => 'han', 'HanXRQChr09g0273771' => 'han', 'HanXRQChr09g0274011' => 'han', 'HanXRQChr09g0274391' => 'han', 'HanXRQChr09g0274401' => 'han', 'Haze_15134' => 'cav', 'Hma1.2p1_0452F.1_g155860' => 'hma', 'Hma1.2p1_0452F.1_g155870' => 'hma', 'Hma1.2p1_1242F.1_g269910' => 'hma', 'Hma1.2p1_1242F.1_g269920' => 'hma', 'HPP92_000324' => 'vpl', 'HPP92_025301' => 'vpl', 'HPP92_025302' => 'vpl', 'HPP92_025310' => 'vpl', 'Hund10011' => 'sun', 'Hund10022' => 'sun', 'Lalb_Chr07g0188971' => 'lal', 'Lalb_Chr07g0188991' => 'lal', 'Lalb_Chr12g0203891' => 'lal', 'Lalb_Chr12g0203901' => 'lal', 'Lalb_Chr12g0208811' => 'lal', 'Lalb_Chr18g0058041' => 'lal', 'Lalb_Chr19g0126631' => 'lal', 'Lj1g0015663' => 'lja', 'Lj3g0000025' => 'lja', 'Lj3g0007615' => 'lja', 'Lj3g0013305' => 'lja', 'Lj3g0017932' => 'lja', 'Lj3g0018933' => 'lja', 'Lj3g0020835' => 'lja', 'Lj4g0016919' => 'lja', 'Lj4g0019194' => 'lja', 'Lj5A85T114' => 'lonja', 'Lj5g0019809' => 'lja', 'Lj5g0025155' => 'lja', 'Lj6g0019617' => 'lja', 'Lj9A488T62' => 'lonja', 'Lsat_1_v5_gn_4_84201' => 'lsa', 'Lsat_1_v5_gn_4_84241' => 'lsa', 'Lsat_1_v5_gn_4_84261' => 'lsa', 'Manes.06G127700' => 'mes', 'Mapoly0002s0344' => 'mpo', 'Mapoly0002s0345' => 'mpo', 'Mapoly0002s0346' => 'mpo', 'Mapoly0005s0246' => 'mpo', 'Mapoly0066s0047' => 'mpo', 'MBI07_g13948_MAGBIO' => 'mbi', 'MBI07_g13949_MAGBIO' => 'mbi', 'MBI07_g13950_MAGBIO' => 'mbi', 'MBI07_g13951_MAGBIO' => 'mbi', 'MBI07_g13952_MAGBIO' => 'mbi', 'MBI07_g13954_MAGBIO' => 'mbi', 'MD00G1075600' => 'mdo', 'MD00G1075700' => 'mdo', 'MD00G1129500' => 'mdo', 'MD14G1145300' => 'mdo', 'MD14G1145500' => 'mdo', 'MD14G1145600' => 'mdo', 'Medtr0083s0100' => 'mtr', 'Medtr1g035220' => 'mtr', 'Medtr1g052640' => 'mtr', 'Medtr1g062750' => 'mtr', 'Medtr2g030460' => 'mtr', 'Medtr2g030470' => 'mtr', 'Medtr2g030480' => 'mtr', 'Medtr3g035040' => 'mtr', 'Medtr4g094548' => 'mtr', 'Medtr4g094550' => 'mtr', 'Medtr4g094555' => 'mtr', 'Medtr4g094560' => 'mtr', 'Medtr4g094562' => 'mtr', 'Medtr4g094565' => 'mtr', 'Medtr4g094570' => 'mtr', 'Medtr6g048310' => 'mtr', 'Medtr6g048350' => 'mtr', 'Medtr6g089930' => 'mtr', 'Medtr6g090090' => 'mtr', 'Medtr8g039300' => 'mtr', 'MELO3C017327.2' => 'cme', 'MELO3C017328.2' => 'cme', 'MELO3C017329.2' => 'cme', 'MELO3C017331.2' => 'cme', 'MELO3C017332.2' => 'cme', 'MELO3C018553.2' => 'cme', 'Migut.D01172' => 'egut', 'Migut.I00660' => 'egut', 'MSTRG.11203' => 'ama', 'MSTRG.9378' => 'ama', 'Nitab4.5_0001614g0010' => 'nta', 'Nitab4.5_0002540g0040' => 'nta', 'Nitab4.5_0003278g0020' => 'nta', 'Nitab4.5_0007345g0030' => 'nta', 'Nitab4.5_0008229g0010' => 'nta', 'Nitab4.5_0014513g0030' => 'nta', 'Nn1g02121' => 'nnu', 'Oeu046598.1' => 'oeu', 'Oeu051181.1' => 'oeu', 'Os08g0538600' => 'osa', 'Peaxi162Scf00207g00232' => 'pax', 'Peaxi162Scf00628g00076' => 'pax', 'Peaxi162Scf00835g00326' => 'pax', 'PGR102G1961' => 'pgr', 'PGR102G2003' => 'pgr', 'PGSC0003DMG400014468' => 'stu', 'PGSC0003DMG400014470' => 'stu', 'PGSC0003DMG400020037' => 'stu', 'Phvul.002G197800' => 'pvu', 'Phvul.006G127300' => 'pvu', 'Phvul.006G127400' => 'pvu', 'Phvul.009G165400' => 'pvu', 'Phvul.010G000800' => 'pvu', 'Phvul.010G017500' => 'pvu', 'Phvul.010G017800' => 'pvu', 'Phvul.010G017900' => 'pvu', 'Phvul.010G018100' => 'pvu', 'Phvul.010G022300' => 'pvu', 'Phvul.010G022500' => 'pvu', 'Phvul.010G035300' => 'pvu', 'Phvul.010G035400' => 'pvu', 'Phvul.010G035700' => 'pvu', 'Phvul.011G142100' => 'pvu', 'Potri.012G110300' => 'ptr', 'Potri.012G110600' => 'ptr', 'Potri.015G108500' => 'ptr', 'Potri.015G108600' => 'ptr', 'Potri.015G108700' => 'ptr', 'Potri.015G108800' => 'ptr', 'Pp3c10_17760' => 'ppa', 'Pp3c19_20840' => 'ppa', 'Pp3c6_7090' => 'ppa', 'Prupe.5G139900' => 'ppe', 'Psat1g166880' => 'psa', 'Psat7g092640' => 'psa', 'PSO170G0793' => 'pso', 'PSO455G0186' => 'pso', 'PSO675G1950' => 'pso', 'PSO732G0166' => 'pso', 'QL10p000231' => 'qlo', 'QL10p000238' => 'qlo', 'QL10p000256' => 'qlo', 'QL10p000264' => 'qlo', 'RcHm_v2.0_Chr1g0356321' => 'rch', 'RcHm_v2.0_Chr1g0356331' => 'rch', 'RcHm_v2.0_Chr4g0410211' => 'rch', 'RcHm_v2.0_Chr7g0188461' => 'rch', 'RcHm_v2.0_Chr7g0188471' => 'rch', 'Rhsim08G0199200' => 'rsi', 'Rhsim08G0199300' => 'rsi', 'Rhsim08G0199400' => 'rsi', 'Sabra12G0080300' => 'sbr', 'Sabra12G0080400' => 'sbr', 'Sabra15G0128700' => 'sbr', 'Sabra15G0128800' => 'sbr', 'Sabra15G0128900' => 'sbr', 'Sabra15G0131000' => 'sbr', 'Sabra15G0131100' => 'sbr', 'SalBow1G3989' => 'sbo', 'SalBow7G2038' => 'sbo', 'Sc20g0007430' => 'sci', 'Sc20g0007450' => 'sci', 'Sed0006436' => 'sed', 'Sed0010042' => 'sed', 'Sed0020427' => 'sed', 'Sed0023120' => 'sed', 'SEGI_10022' => 'sgi', 'SEGI_18198' => 'sgi', 'SEGI_20435' => 'sgi', 'SEGI_21186' => 'sgi', 'SEGI_28934' => 'sgi', 'SEGI_36732' => 'sgi', 'SGA_v2.0_scaffold37G14668' => 'sas', 'SMO230G0101' => 'smo', 'SMO367G0006' => 'smo', 'SMO367G0266' => 'smo', 'SMO367G0341' => 'smo', 'SMO367G0697' => 'smo', 'Solyc06g068730.1' => 'sly', 'Solyc12g042380.2' => 'sly', 'Sopen06g026010' => 'spe', 'Sopen12g021330' => 'spe', 'Sp2g25020' => 'spa', 'TAR371G0624' => 'tar', 'THA.LOC104818287' => 'tha', 'Thecc.03G142200' => 'tca', 'Thhalv10004123m.g' => 'esa', 'Thhalv10004141m.g' => 'esa', 'TPR.G10843' => 'tpr', 'TPR.G11062' => 'tpr', 'TPR.G11371' => 'tpr', 'TPR.G11459' => 'tpr', 'TPR.G19656' => 'tpr', 'TPR.G20481' => 'tpr', 'TPR.G20841' => 'tpr', 'TPR.G22924' => 'tpr', 'TPR.G22925' => 'tpr', 'TPR.G26351' => 'tpr', 'TPR.G26353' => 'tpr', 'TPR.G28448' => 'tpr', 'TPR.G28747' => 'tpr', 'TPR.G29095' => 'tpr', 'TPR.G29101' => 'tpr', 'TPR.G29925' => 'tpr', 'TPR.G30373' => 'tpr', 'TPR.G30382' => 'tpr', 'TPR.G30384' => 'tpr', 'TPR.G30385' => 'tpr', 'TPR.G31363' => 'tpr', 'TPR.G31413' => 'tpr', 'TPR.G35052' => 'tpr', 'TPR.G36540' => 'tpr', 'TPR.G36584' => 'tpr', 'TPR.G39265' => 'tpr', 'TPR.G39324' => 'tpr', 'TPR.G40862' => 'tpr', 'TPR.G4433' => 'tpr', 'TPR.G4450' => 'tpr', 'TPR.G7380' => 'tpr', 'TPR.G9392' => 'tpr', 'TWI23G0045' => 'twi', 'TWI23G0407' => 'twi', 'TWI39G0322' => 'twi', 'TWI39G1180' => 'twi', 'TWI39G1248' => 'twi', 'unitig_899.g14823' => 'ugi', 'vmacro19106' => 'vma', 'vmacro19107' => 'vma', 'vmacro19108' => 'vma', 'VMungo0251G0218' => 'vmu', 'VMungo0331G0150' => 'vmu', 'VMungo0331G0413' => 'vmu', 'VMungo0331G1170' => 'vmu', 'VMungo0331G1188' => 'vmu', 'VMungo0331G1555' => 'vmu', 'VMungo0331G1815' => 'vmu', 'VMungo0540G1993' => 'vmu', 'VMungo0720G2767' => 'vmu', 'Zm00001eb037110' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D001454' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D001454' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D001454' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001454' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D001454', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '404', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p41730' => 'bna', 'A06p28470' => 'bna', 'Aa31LG11G1670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2550' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2551' => 'aag', 'Actinidia18287' => 'ach', 'Actinidia25508' => 'ach', 'Ah.02g114520' => 'amhyb', 'AL8G38580' => 'aly', 'arahy.Tifrunner.gnm1.ann1.05PZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0KCS9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0L3IFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22T31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.26VLVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z06T4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JWJ0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5UJZ6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KNN82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VD73D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAI5H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA0H5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G83ENS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKN5US' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IB48BU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDIH96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME8Z3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KK0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAUB69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL6XLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM4CKL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DYAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR5QKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSR2Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1W2M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZV0AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y24I4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YULU3C' => 'arhy', 'AT5G61820' => 'ath', 'ATR0582G142' => 'atr', 'ATR0582G262' => 'atr', 'ATR0582G326' => 'atr', 'ATR0582G349' => 'atr', 'Atru.chr6.1941' => 'acertr', 'AUR62032204' => 'cqu', 'AUR62036973' => 'cqu', 'AUR62043381' => 'cqu', 'BcaB02g09604' => 'bca', 'BcaB07g29819' => 'bca', 'BcaC01g02434' => 'bca', 'BcaC01g02435' => 'bca', 'BcaC01g02436' => 'bca', 'BcaC01g02438' => 'bca', 'BcaC03g18098' => 'bca', 'BolC2t12223H' => 'bol', 'BolC3t18782H' => 'bol', 'BolC3t18788H' => 'bol', 'BolC3t18789H' => 'bol', 'BraA02t09113Z' => 'bra', 'BraA06t25791Z' => 'bra', 'C02p61650' => 'bna', 'C03p65290' => 'bna', 'C03p65330' => 'bna', 'C03p65340' => 'bna', 'CAN.G1089.12' => 'can', 'CAN.G1089.13' => 'can', 'CAN.G313.16' => 'can', 'CAN.G416.58' => 'can', 'CAN.G416.59' => 'can', 'CAN.G416.60' => 'can', 'CAN.G416.61' => 'can', 'CAN.G47.3' => 'can', 'CAN.G758.11' => 'can', 'CANSAT56G0376' => 'cansat', 'CANSAT56G1144' => 'cansat', 'CANSAT56G1598' => 'cansat', 'CARHR275580' => 'chi', 'Carub.0008s2251' => 'cru', 'Carub.0008s2252' => 'cru', 'Ca_03348_v3' => 'car', 'Ca_11099_v3' => 'car', 'Ca_12129_v3' => 'car', 'Ca_18289_v3' => 'car', 'Ca_20127_v3' => 'car', 'Ca_20204_v3' => 'car', 'Ca_23126_v3' => 'car', 'Ca_25256_v3' => 'car', 'Cc04_g05720' => 'ccan', 'Cc04_g05730' => 'ccan', 'Ciclev10031458m.g' => 'ccl', 'Ciclev10031461m.g' => 'ccl', 'CiPaw.01G033000' => 'cil', 'CiPaw.01G033200' => 'cil', 'CiPaw.01G033400' => 'cil', 'CiPaw.01G033600' => 'cil', 'ClCG02G007420' => 'cla', 'ClCG06G014510' => 'cla', 'ClCG06G014570' => 'cla', 'COL.COLO4_37273' => 'col', 'Cpa.g.sc13.188' => 'cpa', 'CsaV3_1G004040' => 'csa', 'CsaV3_1G004050' => 'csa', 'CsaV3_1G004060' => 'csa', 'CsaV3_7G007480' => 'csa', 'CsaV3_7G007490' => 'csa', 'CSS0010069' => 'camsi', 'CSS0013606' => 'camsi', 'DCAR_009629' => 'dca', 'DCAR_009630' => 'dca', 'DCAR_021392' => 'dca', 'DCAR_021557' => 'dca', 'Dinv13705' => 'din', 'Dinv13706' => 'din', 'Dinv23238' => 'din', 'Duzib068G0886' => 'dzi', 'Duzib084G0249' => 'dzi', 'Duzib084G1374' => 'dzi', 'ECA232G2039' => 'eca', 'ECA232G2628' => 'eca', 'ECA232G4705' => 'eca', 'EL10Ac5g11267' => 'bvu', 'Eucgr.K02186' => 'egr', 'FAN04G1932' => 'fan', 'FAN04G2911' => 'fan', 'FAN08G1324' => 'fan', 'FAN13G0164' => 'fan', 'FAN13G0254' => 'fan', 'FAN18G1321' => 'fan', 'FvH4_5g09784' => 'fve', 'FvH4_5g09790' => 'fve', 'Glyma.01G121245' => 'gma', 'Glyma.01G121263' => 'gma', 'Glyma.01G121272' => 'gma', 'Glyma.03G057700' => 'gma', 'Glyma.03G071800' => 'gma', 'Glyma.03G071900' => 'gma', 'Glyma.03G075600' => 'gma', 'Glyma.03G078900' => 'gma', 'Glyma.03G115700' => 'gma', 'Glyma.04G118000' => 'gma', 'Glyma.04G118100' => 'gma', 'Glyma.04G118300' => 'gma', 'Glyma.04G118400' => 'gma', 'Glyma.04G143900' => 'gma', 'Glyma.04G144000' => 'gma', 'Glyma.04G144100' => 'gma', 'Glyma.04G144200' => 'gma', 'Glyma.05G126700' => 'gma', 'Glyma.05G126750' => 'gma', 'Glyma.05G126800' => 'gma', 'Glyma.05G126900' => 'gma', 'Glyma.08G081700' => 'gma', 'Glyma.08G081801' => 'gma', 'Glyma.09G025200' => 'gma', 'Glyma.15G131300' => 'gma', 'Glyma.15G131400' => 'gma', 'Glyma.U008700' => 'gma', 'Gohir.A07G046200' => 'ghi', 'Gohir.A12G194200' => 'ghi', 'Gohir.A12G194300' => 'ghi', 'Gohir.D07G050500' => 'ghi', 'Gohir.D12G196700' => 'ghi', 'Gohir.D12G196800' => 'ghi', 'Gorai.001G053600' => 'gra', 'Gorai.008G211300' => 'gra', 'Gorai.008G211400' => 'gra', 'GSVIVG01008668001' => 'vvi', 'HanXRQChr03g0061641' => 'han', 'HanXRQChr09g0273761' => 'han', 'HanXRQChr09g0273771' => 'han', 'HanXRQChr09g0274011' => 'han', 'HanXRQChr09g0274391' => 'han', 'HanXRQChr09g0274401' => 'han', 'Haze_15134' => 'cav', 'Hma1.2p1_0452F.1_g155860' => 'hma', 'Hma1.2p1_0452F.1_g155870' => 'hma', 'Hma1.2p1_1242F.1_g269910' => 'hma', 'Hma1.2p1_1242F.1_g269920' => 'hma', 'HPP92_000324' => 'vpl', 'HPP92_025301' => 'vpl', 'HPP92_025302' => 'vpl', 'HPP92_025310' => 'vpl', 'Hund10011' => 'sun', 'Hund10022' => 'sun', 'Lalb_Chr07g0188971' => 'lal', 'Lalb_Chr07g0188991' => 'lal', 'Lalb_Chr12g0203891' => 'lal', 'Lalb_Chr12g0203901' => 'lal', 'Lalb_Chr12g0208811' => 'lal', 'Lalb_Chr18g0058041' => 'lal', 'Lalb_Chr19g0126631' => 'lal', 'Lj1g0015663' => 'lja', 'Lj3g0000025' => 'lja', 'Lj3g0007615' => 'lja', 'Lj3g0013305' => 'lja', 'Lj3g0017932' => 'lja', 'Lj3g0018933' => 'lja', 'Lj3g0020835' => 'lja', 'Lj4g0016919' => 'lja', 'Lj4g0019194' => 'lja', 'Lj5A85T114' => 'lonja', 'Lj5g0019809' => 'lja', 'Lj5g0025155' => 'lja', 'Lj6g0019617' => 'lja', 'Lj9A488T62' => 'lonja', 'Lsat_1_v5_gn_4_84201' => 'lsa', 'Lsat_1_v5_gn_4_84241' => 'lsa', 'Lsat_1_v5_gn_4_84261' => 'lsa', 'Manes.06G127700' => 'mes', 'Mapoly0002s0344' => 'mpo', 'Mapoly0002s0345' => 'mpo', 'Mapoly0002s0346' => 'mpo', 'Mapoly0005s0246' => 'mpo', 'Mapoly0066s0047' => 'mpo', 'MBI07_g13948_MAGBIO' => 'mbi', 'MBI07_g13949_MAGBIO' => 'mbi', 'MBI07_g13950_MAGBIO' => 'mbi', 'MBI07_g13951_MAGBIO' => 'mbi', 'MBI07_g13952_MAGBIO' => 'mbi', 'MBI07_g13954_MAGBIO' => 'mbi', 'MD00G1075600' => 'mdo', 'MD00G1075700' => 'mdo', 'MD00G1129500' => 'mdo', 'MD14G1145300' => 'mdo', 'MD14G1145500' => 'mdo', 'MD14G1145600' => 'mdo', 'Medtr0083s0100' => 'mtr', 'Medtr1g035220' => 'mtr', 'Medtr1g052640' => 'mtr', 'Medtr1g062750' => 'mtr', 'Medtr2g030460' => 'mtr', 'Medtr2g030470' => 'mtr', 'Medtr2g030480' => 'mtr', 'Medtr3g035040' => 'mtr', 'Medtr4g094548' => 'mtr', 'Medtr4g094550' => 'mtr', 'Medtr4g094555' => 'mtr', 'Medtr4g094560' => 'mtr', 'Medtr4g094562' => 'mtr', 'Medtr4g094565' => 'mtr', 'Medtr4g094570' => 'mtr', 'Medtr6g048310' => 'mtr', 'Medtr6g048350' => 'mtr', 'Medtr6g089930' => 'mtr', 'Medtr6g090090' => 'mtr', 'Medtr8g039300' => 'mtr', 'MELO3C017327.2' => 'cme', 'MELO3C017328.2' => 'cme', 'MELO3C017329.2' => 'cme', 'MELO3C017331.2' => 'cme', 'MELO3C017332.2' => 'cme', 'MELO3C018553.2' => 'cme', 'Migut.D01172' => 'egut', 'Migut.I00660' => 'egut', 'MSTRG.11203' => 'ama', 'MSTRG.9378' => 'ama', 'Nitab4.5_0001614g0010' => 'nta', 'Nitab4.5_0002540g0040' => 'nta', 'Nitab4.5_0003278g0020' => 'nta', 'Nitab4.5_0007345g0030' => 'nta', 'Nitab4.5_0008229g0010' => 'nta', 'Nitab4.5_0014513g0030' => 'nta', 'Nn1g02121' => 'nnu', 'Oeu046598.1' => 'oeu', 'Oeu051181.1' => 'oeu', 'Os08g0538600' => 'osa', 'Peaxi162Scf00207g00232' => 'pax', 'Peaxi162Scf00628g00076' => 'pax', 'Peaxi162Scf00835g00326' => 'pax', 'PGR102G1961' => 'pgr', 'PGR102G2003' => 'pgr', 'PGSC0003DMG400014468' => 'stu', 'PGSC0003DMG400014470' => 'stu', 'PGSC0003DMG400020037' => 'stu', 'Phvul.002G197800' => 'pvu', 'Phvul.006G127300' => 'pvu', 'Phvul.006G127400' => 'pvu', 'Phvul.009G165400' => 'pvu', 'Phvul.010G000800' => 'pvu', 'Phvul.010G017500' => 'pvu', 'Phvul.010G017800' => 'pvu', 'Phvul.010G017900' => 'pvu', 'Phvul.010G018100' => 'pvu', 'Phvul.010G022300' => 'pvu', 'Phvul.010G022500' => 'pvu', 'Phvul.010G035300' => 'pvu', 'Phvul.010G035400' => 'pvu', 'Phvul.010G035700' => 'pvu', 'Phvul.011G142100' => 'pvu', 'Potri.012G110300' => 'ptr', 'Potri.012G110600' => 'ptr', 'Potri.015G108500' => 'ptr', 'Potri.015G108600' => 'ptr', 'Potri.015G108700' => 'ptr', 'Potri.015G108800' => 'ptr', 'Pp3c10_17760' => 'ppa', 'Pp3c19_20840' => 'ppa', 'Pp3c6_7090' => 'ppa', 'Prupe.5G139900' => 'ppe', 'Psat1g166880' => 'psa', 'Psat7g092640' => 'psa', 'PSO170G0793' => 'pso', 'PSO455G0186' => 'pso', 'PSO675G1950' => 'pso', 'PSO732G0166' => 'pso', 'QL10p000231' => 'qlo', 'QL10p000238' => 'qlo', 'QL10p000256' => 'qlo', 'QL10p000264' => 'qlo', 'RcHm_v2.0_Chr1g0356321' => 'rch', 'RcHm_v2.0_Chr1g0356331' => 'rch', 'RcHm_v2.0_Chr4g0410211' => 'rch', 'RcHm_v2.0_Chr7g0188461' => 'rch', 'RcHm_v2.0_Chr7g0188471' => 'rch', 'Rhsim08G0199200' => 'rsi', 'Rhsim08G0199300' => 'rsi', 'Rhsim08G0199400' => 'rsi', 'Sabra12G0080300' => 'sbr', 'Sabra12G0080400' => 'sbr', 'Sabra15G0128700' => 'sbr', 'Sabra15G0128800' => 'sbr', 'Sabra15G0128900' => 'sbr', 'Sabra15G0131000' => 'sbr', 'Sabra15G0131100' => 'sbr', 'SalBow1G3989' => 'sbo', 'SalBow7G2038' => 'sbo', 'Sc20g0007430' => 'sci', 'Sc20g0007450' => 'sci', 'Sed0006436' => 'sed', 'Sed0010042' => 'sed', 'Sed0020427' => 'sed', 'Sed0023120' => 'sed', 'SEGI_10022' => 'sgi', 'SEGI_18198' => 'sgi', 'SEGI_20435' => 'sgi', 'SEGI_21186' => 'sgi', 'SEGI_28934' => 'sgi', 'SEGI_36732' => 'sgi', 'SGA_v2.0_scaffold37G14668' => 'sas', 'SMO230G0101' => 'smo', 'SMO367G0006' => 'smo', 'SMO367G0266' => 'smo', 'SMO367G0341' => 'smo', 'SMO367G0697' => 'smo', 'Solyc06g068730.1' => 'sly', 'Solyc12g042380.2' => 'sly', 'Sopen06g026010' => 'spe', 'Sopen12g021330' => 'spe', 'Sp2g25020' => 'spa', 'TAR371G0624' => 'tar', 'THA.LOC104818287' => 'tha', 'Thecc.03G142200' => 'tca', 'Thhalv10004123m.g' => 'esa', 'Thhalv10004141m.g' => 'esa', 'TPR.G10843' => 'tpr', 'TPR.G11062' => 'tpr', 'TPR.G11371' => 'tpr', 'TPR.G11459' => 'tpr', 'TPR.G19656' => 'tpr', 'TPR.G20481' => 'tpr', 'TPR.G20841' => 'tpr', 'TPR.G22924' => 'tpr', 'TPR.G22925' => 'tpr', 'TPR.G26351' => 'tpr', 'TPR.G26353' => 'tpr', 'TPR.G28448' => 'tpr', 'TPR.G28747' => 'tpr', 'TPR.G29095' => 'tpr', 'TPR.G29101' => 'tpr', 'TPR.G29925' => 'tpr', 'TPR.G30373' => 'tpr', 'TPR.G30382' => 'tpr', 'TPR.G30384' => 'tpr', 'TPR.G30385' => 'tpr', 'TPR.G31363' => 'tpr', 'TPR.G31413' => 'tpr', 'TPR.G35052' => 'tpr', 'TPR.G36540' => 'tpr', 'TPR.G36584' => 'tpr', 'TPR.G39265' => 'tpr', 'TPR.G39324' => 'tpr', 'TPR.G40862' => 'tpr', 'TPR.G4433' => 'tpr', 'TPR.G4450' => 'tpr', 'TPR.G7380' => 'tpr', 'TPR.G9392' => 'tpr', 'TWI23G0045' => 'twi', 'TWI23G0407' => 'twi', 'TWI39G0322' => 'twi', 'TWI39G1180' => 'twi', 'TWI39G1248' => 'twi', 'unitig_899.g14823' => 'ugi', 'vmacro19106' => 'vma', 'vmacro19107' => 'vma', 'vmacro19108' => 'vma', 'VMungo0251G0218' => 'vmu', 'VMungo0331G0150' => 'vmu', 'VMungo0331G0413' => 'vmu', 'VMungo0331G1170' => 'vmu', 'VMungo0331G1188' => 'vmu', 'VMungo0331G1555' => 'vmu', 'VMungo0331G1815' => 'vmu', 'VMungo0540G1993' => 'vmu', 'VMungo0720G2767' => 'vmu', 'Zm00001eb037110' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D001454', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D001454' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D001454', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '404', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001454' ) ), 'genes' => array( 'A02p41730' => 'bna', 'A06p28470' => 'bna', 'Aa31LG11G1670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2550' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2551' => 'aag', 'Actinidia18287' => 'ach', 'Actinidia25508' => 'ach', 'Ah.02g114520' => 'amhyb', 'AL8G38580' => 'aly', 'arahy.Tifrunner.gnm1.ann1.05PZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0KCS9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0L3IFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22T31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.26VLVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z06T4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JWJ0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5UJZ6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KNN82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VD73D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAI5H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA0H5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G83ENS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKN5US' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IB48BU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDIH96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME8Z3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KK0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAUB69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL6XLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM4CKL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DYAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR5QKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSR2Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1W2M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZV0AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y24I4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YULU3C' => 'arhy', 'AT5G61820' => 'ath', 'ATR0582G142' => 'atr', 'ATR0582G262' => 'atr', 'ATR0582G326' => 'atr', 'ATR0582G349' => 'atr', 'Atru.chr6.1941' => 'acertr', 'AUR62032204' => 'cqu', 'AUR62036973' => 'cqu', 'AUR62043381' => 'cqu', 'BcaB02g09604' => 'bca', 'BcaB07g29819' => 'bca', 'BcaC01g02434' => 'bca', 'BcaC01g02435' => 'bca', 'BcaC01g02436' => 'bca', 'BcaC01g02438' => 'bca', 'BcaC03g18098' => 'bca', 'BolC2t12223H' => 'bol', 'BolC3t18782H' => 'bol', 'BolC3t18788H' => 'bol', 'BolC3t18789H' => 'bol', 'BraA02t09113Z' => 'bra', 'BraA06t25791Z' => 'bra', 'C02p61650' => 'bna', 'C03p65290' => 'bna', 'C03p65330' => 'bna', 'C03p65340' => 'bna', 'CAN.G1089.12' => 'can', 'CAN.G1089.13' => 'can', 'CAN.G313.16' => 'can', 'CAN.G416.58' => 'can', 'CAN.G416.59' => 'can', 'CAN.G416.60' => 'can', 'CAN.G416.61' => 'can', 'CAN.G47.3' => 'can', 'CAN.G758.11' => 'can', 'CANSAT56G0376' => 'cansat', 'CANSAT56G1144' => 'cansat', 'CANSAT56G1598' => 'cansat', 'CARHR275580' => 'chi', 'Carub.0008s2251' => 'cru', 'Carub.0008s2252' => 'cru', 'Ca_03348_v3' => 'car', 'Ca_11099_v3' => 'car', 'Ca_12129_v3' => 'car', 'Ca_18289_v3' => 'car', 'Ca_20127_v3' => 'car', 'Ca_20204_v3' => 'car', 'Ca_23126_v3' => 'car', 'Ca_25256_v3' => 'car', 'Cc04_g05720' => 'ccan', 'Cc04_g05730' => 'ccan', 'Ciclev10031458m.g' => 'ccl', 'Ciclev10031461m.g' => 'ccl', 'CiPaw.01G033000' => 'cil', 'CiPaw.01G033200' => 'cil', 'CiPaw.01G033400' => 'cil', 'CiPaw.01G033600' => 'cil', 'ClCG02G007420' => 'cla', 'ClCG06G014510' => 'cla', 'ClCG06G014570' => 'cla', 'COL.COLO4_37273' => 'col', 'Cpa.g.sc13.188' => 'cpa', 'CsaV3_1G004040' => 'csa', 'CsaV3_1G004050' => 'csa', 'CsaV3_1G004060' => 'csa', 'CsaV3_7G007480' => 'csa', 'CsaV3_7G007490' => 'csa', 'CSS0010069' => 'camsi', 'CSS0013606' => 'camsi', 'DCAR_009629' => 'dca', 'DCAR_009630' => 'dca', 'DCAR_021392' => 'dca', 'DCAR_021557' => 'dca', 'Dinv13705' => 'din', 'Dinv13706' => 'din', 'Dinv23238' => 'din', 'Duzib068G0886' => 'dzi', 'Duzib084G0249' => 'dzi', 'Duzib084G1374' => 'dzi', 'ECA232G2039' => 'eca', 'ECA232G2628' => 'eca', 'ECA232G4705' => 'eca', 'EL10Ac5g11267' => 'bvu', 'Eucgr.K02186' => 'egr', 'FAN04G1932' => 'fan', 'FAN04G2911' => 'fan', 'FAN08G1324' => 'fan', 'FAN13G0164' => 'fan', 'FAN13G0254' => 'fan', 'FAN18G1321' => 'fan', 'FvH4_5g09784' => 'fve', 'FvH4_5g09790' => 'fve', 'Glyma.01G121245' => 'gma', 'Glyma.01G121263' => 'gma', 'Glyma.01G121272' => 'gma', 'Glyma.03G057700' => 'gma', 'Glyma.03G071800' => 'gma', 'Glyma.03G071900' => 'gma', 'Glyma.03G075600' => 'gma', 'Glyma.03G078900' => 'gma', 'Glyma.03G115700' => 'gma', 'Glyma.04G118000' => 'gma', 'Glyma.04G118100' => 'gma', 'Glyma.04G118300' => 'gma', 'Glyma.04G118400' => 'gma', 'Glyma.04G143900' => 'gma', 'Glyma.04G144000' => 'gma', 'Glyma.04G144100' => 'gma', 'Glyma.04G144200' => 'gma', 'Glyma.05G126700' => 'gma', 'Glyma.05G126750' => 'gma', 'Glyma.05G126800' => 'gma', 'Glyma.05G126900' => 'gma', 'Glyma.08G081700' => 'gma', 'Glyma.08G081801' => 'gma', 'Glyma.09G025200' => 'gma', 'Glyma.15G131300' => 'gma', 'Glyma.15G131400' => 'gma', 'Glyma.U008700' => 'gma', 'Gohir.A07G046200' => 'ghi', 'Gohir.A12G194200' => 'ghi', 'Gohir.A12G194300' => 'ghi', 'Gohir.D07G050500' => 'ghi', 'Gohir.D12G196700' => 'ghi', 'Gohir.D12G196800' => 'ghi', 'Gorai.001G053600' => 'gra', 'Gorai.008G211300' => 'gra', 'Gorai.008G211400' => 'gra', 'GSVIVG01008668001' => 'vvi', 'HanXRQChr03g0061641' => 'han', 'HanXRQChr09g0273761' => 'han', 'HanXRQChr09g0273771' => 'han', 'HanXRQChr09g0274011' => 'han', 'HanXRQChr09g0274391' => 'han', 'HanXRQChr09g0274401' => 'han', 'Haze_15134' => 'cav', 'Hma1.2p1_0452F.1_g155860' => 'hma', 'Hma1.2p1_0452F.1_g155870' => 'hma', 'Hma1.2p1_1242F.1_g269910' => 'hma', 'Hma1.2p1_1242F.1_g269920' => 'hma', 'HPP92_000324' => 'vpl', 'HPP92_025301' => 'vpl', 'HPP92_025302' => 'vpl', 'HPP92_025310' => 'vpl', 'Hund10011' => 'sun', 'Hund10022' => 'sun', 'Lalb_Chr07g0188971' => 'lal', 'Lalb_Chr07g0188991' => 'lal', 'Lalb_Chr12g0203891' => 'lal', 'Lalb_Chr12g0203901' => 'lal', 'Lalb_Chr12g0208811' => 'lal', 'Lalb_Chr18g0058041' => 'lal', 'Lalb_Chr19g0126631' => 'lal', 'Lj1g0015663' => 'lja', 'Lj3g0000025' => 'lja', 'Lj3g0007615' => 'lja', 'Lj3g0013305' => 'lja', 'Lj3g0017932' => 'lja', 'Lj3g0018933' => 'lja', 'Lj3g0020835' => 'lja', 'Lj4g0016919' => 'lja', 'Lj4g0019194' => 'lja', 'Lj5A85T114' => 'lonja', 'Lj5g0019809' => 'lja', 'Lj5g0025155' => 'lja', 'Lj6g0019617' => 'lja', 'Lj9A488T62' => 'lonja', 'Lsat_1_v5_gn_4_84201' => 'lsa', 'Lsat_1_v5_gn_4_84241' => 'lsa', 'Lsat_1_v5_gn_4_84261' => 'lsa', 'Manes.06G127700' => 'mes', 'Mapoly0002s0344' => 'mpo', 'Mapoly0002s0345' => 'mpo', 'Mapoly0002s0346' => 'mpo', 'Mapoly0005s0246' => 'mpo', 'Mapoly0066s0047' => 'mpo', 'MBI07_g13948_MAGBIO' => 'mbi', 'MBI07_g13949_MAGBIO' => 'mbi', 'MBI07_g13950_MAGBIO' => 'mbi', 'MBI07_g13951_MAGBIO' => 'mbi', 'MBI07_g13952_MAGBIO' => 'mbi', 'MBI07_g13954_MAGBIO' => 'mbi', 'MD00G1075600' => 'mdo', 'MD00G1075700' => 'mdo', 'MD00G1129500' => 'mdo', 'MD14G1145300' => 'mdo', 'MD14G1145500' => 'mdo', 'MD14G1145600' => 'mdo', 'Medtr0083s0100' => 'mtr', 'Medtr1g035220' => 'mtr', 'Medtr1g052640' => 'mtr', 'Medtr1g062750' => 'mtr', 'Medtr2g030460' => 'mtr', 'Medtr2g030470' => 'mtr', 'Medtr2g030480' => 'mtr', 'Medtr3g035040' => 'mtr', 'Medtr4g094548' => 'mtr', 'Medtr4g094550' => 'mtr', 'Medtr4g094555' => 'mtr', 'Medtr4g094560' => 'mtr', 'Medtr4g094562' => 'mtr', 'Medtr4g094565' => 'mtr', 'Medtr4g094570' => 'mtr', 'Medtr6g048310' => 'mtr', 'Medtr6g048350' => 'mtr', 'Medtr6g089930' => 'mtr', 'Medtr6g090090' => 'mtr', 'Medtr8g039300' => 'mtr', 'MELO3C017327.2' => 'cme', 'MELO3C017328.2' => 'cme', 'MELO3C017329.2' => 'cme', 'MELO3C017331.2' => 'cme', 'MELO3C017332.2' => 'cme', 'MELO3C018553.2' => 'cme', 'Migut.D01172' => 'egut', 'Migut.I00660' => 'egut', 'MSTRG.11203' => 'ama', 'MSTRG.9378' => 'ama', 'Nitab4.5_0001614g0010' => 'nta', 'Nitab4.5_0002540g0040' => 'nta', 'Nitab4.5_0003278g0020' => 'nta', 'Nitab4.5_0007345g0030' => 'nta', 'Nitab4.5_0008229g0010' => 'nta', 'Nitab4.5_0014513g0030' => 'nta', 'Nn1g02121' => 'nnu', 'Oeu046598.1' => 'oeu', 'Oeu051181.1' => 'oeu', 'Os08g0538600' => 'osa', 'Peaxi162Scf00207g00232' => 'pax', 'Peaxi162Scf00628g00076' => 'pax', 'Peaxi162Scf00835g00326' => 'pax', 'PGR102G1961' => 'pgr', 'PGR102G2003' => 'pgr', 'PGSC0003DMG400014468' => 'stu', 'PGSC0003DMG400014470' => 'stu', 'PGSC0003DMG400020037' => 'stu', 'Phvul.002G197800' => 'pvu', 'Phvul.006G127300' => 'pvu', 'Phvul.006G127400' => 'pvu', 'Phvul.009G165400' => 'pvu', 'Phvul.010G000800' => 'pvu', 'Phvul.010G017500' => 'pvu', 'Phvul.010G017800' => 'pvu', 'Phvul.010G017900' => 'pvu', 'Phvul.010G018100' => 'pvu', 'Phvul.010G022300' => 'pvu', 'Phvul.010G022500' => 'pvu', 'Phvul.010G035300' => 'pvu', 'Phvul.010G035400' => 'pvu', 'Phvul.010G035700' => 'pvu', 'Phvul.011G142100' => 'pvu', 'Potri.012G110300' => 'ptr', 'Potri.012G110600' => 'ptr', 'Potri.015G108500' => 'ptr', 'Potri.015G108600' => 'ptr', 'Potri.015G108700' => 'ptr', 'Potri.015G108800' => 'ptr', 'Pp3c10_17760' => 'ppa', 'Pp3c19_20840' => 'ppa', 'Pp3c6_7090' => 'ppa', 'Prupe.5G139900' => 'ppe', 'Psat1g166880' => 'psa', 'Psat7g092640' => 'psa', 'PSO170G0793' => 'pso', 'PSO455G0186' => 'pso', 'PSO675G1950' => 'pso', 'PSO732G0166' => 'pso', 'QL10p000231' => 'qlo', 'QL10p000238' => 'qlo', 'QL10p000256' => 'qlo', 'QL10p000264' => 'qlo', 'RcHm_v2.0_Chr1g0356321' => 'rch', 'RcHm_v2.0_Chr1g0356331' => 'rch', 'RcHm_v2.0_Chr4g0410211' => 'rch', 'RcHm_v2.0_Chr7g0188461' => 'rch', 'RcHm_v2.0_Chr7g0188471' => 'rch', 'Rhsim08G0199200' => 'rsi', 'Rhsim08G0199300' => 'rsi', 'Rhsim08G0199400' => 'rsi', 'Sabra12G0080300' => 'sbr', 'Sabra12G0080400' => 'sbr', 'Sabra15G0128700' => 'sbr', 'Sabra15G0128800' => 'sbr', 'Sabra15G0128900' => 'sbr', 'Sabra15G0131000' => 'sbr', 'Sabra15G0131100' => 'sbr', 'SalBow1G3989' => 'sbo', 'SalBow7G2038' => 'sbo', 'Sc20g0007430' => 'sci', 'Sc20g0007450' => 'sci', 'Sed0006436' => 'sed', 'Sed0010042' => 'sed', 'Sed0020427' => 'sed', 'Sed0023120' => 'sed', 'SEGI_10022' => 'sgi', 'SEGI_18198' => 'sgi', 'SEGI_20435' => 'sgi', 'SEGI_21186' => 'sgi', 'SEGI_28934' => 'sgi', 'SEGI_36732' => 'sgi', 'SGA_v2.0_scaffold37G14668' => 'sas', 'SMO230G0101' => 'smo', 'SMO367G0006' => 'smo', 'SMO367G0266' => 'smo', 'SMO367G0341' => 'smo', 'SMO367G0697' => 'smo', 'Solyc06g068730.1' => 'sly', 'Solyc12g042380.2' => 'sly', 'Sopen06g026010' => 'spe', 'Sopen12g021330' => 'spe', 'Sp2g25020' => 'spa', 'TAR371G0624' => 'tar', 'THA.LOC104818287' => 'tha', 'Thecc.03G142200' => 'tca', 'Thhalv10004123m.g' => 'esa', 'Thhalv10004141m.g' => 'esa', 'TPR.G10843' => 'tpr', 'TPR.G11062' => 'tpr', 'TPR.G11371' => 'tpr', 'TPR.G11459' => 'tpr', 'TPR.G19656' => 'tpr', 'TPR.G20481' => 'tpr', 'TPR.G20841' => 'tpr', 'TPR.G22924' => 'tpr', 'TPR.G22925' => 'tpr', 'TPR.G26351' => 'tpr', 'TPR.G26353' => 'tpr', 'TPR.G28448' => 'tpr', 'TPR.G28747' => 'tpr', 'TPR.G29095' => 'tpr', 'TPR.G29101' => 'tpr', 'TPR.G29925' => 'tpr', 'TPR.G30373' => 'tpr', 'TPR.G30382' => 'tpr', 'TPR.G30384' => 'tpr', 'TPR.G30385' => 'tpr', 'TPR.G31363' => 'tpr', 'TPR.G31413' => 'tpr', 'TPR.G35052' => 'tpr', 'TPR.G36540' => 'tpr', 'TPR.G36584' => 'tpr', 'TPR.G39265' => 'tpr', 'TPR.G39324' => 'tpr', 'TPR.G40862' => 'tpr', 'TPR.G4433' => 'tpr', 'TPR.G4450' => 'tpr', 'TPR.G7380' => 'tpr', 'TPR.G9392' => 'tpr', 'TWI23G0045' => 'twi', 'TWI23G0407' => 'twi', 'TWI39G0322' => 'twi', 'TWI39G1180' => 'twi', 'TWI39G1248' => 'twi', 'unitig_899.g14823' => 'ugi', 'vmacro19106' => 'vma', 'vmacro19107' => 'vma', 'vmacro19108' => 'vma', 'VMungo0251G0218' => 'vmu', 'VMungo0331G0150' => 'vmu', 'VMungo0331G0413' => 'vmu', 'VMungo0331G1170' => 'vmu', 'VMungo0331G1188' => 'vmu', 'VMungo0331G1555' => 'vmu', 'VMungo0331G1815' => 'vmu', 'VMungo0540G1993' => 'vmu', 'VMungo0720G2767' => 'vmu', 'Zm00001eb037110' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D001454' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D001454' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D001454' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001454' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D001454', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '404', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p41730' => 'bna', 'A06p28470' => 'bna', 'Aa31LG11G1670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2550' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2551' => 'aag', 'Actinidia18287' => 'ach', 'Actinidia25508' => 'ach', 'Ah.02g114520' => 'amhyb', 'AL8G38580' => 'aly', 'arahy.Tifrunner.gnm1.ann1.05PZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0KCS9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0L3IFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22T31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.26VLVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z06T4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JWJ0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5UJZ6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KNN82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VD73D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAI5H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA0H5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G83ENS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKN5US' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IB48BU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDIH96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME8Z3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KK0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAUB69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL6XLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM4CKL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DYAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR5QKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSR2Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1W2M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZV0AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y24I4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YULU3C' => 'arhy', 'AT5G61820' => 'ath', 'ATR0582G142' => 'atr', 'ATR0582G262' => 'atr', 'ATR0582G326' => 'atr', 'ATR0582G349' => 'atr', 'Atru.chr6.1941' => 'acertr', 'AUR62032204' => 'cqu', 'AUR62036973' => 'cqu', 'AUR62043381' => 'cqu', 'BcaB02g09604' => 'bca', 'BcaB07g29819' => 'bca', 'BcaC01g02434' => 'bca', 'BcaC01g02435' => 'bca', 'BcaC01g02436' => 'bca', 'BcaC01g02438' => 'bca', 'BcaC03g18098' => 'bca', 'BolC2t12223H' => 'bol', 'BolC3t18782H' => 'bol', 'BolC3t18788H' => 'bol', 'BolC3t18789H' => 'bol', 'BraA02t09113Z' => 'bra', 'BraA06t25791Z' => 'bra', 'C02p61650' => 'bna', 'C03p65290' => 'bna', 'C03p65330' => 'bna', 'C03p65340' => 'bna', 'CAN.G1089.12' => 'can', 'CAN.G1089.13' => 'can', 'CAN.G313.16' => 'can', 'CAN.G416.58' => 'can', 'CAN.G416.59' => 'can', 'CAN.G416.60' => 'can', 'CAN.G416.61' => 'can', 'CAN.G47.3' => 'can', 'CAN.G758.11' => 'can', 'CANSAT56G0376' => 'cansat', 'CANSAT56G1144' => 'cansat', 'CANSAT56G1598' => 'cansat', 'CARHR275580' => 'chi', 'Carub.0008s2251' => 'cru', 'Carub.0008s2252' => 'cru', 'Ca_03348_v3' => 'car', 'Ca_11099_v3' => 'car', 'Ca_12129_v3' => 'car', 'Ca_18289_v3' => 'car', 'Ca_20127_v3' => 'car', 'Ca_20204_v3' => 'car', 'Ca_23126_v3' => 'car', 'Ca_25256_v3' => 'car', 'Cc04_g05720' => 'ccan', 'Cc04_g05730' => 'ccan', 'Ciclev10031458m.g' => 'ccl', 'Ciclev10031461m.g' => 'ccl', 'CiPaw.01G033000' => 'cil', 'CiPaw.01G033200' => 'cil', 'CiPaw.01G033400' => 'cil', 'CiPaw.01G033600' => 'cil', 'ClCG02G007420' => 'cla', 'ClCG06G014510' => 'cla', 'ClCG06G014570' => 'cla', 'COL.COLO4_37273' => 'col', 'Cpa.g.sc13.188' => 'cpa', 'CsaV3_1G004040' => 'csa', 'CsaV3_1G004050' => 'csa', 'CsaV3_1G004060' => 'csa', 'CsaV3_7G007480' => 'csa', 'CsaV3_7G007490' => 'csa', 'CSS0010069' => 'camsi', 'CSS0013606' => 'camsi', 'DCAR_009629' => 'dca', 'DCAR_009630' => 'dca', 'DCAR_021392' => 'dca', 'DCAR_021557' => 'dca', 'Dinv13705' => 'din', 'Dinv13706' => 'din', 'Dinv23238' => 'din', 'Duzib068G0886' => 'dzi', 'Duzib084G0249' => 'dzi', 'Duzib084G1374' => 'dzi', 'ECA232G2039' => 'eca', 'ECA232G2628' => 'eca', 'ECA232G4705' => 'eca', 'EL10Ac5g11267' => 'bvu', 'Eucgr.K02186' => 'egr', 'FAN04G1932' => 'fan', 'FAN04G2911' => 'fan', 'FAN08G1324' => 'fan', 'FAN13G0164' => 'fan', 'FAN13G0254' => 'fan', 'FAN18G1321' => 'fan', 'FvH4_5g09784' => 'fve', 'FvH4_5g09790' => 'fve', 'Glyma.01G121245' => 'gma', 'Glyma.01G121263' => 'gma', 'Glyma.01G121272' => 'gma', 'Glyma.03G057700' => 'gma', 'Glyma.03G071800' => 'gma', 'Glyma.03G071900' => 'gma', 'Glyma.03G075600' => 'gma', 'Glyma.03G078900' => 'gma', 'Glyma.03G115700' => 'gma', 'Glyma.04G118000' => 'gma', 'Glyma.04G118100' => 'gma', 'Glyma.04G118300' => 'gma', 'Glyma.04G118400' => 'gma', 'Glyma.04G143900' => 'gma', 'Glyma.04G144000' => 'gma', 'Glyma.04G144100' => 'gma', 'Glyma.04G144200' => 'gma', 'Glyma.05G126700' => 'gma', 'Glyma.05G126750' => 'gma', 'Glyma.05G126800' => 'gma', 'Glyma.05G126900' => 'gma', 'Glyma.08G081700' => 'gma', 'Glyma.08G081801' => 'gma', 'Glyma.09G025200' => 'gma', 'Glyma.15G131300' => 'gma', 'Glyma.15G131400' => 'gma', 'Glyma.U008700' => 'gma', 'Gohir.A07G046200' => 'ghi', 'Gohir.A12G194200' => 'ghi', 'Gohir.A12G194300' => 'ghi', 'Gohir.D07G050500' => 'ghi', 'Gohir.D12G196700' => 'ghi', 'Gohir.D12G196800' => 'ghi', 'Gorai.001G053600' => 'gra', 'Gorai.008G211300' => 'gra', 'Gorai.008G211400' => 'gra', 'GSVIVG01008668001' => 'vvi', 'HanXRQChr03g0061641' => 'han', 'HanXRQChr09g0273761' => 'han', 'HanXRQChr09g0273771' => 'han', 'HanXRQChr09g0274011' => 'han', 'HanXRQChr09g0274391' => 'han', 'HanXRQChr09g0274401' => 'han', 'Haze_15134' => 'cav', 'Hma1.2p1_0452F.1_g155860' => 'hma', 'Hma1.2p1_0452F.1_g155870' => 'hma', 'Hma1.2p1_1242F.1_g269910' => 'hma', 'Hma1.2p1_1242F.1_g269920' => 'hma', 'HPP92_000324' => 'vpl', 'HPP92_025301' => 'vpl', 'HPP92_025302' => 'vpl', 'HPP92_025310' => 'vpl', 'Hund10011' => 'sun', 'Hund10022' => 'sun', 'Lalb_Chr07g0188971' => 'lal', 'Lalb_Chr07g0188991' => 'lal', 'Lalb_Chr12g0203891' => 'lal', 'Lalb_Chr12g0203901' => 'lal', 'Lalb_Chr12g0208811' => 'lal', 'Lalb_Chr18g0058041' => 'lal', 'Lalb_Chr19g0126631' => 'lal', 'Lj1g0015663' => 'lja', 'Lj3g0000025' => 'lja', 'Lj3g0007615' => 'lja', 'Lj3g0013305' => 'lja', 'Lj3g0017932' => 'lja', 'Lj3g0018933' => 'lja', 'Lj3g0020835' => 'lja', 'Lj4g0016919' => 'lja', 'Lj4g0019194' => 'lja', 'Lj5A85T114' => 'lonja', 'Lj5g0019809' => 'lja', 'Lj5g0025155' => 'lja', 'Lj6g0019617' => 'lja', 'Lj9A488T62' => 'lonja', 'Lsat_1_v5_gn_4_84201' => 'lsa', 'Lsat_1_v5_gn_4_84241' => 'lsa', 'Lsat_1_v5_gn_4_84261' => 'lsa', 'Manes.06G127700' => 'mes', 'Mapoly0002s0344' => 'mpo', 'Mapoly0002s0345' => 'mpo', 'Mapoly0002s0346' => 'mpo', 'Mapoly0005s0246' => 'mpo', 'Mapoly0066s0047' => 'mpo', 'MBI07_g13948_MAGBIO' => 'mbi', 'MBI07_g13949_MAGBIO' => 'mbi', 'MBI07_g13950_MAGBIO' => 'mbi', 'MBI07_g13951_MAGBIO' => 'mbi', 'MBI07_g13952_MAGBIO' => 'mbi', 'MBI07_g13954_MAGBIO' => 'mbi', 'MD00G1075600' => 'mdo', 'MD00G1075700' => 'mdo', 'MD00G1129500' => 'mdo', 'MD14G1145300' => 'mdo', 'MD14G1145500' => 'mdo', 'MD14G1145600' => 'mdo', 'Medtr0083s0100' => 'mtr', 'Medtr1g035220' => 'mtr', 'Medtr1g052640' => 'mtr', 'Medtr1g062750' => 'mtr', 'Medtr2g030460' => 'mtr', 'Medtr2g030470' => 'mtr', 'Medtr2g030480' => 'mtr', 'Medtr3g035040' => 'mtr', 'Medtr4g094548' => 'mtr', 'Medtr4g094550' => 'mtr', 'Medtr4g094555' => 'mtr', 'Medtr4g094560' => 'mtr', 'Medtr4g094562' => 'mtr', 'Medtr4g094565' => 'mtr', 'Medtr4g094570' => 'mtr', 'Medtr6g048310' => 'mtr', 'Medtr6g048350' => 'mtr', 'Medtr6g089930' => 'mtr', 'Medtr6g090090' => 'mtr', 'Medtr8g039300' => 'mtr', 'MELO3C017327.2' => 'cme', 'MELO3C017328.2' => 'cme', 'MELO3C017329.2' => 'cme', 'MELO3C017331.2' => 'cme', 'MELO3C017332.2' => 'cme', 'MELO3C018553.2' => 'cme', 'Migut.D01172' => 'egut', 'Migut.I00660' => 'egut', 'MSTRG.11203' => 'ama', 'MSTRG.9378' => 'ama', 'Nitab4.5_0001614g0010' => 'nta', 'Nitab4.5_0002540g0040' => 'nta', 'Nitab4.5_0003278g0020' => 'nta', 'Nitab4.5_0007345g0030' => 'nta', 'Nitab4.5_0008229g0010' => 'nta', 'Nitab4.5_0014513g0030' => 'nta', 'Nn1g02121' => 'nnu', 'Oeu046598.1' => 'oeu', 'Oeu051181.1' => 'oeu', 'Os08g0538600' => 'osa', 'Peaxi162Scf00207g00232' => 'pax', 'Peaxi162Scf00628g00076' => 'pax', 'Peaxi162Scf00835g00326' => 'pax', 'PGR102G1961' => 'pgr', 'PGR102G2003' => 'pgr', 'PGSC0003DMG400014468' => 'stu', 'PGSC0003DMG400014470' => 'stu', 'PGSC0003DMG400020037' => 'stu', 'Phvul.002G197800' => 'pvu', 'Phvul.006G127300' => 'pvu', 'Phvul.006G127400' => 'pvu', 'Phvul.009G165400' => 'pvu', 'Phvul.010G000800' => 'pvu', 'Phvul.010G017500' => 'pvu', 'Phvul.010G017800' => 'pvu', 'Phvul.010G017900' => 'pvu', 'Phvul.010G018100' => 'pvu', 'Phvul.010G022300' => 'pvu', 'Phvul.010G022500' => 'pvu', 'Phvul.010G035300' => 'pvu', 'Phvul.010G035400' => 'pvu', 'Phvul.010G035700' => 'pvu', 'Phvul.011G142100' => 'pvu', 'Potri.012G110300' => 'ptr', 'Potri.012G110600' => 'ptr', 'Potri.015G108500' => 'ptr', 'Potri.015G108600' => 'ptr', 'Potri.015G108700' => 'ptr', 'Potri.015G108800' => 'ptr', 'Pp3c10_17760' => 'ppa', 'Pp3c19_20840' => 'ppa', 'Pp3c6_7090' => 'ppa', 'Prupe.5G139900' => 'ppe', 'Psat1g166880' => 'psa', 'Psat7g092640' => 'psa', 'PSO170G0793' => 'pso', 'PSO455G0186' => 'pso', 'PSO675G1950' => 'pso', 'PSO732G0166' => 'pso', 'QL10p000231' => 'qlo', 'QL10p000238' => 'qlo', 'QL10p000256' => 'qlo', 'QL10p000264' => 'qlo', 'RcHm_v2.0_Chr1g0356321' => 'rch', 'RcHm_v2.0_Chr1g0356331' => 'rch', 'RcHm_v2.0_Chr4g0410211' => 'rch', 'RcHm_v2.0_Chr7g0188461' => 'rch', 'RcHm_v2.0_Chr7g0188471' => 'rch', 'Rhsim08G0199200' => 'rsi', 'Rhsim08G0199300' => 'rsi', 'Rhsim08G0199400' => 'rsi', 'Sabra12G0080300' => 'sbr', 'Sabra12G0080400' => 'sbr', 'Sabra15G0128700' => 'sbr', 'Sabra15G0128800' => 'sbr', 'Sabra15G0128900' => 'sbr', 'Sabra15G0131000' => 'sbr', 'Sabra15G0131100' => 'sbr', 'SalBow1G3989' => 'sbo', 'SalBow7G2038' => 'sbo', 'Sc20g0007430' => 'sci', 'Sc20g0007450' => 'sci', 'Sed0006436' => 'sed', 'Sed0010042' => 'sed', 'Sed0020427' => 'sed', 'Sed0023120' => 'sed', 'SEGI_10022' => 'sgi', 'SEGI_18198' => 'sgi', 'SEGI_20435' => 'sgi', 'SEGI_21186' => 'sgi', 'SEGI_28934' => 'sgi', 'SEGI_36732' => 'sgi', 'SGA_v2.0_scaffold37G14668' => 'sas', 'SMO230G0101' => 'smo', 'SMO367G0006' => 'smo', 'SMO367G0266' => 'smo', 'SMO367G0341' => 'smo', 'SMO367G0697' => 'smo', 'Solyc06g068730.1' => 'sly', 'Solyc12g042380.2' => 'sly', 'Sopen06g026010' => 'spe', 'Sopen12g021330' => 'spe', 'Sp2g25020' => 'spa', 'TAR371G0624' => 'tar', 'THA.LOC104818287' => 'tha', 'Thecc.03G142200' => 'tca', 'Thhalv10004123m.g' => 'esa', 'Thhalv10004141m.g' => 'esa', 'TPR.G10843' => 'tpr', 'TPR.G11062' => 'tpr', 'TPR.G11371' => 'tpr', 'TPR.G11459' => 'tpr', 'TPR.G19656' => 'tpr', 'TPR.G20481' => 'tpr', 'TPR.G20841' => 'tpr', 'TPR.G22924' => 'tpr', 'TPR.G22925' => 'tpr', 'TPR.G26351' => 'tpr', 'TPR.G26353' => 'tpr', 'TPR.G28448' => 'tpr', 'TPR.G28747' => 'tpr', 'TPR.G29095' => 'tpr', 'TPR.G29101' => 'tpr', 'TPR.G29925' => 'tpr', 'TPR.G30373' => 'tpr', 'TPR.G30382' => 'tpr', 'TPR.G30384' => 'tpr', 'TPR.G30385' => 'tpr', 'TPR.G31363' => 'tpr', 'TPR.G31413' => 'tpr', 'TPR.G35052' => 'tpr', 'TPR.G36540' => 'tpr', 'TPR.G36584' => 'tpr', 'TPR.G39265' => 'tpr', 'TPR.G39324' => 'tpr', 'TPR.G40862' => 'tpr', 'TPR.G4433' => 'tpr', 'TPR.G4450' => 'tpr', 'TPR.G7380' => 'tpr', 'TPR.G9392' => 'tpr', 'TWI23G0045' => 'twi', 'TWI23G0407' => 'twi', 'TWI39G0322' => 'twi', 'TWI39G1180' => 'twi', 'TWI39G1248' => 'twi', 'unitig_899.g14823' => 'ugi', 'vmacro19106' => 'vma', 'vmacro19107' => 'vma', 'vmacro19108' => 'vma', 'VMungo0251G0218' => 'vmu', 'VMungo0331G0150' => 'vmu', 'VMungo0331G0413' => 'vmu', 'VMungo0331G1170' => 'vmu', 'VMungo0331G1188' => 'vmu', 'VMungo0331G1555' => 'vmu', 'VMungo0331G1815' => 'vmu', 'VMungo0540G1993' => 'vmu', 'VMungo0720G2767' => 'vmu', 'Zm00001eb037110' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D001454', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D001454' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D001454', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '404', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001454' ) ), 'genes' => array( 'A02p41730' => 'bna', 'A06p28470' => 'bna', 'Aa31LG11G1670' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2550' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2551' => 'aag', 'Actinidia18287' => 'ach', 'Actinidia25508' => 'ach', 'Ah.02g114520' => 'amhyb', 'AL8G38580' => 'aly', 'arahy.Tifrunner.gnm1.ann1.05PZ0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0KCS9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0L3IFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.22T31V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.26VLVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z06T4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5JWJ0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5UJZ6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KNN82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VD73D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAI5H8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA0H5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G83ENS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HKN5US' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IB48BU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDIH96' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ME8Z3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8KK0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAUB69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RL6XLT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SM4CKL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7DYAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR5QKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WSR2Q0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1W2M3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XZV0AU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y24I4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YULU3C' => 'arhy', 'AT5G61820' => 'ath', 'ATR0582G142' => 'atr', 'ATR0582G262' => 'atr', 'ATR0582G326' => 'atr', 'ATR0582G349' => 'atr', 'Atru.chr6.1941' => 'acertr', 'AUR62032204' => 'cqu', 'AUR62036973' => 'cqu', 'AUR62043381' => 'cqu', 'BcaB02g09604' => 'bca', 'BcaB07g29819' => 'bca', 'BcaC01g02434' => 'bca', 'BcaC01g02435' => 'bca', 'BcaC01g02436' => 'bca', 'BcaC01g02438' => 'bca', 'BcaC03g18098' => 'bca', 'BolC2t12223H' => 'bol', 'BolC3t18782H' => 'bol', 'BolC3t18788H' => 'bol', 'BolC3t18789H' => 'bol', 'BraA02t09113Z' => 'bra', 'BraA06t25791Z' => 'bra', 'C02p61650' => 'bna', 'C03p65290' => 'bna', 'C03p65330' => 'bna', 'C03p65340' => 'bna', 'CAN.G1089.12' => 'can', 'CAN.G1089.13' => 'can', 'CAN.G313.16' => 'can', 'CAN.G416.58' => 'can', 'CAN.G416.59' => 'can', 'CAN.G416.60' => 'can', 'CAN.G416.61' => 'can', 'CAN.G47.3' => 'can', 'CAN.G758.11' => 'can', 'CANSAT56G0376' => 'cansat', 'CANSAT56G1144' => 'cansat', 'CANSAT56G1598' => 'cansat', 'CARHR275580' => 'chi', 'Carub.0008s2251' => 'cru', 'Carub.0008s2252' => 'cru', 'Ca_03348_v3' => 'car', 'Ca_11099_v3' => 'car', 'Ca_12129_v3' => 'car', 'Ca_18289_v3' => 'car', 'Ca_20127_v3' => 'car', 'Ca_20204_v3' => 'car', 'Ca_23126_v3' => 'car', 'Ca_25256_v3' => 'car', 'Cc04_g05720' => 'ccan', 'Cc04_g05730' => 'ccan', 'Ciclev10031458m.g' => 'ccl', 'Ciclev10031461m.g' => 'ccl', 'CiPaw.01G033000' => 'cil', 'CiPaw.01G033200' => 'cil', 'CiPaw.01G033400' => 'cil', 'CiPaw.01G033600' => 'cil', 'ClCG02G007420' => 'cla', 'ClCG06G014510' => 'cla', 'ClCG06G014570' => 'cla', 'COL.COLO4_37273' => 'col', 'Cpa.g.sc13.188' => 'cpa', 'CsaV3_1G004040' => 'csa', 'CsaV3_1G004050' => 'csa', 'CsaV3_1G004060' => 'csa', 'CsaV3_7G007480' => 'csa', 'CsaV3_7G007490' => 'csa', 'CSS0010069' => 'camsi', 'CSS0013606' => 'camsi', 'DCAR_009629' => 'dca', 'DCAR_009630' => 'dca', 'DCAR_021392' => 'dca', 'DCAR_021557' => 'dca', 'Dinv13705' => 'din', 'Dinv13706' => 'din', 'Dinv23238' => 'din', 'Duzib068G0886' => 'dzi', 'Duzib084G0249' => 'dzi', 'Duzib084G1374' => 'dzi', 'ECA232G2039' => 'eca', 'ECA232G2628' => 'eca', 'ECA232G4705' => 'eca', 'EL10Ac5g11267' => 'bvu', 'Eucgr.K02186' => 'egr', 'FAN04G1932' => 'fan', 'FAN04G2911' => 'fan', 'FAN08G1324' => 'fan', 'FAN13G0164' => 'fan', 'FAN13G0254' => 'fan', 'FAN18G1321' => 'fan', 'FvH4_5g09784' => 'fve', 'FvH4_5g09790' => 'fve', 'Glyma.01G121245' => 'gma', 'Glyma.01G121263' => 'gma', 'Glyma.01G121272' => 'gma', 'Glyma.03G057700' => 'gma', 'Glyma.03G071800' => 'gma', 'Glyma.03G071900' => 'gma', 'Glyma.03G075600' => 'gma', 'Glyma.03G078900' => 'gma', 'Glyma.03G115700' => 'gma', 'Glyma.04G118000' => 'gma', 'Glyma.04G118100' => 'gma', 'Glyma.04G118300' => 'gma', 'Glyma.04G118400' => 'gma', 'Glyma.04G143900' => 'gma', 'Glyma.04G144000' => 'gma', 'Glyma.04G144100' => 'gma', 'Glyma.04G144200' => 'gma', 'Glyma.05G126700' => 'gma', 'Glyma.05G126750' => 'gma', 'Glyma.05G126800' => 'gma', 'Glyma.05G126900' => 'gma', 'Glyma.08G081700' => 'gma', 'Glyma.08G081801' => 'gma', 'Glyma.09G025200' => 'gma', 'Glyma.15G131300' => 'gma', 'Glyma.15G131400' => 'gma', 'Glyma.U008700' => 'gma', 'Gohir.A07G046200' => 'ghi', 'Gohir.A12G194200' => 'ghi', 'Gohir.A12G194300' => 'ghi', 'Gohir.D07G050500' => 'ghi', 'Gohir.D12G196700' => 'ghi', 'Gohir.D12G196800' => 'ghi', 'Gorai.001G053600' => 'gra', 'Gorai.008G211300' => 'gra', 'Gorai.008G211400' => 'gra', 'GSVIVG01008668001' => 'vvi', 'HanXRQChr03g0061641' => 'han', 'HanXRQChr09g0273761' => 'han', 'HanXRQChr09g0273771' => 'han', 'HanXRQChr09g0274011' => 'han', 'HanXRQChr09g0274391' => 'han', 'HanXRQChr09g0274401' => 'han', 'Haze_15134' => 'cav', 'Hma1.2p1_0452F.1_g155860' => 'hma', 'Hma1.2p1_0452F.1_g155870' => 'hma', 'Hma1.2p1_1242F.1_g269910' => 'hma', 'Hma1.2p1_1242F.1_g269920' => 'hma', 'HPP92_000324' => 'vpl', 'HPP92_025301' => 'vpl', 'HPP92_025302' => 'vpl', 'HPP92_025310' => 'vpl', 'Hund10011' => 'sun', 'Hund10022' => 'sun', 'Lalb_Chr07g0188971' => 'lal', 'Lalb_Chr07g0188991' => 'lal', 'Lalb_Chr12g0203891' => 'lal', 'Lalb_Chr12g0203901' => 'lal', 'Lalb_Chr12g0208811' => 'lal', 'Lalb_Chr18g0058041' => 'lal', 'Lalb_Chr19g0126631' => 'lal', 'Lj1g0015663' => 'lja', 'Lj3g0000025' => 'lja', 'Lj3g0007615' => 'lja', 'Lj3g0013305' => 'lja', 'Lj3g0017932' => 'lja', 'Lj3g0018933' => 'lja', 'Lj3g0020835' => 'lja', 'Lj4g0016919' => 'lja', 'Lj4g0019194' => 'lja', 'Lj5A85T114' => 'lonja', 'Lj5g0019809' => 'lja', 'Lj5g0025155' => 'lja', 'Lj6g0019617' => 'lja', 'Lj9A488T62' => 'lonja', 'Lsat_1_v5_gn_4_84201' => 'lsa', 'Lsat_1_v5_gn_4_84241' => 'lsa', 'Lsat_1_v5_gn_4_84261' => 'lsa', 'Manes.06G127700' => 'mes', 'Mapoly0002s0344' => 'mpo', 'Mapoly0002s0345' => 'mpo', 'Mapoly0002s0346' => 'mpo', 'Mapoly0005s0246' => 'mpo', 'Mapoly0066s0047' => 'mpo', 'MBI07_g13948_MAGBIO' => 'mbi', 'MBI07_g13949_MAGBIO' => 'mbi', 'MBI07_g13950_MAGBIO' => 'mbi', 'MBI07_g13951_MAGBIO' => 'mbi', 'MBI07_g13952_MAGBIO' => 'mbi', 'MBI07_g13954_MAGBIO' => 'mbi', 'MD00G1075600' => 'mdo', 'MD00G1075700' => 'mdo', 'MD00G1129500' => 'mdo', 'MD14G1145300' => 'mdo', 'MD14G1145500' => 'mdo', 'MD14G1145600' => 'mdo', 'Medtr0083s0100' => 'mtr', 'Medtr1g035220' => 'mtr', 'Medtr1g052640' => 'mtr', 'Medtr1g062750' => 'mtr', 'Medtr2g030460' => 'mtr', 'Medtr2g030470' => 'mtr', 'Medtr2g030480' => 'mtr', 'Medtr3g035040' => 'mtr', 'Medtr4g094548' => 'mtr', 'Medtr4g094550' => 'mtr', 'Medtr4g094555' => 'mtr', 'Medtr4g094560' => 'mtr', 'Medtr4g094562' => 'mtr', 'Medtr4g094565' => 'mtr', 'Medtr4g094570' => 'mtr', 'Medtr6g048310' => 'mtr', 'Medtr6g048350' => 'mtr', 'Medtr6g089930' => 'mtr', 'Medtr6g090090' => 'mtr', 'Medtr8g039300' => 'mtr', 'MELO3C017327.2' => 'cme', 'MELO3C017328.2' => 'cme', 'MELO3C017329.2' => 'cme', 'MELO3C017331.2' => 'cme', 'MELO3C017332.2' => 'cme', 'MELO3C018553.2' => 'cme', 'Migut.D01172' => 'egut', 'Migut.I00660' => 'egut', 'MSTRG.11203' => 'ama', 'MSTRG.9378' => 'ama', 'Nitab4.5_0001614g0010' => 'nta', 'Nitab4.5_0002540g0040' => 'nta', 'Nitab4.5_0003278g0020' => 'nta', 'Nitab4.5_0007345g0030' => 'nta', 'Nitab4.5_0008229g0010' => 'nta', 'Nitab4.5_0014513g0030' => 'nta', 'Nn1g02121' => 'nnu', 'Oeu046598.1' => 'oeu', 'Oeu051181.1' => 'oeu', 'Os08g0538600' => 'osa', 'Peaxi162Scf00207g00232' => 'pax', 'Peaxi162Scf00628g00076' => 'pax', 'Peaxi162Scf00835g00326' => 'pax', 'PGR102G1961' => 'pgr', 'PGR102G2003' => 'pgr', 'PGSC0003DMG400014468' => 'stu', 'PGSC0003DMG400014470' => 'stu', 'PGSC0003DMG400020037' => 'stu', 'Phvul.002G197800' => 'pvu', 'Phvul.006G127300' => 'pvu', 'Phvul.006G127400' => 'pvu', 'Phvul.009G165400' => 'pvu', 'Phvul.010G000800' => 'pvu', 'Phvul.010G017500' => 'pvu', 'Phvul.010G017800' => 'pvu', 'Phvul.010G017900' => 'pvu', 'Phvul.010G018100' => 'pvu', 'Phvul.010G022300' => 'pvu', 'Phvul.010G022500' => 'pvu', 'Phvul.010G035300' => 'pvu', 'Phvul.010G035400' => 'pvu', 'Phvul.010G035700' => 'pvu', 'Phvul.011G142100' => 'pvu', 'Potri.012G110300' => 'ptr', 'Potri.012G110600' => 'ptr', 'Potri.015G108500' => 'ptr', 'Potri.015G108600' => 'ptr', 'Potri.015G108700' => 'ptr', 'Potri.015G108800' => 'ptr', 'Pp3c10_17760' => 'ppa', 'Pp3c19_20840' => 'ppa', 'Pp3c6_7090' => 'ppa', 'Prupe.5G139900' => 'ppe', 'Psat1g166880' => 'psa', 'Psat7g092640' => 'psa', 'PSO170G0793' => 'pso', 'PSO455G0186' => 'pso', 'PSO675G1950' => 'pso', 'PSO732G0166' => 'pso', 'QL10p000231' => 'qlo', 'QL10p000238' => 'qlo', 'QL10p000256' => 'qlo', 'QL10p000264' => 'qlo', 'RcHm_v2.0_Chr1g0356321' => 'rch', 'RcHm_v2.0_Chr1g0356331' => 'rch', 'RcHm_v2.0_Chr4g0410211' => 'rch', 'RcHm_v2.0_Chr7g0188461' => 'rch', 'RcHm_v2.0_Chr7g0188471' => 'rch', 'Rhsim08G0199200' => 'rsi', 'Rhsim08G0199300' => 'rsi', 'Rhsim08G0199400' => 'rsi', 'Sabra12G0080300' => 'sbr', 'Sabra12G0080400' => 'sbr', 'Sabra15G0128700' => 'sbr', 'Sabra15G0128800' => 'sbr', 'Sabra15G0128900' => 'sbr', 'Sabra15G0131000' => 'sbr', 'Sabra15G0131100' => 'sbr', 'SalBow1G3989' => 'sbo', 'SalBow7G2038' => 'sbo', 'Sc20g0007430' => 'sci', 'Sc20g0007450' => 'sci', 'Sed0006436' => 'sed', 'Sed0010042' => 'sed', 'Sed0020427' => 'sed', 'Sed0023120' => 'sed', 'SEGI_10022' => 'sgi', 'SEGI_18198' => 'sgi', 'SEGI_20435' => 'sgi', 'SEGI_21186' => 'sgi', 'SEGI_28934' => 'sgi', 'SEGI_36732' => 'sgi', 'SGA_v2.0_scaffold37G14668' => 'sas', 'SMO230G0101' => 'smo', 'SMO367G0006' => 'smo', 'SMO367G0266' => 'smo', 'SMO367G0341' => 'smo', 'SMO367G0697' => 'smo', 'Solyc06g068730.1' => 'sly', 'Solyc12g042380.2' => 'sly', 'Sopen06g026010' => 'spe', 'Sopen12g021330' => 'spe', 'Sp2g25020' => 'spa', 'TAR371G0624' => 'tar', 'THA.LOC104818287' => 'tha', 'Thecc.03G142200' => 'tca', 'Thhalv10004123m.g' => 'esa', 'Thhalv10004141m.g' => 'esa', 'TPR.G10843' => 'tpr', 'TPR.G11062' => 'tpr', 'TPR.G11371' => 'tpr', 'TPR.G11459' => 'tpr', 'TPR.G19656' => 'tpr', 'TPR.G20481' => 'tpr', 'TPR.G20841' => 'tpr', 'TPR.G22924' => 'tpr', 'TPR.G22925' => 'tpr', 'TPR.G26351' => 'tpr', 'TPR.G26353' => 'tpr', 'TPR.G28448' => 'tpr', 'TPR.G28747' => 'tpr', 'TPR.G29095' => 'tpr', 'TPR.G29101' => 'tpr', 'TPR.G29925' => 'tpr', 'TPR.G30373' => 'tpr', 'TPR.G30382' => 'tpr', 'TPR.G30384' => 'tpr', 'TPR.G30385' => 'tpr', 'TPR.G31363' => 'tpr', 'TPR.G31413' => 'tpr', 'TPR.G35052' => 'tpr', 'TPR.G36540' => 'tpr', 'TPR.G36584' => 'tpr', 'TPR.G39265' => 'tpr', 'TPR.G39324' => 'tpr', 'TPR.G40862' => 'tpr', 'TPR.G4433' => 'tpr', 'TPR.G4450' => 'tpr', 'TPR.G7380' => 'tpr', 'TPR.G9392' => 'tpr', 'TWI23G0045' => 'twi', 'TWI23G0407' => 'twi', 'TWI39G0322' => 'twi', 'TWI39G1180' => 'twi', 'TWI39G1248' => 'twi', 'unitig_899.g14823' => 'ugi', 'vmacro19106' => 'vma', 'vmacro19107' => 'vma', 'vmacro19108' => 'vma', 'VMungo0251G0218' => 'vmu', 'VMungo0331G0150' => 'vmu', 'VMungo0331G0413' => 'vmu', 'VMungo0331G1170' => 'vmu', 'VMungo0331G1188' => 'vmu', 'VMungo0331G1555' => 'vmu', 'VMungo0331G1815' => 'vmu', 'VMungo0540G1993' => 'vmu', 'VMungo0720G2767' => 'vmu', 'Zm00001eb037110' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D001454' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D001454' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D001454' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001454' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151