Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002273', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '296', 'num_species' => '33' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'Actinidia02878' => 'ach', 'Actinidia12852' => 'ach', 'Actinidia27496' => 'ach', 'Actinidia35859' => 'ach', 'Actinidia35860' => 'ach', 'Aqoxy1G02125' => 'aox', 'Aqoxy1G02128' => 'aox', 'Aqoxy1G03845' => 'aox', 'Aqoxy1G04001' => 'aox', 'Aqoxy2G03725' => 'aox', 'Aqoxy2G03726' => 'aox', 'Aqoxy3G00237' => 'aox', 'Aqoxy4G00735' => 'aox', 'Aqoxy4G03043' => 'aox', 'Aqoxy4G03044' => 'aox', 'Aqoxy4G03045' => 'aox', 'Aqoxy4G03046' => 'aox', 'Aqoxy5G01441' => 'aox', 'Aqoxy5G01442' => 'aox', 'Aqoxy6G00736' => 'aox', 'Aqoxy6G01809' => 'aox', 'Aqoxy6G01812' => 'aox', 'Aqoxy6G01816' => 'aox', 'Aqoxy6G01827' => 'aox', 'ATR0733G186' => 'atr', 'Cc10_g05480' => 'ccan', 'Ciclev10007080m.g' => 'ccl', 'Ciclev10007089m.g' => 'ccl', 'CiPaw.15G046800' => 'cil', 'COL.COLO4_06463' => 'col', 'CSS0000286' => 'camsi', 'CSS0003272' => 'camsi', 'CSS0027661' => 'camsi', 'CSS0048802' => 'camsi', 'CSS0050412' => 'camsi', 'DCAR_013123' => 'dca', 'DCAR_013124' => 'dca', 'DCAR_014540' => 'dca', 'DCAR_027683' => 'dca', 'DCAR_027684' => 'dca', 'Dinv10227' => 'din', 'Dinv12946' => 'din', 'Dinv21990' => 'din', 'Dinv25029' => 'din', 'Dinv27227' => 'din', 'Dinv27228' => 'din', 'Dinv30109' => 'din', 'Duzib114G0913' => 'dzi', 'FAN01G0572' => 'fan', 'FAN02G0546' => 'fan', 'FAN02G0662' => 'fan', 'FAN02G1145' => 'fan', 'FAN02G1455' => 'fan', 'FAN02G1515' => 'fan', 'FAN02G2233' => 'fan', 'FAN02G4400' => 'fan', 'FAN03G0826' => 'fan', 'FAN03G1125' => 'fan', 'FAN03G1740' => 'fan', 'FAN04G1634' => 'fan', 'FAN05G0170' => 'fan', 'FAN05G0328' => 'fan', 'FAN05G1262' => 'fan', 'FAN05G2629' => 'fan', 'FAN05G4822' => 'fan', 'FAN06G2377' => 'fan', 'FAN06G4436' => 'fan', 'FAN07G0263' => 'fan', 'FAN07G0910' => 'fan', 'FAN07G1205' => 'fan', 'FAN07G1398' => 'fan', 'FAN07G2815' => 'fan', 'FAN08G1469' => 'fan', 'FAN09G0900' => 'fan', 'FAN09G3910' => 'fan', 'FAN10G1670' => 'fan', 'FAN10G2973' => 'fan', 'FAN10G3567' => 'fan', 'FAN11G0922' => 'fan', 'FAN11G1057' => 'fan', 'FAN11G1149' => 'fan', 'FAN11G1256' => 'fan', 'FAN11G1309' => 'fan', 'FAN11G3011' => 'fan', 'FAN11G3345' => 'fan', 'FAN11G3570' => 'fan', 'FAN11G3950' => 'fan', 'FAN12G1031' => 'fan', 'FAN12G3884' => 'fan', 'FAN13G0296' => 'fan', 'FAN14G0680' => 'fan', 'FAN14G1144' => 'fan', 'FAN14G2176' => 'fan', 'FAN14G3798' => 'fan', 'FAN15G0207' => 'fan', 'FAN15G1613' => 'fan', 'FAN15G1965' => 'fan', 'FAN15G2793' => 'fan', 'FAN16G0184' => 'fan', 'FAN16G1476' => 'fan', 'FAN16G3165' => 'fan', 'FAN16G3222' => 'fan', 'FAN16G3530' => 'fan', 'FAN17G0544' => 'fan', 'FAN18G0741' => 'fan', 'FAN21G0324' => 'fan', 'FAN21G0335' => 'fan', 'FAN21G1445' => 'fan', 'FAN21G1655' => 'fan', 'FAN21G2209' => 'fan', 'FAN21G2498' => 'fan', 'FAN21G3370' => 'fan', 'FAN22G0528' => 'fan', 'FAN22G1558' => 'fan', 'FAN22G1927' => 'fan', 'FAN22G1946' => 'fan', 'FAN23G0636' => 'fan', 'FAN23G2472' => 'fan', 'FAN23G2564' => 'fan', 'FAN25G0350' => 'fan', 'FAN25G1038' => 'fan', 'FAN25G1613' => 'fan', 'FAN25G2869' => 'fan', 'FAN25G3026' => 'fan', 'FAN25G3717' => 'fan', 'FAN25G3871' => 'fan', 'FAN26G2395' => 'fan', 'FAN26G3059' => 'fan', 'FAN27G2306' => 'fan', 'FAN28G1576' => 'fan', 'FvH4_3g05260' => 'fve', 'FvH4_3g05270' => 'fve', 'FvH4_3g06260' => 'fve', 'FvH4_3g09690' => 'fve', 'FvH4_3g12570' => 'fve', 'FvH4_3g33270' => 'fve', 'FvH4_3g33350' => 'fve', 'FvH4_3g38380' => 'fve', 'FvH4_3g39340' => 'fve', 'FvH4_4g13771' => 'fve', 'FvH4_4g13850' => 'fve', 'FvH4_4g13861' => 'fve', 'FvH4_4g13862' => 'fve', 'FvH4_4g13890' => 'fve', 'FvH4_4g13901' => 'fve', 'FvH4_5g24920' => 'fve', 'FvH4_5g30520' => 'fve', 'FvH4_6g07600' => 'fve', 'FvH4_6g07650' => 'fve', 'FvH4_6g09400' => 'fve', 'FvH4_6g09680' => 'fve', 'FvH4_6g09681' => 'fve', 'FvH4_6g09690' => 'fve', 'FvH4_6g20761' => 'fve', 'FvH4_6g20955' => 'fve', 'FvH4_6g47541' => 'fve', 'FvH4_7g19271' => 'fve', 'FvH4_7g19272' => 'fve', 'FvH4_7g19290' => 'fve', 'GSVIVG01005600001' => 'vvi', 'GSVIVG01006146001' => 'vvi', 'GSVIVG01022445001' => 'vvi', 'GSVIVG01022447001' => 'vvi', 'GSVIVG01022448001' => 'vvi', 'GSVIVG01022452001' => 'vvi', 'GSVIVG01022453001' => 'vvi', 'GSVIVG01031558001' => 'vvi', 'GSVIVG01037123001' => 'vvi', 'GSVIVG01037127001' => 'vvi', 'GSVIVG01037129001' => 'vvi', 'GSVIVG01037130001' => 'vvi', 'HanXRQChr07g0185521' => 'han', 'Hma1.2p1_0383F.1_g140320' => 'hma', 'Hma1.2p1_0383F.1_g140340' => 'hma', 'Hma1.2p1_0383F.1_g140410' => 'hma', 'Hma1.2p1_0383F.1_g140440' => 'hma', 'Hma1.2p1_1223F.1_g268330' => 'hma', 'Hma1.2p1_2122F.1_g314510' => 'hma', 'HPP92_012197' => 'vpl', 'HPP92_012335' => 'vpl', 'HPP92_013914' => 'vpl', 'HPP92_013915' => 'vpl', 'HPP92_013985' => 'vpl', 'HPP92_013986' => 'vpl', 'HPP92_015686' => 'vpl', 'HPP92_015687' => 'vpl', 'HPP92_018671' => 'vpl', 'HPP92_018672' => 'vpl', 'HPP92_018673' => 'vpl', 'HPP92_018689' => 'vpl', 'HPP92_018690' => 'vpl', 'HPP92_018691' => 'vpl', 'HPP92_019492' => 'vpl', 'Lj3P407T43' => 'lonja', 'Lj6A535G33' => 'lonja', 'Lj6A536G23' => 'lonja', 'Lj6A538G37' => 'lonja', 'Lj6A538T41' => 'lonja', 'Lj6A538T42' => 'lonja', 'Lj6A539T24' => 'lonja', 'Lj6A539T25' => 'lonja', 'Lj6A540T15' => 'lonja', 'Lj6A542G10' => 'lonja', 'Lj6C536G5' => 'lonja', 'Lj6C540T3' => 'lonja', 'Lj6C540T4' => 'lonja', 'Lj6C541G0' => 'lonja', 'Lj6C542G4' => 'lonja', 'Lj6C542T3' => 'lonja', 'Lj6C545G2' => 'lonja', 'Lj6C545G3' => 'lonja', 'Lj6E539T1' => 'lonja', 'Lj6E539T2' => 'lonja', 'Lj6P537T6' => 'lonja', 'Lj6P541T5' => 'lonja', 'Lsat_1_v5_gn_6_60060' => 'lsa', 'Lsat_1_v5_gn_6_61000' => 'lsa', 'Lsat_1_v5_gn_6_61060' => 'lsa', 'Manes.13G095200' => 'mes', 'MBI02_g25002_MAGBIO' => 'mbi', 'MBI02_g37275_MAGBIO' => 'mbi', 'MBI18_g28202_MAGBIO' => 'mbi', 'MBI18_g28203_MAGBIO' => 'mbi', 'MD04G1010000' => 'mdo', 'MD07G1173200' => 'mdo', 'Nn1g04477' => 'nnu', 'Nn1g04478' => 'nnu', 'Nn1g06062' => 'nnu', 'Nn1g06063' => 'nnu', 'Nn7g37455' => 'nnu', 'Nn8g40653' => 'nnu', 'Nn8g40654' => 'nnu', 'Os03g0638900' => 'osa', 'Os12g0609900' => 'osa', 'Potri.016G019500' => 'ptr', 'Prupe.1G009600' => 'ppe', 'Prupe.1G010100' => 'ppe', 'Prupe.1G010600' => 'ppe', 'Prupe.1G012400' => 'ppe', 'Prupe.1G012600' => 'ppe', 'Prupe.1G012700' => 'ppe', 'Prupe.1G157200' => 'ppe', 'Prupe.1G157300' => 'ppe', 'Prupe.1G157400' => 'ppe', 'Prupe.1G157500' => 'ppe', 'Prupe.1G157600' => 'ppe', 'Prupe.1G157700' => 'ppe', 'Prupe.1G157900' => 'ppe', 'Prupe.1G158000' => 'ppe', 'Prupe.1G158100' => 'ppe', 'Prupe.1G158200' => 'ppe', 'Prupe.2G138900' => 'ppe', 'Prupe.2G212400' => 'ppe', 'Prupe.5G001500' => 'ppe', 'Prupe.6G053000' => 'ppe', 'QL01p032835' => 'qlo', 'QL02p002659' => 'qlo', 'QL08p005039' => 'qlo', 'QL08p005864' => 'qlo', 'QL08p007653' => 'qlo', 'RcHm_v2.0_Chr1g0363121' => 'rch', 'RcHm_v2.0_Chr1g0363131' => 'rch', 'RcHm_v2.0_Chr1g0363141' => 'rch', 'RcHm_v2.0_Chr1g0363161' => 'rch', 'RcHm_v2.0_Chr3g0459831' => 'rch', 'RcHm_v2.0_Chr3g0460331' => 'rch', 'RcHm_v2.0_Chr3g0476661' => 'rch', 'RcHm_v2.0_Chr4g0385781' => 'rch', 'RcHm_v2.0_Chr4g0385921' => 'rch', 'RcHm_v2.0_Chr4g0414621' => 'rch', 'RcHm_v2.0_Chr4g0414631' => 'rch', 'RcHm_v2.0_Chr4g0414641' => 'rch', 'RcHm_v2.0_Chr4g0414691' => 'rch', 'RcHm_v2.0_Chr4g0415011' => 'rch', 'RcHm_v2.0_Chr4g0415031' => 'rch', 'RcHm_v2.0_Chr5g0013061' => 'rch', 'RcHm_v2.0_Chr5g0014451' => 'rch', 'RcHm_v2.0_Chr6g0265521' => 'rch', 'RcHm_v2.0_Chr6g0265531' => 'rch', 'RcHm_v2.0_Chr6g0308401' => 'rch', 'RcHm_v2.0_Chr7g0215881' => 'rch', 'Rhsim09G0057500' => 'rsi', 'Sabra16G0021500' => 'sbr', 'Sabra16G0021600' => 'sbr', 'Sabra16G0026200' => 'sbr', 'Sabra16G0026300' => 'sbr', 'TAR168G0002' => 'tar', 'TAR371G0597' => 'tar', 'TAR625G1076' => 'tar', 'TAR626G1200' => 'tar', 'Thecc.10G162400' => 'tca', 'vmacro08618' => 'vma', 'vmacro15541' => 'vma', 'vmacro15542' => 'vma', 'vmacro15543' => 'vma', 'vmacro15545' => 'vma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002273', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002273' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002273', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '296', 'num_species' => '33' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002273' ) ), 'genes' => array( 'Actinidia02878' => 'ach', 'Actinidia12852' => 'ach', 'Actinidia27496' => 'ach', 'Actinidia35859' => 'ach', 'Actinidia35860' => 'ach', 'Aqoxy1G02125' => 'aox', 'Aqoxy1G02128' => 'aox', 'Aqoxy1G03845' => 'aox', 'Aqoxy1G04001' => 'aox', 'Aqoxy2G03725' => 'aox', 'Aqoxy2G03726' => 'aox', 'Aqoxy3G00237' => 'aox', 'Aqoxy4G00735' => 'aox', 'Aqoxy4G03043' => 'aox', 'Aqoxy4G03044' => 'aox', 'Aqoxy4G03045' => 'aox', 'Aqoxy4G03046' => 'aox', 'Aqoxy5G01441' => 'aox', 'Aqoxy5G01442' => 'aox', 'Aqoxy6G00736' => 'aox', 'Aqoxy6G01809' => 'aox', 'Aqoxy6G01812' => 'aox', 'Aqoxy6G01816' => 'aox', 'Aqoxy6G01827' => 'aox', 'ATR0733G186' => 'atr', 'Cc10_g05480' => 'ccan', 'Ciclev10007080m.g' => 'ccl', 'Ciclev10007089m.g' => 'ccl', 'CiPaw.15G046800' => 'cil', 'COL.COLO4_06463' => 'col', 'CSS0000286' => 'camsi', 'CSS0003272' => 'camsi', 'CSS0027661' => 'camsi', 'CSS0048802' => 'camsi', 'CSS0050412' => 'camsi', 'DCAR_013123' => 'dca', 'DCAR_013124' => 'dca', 'DCAR_014540' => 'dca', 'DCAR_027683' => 'dca', 'DCAR_027684' => 'dca', 'Dinv10227' => 'din', 'Dinv12946' => 'din', 'Dinv21990' => 'din', 'Dinv25029' => 'din', 'Dinv27227' => 'din', 'Dinv27228' => 'din', 'Dinv30109' => 'din', 'Duzib114G0913' => 'dzi', 'FAN01G0572' => 'fan', 'FAN02G0546' => 'fan', 'FAN02G0662' => 'fan', 'FAN02G1145' => 'fan', 'FAN02G1455' => 'fan', 'FAN02G1515' => 'fan', 'FAN02G2233' => 'fan', 'FAN02G4400' => 'fan', 'FAN03G0826' => 'fan', 'FAN03G1125' => 'fan', 'FAN03G1740' => 'fan', 'FAN04G1634' => 'fan', 'FAN05G0170' => 'fan', 'FAN05G0328' => 'fan', 'FAN05G1262' => 'fan', 'FAN05G2629' => 'fan', 'FAN05G4822' => 'fan', 'FAN06G2377' => 'fan', 'FAN06G4436' => 'fan', 'FAN07G0263' => 'fan', 'FAN07G0910' => 'fan', 'FAN07G1205' => 'fan', 'FAN07G1398' => 'fan', 'FAN07G2815' => 'fan', 'FAN08G1469' => 'fan', 'FAN09G0900' => 'fan', 'FAN09G3910' => 'fan', 'FAN10G1670' => 'fan', 'FAN10G2973' => 'fan', 'FAN10G3567' => 'fan', 'FAN11G0922' => 'fan', 'FAN11G1057' => 'fan', 'FAN11G1149' => 'fan', 'FAN11G1256' => 'fan', 'FAN11G1309' => 'fan', 'FAN11G3011' => 'fan', 'FAN11G3345' => 'fan', 'FAN11G3570' => 'fan', 'FAN11G3950' => 'fan', 'FAN12G1031' => 'fan', 'FAN12G3884' => 'fan', 'FAN13G0296' => 'fan', 'FAN14G0680' => 'fan', 'FAN14G1144' => 'fan', 'FAN14G2176' => 'fan', 'FAN14G3798' => 'fan', 'FAN15G0207' => 'fan', 'FAN15G1613' => 'fan', 'FAN15G1965' => 'fan', 'FAN15G2793' => 'fan', 'FAN16G0184' => 'fan', 'FAN16G1476' => 'fan', 'FAN16G3165' => 'fan', 'FAN16G3222' => 'fan', 'FAN16G3530' => 'fan', 'FAN17G0544' => 'fan', 'FAN18G0741' => 'fan', 'FAN21G0324' => 'fan', 'FAN21G0335' => 'fan', 'FAN21G1445' => 'fan', 'FAN21G1655' => 'fan', 'FAN21G2209' => 'fan', 'FAN21G2498' => 'fan', 'FAN21G3370' => 'fan', 'FAN22G0528' => 'fan', 'FAN22G1558' => 'fan', 'FAN22G1927' => 'fan', 'FAN22G1946' => 'fan', 'FAN23G0636' => 'fan', 'FAN23G2472' => 'fan', 'FAN23G2564' => 'fan', 'FAN25G0350' => 'fan', 'FAN25G1038' => 'fan', 'FAN25G1613' => 'fan', 'FAN25G2869' => 'fan', 'FAN25G3026' => 'fan', 'FAN25G3717' => 'fan', 'FAN25G3871' => 'fan', 'FAN26G2395' => 'fan', 'FAN26G3059' => 'fan', 'FAN27G2306' => 'fan', 'FAN28G1576' => 'fan', 'FvH4_3g05260' => 'fve', 'FvH4_3g05270' => 'fve', 'FvH4_3g06260' => 'fve', 'FvH4_3g09690' => 'fve', 'FvH4_3g12570' => 'fve', 'FvH4_3g33270' => 'fve', 'FvH4_3g33350' => 'fve', 'FvH4_3g38380' => 'fve', 'FvH4_3g39340' => 'fve', 'FvH4_4g13771' => 'fve', 'FvH4_4g13850' => 'fve', 'FvH4_4g13861' => 'fve', 'FvH4_4g13862' => 'fve', 'FvH4_4g13890' => 'fve', 'FvH4_4g13901' => 'fve', 'FvH4_5g24920' => 'fve', 'FvH4_5g30520' => 'fve', 'FvH4_6g07600' => 'fve', 'FvH4_6g07650' => 'fve', 'FvH4_6g09400' => 'fve', 'FvH4_6g09680' => 'fve', 'FvH4_6g09681' => 'fve', 'FvH4_6g09690' => 'fve', 'FvH4_6g20761' => 'fve', 'FvH4_6g20955' => 'fve', 'FvH4_6g47541' => 'fve', 'FvH4_7g19271' => 'fve', 'FvH4_7g19272' => 'fve', 'FvH4_7g19290' => 'fve', 'GSVIVG01005600001' => 'vvi', 'GSVIVG01006146001' => 'vvi', 'GSVIVG01022445001' => 'vvi', 'GSVIVG01022447001' => 'vvi', 'GSVIVG01022448001' => 'vvi', 'GSVIVG01022452001' => 'vvi', 'GSVIVG01022453001' => 'vvi', 'GSVIVG01031558001' => 'vvi', 'GSVIVG01037123001' => 'vvi', 'GSVIVG01037127001' => 'vvi', 'GSVIVG01037129001' => 'vvi', 'GSVIVG01037130001' => 'vvi', 'HanXRQChr07g0185521' => 'han', 'Hma1.2p1_0383F.1_g140320' => 'hma', 'Hma1.2p1_0383F.1_g140340' => 'hma', 'Hma1.2p1_0383F.1_g140410' => 'hma', 'Hma1.2p1_0383F.1_g140440' => 'hma', 'Hma1.2p1_1223F.1_g268330' => 'hma', 'Hma1.2p1_2122F.1_g314510' => 'hma', 'HPP92_012197' => 'vpl', 'HPP92_012335' => 'vpl', 'HPP92_013914' => 'vpl', 'HPP92_013915' => 'vpl', 'HPP92_013985' => 'vpl', 'HPP92_013986' => 'vpl', 'HPP92_015686' => 'vpl', 'HPP92_015687' => 'vpl', 'HPP92_018671' => 'vpl', 'HPP92_018672' => 'vpl', 'HPP92_018673' => 'vpl', 'HPP92_018689' => 'vpl', 'HPP92_018690' => 'vpl', 'HPP92_018691' => 'vpl', 'HPP92_019492' => 'vpl', 'Lj3P407T43' => 'lonja', 'Lj6A535G33' => 'lonja', 'Lj6A536G23' => 'lonja', 'Lj6A538G37' => 'lonja', 'Lj6A538T41' => 'lonja', 'Lj6A538T42' => 'lonja', 'Lj6A539T24' => 'lonja', 'Lj6A539T25' => 'lonja', 'Lj6A540T15' => 'lonja', 'Lj6A542G10' => 'lonja', 'Lj6C536G5' => 'lonja', 'Lj6C540T3' => 'lonja', 'Lj6C540T4' => 'lonja', 'Lj6C541G0' => 'lonja', 'Lj6C542G4' => 'lonja', 'Lj6C542T3' => 'lonja', 'Lj6C545G2' => 'lonja', 'Lj6C545G3' => 'lonja', 'Lj6E539T1' => 'lonja', 'Lj6E539T2' => 'lonja', 'Lj6P537T6' => 'lonja', 'Lj6P541T5' => 'lonja', 'Lsat_1_v5_gn_6_60060' => 'lsa', 'Lsat_1_v5_gn_6_61000' => 'lsa', 'Lsat_1_v5_gn_6_61060' => 'lsa', 'Manes.13G095200' => 'mes', 'MBI02_g25002_MAGBIO' => 'mbi', 'MBI02_g37275_MAGBIO' => 'mbi', 'MBI18_g28202_MAGBIO' => 'mbi', 'MBI18_g28203_MAGBIO' => 'mbi', 'MD04G1010000' => 'mdo', 'MD07G1173200' => 'mdo', 'Nn1g04477' => 'nnu', 'Nn1g04478' => 'nnu', 'Nn1g06062' => 'nnu', 'Nn1g06063' => 'nnu', 'Nn7g37455' => 'nnu', 'Nn8g40653' => 'nnu', 'Nn8g40654' => 'nnu', 'Os03g0638900' => 'osa', 'Os12g0609900' => 'osa', 'Potri.016G019500' => 'ptr', 'Prupe.1G009600' => 'ppe', 'Prupe.1G010100' => 'ppe', 'Prupe.1G010600' => 'ppe', 'Prupe.1G012400' => 'ppe', 'Prupe.1G012600' => 'ppe', 'Prupe.1G012700' => 'ppe', 'Prupe.1G157200' => 'ppe', 'Prupe.1G157300' => 'ppe', 'Prupe.1G157400' => 'ppe', 'Prupe.1G157500' => 'ppe', 'Prupe.1G157600' => 'ppe', 'Prupe.1G157700' => 'ppe', 'Prupe.1G157900' => 'ppe', 'Prupe.1G158000' => 'ppe', 'Prupe.1G158100' => 'ppe', 'Prupe.1G158200' => 'ppe', 'Prupe.2G138900' => 'ppe', 'Prupe.2G212400' => 'ppe', 'Prupe.5G001500' => 'ppe', 'Prupe.6G053000' => 'ppe', 'QL01p032835' => 'qlo', 'QL02p002659' => 'qlo', 'QL08p005039' => 'qlo', 'QL08p005864' => 'qlo', 'QL08p007653' => 'qlo', 'RcHm_v2.0_Chr1g0363121' => 'rch', 'RcHm_v2.0_Chr1g0363131' => 'rch', 'RcHm_v2.0_Chr1g0363141' => 'rch', 'RcHm_v2.0_Chr1g0363161' => 'rch', 'RcHm_v2.0_Chr3g0459831' => 'rch', 'RcHm_v2.0_Chr3g0460331' => 'rch', 'RcHm_v2.0_Chr3g0476661' => 'rch', 'RcHm_v2.0_Chr4g0385781' => 'rch', 'RcHm_v2.0_Chr4g0385921' => 'rch', 'RcHm_v2.0_Chr4g0414621' => 'rch', 'RcHm_v2.0_Chr4g0414631' => 'rch', 'RcHm_v2.0_Chr4g0414641' => 'rch', 'RcHm_v2.0_Chr4g0414691' => 'rch', 'RcHm_v2.0_Chr4g0415011' => 'rch', 'RcHm_v2.0_Chr4g0415031' => 'rch', 'RcHm_v2.0_Chr5g0013061' => 'rch', 'RcHm_v2.0_Chr5g0014451' => 'rch', 'RcHm_v2.0_Chr6g0265521' => 'rch', 'RcHm_v2.0_Chr6g0265531' => 'rch', 'RcHm_v2.0_Chr6g0308401' => 'rch', 'RcHm_v2.0_Chr7g0215881' => 'rch', 'Rhsim09G0057500' => 'rsi', 'Sabra16G0021500' => 'sbr', 'Sabra16G0021600' => 'sbr', 'Sabra16G0026200' => 'sbr', 'Sabra16G0026300' => 'sbr', 'TAR168G0002' => 'tar', 'TAR371G0597' => 'tar', 'TAR625G1076' => 'tar', 'TAR626G1200' => 'tar', 'Thecc.10G162400' => 'tca', 'vmacro08618' => 'vma', 'vmacro15541' => 'vma', 'vmacro15542' => 'vma', 'vmacro15543' => 'vma', 'vmacro15545' => 'vma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002273' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002273' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002273' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002273' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002273', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '296', 'num_species' => '33' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'Actinidia02878' => 'ach', 'Actinidia12852' => 'ach', 'Actinidia27496' => 'ach', 'Actinidia35859' => 'ach', 'Actinidia35860' => 'ach', 'Aqoxy1G02125' => 'aox', 'Aqoxy1G02128' => 'aox', 'Aqoxy1G03845' => 'aox', 'Aqoxy1G04001' => 'aox', 'Aqoxy2G03725' => 'aox', 'Aqoxy2G03726' => 'aox', 'Aqoxy3G00237' => 'aox', 'Aqoxy4G00735' => 'aox', 'Aqoxy4G03043' => 'aox', 'Aqoxy4G03044' => 'aox', 'Aqoxy4G03045' => 'aox', 'Aqoxy4G03046' => 'aox', 'Aqoxy5G01441' => 'aox', 'Aqoxy5G01442' => 'aox', 'Aqoxy6G00736' => 'aox', 'Aqoxy6G01809' => 'aox', 'Aqoxy6G01812' => 'aox', 'Aqoxy6G01816' => 'aox', 'Aqoxy6G01827' => 'aox', 'ATR0733G186' => 'atr', 'Cc10_g05480' => 'ccan', 'Ciclev10007080m.g' => 'ccl', 'Ciclev10007089m.g' => 'ccl', 'CiPaw.15G046800' => 'cil', 'COL.COLO4_06463' => 'col', 'CSS0000286' => 'camsi', 'CSS0003272' => 'camsi', 'CSS0027661' => 'camsi', 'CSS0048802' => 'camsi', 'CSS0050412' => 'camsi', 'DCAR_013123' => 'dca', 'DCAR_013124' => 'dca', 'DCAR_014540' => 'dca', 'DCAR_027683' => 'dca', 'DCAR_027684' => 'dca', 'Dinv10227' => 'din', 'Dinv12946' => 'din', 'Dinv21990' => 'din', 'Dinv25029' => 'din', 'Dinv27227' => 'din', 'Dinv27228' => 'din', 'Dinv30109' => 'din', 'Duzib114G0913' => 'dzi', 'FAN01G0572' => 'fan', 'FAN02G0546' => 'fan', 'FAN02G0662' => 'fan', 'FAN02G1145' => 'fan', 'FAN02G1455' => 'fan', 'FAN02G1515' => 'fan', 'FAN02G2233' => 'fan', 'FAN02G4400' => 'fan', 'FAN03G0826' => 'fan', 'FAN03G1125' => 'fan', 'FAN03G1740' => 'fan', 'FAN04G1634' => 'fan', 'FAN05G0170' => 'fan', 'FAN05G0328' => 'fan', 'FAN05G1262' => 'fan', 'FAN05G2629' => 'fan', 'FAN05G4822' => 'fan', 'FAN06G2377' => 'fan', 'FAN06G4436' => 'fan', 'FAN07G0263' => 'fan', 'FAN07G0910' => 'fan', 'FAN07G1205' => 'fan', 'FAN07G1398' => 'fan', 'FAN07G2815' => 'fan', 'FAN08G1469' => 'fan', 'FAN09G0900' => 'fan', 'FAN09G3910' => 'fan', 'FAN10G1670' => 'fan', 'FAN10G2973' => 'fan', 'FAN10G3567' => 'fan', 'FAN11G0922' => 'fan', 'FAN11G1057' => 'fan', 'FAN11G1149' => 'fan', 'FAN11G1256' => 'fan', 'FAN11G1309' => 'fan', 'FAN11G3011' => 'fan', 'FAN11G3345' => 'fan', 'FAN11G3570' => 'fan', 'FAN11G3950' => 'fan', 'FAN12G1031' => 'fan', 'FAN12G3884' => 'fan', 'FAN13G0296' => 'fan', 'FAN14G0680' => 'fan', 'FAN14G1144' => 'fan', 'FAN14G2176' => 'fan', 'FAN14G3798' => 'fan', 'FAN15G0207' => 'fan', 'FAN15G1613' => 'fan', 'FAN15G1965' => 'fan', 'FAN15G2793' => 'fan', 'FAN16G0184' => 'fan', 'FAN16G1476' => 'fan', 'FAN16G3165' => 'fan', 'FAN16G3222' => 'fan', 'FAN16G3530' => 'fan', 'FAN17G0544' => 'fan', 'FAN18G0741' => 'fan', 'FAN21G0324' => 'fan', 'FAN21G0335' => 'fan', 'FAN21G1445' => 'fan', 'FAN21G1655' => 'fan', 'FAN21G2209' => 'fan', 'FAN21G2498' => 'fan', 'FAN21G3370' => 'fan', 'FAN22G0528' => 'fan', 'FAN22G1558' => 'fan', 'FAN22G1927' => 'fan', 'FAN22G1946' => 'fan', 'FAN23G0636' => 'fan', 'FAN23G2472' => 'fan', 'FAN23G2564' => 'fan', 'FAN25G0350' => 'fan', 'FAN25G1038' => 'fan', 'FAN25G1613' => 'fan', 'FAN25G2869' => 'fan', 'FAN25G3026' => 'fan', 'FAN25G3717' => 'fan', 'FAN25G3871' => 'fan', 'FAN26G2395' => 'fan', 'FAN26G3059' => 'fan', 'FAN27G2306' => 'fan', 'FAN28G1576' => 'fan', 'FvH4_3g05260' => 'fve', 'FvH4_3g05270' => 'fve', 'FvH4_3g06260' => 'fve', 'FvH4_3g09690' => 'fve', 'FvH4_3g12570' => 'fve', 'FvH4_3g33270' => 'fve', 'FvH4_3g33350' => 'fve', 'FvH4_3g38380' => 'fve', 'FvH4_3g39340' => 'fve', 'FvH4_4g13771' => 'fve', 'FvH4_4g13850' => 'fve', 'FvH4_4g13861' => 'fve', 'FvH4_4g13862' => 'fve', 'FvH4_4g13890' => 'fve', 'FvH4_4g13901' => 'fve', 'FvH4_5g24920' => 'fve', 'FvH4_5g30520' => 'fve', 'FvH4_6g07600' => 'fve', 'FvH4_6g07650' => 'fve', 'FvH4_6g09400' => 'fve', 'FvH4_6g09680' => 'fve', 'FvH4_6g09681' => 'fve', 'FvH4_6g09690' => 'fve', 'FvH4_6g20761' => 'fve', 'FvH4_6g20955' => 'fve', 'FvH4_6g47541' => 'fve', 'FvH4_7g19271' => 'fve', 'FvH4_7g19272' => 'fve', 'FvH4_7g19290' => 'fve', 'GSVIVG01005600001' => 'vvi', 'GSVIVG01006146001' => 'vvi', 'GSVIVG01022445001' => 'vvi', 'GSVIVG01022447001' => 'vvi', 'GSVIVG01022448001' => 'vvi', 'GSVIVG01022452001' => 'vvi', 'GSVIVG01022453001' => 'vvi', 'GSVIVG01031558001' => 'vvi', 'GSVIVG01037123001' => 'vvi', 'GSVIVG01037127001' => 'vvi', 'GSVIVG01037129001' => 'vvi', 'GSVIVG01037130001' => 'vvi', 'HanXRQChr07g0185521' => 'han', 'Hma1.2p1_0383F.1_g140320' => 'hma', 'Hma1.2p1_0383F.1_g140340' => 'hma', 'Hma1.2p1_0383F.1_g140410' => 'hma', 'Hma1.2p1_0383F.1_g140440' => 'hma', 'Hma1.2p1_1223F.1_g268330' => 'hma', 'Hma1.2p1_2122F.1_g314510' => 'hma', 'HPP92_012197' => 'vpl', 'HPP92_012335' => 'vpl', 'HPP92_013914' => 'vpl', 'HPP92_013915' => 'vpl', 'HPP92_013985' => 'vpl', 'HPP92_013986' => 'vpl', 'HPP92_015686' => 'vpl', 'HPP92_015687' => 'vpl', 'HPP92_018671' => 'vpl', 'HPP92_018672' => 'vpl', 'HPP92_018673' => 'vpl', 'HPP92_018689' => 'vpl', 'HPP92_018690' => 'vpl', 'HPP92_018691' => 'vpl', 'HPP92_019492' => 'vpl', 'Lj3P407T43' => 'lonja', 'Lj6A535G33' => 'lonja', 'Lj6A536G23' => 'lonja', 'Lj6A538G37' => 'lonja', 'Lj6A538T41' => 'lonja', 'Lj6A538T42' => 'lonja', 'Lj6A539T24' => 'lonja', 'Lj6A539T25' => 'lonja', 'Lj6A540T15' => 'lonja', 'Lj6A542G10' => 'lonja', 'Lj6C536G5' => 'lonja', 'Lj6C540T3' => 'lonja', 'Lj6C540T4' => 'lonja', 'Lj6C541G0' => 'lonja', 'Lj6C542G4' => 'lonja', 'Lj6C542T3' => 'lonja', 'Lj6C545G2' => 'lonja', 'Lj6C545G3' => 'lonja', 'Lj6E539T1' => 'lonja', 'Lj6E539T2' => 'lonja', 'Lj6P537T6' => 'lonja', 'Lj6P541T5' => 'lonja', 'Lsat_1_v5_gn_6_60060' => 'lsa', 'Lsat_1_v5_gn_6_61000' => 'lsa', 'Lsat_1_v5_gn_6_61060' => 'lsa', 'Manes.13G095200' => 'mes', 'MBI02_g25002_MAGBIO' => 'mbi', 'MBI02_g37275_MAGBIO' => 'mbi', 'MBI18_g28202_MAGBIO' => 'mbi', 'MBI18_g28203_MAGBIO' => 'mbi', 'MD04G1010000' => 'mdo', 'MD07G1173200' => 'mdo', 'Nn1g04477' => 'nnu', 'Nn1g04478' => 'nnu', 'Nn1g06062' => 'nnu', 'Nn1g06063' => 'nnu', 'Nn7g37455' => 'nnu', 'Nn8g40653' => 'nnu', 'Nn8g40654' => 'nnu', 'Os03g0638900' => 'osa', 'Os12g0609900' => 'osa', 'Potri.016G019500' => 'ptr', 'Prupe.1G009600' => 'ppe', 'Prupe.1G010100' => 'ppe', 'Prupe.1G010600' => 'ppe', 'Prupe.1G012400' => 'ppe', 'Prupe.1G012600' => 'ppe', 'Prupe.1G012700' => 'ppe', 'Prupe.1G157200' => 'ppe', 'Prupe.1G157300' => 'ppe', 'Prupe.1G157400' => 'ppe', 'Prupe.1G157500' => 'ppe', 'Prupe.1G157600' => 'ppe', 'Prupe.1G157700' => 'ppe', 'Prupe.1G157900' => 'ppe', 'Prupe.1G158000' => 'ppe', 'Prupe.1G158100' => 'ppe', 'Prupe.1G158200' => 'ppe', 'Prupe.2G138900' => 'ppe', 'Prupe.2G212400' => 'ppe', 'Prupe.5G001500' => 'ppe', 'Prupe.6G053000' => 'ppe', 'QL01p032835' => 'qlo', 'QL02p002659' => 'qlo', 'QL08p005039' => 'qlo', 'QL08p005864' => 'qlo', 'QL08p007653' => 'qlo', 'RcHm_v2.0_Chr1g0363121' => 'rch', 'RcHm_v2.0_Chr1g0363131' => 'rch', 'RcHm_v2.0_Chr1g0363141' => 'rch', 'RcHm_v2.0_Chr1g0363161' => 'rch', 'RcHm_v2.0_Chr3g0459831' => 'rch', 'RcHm_v2.0_Chr3g0460331' => 'rch', 'RcHm_v2.0_Chr3g0476661' => 'rch', 'RcHm_v2.0_Chr4g0385781' => 'rch', 'RcHm_v2.0_Chr4g0385921' => 'rch', 'RcHm_v2.0_Chr4g0414621' => 'rch', 'RcHm_v2.0_Chr4g0414631' => 'rch', 'RcHm_v2.0_Chr4g0414641' => 'rch', 'RcHm_v2.0_Chr4g0414691' => 'rch', 'RcHm_v2.0_Chr4g0415011' => 'rch', 'RcHm_v2.0_Chr4g0415031' => 'rch', 'RcHm_v2.0_Chr5g0013061' => 'rch', 'RcHm_v2.0_Chr5g0014451' => 'rch', 'RcHm_v2.0_Chr6g0265521' => 'rch', 'RcHm_v2.0_Chr6g0265531' => 'rch', 'RcHm_v2.0_Chr6g0308401' => 'rch', 'RcHm_v2.0_Chr7g0215881' => 'rch', 'Rhsim09G0057500' => 'rsi', 'Sabra16G0021500' => 'sbr', 'Sabra16G0021600' => 'sbr', 'Sabra16G0026200' => 'sbr', 'Sabra16G0026300' => 'sbr', 'TAR168G0002' => 'tar', 'TAR371G0597' => 'tar', 'TAR625G1076' => 'tar', 'TAR626G1200' => 'tar', 'Thecc.10G162400' => 'tca', 'vmacro08618' => 'vma', 'vmacro15541' => 'vma', 'vmacro15542' => 'vma', 'vmacro15543' => 'vma', 'vmacro15545' => 'vma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002273', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002273' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002273', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '296', 'num_species' => '33' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002273' ) ), 'genes' => array( 'Actinidia02878' => 'ach', 'Actinidia12852' => 'ach', 'Actinidia27496' => 'ach', 'Actinidia35859' => 'ach', 'Actinidia35860' => 'ach', 'Aqoxy1G02125' => 'aox', 'Aqoxy1G02128' => 'aox', 'Aqoxy1G03845' => 'aox', 'Aqoxy1G04001' => 'aox', 'Aqoxy2G03725' => 'aox', 'Aqoxy2G03726' => 'aox', 'Aqoxy3G00237' => 'aox', 'Aqoxy4G00735' => 'aox', 'Aqoxy4G03043' => 'aox', 'Aqoxy4G03044' => 'aox', 'Aqoxy4G03045' => 'aox', 'Aqoxy4G03046' => 'aox', 'Aqoxy5G01441' => 'aox', 'Aqoxy5G01442' => 'aox', 'Aqoxy6G00736' => 'aox', 'Aqoxy6G01809' => 'aox', 'Aqoxy6G01812' => 'aox', 'Aqoxy6G01816' => 'aox', 'Aqoxy6G01827' => 'aox', 'ATR0733G186' => 'atr', 'Cc10_g05480' => 'ccan', 'Ciclev10007080m.g' => 'ccl', 'Ciclev10007089m.g' => 'ccl', 'CiPaw.15G046800' => 'cil', 'COL.COLO4_06463' => 'col', 'CSS0000286' => 'camsi', 'CSS0003272' => 'camsi', 'CSS0027661' => 'camsi', 'CSS0048802' => 'camsi', 'CSS0050412' => 'camsi', 'DCAR_013123' => 'dca', 'DCAR_013124' => 'dca', 'DCAR_014540' => 'dca', 'DCAR_027683' => 'dca', 'DCAR_027684' => 'dca', 'Dinv10227' => 'din', 'Dinv12946' => 'din', 'Dinv21990' => 'din', 'Dinv25029' => 'din', 'Dinv27227' => 'din', 'Dinv27228' => 'din', 'Dinv30109' => 'din', 'Duzib114G0913' => 'dzi', 'FAN01G0572' => 'fan', 'FAN02G0546' => 'fan', 'FAN02G0662' => 'fan', 'FAN02G1145' => 'fan', 'FAN02G1455' => 'fan', 'FAN02G1515' => 'fan', 'FAN02G2233' => 'fan', 'FAN02G4400' => 'fan', 'FAN03G0826' => 'fan', 'FAN03G1125' => 'fan', 'FAN03G1740' => 'fan', 'FAN04G1634' => 'fan', 'FAN05G0170' => 'fan', 'FAN05G0328' => 'fan', 'FAN05G1262' => 'fan', 'FAN05G2629' => 'fan', 'FAN05G4822' => 'fan', 'FAN06G2377' => 'fan', 'FAN06G4436' => 'fan', 'FAN07G0263' => 'fan', 'FAN07G0910' => 'fan', 'FAN07G1205' => 'fan', 'FAN07G1398' => 'fan', 'FAN07G2815' => 'fan', 'FAN08G1469' => 'fan', 'FAN09G0900' => 'fan', 'FAN09G3910' => 'fan', 'FAN10G1670' => 'fan', 'FAN10G2973' => 'fan', 'FAN10G3567' => 'fan', 'FAN11G0922' => 'fan', 'FAN11G1057' => 'fan', 'FAN11G1149' => 'fan', 'FAN11G1256' => 'fan', 'FAN11G1309' => 'fan', 'FAN11G3011' => 'fan', 'FAN11G3345' => 'fan', 'FAN11G3570' => 'fan', 'FAN11G3950' => 'fan', 'FAN12G1031' => 'fan', 'FAN12G3884' => 'fan', 'FAN13G0296' => 'fan', 'FAN14G0680' => 'fan', 'FAN14G1144' => 'fan', 'FAN14G2176' => 'fan', 'FAN14G3798' => 'fan', 'FAN15G0207' => 'fan', 'FAN15G1613' => 'fan', 'FAN15G1965' => 'fan', 'FAN15G2793' => 'fan', 'FAN16G0184' => 'fan', 'FAN16G1476' => 'fan', 'FAN16G3165' => 'fan', 'FAN16G3222' => 'fan', 'FAN16G3530' => 'fan', 'FAN17G0544' => 'fan', 'FAN18G0741' => 'fan', 'FAN21G0324' => 'fan', 'FAN21G0335' => 'fan', 'FAN21G1445' => 'fan', 'FAN21G1655' => 'fan', 'FAN21G2209' => 'fan', 'FAN21G2498' => 'fan', 'FAN21G3370' => 'fan', 'FAN22G0528' => 'fan', 'FAN22G1558' => 'fan', 'FAN22G1927' => 'fan', 'FAN22G1946' => 'fan', 'FAN23G0636' => 'fan', 'FAN23G2472' => 'fan', 'FAN23G2564' => 'fan', 'FAN25G0350' => 'fan', 'FAN25G1038' => 'fan', 'FAN25G1613' => 'fan', 'FAN25G2869' => 'fan', 'FAN25G3026' => 'fan', 'FAN25G3717' => 'fan', 'FAN25G3871' => 'fan', 'FAN26G2395' => 'fan', 'FAN26G3059' => 'fan', 'FAN27G2306' => 'fan', 'FAN28G1576' => 'fan', 'FvH4_3g05260' => 'fve', 'FvH4_3g05270' => 'fve', 'FvH4_3g06260' => 'fve', 'FvH4_3g09690' => 'fve', 'FvH4_3g12570' => 'fve', 'FvH4_3g33270' => 'fve', 'FvH4_3g33350' => 'fve', 'FvH4_3g38380' => 'fve', 'FvH4_3g39340' => 'fve', 'FvH4_4g13771' => 'fve', 'FvH4_4g13850' => 'fve', 'FvH4_4g13861' => 'fve', 'FvH4_4g13862' => 'fve', 'FvH4_4g13890' => 'fve', 'FvH4_4g13901' => 'fve', 'FvH4_5g24920' => 'fve', 'FvH4_5g30520' => 'fve', 'FvH4_6g07600' => 'fve', 'FvH4_6g07650' => 'fve', 'FvH4_6g09400' => 'fve', 'FvH4_6g09680' => 'fve', 'FvH4_6g09681' => 'fve', 'FvH4_6g09690' => 'fve', 'FvH4_6g20761' => 'fve', 'FvH4_6g20955' => 'fve', 'FvH4_6g47541' => 'fve', 'FvH4_7g19271' => 'fve', 'FvH4_7g19272' => 'fve', 'FvH4_7g19290' => 'fve', 'GSVIVG01005600001' => 'vvi', 'GSVIVG01006146001' => 'vvi', 'GSVIVG01022445001' => 'vvi', 'GSVIVG01022447001' => 'vvi', 'GSVIVG01022448001' => 'vvi', 'GSVIVG01022452001' => 'vvi', 'GSVIVG01022453001' => 'vvi', 'GSVIVG01031558001' => 'vvi', 'GSVIVG01037123001' => 'vvi', 'GSVIVG01037127001' => 'vvi', 'GSVIVG01037129001' => 'vvi', 'GSVIVG01037130001' => 'vvi', 'HanXRQChr07g0185521' => 'han', 'Hma1.2p1_0383F.1_g140320' => 'hma', 'Hma1.2p1_0383F.1_g140340' => 'hma', 'Hma1.2p1_0383F.1_g140410' => 'hma', 'Hma1.2p1_0383F.1_g140440' => 'hma', 'Hma1.2p1_1223F.1_g268330' => 'hma', 'Hma1.2p1_2122F.1_g314510' => 'hma', 'HPP92_012197' => 'vpl', 'HPP92_012335' => 'vpl', 'HPP92_013914' => 'vpl', 'HPP92_013915' => 'vpl', 'HPP92_013985' => 'vpl', 'HPP92_013986' => 'vpl', 'HPP92_015686' => 'vpl', 'HPP92_015687' => 'vpl', 'HPP92_018671' => 'vpl', 'HPP92_018672' => 'vpl', 'HPP92_018673' => 'vpl', 'HPP92_018689' => 'vpl', 'HPP92_018690' => 'vpl', 'HPP92_018691' => 'vpl', 'HPP92_019492' => 'vpl', 'Lj3P407T43' => 'lonja', 'Lj6A535G33' => 'lonja', 'Lj6A536G23' => 'lonja', 'Lj6A538G37' => 'lonja', 'Lj6A538T41' => 'lonja', 'Lj6A538T42' => 'lonja', 'Lj6A539T24' => 'lonja', 'Lj6A539T25' => 'lonja', 'Lj6A540T15' => 'lonja', 'Lj6A542G10' => 'lonja', 'Lj6C536G5' => 'lonja', 'Lj6C540T3' => 'lonja', 'Lj6C540T4' => 'lonja', 'Lj6C541G0' => 'lonja', 'Lj6C542G4' => 'lonja', 'Lj6C542T3' => 'lonja', 'Lj6C545G2' => 'lonja', 'Lj6C545G3' => 'lonja', 'Lj6E539T1' => 'lonja', 'Lj6E539T2' => 'lonja', 'Lj6P537T6' => 'lonja', 'Lj6P541T5' => 'lonja', 'Lsat_1_v5_gn_6_60060' => 'lsa', 'Lsat_1_v5_gn_6_61000' => 'lsa', 'Lsat_1_v5_gn_6_61060' => 'lsa', 'Manes.13G095200' => 'mes', 'MBI02_g25002_MAGBIO' => 'mbi', 'MBI02_g37275_MAGBIO' => 'mbi', 'MBI18_g28202_MAGBIO' => 'mbi', 'MBI18_g28203_MAGBIO' => 'mbi', 'MD04G1010000' => 'mdo', 'MD07G1173200' => 'mdo', 'Nn1g04477' => 'nnu', 'Nn1g04478' => 'nnu', 'Nn1g06062' => 'nnu', 'Nn1g06063' => 'nnu', 'Nn7g37455' => 'nnu', 'Nn8g40653' => 'nnu', 'Nn8g40654' => 'nnu', 'Os03g0638900' => 'osa', 'Os12g0609900' => 'osa', 'Potri.016G019500' => 'ptr', 'Prupe.1G009600' => 'ppe', 'Prupe.1G010100' => 'ppe', 'Prupe.1G010600' => 'ppe', 'Prupe.1G012400' => 'ppe', 'Prupe.1G012600' => 'ppe', 'Prupe.1G012700' => 'ppe', 'Prupe.1G157200' => 'ppe', 'Prupe.1G157300' => 'ppe', 'Prupe.1G157400' => 'ppe', 'Prupe.1G157500' => 'ppe', 'Prupe.1G157600' => 'ppe', 'Prupe.1G157700' => 'ppe', 'Prupe.1G157900' => 'ppe', 'Prupe.1G158000' => 'ppe', 'Prupe.1G158100' => 'ppe', 'Prupe.1G158200' => 'ppe', 'Prupe.2G138900' => 'ppe', 'Prupe.2G212400' => 'ppe', 'Prupe.5G001500' => 'ppe', 'Prupe.6G053000' => 'ppe', 'QL01p032835' => 'qlo', 'QL02p002659' => 'qlo', 'QL08p005039' => 'qlo', 'QL08p005864' => 'qlo', 'QL08p007653' => 'qlo', 'RcHm_v2.0_Chr1g0363121' => 'rch', 'RcHm_v2.0_Chr1g0363131' => 'rch', 'RcHm_v2.0_Chr1g0363141' => 'rch', 'RcHm_v2.0_Chr1g0363161' => 'rch', 'RcHm_v2.0_Chr3g0459831' => 'rch', 'RcHm_v2.0_Chr3g0460331' => 'rch', 'RcHm_v2.0_Chr3g0476661' => 'rch', 'RcHm_v2.0_Chr4g0385781' => 'rch', 'RcHm_v2.0_Chr4g0385921' => 'rch', 'RcHm_v2.0_Chr4g0414621' => 'rch', 'RcHm_v2.0_Chr4g0414631' => 'rch', 'RcHm_v2.0_Chr4g0414641' => 'rch', 'RcHm_v2.0_Chr4g0414691' => 'rch', 'RcHm_v2.0_Chr4g0415011' => 'rch', 'RcHm_v2.0_Chr4g0415031' => 'rch', 'RcHm_v2.0_Chr5g0013061' => 'rch', 'RcHm_v2.0_Chr5g0014451' => 'rch', 'RcHm_v2.0_Chr6g0265521' => 'rch', 'RcHm_v2.0_Chr6g0265531' => 'rch', 'RcHm_v2.0_Chr6g0308401' => 'rch', 'RcHm_v2.0_Chr7g0215881' => 'rch', 'Rhsim09G0057500' => 'rsi', 'Sabra16G0021500' => 'sbr', 'Sabra16G0021600' => 'sbr', 'Sabra16G0026200' => 'sbr', 'Sabra16G0026300' => 'sbr', 'TAR168G0002' => 'tar', 'TAR371G0597' => 'tar', 'TAR625G1076' => 'tar', 'TAR626G1200' => 'tar', 'Thecc.10G162400' => 'tca', 'vmacro08618' => 'vma', 'vmacro15541' => 'vma', 'vmacro15542' => 'vma', 'vmacro15543' => 'vma', 'vmacro15545' => 'vma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002273' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002273' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002273' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002273' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002273', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '296', 'num_species' => '33' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'Actinidia02878' => 'ach', 'Actinidia12852' => 'ach', 'Actinidia27496' => 'ach', 'Actinidia35859' => 'ach', 'Actinidia35860' => 'ach', 'Aqoxy1G02125' => 'aox', 'Aqoxy1G02128' => 'aox', 'Aqoxy1G03845' => 'aox', 'Aqoxy1G04001' => 'aox', 'Aqoxy2G03725' => 'aox', 'Aqoxy2G03726' => 'aox', 'Aqoxy3G00237' => 'aox', 'Aqoxy4G00735' => 'aox', 'Aqoxy4G03043' => 'aox', 'Aqoxy4G03044' => 'aox', 'Aqoxy4G03045' => 'aox', 'Aqoxy4G03046' => 'aox', 'Aqoxy5G01441' => 'aox', 'Aqoxy5G01442' => 'aox', 'Aqoxy6G00736' => 'aox', 'Aqoxy6G01809' => 'aox', 'Aqoxy6G01812' => 'aox', 'Aqoxy6G01816' => 'aox', 'Aqoxy6G01827' => 'aox', 'ATR0733G186' => 'atr', 'Cc10_g05480' => 'ccan', 'Ciclev10007080m.g' => 'ccl', 'Ciclev10007089m.g' => 'ccl', 'CiPaw.15G046800' => 'cil', 'COL.COLO4_06463' => 'col', 'CSS0000286' => 'camsi', 'CSS0003272' => 'camsi', 'CSS0027661' => 'camsi', 'CSS0048802' => 'camsi', 'CSS0050412' => 'camsi', 'DCAR_013123' => 'dca', 'DCAR_013124' => 'dca', 'DCAR_014540' => 'dca', 'DCAR_027683' => 'dca', 'DCAR_027684' => 'dca', 'Dinv10227' => 'din', 'Dinv12946' => 'din', 'Dinv21990' => 'din', 'Dinv25029' => 'din', 'Dinv27227' => 'din', 'Dinv27228' => 'din', 'Dinv30109' => 'din', 'Duzib114G0913' => 'dzi', 'FAN01G0572' => 'fan', 'FAN02G0546' => 'fan', 'FAN02G0662' => 'fan', 'FAN02G1145' => 'fan', 'FAN02G1455' => 'fan', 'FAN02G1515' => 'fan', 'FAN02G2233' => 'fan', 'FAN02G4400' => 'fan', 'FAN03G0826' => 'fan', 'FAN03G1125' => 'fan', 'FAN03G1740' => 'fan', 'FAN04G1634' => 'fan', 'FAN05G0170' => 'fan', 'FAN05G0328' => 'fan', 'FAN05G1262' => 'fan', 'FAN05G2629' => 'fan', 'FAN05G4822' => 'fan', 'FAN06G2377' => 'fan', 'FAN06G4436' => 'fan', 'FAN07G0263' => 'fan', 'FAN07G0910' => 'fan', 'FAN07G1205' => 'fan', 'FAN07G1398' => 'fan', 'FAN07G2815' => 'fan', 'FAN08G1469' => 'fan', 'FAN09G0900' => 'fan', 'FAN09G3910' => 'fan', 'FAN10G1670' => 'fan', 'FAN10G2973' => 'fan', 'FAN10G3567' => 'fan', 'FAN11G0922' => 'fan', 'FAN11G1057' => 'fan', 'FAN11G1149' => 'fan', 'FAN11G1256' => 'fan', 'FAN11G1309' => 'fan', 'FAN11G3011' => 'fan', 'FAN11G3345' => 'fan', 'FAN11G3570' => 'fan', 'FAN11G3950' => 'fan', 'FAN12G1031' => 'fan', 'FAN12G3884' => 'fan', 'FAN13G0296' => 'fan', 'FAN14G0680' => 'fan', 'FAN14G1144' => 'fan', 'FAN14G2176' => 'fan', 'FAN14G3798' => 'fan', 'FAN15G0207' => 'fan', 'FAN15G1613' => 'fan', 'FAN15G1965' => 'fan', 'FAN15G2793' => 'fan', 'FAN16G0184' => 'fan', 'FAN16G1476' => 'fan', 'FAN16G3165' => 'fan', 'FAN16G3222' => 'fan', 'FAN16G3530' => 'fan', 'FAN17G0544' => 'fan', 'FAN18G0741' => 'fan', 'FAN21G0324' => 'fan', 'FAN21G0335' => 'fan', 'FAN21G1445' => 'fan', 'FAN21G1655' => 'fan', 'FAN21G2209' => 'fan', 'FAN21G2498' => 'fan', 'FAN21G3370' => 'fan', 'FAN22G0528' => 'fan', 'FAN22G1558' => 'fan', 'FAN22G1927' => 'fan', 'FAN22G1946' => 'fan', 'FAN23G0636' => 'fan', 'FAN23G2472' => 'fan', 'FAN23G2564' => 'fan', 'FAN25G0350' => 'fan', 'FAN25G1038' => 'fan', 'FAN25G1613' => 'fan', 'FAN25G2869' => 'fan', 'FAN25G3026' => 'fan', 'FAN25G3717' => 'fan', 'FAN25G3871' => 'fan', 'FAN26G2395' => 'fan', 'FAN26G3059' => 'fan', 'FAN27G2306' => 'fan', 'FAN28G1576' => 'fan', 'FvH4_3g05260' => 'fve', 'FvH4_3g05270' => 'fve', 'FvH4_3g06260' => 'fve', 'FvH4_3g09690' => 'fve', 'FvH4_3g12570' => 'fve', 'FvH4_3g33270' => 'fve', 'FvH4_3g33350' => 'fve', 'FvH4_3g38380' => 'fve', 'FvH4_3g39340' => 'fve', 'FvH4_4g13771' => 'fve', 'FvH4_4g13850' => 'fve', 'FvH4_4g13861' => 'fve', 'FvH4_4g13862' => 'fve', 'FvH4_4g13890' => 'fve', 'FvH4_4g13901' => 'fve', 'FvH4_5g24920' => 'fve', 'FvH4_5g30520' => 'fve', 'FvH4_6g07600' => 'fve', 'FvH4_6g07650' => 'fve', 'FvH4_6g09400' => 'fve', 'FvH4_6g09680' => 'fve', 'FvH4_6g09681' => 'fve', 'FvH4_6g09690' => 'fve', 'FvH4_6g20761' => 'fve', 'FvH4_6g20955' => 'fve', 'FvH4_6g47541' => 'fve', 'FvH4_7g19271' => 'fve', 'FvH4_7g19272' => 'fve', 'FvH4_7g19290' => 'fve', 'GSVIVG01005600001' => 'vvi', 'GSVIVG01006146001' => 'vvi', 'GSVIVG01022445001' => 'vvi', 'GSVIVG01022447001' => 'vvi', 'GSVIVG01022448001' => 'vvi', 'GSVIVG01022452001' => 'vvi', 'GSVIVG01022453001' => 'vvi', 'GSVIVG01031558001' => 'vvi', 'GSVIVG01037123001' => 'vvi', 'GSVIVG01037127001' => 'vvi', 'GSVIVG01037129001' => 'vvi', 'GSVIVG01037130001' => 'vvi', 'HanXRQChr07g0185521' => 'han', 'Hma1.2p1_0383F.1_g140320' => 'hma', 'Hma1.2p1_0383F.1_g140340' => 'hma', 'Hma1.2p1_0383F.1_g140410' => 'hma', 'Hma1.2p1_0383F.1_g140440' => 'hma', 'Hma1.2p1_1223F.1_g268330' => 'hma', 'Hma1.2p1_2122F.1_g314510' => 'hma', 'HPP92_012197' => 'vpl', 'HPP92_012335' => 'vpl', 'HPP92_013914' => 'vpl', 'HPP92_013915' => 'vpl', 'HPP92_013985' => 'vpl', 'HPP92_013986' => 'vpl', 'HPP92_015686' => 'vpl', 'HPP92_015687' => 'vpl', 'HPP92_018671' => 'vpl', 'HPP92_018672' => 'vpl', 'HPP92_018673' => 'vpl', 'HPP92_018689' => 'vpl', 'HPP92_018690' => 'vpl', 'HPP92_018691' => 'vpl', 'HPP92_019492' => 'vpl', 'Lj3P407T43' => 'lonja', 'Lj6A535G33' => 'lonja', 'Lj6A536G23' => 'lonja', 'Lj6A538G37' => 'lonja', 'Lj6A538T41' => 'lonja', 'Lj6A538T42' => 'lonja', 'Lj6A539T24' => 'lonja', 'Lj6A539T25' => 'lonja', 'Lj6A540T15' => 'lonja', 'Lj6A542G10' => 'lonja', 'Lj6C536G5' => 'lonja', 'Lj6C540T3' => 'lonja', 'Lj6C540T4' => 'lonja', 'Lj6C541G0' => 'lonja', 'Lj6C542G4' => 'lonja', 'Lj6C542T3' => 'lonja', 'Lj6C545G2' => 'lonja', 'Lj6C545G3' => 'lonja', 'Lj6E539T1' => 'lonja', 'Lj6E539T2' => 'lonja', 'Lj6P537T6' => 'lonja', 'Lj6P541T5' => 'lonja', 'Lsat_1_v5_gn_6_60060' => 'lsa', 'Lsat_1_v5_gn_6_61000' => 'lsa', 'Lsat_1_v5_gn_6_61060' => 'lsa', 'Manes.13G095200' => 'mes', 'MBI02_g25002_MAGBIO' => 'mbi', 'MBI02_g37275_MAGBIO' => 'mbi', 'MBI18_g28202_MAGBIO' => 'mbi', 'MBI18_g28203_MAGBIO' => 'mbi', 'MD04G1010000' => 'mdo', 'MD07G1173200' => 'mdo', 'Nn1g04477' => 'nnu', 'Nn1g04478' => 'nnu', 'Nn1g06062' => 'nnu', 'Nn1g06063' => 'nnu', 'Nn7g37455' => 'nnu', 'Nn8g40653' => 'nnu', 'Nn8g40654' => 'nnu', 'Os03g0638900' => 'osa', 'Os12g0609900' => 'osa', 'Potri.016G019500' => 'ptr', 'Prupe.1G009600' => 'ppe', 'Prupe.1G010100' => 'ppe', 'Prupe.1G010600' => 'ppe', 'Prupe.1G012400' => 'ppe', 'Prupe.1G012600' => 'ppe', 'Prupe.1G012700' => 'ppe', 'Prupe.1G157200' => 'ppe', 'Prupe.1G157300' => 'ppe', 'Prupe.1G157400' => 'ppe', 'Prupe.1G157500' => 'ppe', 'Prupe.1G157600' => 'ppe', 'Prupe.1G157700' => 'ppe', 'Prupe.1G157900' => 'ppe', 'Prupe.1G158000' => 'ppe', 'Prupe.1G158100' => 'ppe', 'Prupe.1G158200' => 'ppe', 'Prupe.2G138900' => 'ppe', 'Prupe.2G212400' => 'ppe', 'Prupe.5G001500' => 'ppe', 'Prupe.6G053000' => 'ppe', 'QL01p032835' => 'qlo', 'QL02p002659' => 'qlo', 'QL08p005039' => 'qlo', 'QL08p005864' => 'qlo', 'QL08p007653' => 'qlo', 'RcHm_v2.0_Chr1g0363121' => 'rch', 'RcHm_v2.0_Chr1g0363131' => 'rch', 'RcHm_v2.0_Chr1g0363141' => 'rch', 'RcHm_v2.0_Chr1g0363161' => 'rch', 'RcHm_v2.0_Chr3g0459831' => 'rch', 'RcHm_v2.0_Chr3g0460331' => 'rch', 'RcHm_v2.0_Chr3g0476661' => 'rch', 'RcHm_v2.0_Chr4g0385781' => 'rch', 'RcHm_v2.0_Chr4g0385921' => 'rch', 'RcHm_v2.0_Chr4g0414621' => 'rch', 'RcHm_v2.0_Chr4g0414631' => 'rch', 'RcHm_v2.0_Chr4g0414641' => 'rch', 'RcHm_v2.0_Chr4g0414691' => 'rch', 'RcHm_v2.0_Chr4g0415011' => 'rch', 'RcHm_v2.0_Chr4g0415031' => 'rch', 'RcHm_v2.0_Chr5g0013061' => 'rch', 'RcHm_v2.0_Chr5g0014451' => 'rch', 'RcHm_v2.0_Chr6g0265521' => 'rch', 'RcHm_v2.0_Chr6g0265531' => 'rch', 'RcHm_v2.0_Chr6g0308401' => 'rch', 'RcHm_v2.0_Chr7g0215881' => 'rch', 'Rhsim09G0057500' => 'rsi', 'Sabra16G0021500' => 'sbr', 'Sabra16G0021600' => 'sbr', 'Sabra16G0026200' => 'sbr', 'Sabra16G0026300' => 'sbr', 'TAR168G0002' => 'tar', 'TAR371G0597' => 'tar', 'TAR625G1076' => 'tar', 'TAR626G1200' => 'tar', 'Thecc.10G162400' => 'tca', 'vmacro08618' => 'vma', 'vmacro15541' => 'vma', 'vmacro15542' => 'vma', 'vmacro15543' => 'vma', 'vmacro15545' => 'vma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002273', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002273' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002273', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '296', 'num_species' => '33' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002273' ) ), 'genes' => array( 'Actinidia02878' => 'ach', 'Actinidia12852' => 'ach', 'Actinidia27496' => 'ach', 'Actinidia35859' => 'ach', 'Actinidia35860' => 'ach', 'Aqoxy1G02125' => 'aox', 'Aqoxy1G02128' => 'aox', 'Aqoxy1G03845' => 'aox', 'Aqoxy1G04001' => 'aox', 'Aqoxy2G03725' => 'aox', 'Aqoxy2G03726' => 'aox', 'Aqoxy3G00237' => 'aox', 'Aqoxy4G00735' => 'aox', 'Aqoxy4G03043' => 'aox', 'Aqoxy4G03044' => 'aox', 'Aqoxy4G03045' => 'aox', 'Aqoxy4G03046' => 'aox', 'Aqoxy5G01441' => 'aox', 'Aqoxy5G01442' => 'aox', 'Aqoxy6G00736' => 'aox', 'Aqoxy6G01809' => 'aox', 'Aqoxy6G01812' => 'aox', 'Aqoxy6G01816' => 'aox', 'Aqoxy6G01827' => 'aox', 'ATR0733G186' => 'atr', 'Cc10_g05480' => 'ccan', 'Ciclev10007080m.g' => 'ccl', 'Ciclev10007089m.g' => 'ccl', 'CiPaw.15G046800' => 'cil', 'COL.COLO4_06463' => 'col', 'CSS0000286' => 'camsi', 'CSS0003272' => 'camsi', 'CSS0027661' => 'camsi', 'CSS0048802' => 'camsi', 'CSS0050412' => 'camsi', 'DCAR_013123' => 'dca', 'DCAR_013124' => 'dca', 'DCAR_014540' => 'dca', 'DCAR_027683' => 'dca', 'DCAR_027684' => 'dca', 'Dinv10227' => 'din', 'Dinv12946' => 'din', 'Dinv21990' => 'din', 'Dinv25029' => 'din', 'Dinv27227' => 'din', 'Dinv27228' => 'din', 'Dinv30109' => 'din', 'Duzib114G0913' => 'dzi', 'FAN01G0572' => 'fan', 'FAN02G0546' => 'fan', 'FAN02G0662' => 'fan', 'FAN02G1145' => 'fan', 'FAN02G1455' => 'fan', 'FAN02G1515' => 'fan', 'FAN02G2233' => 'fan', 'FAN02G4400' => 'fan', 'FAN03G0826' => 'fan', 'FAN03G1125' => 'fan', 'FAN03G1740' => 'fan', 'FAN04G1634' => 'fan', 'FAN05G0170' => 'fan', 'FAN05G0328' => 'fan', 'FAN05G1262' => 'fan', 'FAN05G2629' => 'fan', 'FAN05G4822' => 'fan', 'FAN06G2377' => 'fan', 'FAN06G4436' => 'fan', 'FAN07G0263' => 'fan', 'FAN07G0910' => 'fan', 'FAN07G1205' => 'fan', 'FAN07G1398' => 'fan', 'FAN07G2815' => 'fan', 'FAN08G1469' => 'fan', 'FAN09G0900' => 'fan', 'FAN09G3910' => 'fan', 'FAN10G1670' => 'fan', 'FAN10G2973' => 'fan', 'FAN10G3567' => 'fan', 'FAN11G0922' => 'fan', 'FAN11G1057' => 'fan', 'FAN11G1149' => 'fan', 'FAN11G1256' => 'fan', 'FAN11G1309' => 'fan', 'FAN11G3011' => 'fan', 'FAN11G3345' => 'fan', 'FAN11G3570' => 'fan', 'FAN11G3950' => 'fan', 'FAN12G1031' => 'fan', 'FAN12G3884' => 'fan', 'FAN13G0296' => 'fan', 'FAN14G0680' => 'fan', 'FAN14G1144' => 'fan', 'FAN14G2176' => 'fan', 'FAN14G3798' => 'fan', 'FAN15G0207' => 'fan', 'FAN15G1613' => 'fan', 'FAN15G1965' => 'fan', 'FAN15G2793' => 'fan', 'FAN16G0184' => 'fan', 'FAN16G1476' => 'fan', 'FAN16G3165' => 'fan', 'FAN16G3222' => 'fan', 'FAN16G3530' => 'fan', 'FAN17G0544' => 'fan', 'FAN18G0741' => 'fan', 'FAN21G0324' => 'fan', 'FAN21G0335' => 'fan', 'FAN21G1445' => 'fan', 'FAN21G1655' => 'fan', 'FAN21G2209' => 'fan', 'FAN21G2498' => 'fan', 'FAN21G3370' => 'fan', 'FAN22G0528' => 'fan', 'FAN22G1558' => 'fan', 'FAN22G1927' => 'fan', 'FAN22G1946' => 'fan', 'FAN23G0636' => 'fan', 'FAN23G2472' => 'fan', 'FAN23G2564' => 'fan', 'FAN25G0350' => 'fan', 'FAN25G1038' => 'fan', 'FAN25G1613' => 'fan', 'FAN25G2869' => 'fan', 'FAN25G3026' => 'fan', 'FAN25G3717' => 'fan', 'FAN25G3871' => 'fan', 'FAN26G2395' => 'fan', 'FAN26G3059' => 'fan', 'FAN27G2306' => 'fan', 'FAN28G1576' => 'fan', 'FvH4_3g05260' => 'fve', 'FvH4_3g05270' => 'fve', 'FvH4_3g06260' => 'fve', 'FvH4_3g09690' => 'fve', 'FvH4_3g12570' => 'fve', 'FvH4_3g33270' => 'fve', 'FvH4_3g33350' => 'fve', 'FvH4_3g38380' => 'fve', 'FvH4_3g39340' => 'fve', 'FvH4_4g13771' => 'fve', 'FvH4_4g13850' => 'fve', 'FvH4_4g13861' => 'fve', 'FvH4_4g13862' => 'fve', 'FvH4_4g13890' => 'fve', 'FvH4_4g13901' => 'fve', 'FvH4_5g24920' => 'fve', 'FvH4_5g30520' => 'fve', 'FvH4_6g07600' => 'fve', 'FvH4_6g07650' => 'fve', 'FvH4_6g09400' => 'fve', 'FvH4_6g09680' => 'fve', 'FvH4_6g09681' => 'fve', 'FvH4_6g09690' => 'fve', 'FvH4_6g20761' => 'fve', 'FvH4_6g20955' => 'fve', 'FvH4_6g47541' => 'fve', 'FvH4_7g19271' => 'fve', 'FvH4_7g19272' => 'fve', 'FvH4_7g19290' => 'fve', 'GSVIVG01005600001' => 'vvi', 'GSVIVG01006146001' => 'vvi', 'GSVIVG01022445001' => 'vvi', 'GSVIVG01022447001' => 'vvi', 'GSVIVG01022448001' => 'vvi', 'GSVIVG01022452001' => 'vvi', 'GSVIVG01022453001' => 'vvi', 'GSVIVG01031558001' => 'vvi', 'GSVIVG01037123001' => 'vvi', 'GSVIVG01037127001' => 'vvi', 'GSVIVG01037129001' => 'vvi', 'GSVIVG01037130001' => 'vvi', 'HanXRQChr07g0185521' => 'han', 'Hma1.2p1_0383F.1_g140320' => 'hma', 'Hma1.2p1_0383F.1_g140340' => 'hma', 'Hma1.2p1_0383F.1_g140410' => 'hma', 'Hma1.2p1_0383F.1_g140440' => 'hma', 'Hma1.2p1_1223F.1_g268330' => 'hma', 'Hma1.2p1_2122F.1_g314510' => 'hma', 'HPP92_012197' => 'vpl', 'HPP92_012335' => 'vpl', 'HPP92_013914' => 'vpl', 'HPP92_013915' => 'vpl', 'HPP92_013985' => 'vpl', 'HPP92_013986' => 'vpl', 'HPP92_015686' => 'vpl', 'HPP92_015687' => 'vpl', 'HPP92_018671' => 'vpl', 'HPP92_018672' => 'vpl', 'HPP92_018673' => 'vpl', 'HPP92_018689' => 'vpl', 'HPP92_018690' => 'vpl', 'HPP92_018691' => 'vpl', 'HPP92_019492' => 'vpl', 'Lj3P407T43' => 'lonja', 'Lj6A535G33' => 'lonja', 'Lj6A536G23' => 'lonja', 'Lj6A538G37' => 'lonja', 'Lj6A538T41' => 'lonja', 'Lj6A538T42' => 'lonja', 'Lj6A539T24' => 'lonja', 'Lj6A539T25' => 'lonja', 'Lj6A540T15' => 'lonja', 'Lj6A542G10' => 'lonja', 'Lj6C536G5' => 'lonja', 'Lj6C540T3' => 'lonja', 'Lj6C540T4' => 'lonja', 'Lj6C541G0' => 'lonja', 'Lj6C542G4' => 'lonja', 'Lj6C542T3' => 'lonja', 'Lj6C545G2' => 'lonja', 'Lj6C545G3' => 'lonja', 'Lj6E539T1' => 'lonja', 'Lj6E539T2' => 'lonja', 'Lj6P537T6' => 'lonja', 'Lj6P541T5' => 'lonja', 'Lsat_1_v5_gn_6_60060' => 'lsa', 'Lsat_1_v5_gn_6_61000' => 'lsa', 'Lsat_1_v5_gn_6_61060' => 'lsa', 'Manes.13G095200' => 'mes', 'MBI02_g25002_MAGBIO' => 'mbi', 'MBI02_g37275_MAGBIO' => 'mbi', 'MBI18_g28202_MAGBIO' => 'mbi', 'MBI18_g28203_MAGBIO' => 'mbi', 'MD04G1010000' => 'mdo', 'MD07G1173200' => 'mdo', 'Nn1g04477' => 'nnu', 'Nn1g04478' => 'nnu', 'Nn1g06062' => 'nnu', 'Nn1g06063' => 'nnu', 'Nn7g37455' => 'nnu', 'Nn8g40653' => 'nnu', 'Nn8g40654' => 'nnu', 'Os03g0638900' => 'osa', 'Os12g0609900' => 'osa', 'Potri.016G019500' => 'ptr', 'Prupe.1G009600' => 'ppe', 'Prupe.1G010100' => 'ppe', 'Prupe.1G010600' => 'ppe', 'Prupe.1G012400' => 'ppe', 'Prupe.1G012600' => 'ppe', 'Prupe.1G012700' => 'ppe', 'Prupe.1G157200' => 'ppe', 'Prupe.1G157300' => 'ppe', 'Prupe.1G157400' => 'ppe', 'Prupe.1G157500' => 'ppe', 'Prupe.1G157600' => 'ppe', 'Prupe.1G157700' => 'ppe', 'Prupe.1G157900' => 'ppe', 'Prupe.1G158000' => 'ppe', 'Prupe.1G158100' => 'ppe', 'Prupe.1G158200' => 'ppe', 'Prupe.2G138900' => 'ppe', 'Prupe.2G212400' => 'ppe', 'Prupe.5G001500' => 'ppe', 'Prupe.6G053000' => 'ppe', 'QL01p032835' => 'qlo', 'QL02p002659' => 'qlo', 'QL08p005039' => 'qlo', 'QL08p005864' => 'qlo', 'QL08p007653' => 'qlo', 'RcHm_v2.0_Chr1g0363121' => 'rch', 'RcHm_v2.0_Chr1g0363131' => 'rch', 'RcHm_v2.0_Chr1g0363141' => 'rch', 'RcHm_v2.0_Chr1g0363161' => 'rch', 'RcHm_v2.0_Chr3g0459831' => 'rch', 'RcHm_v2.0_Chr3g0460331' => 'rch', 'RcHm_v2.0_Chr3g0476661' => 'rch', 'RcHm_v2.0_Chr4g0385781' => 'rch', 'RcHm_v2.0_Chr4g0385921' => 'rch', 'RcHm_v2.0_Chr4g0414621' => 'rch', 'RcHm_v2.0_Chr4g0414631' => 'rch', 'RcHm_v2.0_Chr4g0414641' => 'rch', 'RcHm_v2.0_Chr4g0414691' => 'rch', 'RcHm_v2.0_Chr4g0415011' => 'rch', 'RcHm_v2.0_Chr4g0415031' => 'rch', 'RcHm_v2.0_Chr5g0013061' => 'rch', 'RcHm_v2.0_Chr5g0014451' => 'rch', 'RcHm_v2.0_Chr6g0265521' => 'rch', 'RcHm_v2.0_Chr6g0265531' => 'rch', 'RcHm_v2.0_Chr6g0308401' => 'rch', 'RcHm_v2.0_Chr7g0215881' => 'rch', 'Rhsim09G0057500' => 'rsi', 'Sabra16G0021500' => 'sbr', 'Sabra16G0021600' => 'sbr', 'Sabra16G0026200' => 'sbr', 'Sabra16G0026300' => 'sbr', 'TAR168G0002' => 'tar', 'TAR371G0597' => 'tar', 'TAR625G1076' => 'tar', 'TAR626G1200' => 'tar', 'Thecc.10G162400' => 'tca', 'vmacro08618' => 'vma', 'vmacro15541' => 'vma', 'vmacro15542' => 'vma', 'vmacro15543' => 'vma', 'vmacro15545' => 'vma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002273' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002273' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002273' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002273' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002273', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '296', 'num_species' => '33' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'Actinidia02878' => 'ach', 'Actinidia12852' => 'ach', 'Actinidia27496' => 'ach', 'Actinidia35859' => 'ach', 'Actinidia35860' => 'ach', 'Aqoxy1G02125' => 'aox', 'Aqoxy1G02128' => 'aox', 'Aqoxy1G03845' => 'aox', 'Aqoxy1G04001' => 'aox', 'Aqoxy2G03725' => 'aox', 'Aqoxy2G03726' => 'aox', 'Aqoxy3G00237' => 'aox', 'Aqoxy4G00735' => 'aox', 'Aqoxy4G03043' => 'aox', 'Aqoxy4G03044' => 'aox', 'Aqoxy4G03045' => 'aox', 'Aqoxy4G03046' => 'aox', 'Aqoxy5G01441' => 'aox', 'Aqoxy5G01442' => 'aox', 'Aqoxy6G00736' => 'aox', 'Aqoxy6G01809' => 'aox', 'Aqoxy6G01812' => 'aox', 'Aqoxy6G01816' => 'aox', 'Aqoxy6G01827' => 'aox', 'ATR0733G186' => 'atr', 'Cc10_g05480' => 'ccan', 'Ciclev10007080m.g' => 'ccl', 'Ciclev10007089m.g' => 'ccl', 'CiPaw.15G046800' => 'cil', 'COL.COLO4_06463' => 'col', 'CSS0000286' => 'camsi', 'CSS0003272' => 'camsi', 'CSS0027661' => 'camsi', 'CSS0048802' => 'camsi', 'CSS0050412' => 'camsi', 'DCAR_013123' => 'dca', 'DCAR_013124' => 'dca', 'DCAR_014540' => 'dca', 'DCAR_027683' => 'dca', 'DCAR_027684' => 'dca', 'Dinv10227' => 'din', 'Dinv12946' => 'din', 'Dinv21990' => 'din', 'Dinv25029' => 'din', 'Dinv27227' => 'din', 'Dinv27228' => 'din', 'Dinv30109' => 'din', 'Duzib114G0913' => 'dzi', 'FAN01G0572' => 'fan', 'FAN02G0546' => 'fan', 'FAN02G0662' => 'fan', 'FAN02G1145' => 'fan', 'FAN02G1455' => 'fan', 'FAN02G1515' => 'fan', 'FAN02G2233' => 'fan', 'FAN02G4400' => 'fan', 'FAN03G0826' => 'fan', 'FAN03G1125' => 'fan', 'FAN03G1740' => 'fan', 'FAN04G1634' => 'fan', 'FAN05G0170' => 'fan', 'FAN05G0328' => 'fan', 'FAN05G1262' => 'fan', 'FAN05G2629' => 'fan', 'FAN05G4822' => 'fan', 'FAN06G2377' => 'fan', 'FAN06G4436' => 'fan', 'FAN07G0263' => 'fan', 'FAN07G0910' => 'fan', 'FAN07G1205' => 'fan', 'FAN07G1398' => 'fan', 'FAN07G2815' => 'fan', 'FAN08G1469' => 'fan', 'FAN09G0900' => 'fan', 'FAN09G3910' => 'fan', 'FAN10G1670' => 'fan', 'FAN10G2973' => 'fan', 'FAN10G3567' => 'fan', 'FAN11G0922' => 'fan', 'FAN11G1057' => 'fan', 'FAN11G1149' => 'fan', 'FAN11G1256' => 'fan', 'FAN11G1309' => 'fan', 'FAN11G3011' => 'fan', 'FAN11G3345' => 'fan', 'FAN11G3570' => 'fan', 'FAN11G3950' => 'fan', 'FAN12G1031' => 'fan', 'FAN12G3884' => 'fan', 'FAN13G0296' => 'fan', 'FAN14G0680' => 'fan', 'FAN14G1144' => 'fan', 'FAN14G2176' => 'fan', 'FAN14G3798' => 'fan', 'FAN15G0207' => 'fan', 'FAN15G1613' => 'fan', 'FAN15G1965' => 'fan', 'FAN15G2793' => 'fan', 'FAN16G0184' => 'fan', 'FAN16G1476' => 'fan', 'FAN16G3165' => 'fan', 'FAN16G3222' => 'fan', 'FAN16G3530' => 'fan', 'FAN17G0544' => 'fan', 'FAN18G0741' => 'fan', 'FAN21G0324' => 'fan', 'FAN21G0335' => 'fan', 'FAN21G1445' => 'fan', 'FAN21G1655' => 'fan', 'FAN21G2209' => 'fan', 'FAN21G2498' => 'fan', 'FAN21G3370' => 'fan', 'FAN22G0528' => 'fan', 'FAN22G1558' => 'fan', 'FAN22G1927' => 'fan', 'FAN22G1946' => 'fan', 'FAN23G0636' => 'fan', 'FAN23G2472' => 'fan', 'FAN23G2564' => 'fan', 'FAN25G0350' => 'fan', 'FAN25G1038' => 'fan', 'FAN25G1613' => 'fan', 'FAN25G2869' => 'fan', 'FAN25G3026' => 'fan', 'FAN25G3717' => 'fan', 'FAN25G3871' => 'fan', 'FAN26G2395' => 'fan', 'FAN26G3059' => 'fan', 'FAN27G2306' => 'fan', 'FAN28G1576' => 'fan', 'FvH4_3g05260' => 'fve', 'FvH4_3g05270' => 'fve', 'FvH4_3g06260' => 'fve', 'FvH4_3g09690' => 'fve', 'FvH4_3g12570' => 'fve', 'FvH4_3g33270' => 'fve', 'FvH4_3g33350' => 'fve', 'FvH4_3g38380' => 'fve', 'FvH4_3g39340' => 'fve', 'FvH4_4g13771' => 'fve', 'FvH4_4g13850' => 'fve', 'FvH4_4g13861' => 'fve', 'FvH4_4g13862' => 'fve', 'FvH4_4g13890' => 'fve', 'FvH4_4g13901' => 'fve', 'FvH4_5g24920' => 'fve', 'FvH4_5g30520' => 'fve', 'FvH4_6g07600' => 'fve', 'FvH4_6g07650' => 'fve', 'FvH4_6g09400' => 'fve', 'FvH4_6g09680' => 'fve', 'FvH4_6g09681' => 'fve', 'FvH4_6g09690' => 'fve', 'FvH4_6g20761' => 'fve', 'FvH4_6g20955' => 'fve', 'FvH4_6g47541' => 'fve', 'FvH4_7g19271' => 'fve', 'FvH4_7g19272' => 'fve', 'FvH4_7g19290' => 'fve', 'GSVIVG01005600001' => 'vvi', 'GSVIVG01006146001' => 'vvi', 'GSVIVG01022445001' => 'vvi', 'GSVIVG01022447001' => 'vvi', 'GSVIVG01022448001' => 'vvi', 'GSVIVG01022452001' => 'vvi', 'GSVIVG01022453001' => 'vvi', 'GSVIVG01031558001' => 'vvi', 'GSVIVG01037123001' => 'vvi', 'GSVIVG01037127001' => 'vvi', 'GSVIVG01037129001' => 'vvi', 'GSVIVG01037130001' => 'vvi', 'HanXRQChr07g0185521' => 'han', 'Hma1.2p1_0383F.1_g140320' => 'hma', 'Hma1.2p1_0383F.1_g140340' => 'hma', 'Hma1.2p1_0383F.1_g140410' => 'hma', 'Hma1.2p1_0383F.1_g140440' => 'hma', 'Hma1.2p1_1223F.1_g268330' => 'hma', 'Hma1.2p1_2122F.1_g314510' => 'hma', 'HPP92_012197' => 'vpl', 'HPP92_012335' => 'vpl', 'HPP92_013914' => 'vpl', 'HPP92_013915' => 'vpl', 'HPP92_013985' => 'vpl', 'HPP92_013986' => 'vpl', 'HPP92_015686' => 'vpl', 'HPP92_015687' => 'vpl', 'HPP92_018671' => 'vpl', 'HPP92_018672' => 'vpl', 'HPP92_018673' => 'vpl', 'HPP92_018689' => 'vpl', 'HPP92_018690' => 'vpl', 'HPP92_018691' => 'vpl', 'HPP92_019492' => 'vpl', 'Lj3P407T43' => 'lonja', 'Lj6A535G33' => 'lonja', 'Lj6A536G23' => 'lonja', 'Lj6A538G37' => 'lonja', 'Lj6A538T41' => 'lonja', 'Lj6A538T42' => 'lonja', 'Lj6A539T24' => 'lonja', 'Lj6A539T25' => 'lonja', 'Lj6A540T15' => 'lonja', 'Lj6A542G10' => 'lonja', 'Lj6C536G5' => 'lonja', 'Lj6C540T3' => 'lonja', 'Lj6C540T4' => 'lonja', 'Lj6C541G0' => 'lonja', 'Lj6C542G4' => 'lonja', 'Lj6C542T3' => 'lonja', 'Lj6C545G2' => 'lonja', 'Lj6C545G3' => 'lonja', 'Lj6E539T1' => 'lonja', 'Lj6E539T2' => 'lonja', 'Lj6P537T6' => 'lonja', 'Lj6P541T5' => 'lonja', 'Lsat_1_v5_gn_6_60060' => 'lsa', 'Lsat_1_v5_gn_6_61000' => 'lsa', 'Lsat_1_v5_gn_6_61060' => 'lsa', 'Manes.13G095200' => 'mes', 'MBI02_g25002_MAGBIO' => 'mbi', 'MBI02_g37275_MAGBIO' => 'mbi', 'MBI18_g28202_MAGBIO' => 'mbi', 'MBI18_g28203_MAGBIO' => 'mbi', 'MD04G1010000' => 'mdo', 'MD07G1173200' => 'mdo', 'Nn1g04477' => 'nnu', 'Nn1g04478' => 'nnu', 'Nn1g06062' => 'nnu', 'Nn1g06063' => 'nnu', 'Nn7g37455' => 'nnu', 'Nn8g40653' => 'nnu', 'Nn8g40654' => 'nnu', 'Os03g0638900' => 'osa', 'Os12g0609900' => 'osa', 'Potri.016G019500' => 'ptr', 'Prupe.1G009600' => 'ppe', 'Prupe.1G010100' => 'ppe', 'Prupe.1G010600' => 'ppe', 'Prupe.1G012400' => 'ppe', 'Prupe.1G012600' => 'ppe', 'Prupe.1G012700' => 'ppe', 'Prupe.1G157200' => 'ppe', 'Prupe.1G157300' => 'ppe', 'Prupe.1G157400' => 'ppe', 'Prupe.1G157500' => 'ppe', 'Prupe.1G157600' => 'ppe', 'Prupe.1G157700' => 'ppe', 'Prupe.1G157900' => 'ppe', 'Prupe.1G158000' => 'ppe', 'Prupe.1G158100' => 'ppe', 'Prupe.1G158200' => 'ppe', 'Prupe.2G138900' => 'ppe', 'Prupe.2G212400' => 'ppe', 'Prupe.5G001500' => 'ppe', 'Prupe.6G053000' => 'ppe', 'QL01p032835' => 'qlo', 'QL02p002659' => 'qlo', 'QL08p005039' => 'qlo', 'QL08p005864' => 'qlo', 'QL08p007653' => 'qlo', 'RcHm_v2.0_Chr1g0363121' => 'rch', 'RcHm_v2.0_Chr1g0363131' => 'rch', 'RcHm_v2.0_Chr1g0363141' => 'rch', 'RcHm_v2.0_Chr1g0363161' => 'rch', 'RcHm_v2.0_Chr3g0459831' => 'rch', 'RcHm_v2.0_Chr3g0460331' => 'rch', 'RcHm_v2.0_Chr3g0476661' => 'rch', 'RcHm_v2.0_Chr4g0385781' => 'rch', 'RcHm_v2.0_Chr4g0385921' => 'rch', 'RcHm_v2.0_Chr4g0414621' => 'rch', 'RcHm_v2.0_Chr4g0414631' => 'rch', 'RcHm_v2.0_Chr4g0414641' => 'rch', 'RcHm_v2.0_Chr4g0414691' => 'rch', 'RcHm_v2.0_Chr4g0415011' => 'rch', 'RcHm_v2.0_Chr4g0415031' => 'rch', 'RcHm_v2.0_Chr5g0013061' => 'rch', 'RcHm_v2.0_Chr5g0014451' => 'rch', 'RcHm_v2.0_Chr6g0265521' => 'rch', 'RcHm_v2.0_Chr6g0265531' => 'rch', 'RcHm_v2.0_Chr6g0308401' => 'rch', 'RcHm_v2.0_Chr7g0215881' => 'rch', 'Rhsim09G0057500' => 'rsi', 'Sabra16G0021500' => 'sbr', 'Sabra16G0021600' => 'sbr', 'Sabra16G0026200' => 'sbr', 'Sabra16G0026300' => 'sbr', 'TAR168G0002' => 'tar', 'TAR371G0597' => 'tar', 'TAR625G1076' => 'tar', 'TAR626G1200' => 'tar', 'Thecc.10G162400' => 'tca', 'vmacro08618' => 'vma', 'vmacro15541' => 'vma', 'vmacro15542' => 'vma', 'vmacro15543' => 'vma', 'vmacro15545' => 'vma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002273', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002273' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002273', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '296', 'num_species' => '33' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002273' ) ), 'genes' => array( 'Actinidia02878' => 'ach', 'Actinidia12852' => 'ach', 'Actinidia27496' => 'ach', 'Actinidia35859' => 'ach', 'Actinidia35860' => 'ach', 'Aqoxy1G02125' => 'aox', 'Aqoxy1G02128' => 'aox', 'Aqoxy1G03845' => 'aox', 'Aqoxy1G04001' => 'aox', 'Aqoxy2G03725' => 'aox', 'Aqoxy2G03726' => 'aox', 'Aqoxy3G00237' => 'aox', 'Aqoxy4G00735' => 'aox', 'Aqoxy4G03043' => 'aox', 'Aqoxy4G03044' => 'aox', 'Aqoxy4G03045' => 'aox', 'Aqoxy4G03046' => 'aox', 'Aqoxy5G01441' => 'aox', 'Aqoxy5G01442' => 'aox', 'Aqoxy6G00736' => 'aox', 'Aqoxy6G01809' => 'aox', 'Aqoxy6G01812' => 'aox', 'Aqoxy6G01816' => 'aox', 'Aqoxy6G01827' => 'aox', 'ATR0733G186' => 'atr', 'Cc10_g05480' => 'ccan', 'Ciclev10007080m.g' => 'ccl', 'Ciclev10007089m.g' => 'ccl', 'CiPaw.15G046800' => 'cil', 'COL.COLO4_06463' => 'col', 'CSS0000286' => 'camsi', 'CSS0003272' => 'camsi', 'CSS0027661' => 'camsi', 'CSS0048802' => 'camsi', 'CSS0050412' => 'camsi', 'DCAR_013123' => 'dca', 'DCAR_013124' => 'dca', 'DCAR_014540' => 'dca', 'DCAR_027683' => 'dca', 'DCAR_027684' => 'dca', 'Dinv10227' => 'din', 'Dinv12946' => 'din', 'Dinv21990' => 'din', 'Dinv25029' => 'din', 'Dinv27227' => 'din', 'Dinv27228' => 'din', 'Dinv30109' => 'din', 'Duzib114G0913' => 'dzi', 'FAN01G0572' => 'fan', 'FAN02G0546' => 'fan', 'FAN02G0662' => 'fan', 'FAN02G1145' => 'fan', 'FAN02G1455' => 'fan', 'FAN02G1515' => 'fan', 'FAN02G2233' => 'fan', 'FAN02G4400' => 'fan', 'FAN03G0826' => 'fan', 'FAN03G1125' => 'fan', 'FAN03G1740' => 'fan', 'FAN04G1634' => 'fan', 'FAN05G0170' => 'fan', 'FAN05G0328' => 'fan', 'FAN05G1262' => 'fan', 'FAN05G2629' => 'fan', 'FAN05G4822' => 'fan', 'FAN06G2377' => 'fan', 'FAN06G4436' => 'fan', 'FAN07G0263' => 'fan', 'FAN07G0910' => 'fan', 'FAN07G1205' => 'fan', 'FAN07G1398' => 'fan', 'FAN07G2815' => 'fan', 'FAN08G1469' => 'fan', 'FAN09G0900' => 'fan', 'FAN09G3910' => 'fan', 'FAN10G1670' => 'fan', 'FAN10G2973' => 'fan', 'FAN10G3567' => 'fan', 'FAN11G0922' => 'fan', 'FAN11G1057' => 'fan', 'FAN11G1149' => 'fan', 'FAN11G1256' => 'fan', 'FAN11G1309' => 'fan', 'FAN11G3011' => 'fan', 'FAN11G3345' => 'fan', 'FAN11G3570' => 'fan', 'FAN11G3950' => 'fan', 'FAN12G1031' => 'fan', 'FAN12G3884' => 'fan', 'FAN13G0296' => 'fan', 'FAN14G0680' => 'fan', 'FAN14G1144' => 'fan', 'FAN14G2176' => 'fan', 'FAN14G3798' => 'fan', 'FAN15G0207' => 'fan', 'FAN15G1613' => 'fan', 'FAN15G1965' => 'fan', 'FAN15G2793' => 'fan', 'FAN16G0184' => 'fan', 'FAN16G1476' => 'fan', 'FAN16G3165' => 'fan', 'FAN16G3222' => 'fan', 'FAN16G3530' => 'fan', 'FAN17G0544' => 'fan', 'FAN18G0741' => 'fan', 'FAN21G0324' => 'fan', 'FAN21G0335' => 'fan', 'FAN21G1445' => 'fan', 'FAN21G1655' => 'fan', 'FAN21G2209' => 'fan', 'FAN21G2498' => 'fan', 'FAN21G3370' => 'fan', 'FAN22G0528' => 'fan', 'FAN22G1558' => 'fan', 'FAN22G1927' => 'fan', 'FAN22G1946' => 'fan', 'FAN23G0636' => 'fan', 'FAN23G2472' => 'fan', 'FAN23G2564' => 'fan', 'FAN25G0350' => 'fan', 'FAN25G1038' => 'fan', 'FAN25G1613' => 'fan', 'FAN25G2869' => 'fan', 'FAN25G3026' => 'fan', 'FAN25G3717' => 'fan', 'FAN25G3871' => 'fan', 'FAN26G2395' => 'fan', 'FAN26G3059' => 'fan', 'FAN27G2306' => 'fan', 'FAN28G1576' => 'fan', 'FvH4_3g05260' => 'fve', 'FvH4_3g05270' => 'fve', 'FvH4_3g06260' => 'fve', 'FvH4_3g09690' => 'fve', 'FvH4_3g12570' => 'fve', 'FvH4_3g33270' => 'fve', 'FvH4_3g33350' => 'fve', 'FvH4_3g38380' => 'fve', 'FvH4_3g39340' => 'fve', 'FvH4_4g13771' => 'fve', 'FvH4_4g13850' => 'fve', 'FvH4_4g13861' => 'fve', 'FvH4_4g13862' => 'fve', 'FvH4_4g13890' => 'fve', 'FvH4_4g13901' => 'fve', 'FvH4_5g24920' => 'fve', 'FvH4_5g30520' => 'fve', 'FvH4_6g07600' => 'fve', 'FvH4_6g07650' => 'fve', 'FvH4_6g09400' => 'fve', 'FvH4_6g09680' => 'fve', 'FvH4_6g09681' => 'fve', 'FvH4_6g09690' => 'fve', 'FvH4_6g20761' => 'fve', 'FvH4_6g20955' => 'fve', 'FvH4_6g47541' => 'fve', 'FvH4_7g19271' => 'fve', 'FvH4_7g19272' => 'fve', 'FvH4_7g19290' => 'fve', 'GSVIVG01005600001' => 'vvi', 'GSVIVG01006146001' => 'vvi', 'GSVIVG01022445001' => 'vvi', 'GSVIVG01022447001' => 'vvi', 'GSVIVG01022448001' => 'vvi', 'GSVIVG01022452001' => 'vvi', 'GSVIVG01022453001' => 'vvi', 'GSVIVG01031558001' => 'vvi', 'GSVIVG01037123001' => 'vvi', 'GSVIVG01037127001' => 'vvi', 'GSVIVG01037129001' => 'vvi', 'GSVIVG01037130001' => 'vvi', 'HanXRQChr07g0185521' => 'han', 'Hma1.2p1_0383F.1_g140320' => 'hma', 'Hma1.2p1_0383F.1_g140340' => 'hma', 'Hma1.2p1_0383F.1_g140410' => 'hma', 'Hma1.2p1_0383F.1_g140440' => 'hma', 'Hma1.2p1_1223F.1_g268330' => 'hma', 'Hma1.2p1_2122F.1_g314510' => 'hma', 'HPP92_012197' => 'vpl', 'HPP92_012335' => 'vpl', 'HPP92_013914' => 'vpl', 'HPP92_013915' => 'vpl', 'HPP92_013985' => 'vpl', 'HPP92_013986' => 'vpl', 'HPP92_015686' => 'vpl', 'HPP92_015687' => 'vpl', 'HPP92_018671' => 'vpl', 'HPP92_018672' => 'vpl', 'HPP92_018673' => 'vpl', 'HPP92_018689' => 'vpl', 'HPP92_018690' => 'vpl', 'HPP92_018691' => 'vpl', 'HPP92_019492' => 'vpl', 'Lj3P407T43' => 'lonja', 'Lj6A535G33' => 'lonja', 'Lj6A536G23' => 'lonja', 'Lj6A538G37' => 'lonja', 'Lj6A538T41' => 'lonja', 'Lj6A538T42' => 'lonja', 'Lj6A539T24' => 'lonja', 'Lj6A539T25' => 'lonja', 'Lj6A540T15' => 'lonja', 'Lj6A542G10' => 'lonja', 'Lj6C536G5' => 'lonja', 'Lj6C540T3' => 'lonja', 'Lj6C540T4' => 'lonja', 'Lj6C541G0' => 'lonja', 'Lj6C542G4' => 'lonja', 'Lj6C542T3' => 'lonja', 'Lj6C545G2' => 'lonja', 'Lj6C545G3' => 'lonja', 'Lj6E539T1' => 'lonja', 'Lj6E539T2' => 'lonja', 'Lj6P537T6' => 'lonja', 'Lj6P541T5' => 'lonja', 'Lsat_1_v5_gn_6_60060' => 'lsa', 'Lsat_1_v5_gn_6_61000' => 'lsa', 'Lsat_1_v5_gn_6_61060' => 'lsa', 'Manes.13G095200' => 'mes', 'MBI02_g25002_MAGBIO' => 'mbi', 'MBI02_g37275_MAGBIO' => 'mbi', 'MBI18_g28202_MAGBIO' => 'mbi', 'MBI18_g28203_MAGBIO' => 'mbi', 'MD04G1010000' => 'mdo', 'MD07G1173200' => 'mdo', 'Nn1g04477' => 'nnu', 'Nn1g04478' => 'nnu', 'Nn1g06062' => 'nnu', 'Nn1g06063' => 'nnu', 'Nn7g37455' => 'nnu', 'Nn8g40653' => 'nnu', 'Nn8g40654' => 'nnu', 'Os03g0638900' => 'osa', 'Os12g0609900' => 'osa', 'Potri.016G019500' => 'ptr', 'Prupe.1G009600' => 'ppe', 'Prupe.1G010100' => 'ppe', 'Prupe.1G010600' => 'ppe', 'Prupe.1G012400' => 'ppe', 'Prupe.1G012600' => 'ppe', 'Prupe.1G012700' => 'ppe', 'Prupe.1G157200' => 'ppe', 'Prupe.1G157300' => 'ppe', 'Prupe.1G157400' => 'ppe', 'Prupe.1G157500' => 'ppe', 'Prupe.1G157600' => 'ppe', 'Prupe.1G157700' => 'ppe', 'Prupe.1G157900' => 'ppe', 'Prupe.1G158000' => 'ppe', 'Prupe.1G158100' => 'ppe', 'Prupe.1G158200' => 'ppe', 'Prupe.2G138900' => 'ppe', 'Prupe.2G212400' => 'ppe', 'Prupe.5G001500' => 'ppe', 'Prupe.6G053000' => 'ppe', 'QL01p032835' => 'qlo', 'QL02p002659' => 'qlo', 'QL08p005039' => 'qlo', 'QL08p005864' => 'qlo', 'QL08p007653' => 'qlo', 'RcHm_v2.0_Chr1g0363121' => 'rch', 'RcHm_v2.0_Chr1g0363131' => 'rch', 'RcHm_v2.0_Chr1g0363141' => 'rch', 'RcHm_v2.0_Chr1g0363161' => 'rch', 'RcHm_v2.0_Chr3g0459831' => 'rch', 'RcHm_v2.0_Chr3g0460331' => 'rch', 'RcHm_v2.0_Chr3g0476661' => 'rch', 'RcHm_v2.0_Chr4g0385781' => 'rch', 'RcHm_v2.0_Chr4g0385921' => 'rch', 'RcHm_v2.0_Chr4g0414621' => 'rch', 'RcHm_v2.0_Chr4g0414631' => 'rch', 'RcHm_v2.0_Chr4g0414641' => 'rch', 'RcHm_v2.0_Chr4g0414691' => 'rch', 'RcHm_v2.0_Chr4g0415011' => 'rch', 'RcHm_v2.0_Chr4g0415031' => 'rch', 'RcHm_v2.0_Chr5g0013061' => 'rch', 'RcHm_v2.0_Chr5g0014451' => 'rch', 'RcHm_v2.0_Chr6g0265521' => 'rch', 'RcHm_v2.0_Chr6g0265531' => 'rch', 'RcHm_v2.0_Chr6g0308401' => 'rch', 'RcHm_v2.0_Chr7g0215881' => 'rch', 'Rhsim09G0057500' => 'rsi', 'Sabra16G0021500' => 'sbr', 'Sabra16G0021600' => 'sbr', 'Sabra16G0026200' => 'sbr', 'Sabra16G0026300' => 'sbr', 'TAR168G0002' => 'tar', 'TAR371G0597' => 'tar', 'TAR625G1076' => 'tar', 'TAR626G1200' => 'tar', 'Thecc.10G162400' => 'tca', 'vmacro08618' => 'vma', 'vmacro15541' => 'vma', 'vmacro15542' => 'vma', 'vmacro15543' => 'vma', 'vmacro15545' => 'vma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002273' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002273' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002273' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002273' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151