Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002261', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '298', 'num_species' => '7' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'CAN.G1003.1' => 'can', 'CAN.G129.27' => 'can', 'CAN.G135.43' => 'can', 'CAN.G15.23' => 'can', 'CAN.G165.11' => 'can', 'CAN.G165.12' => 'can', 'CAN.G170.120' => 'can', 'CAN.G205.2' => 'can', 'CAN.G217.13' => 'can', 'CAN.G217.14' => 'can', 'CAN.G22.6' => 'can', 'CAN.G223.2' => 'can', 'CAN.G255.16' => 'can', 'CAN.G280.21' => 'can', 'CAN.G315.7' => 'can', 'CAN.G339.20' => 'can', 'CAN.G352.57' => 'can', 'CAN.G352.58' => 'can', 'CAN.G446.10' => 'can', 'CAN.G499.5' => 'can', 'CAN.G5.31' => 'can', 'CAN.G619.1' => 'can', 'CAN.G765.17' => 'can', 'CAN.G784.3' => 'can', 'CAN.G864.2' => 'can', 'CAN.G933.9' => 'can', 'CSS0028456' => 'camsi', 'Nitab4.5_0000015g0360' => 'nta', 'Nitab4.5_0000062g0020' => 'nta', 'Nitab4.5_0000091g0340' => 'nta', 'Nitab4.5_0000091g0350' => 'nta', 'Nitab4.5_0000091g0370' => 'nta', 'Nitab4.5_0000105g0350' => 'nta', 'Nitab4.5_0000113g0330' => 'nta', 'Nitab4.5_0000113g0340' => 'nta', 'Nitab4.5_0000119g0230' => 'nta', 'Nitab4.5_0000230g0090' => 'nta', 'Nitab4.5_0000230g0260' => 'nta', 'Nitab4.5_0000231g0450' => 'nta', 'Nitab4.5_0000250g0180' => 'nta', 'Nitab4.5_0000317g0010' => 'nta', 'Nitab4.5_0000336g0030' => 'nta', 'Nitab4.5_0000402g0090' => 'nta', 'Nitab4.5_0000402g0100' => 'nta', 'Nitab4.5_0000443g0120' => 'nta', 'Nitab4.5_0000517g0100' => 'nta', 'Nitab4.5_0000570g0150' => 'nta', 'Nitab4.5_0000570g0170' => 'nta', 'Nitab4.5_0000578g0030' => 'nta', 'Nitab4.5_0000600g0030' => 'nta', 'Nitab4.5_0000600g0040' => 'nta', 'Nitab4.5_0000605g0050' => 'nta', 'Nitab4.5_0000616g0040' => 'nta', 'Nitab4.5_0000659g0060' => 'nta', 'Nitab4.5_0000659g0070' => 'nta', 'Nitab4.5_0000754g0300' => 'nta', 'Nitab4.5_0000842g0080' => 'nta', 'Nitab4.5_0000877g0030' => 'nta', 'Nitab4.5_0000890g0030' => 'nta', 'Nitab4.5_0000890g0060' => 'nta', 'Nitab4.5_0000901g0030' => 'nta', 'Nitab4.5_0000941g0020' => 'nta', 'Nitab4.5_0000958g0040' => 'nta', 'Nitab4.5_0000958g0050' => 'nta', 'Nitab4.5_0001057g0080' => 'nta', 'Nitab4.5_0001280g0040' => 'nta', 'Nitab4.5_0001372g0040' => 'nta', 'Nitab4.5_0001504g0150' => 'nta', 'Nitab4.5_0001522g0080' => 'nta', 'Nitab4.5_0001568g0120' => 'nta', 'Nitab4.5_0001604g0090' => 'nta', 'Nitab4.5_0001659g0090' => 'nta', 'Nitab4.5_0001709g0100' => 'nta', 'Nitab4.5_0001755g0030' => 'nta', 'Nitab4.5_0001879g0040' => 'nta', 'Nitab4.5_0001879g0060' => 'nta', 'Nitab4.5_0001899g0050' => 'nta', 'Nitab4.5_0002052g0140' => 'nta', 'Nitab4.5_0002141g0030' => 'nta', 'Nitab4.5_0002219g0070' => 'nta', 'Nitab4.5_0002219g0080' => 'nta', 'Nitab4.5_0002221g0080' => 'nta', 'Nitab4.5_0002221g0090' => 'nta', 'Nitab4.5_0002374g0030' => 'nta', 'Nitab4.5_0002427g0030' => 'nta', 'Nitab4.5_0002569g0120' => 'nta', 'Nitab4.5_0002588g0010' => 'nta', 'Nitab4.5_0002591g0030' => 'nta', 'Nitab4.5_0002591g0060' => 'nta', 'Nitab4.5_0002625g0050' => 'nta', 'Nitab4.5_0002628g0030' => 'nta', 'Nitab4.5_0002668g0050' => 'nta', 'Nitab4.5_0002800g0010' => 'nta', 'Nitab4.5_0002942g0030' => 'nta', 'Nitab4.5_0002942g0050' => 'nta', 'Nitab4.5_0002942g0070' => 'nta', 'Nitab4.5_0003011g0030' => 'nta', 'Nitab4.5_0003011g0040' => 'nta', 'Nitab4.5_0003011g0050' => 'nta', 'Nitab4.5_0003152g0090' => 'nta', 'Nitab4.5_0003285g0010' => 'nta', 'Nitab4.5_0003349g0050' => 'nta', 'Nitab4.5_0003349g0060' => 'nta', 'Nitab4.5_0003524g0030' => 'nta', 'Nitab4.5_0003673g0010' => 'nta', 'Nitab4.5_0003721g0050' => 'nta', 'Nitab4.5_0003829g0010' => 'nta', 'Nitab4.5_0003861g0050' => 'nta', 'Nitab4.5_0004225g0020' => 'nta', 'Nitab4.5_0004247g0010' => 'nta', 'Nitab4.5_0004260g0010' => 'nta', 'Nitab4.5_0004316g0010' => 'nta', 'Nitab4.5_0004688g0040' => 'nta', 'Nitab4.5_0004688g0090' => 'nta', 'Nitab4.5_0004746g0010' => 'nta', 'Nitab4.5_0004971g0010' => 'nta', 'Nitab4.5_0005023g0020' => 'nta', 'Nitab4.5_0005054g0010' => 'nta', 'Nitab4.5_0005054g0030' => 'nta', 'Nitab4.5_0005054g0050' => 'nta', 'Nitab4.5_0005104g0040' => 'nta', 'Nitab4.5_0005200g0070' => 'nta', 'Nitab4.5_0005423g0060' => 'nta', 'Nitab4.5_0005624g0030' => 'nta', 'Nitab4.5_0005624g0050' => 'nta', 'Nitab4.5_0005642g0030' => 'nta', 'Nitab4.5_0005791g0040' => 'nta', 'Nitab4.5_0005917g0010' => 'nta', 'Nitab4.5_0006241g0060' => 'nta', 'Nitab4.5_0006526g0040' => 'nta', 'Nitab4.5_0006660g0010' => 'nta', 'Nitab4.5_0006835g0020' => 'nta', 'Nitab4.5_0006911g0010' => 'nta', 'Nitab4.5_0006911g0020' => 'nta', 'Nitab4.5_0007024g0040' => 'nta', 'Nitab4.5_0007046g0020' => 'nta', 'Nitab4.5_0007441g0010' => 'nta', 'Nitab4.5_0007866g0010' => 'nta', 'Nitab4.5_0007866g0020' => 'nta', 'Nitab4.5_0007866g0030' => 'nta', 'Nitab4.5_0007884g0010' => 'nta', 'Nitab4.5_0008074g0040' => 'nta', 'Nitab4.5_0008844g0010' => 'nta', 'Nitab4.5_0009021g0020' => 'nta', 'Nitab4.5_0009094g0010' => 'nta', 'Nitab4.5_0009143g0010' => 'nta', 'Nitab4.5_0009143g0020' => 'nta', 'Nitab4.5_0009613g0030' => 'nta', 'Nitab4.5_0009745g0010' => 'nta', 'Nitab4.5_0009754g0030' => 'nta', 'Nitab4.5_0009848g0010' => 'nta', 'Nitab4.5_0009868g0050' => 'nta', 'Nitab4.5_0009878g0030' => 'nta', 'Nitab4.5_0009976g0010' => 'nta', 'Nitab4.5_0010073g0030' => 'nta', 'Nitab4.5_0011225g0010' => 'nta', 'Nitab4.5_0011520g0010' => 'nta', 'Nitab4.5_0011586g0010' => 'nta', 'Nitab4.5_0011589g0010' => 'nta', 'Nitab4.5_0011868g0010' => 'nta', 'Nitab4.5_0012306g0030' => 'nta', 'Nitab4.5_0012627g0010' => 'nta', 'Nitab4.5_0012917g0020' => 'nta', 'Nitab4.5_0013103g0010' => 'nta', 'Nitab4.5_0013103g0020' => 'nta', 'Nitab4.5_0013711g0010' => 'nta', 'Nitab4.5_0014025g0010' => 'nta', 'Nitab4.5_0014440g0010' => 'nta', 'Nitab4.5_0016697g0010' => 'nta', 'Nitab4.5_0019209g0010' => 'nta', 'Nitab4.5_0019514g0010' => 'nta', 'Nitab4.5_0019635g0010' => 'nta', 'Nitab4.5_0022906g0010' => 'nta', 'Nitab4.5_0028843g0010' => 'nta', 'Peaxi162Scf00007g01337' => 'pax', 'Peaxi162Scf00020g01022' => 'pax', 'Peaxi162Scf00020g01029' => 'pax', 'Peaxi162Scf00021g02527' => 'pax', 'Peaxi162Scf00028g00075' => 'pax', 'Peaxi162Scf00033g00212' => 'pax', 'Peaxi162Scf00033g00215' => 'pax', 'Peaxi162Scf00044g00014' => 'pax', 'Peaxi162Scf00047g00443' => 'pax', 'Peaxi162Scf00098g01534' => 'pax', 'Peaxi162Scf00098g01535' => 'pax', 'Peaxi162Scf00111g00518' => 'pax', 'Peaxi162Scf00131g00001' => 'pax', 'Peaxi162Scf00158g00318' => 'pax', 'Peaxi162Scf00164g00088' => 'pax', 'Peaxi162Scf00175g00342' => 'pax', 'Peaxi162Scf00176g00025' => 'pax', 'Peaxi162Scf00206g00046' => 'pax', 'Peaxi162Scf00211g00164' => 'pax', 'Peaxi162Scf00224g00009' => 'pax', 'Peaxi162Scf00285g00007' => 'pax', 'Peaxi162Scf00308g00076' => 'pax', 'Peaxi162Scf00345g00126' => 'pax', 'Peaxi162Scf00357g00621' => 'pax', 'Peaxi162Scf00363g00012' => 'pax', 'Peaxi162Scf00371g00312' => 'pax', 'Peaxi162Scf00371g00316' => 'pax', 'Peaxi162Scf00434g00033' => 'pax', 'Peaxi162Scf00519g00002' => 'pax', 'Peaxi162Scf00527g00077' => 'pax', 'Peaxi162Scf00528g00122' => 'pax', 'Peaxi162Scf00558g00118' => 'pax', 'Peaxi162Scf00565g00829' => 'pax', 'Peaxi162Scf00566g00069' => 'pax', 'Peaxi162Scf00582g00016' => 'pax', 'Peaxi162Scf00582g00019' => 'pax', 'Peaxi162Scf00586g00013' => 'pax', 'Peaxi162Scf00620g00218' => 'pax', 'Peaxi162Scf00677g10012' => 'pax', 'Peaxi162Scf00752g00055' => 'pax', 'Peaxi162Scf00752g00068' => 'pax', 'Peaxi162Scf00752g00610' => 'pax', 'Peaxi162Scf00795g00069' => 'pax', 'Peaxi162Scf00809g00418' => 'pax', 'Peaxi162Scf00842g00011' => 'pax', 'Peaxi162Scf00951g00019' => 'pax', 'Peaxi162Scf01253g00018' => 'pax', 'Peaxi162Scf01253g00023' => 'pax', 'Peaxi162Scf01464g00010' => 'pax', 'Peaxi162Scf03993g00002' => 'pax', 'Peaxi162Scf07758g00001' => 'pax', 'PGSC0003DMG400001258' => 'stu', 'PGSC0003DMG400001679' => 'stu', 'PGSC0003DMG400003268' => 'stu', 'PGSC0003DMG400006719' => 'stu', 'PGSC0003DMG400006953' => 'stu', 'PGSC0003DMG400009893' => 'stu', 'PGSC0003DMG400013166' => 'stu', 'PGSC0003DMG400013712' => 'stu', 'PGSC0003DMG400015528' => 'stu', 'PGSC0003DMG400017531' => 'stu', 'PGSC0003DMG400017712' => 'stu', 'PGSC0003DMG400020377' => 'stu', 'PGSC0003DMG400020694' => 'stu', 'PGSC0003DMG400021293' => 'stu', 'PGSC0003DMG400021840' => 'stu', 'PGSC0003DMG400021867' => 'stu', 'PGSC0003DMG400022355' => 'stu', 'PGSC0003DMG400023096' => 'stu', 'PGSC0003DMG400024382' => 'stu', 'PGSC0003DMG400024760' => 'stu', 'PGSC0003DMG400025489' => 'stu', 'PGSC0003DMG400026495' => 'stu', 'PGSC0003DMG400027837' => 'stu', 'PGSC0003DMG400029822' => 'stu', 'PGSC0003DMG400029865' => 'stu', 'PGSC0003DMG400030801' => 'stu', 'PGSC0003DMG400033169' => 'stu', 'PGSC0003DMG400033635' => 'stu', 'PGSC0003DMG400041066' => 'stu', 'PGSC0003DMG400044414' => 'stu', 'PGSC0003DMG401008657' => 'stu', 'PGSC0003DMG401017944' => 'stu', 'PGSC0003DMG401021841' => 'stu', 'PGSC0003DMG401024222' => 'stu', 'PGSC0003DMG402005640' => 'stu', 'PGSC0003DMG402010367' => 'stu', 'Solyc01g057165.1' => 'sly', 'Solyc01g057390.2' => 'sly', 'Solyc01g066612.1' => 'sly', 'Solyc01g066616.1' => 'sly', 'Solyc02g005070.3' => 'sly', 'Solyc02g038640.3' => 'sly', 'Solyc02g050265.1' => 'sly', 'Solyc03g044833.1' => 'sly', 'Solyc03g150112.1' => 'sly', 'Solyc04g025320.2' => 'sly', 'Solyc05g017795.1' => 'sly', 'Solyc05g017797.1' => 'sly', 'Solyc05g041780.1' => 'sly', 'Solyc07g014750.1' => 'sly', 'Solyc07g021465.1' => 'sly', 'Solyc08g042070.2' => 'sly', 'Solyc09g015140.2' => 'sly', 'Solyc11g013730.3' => 'sly', 'Solyc11g150110.1' => 'sly', 'Solyc12g042110.3' => 'sly', 'Sopen01g022130' => 'spe', 'Sopen02g008580' => 'spe', 'Sopen03g007870' => 'spe', 'Sopen03g024550' => 'spe', 'Sopen04g013910' => 'spe', 'Sopen04g022620' => 'spe', 'Sopen05g027490' => 'spe', 'Sopen06g019020' => 'spe', 'Sopen07g022080' => 'spe', 'Sopen08g012520' => 'spe', 'Sopen09g011030' => 'spe', 'Sopen09g021920' => 'spe', 'Sopen10g004570' => 'spe', 'Sopen10g020420' => 'spe', 'Sopen11g020370' => 'spe', 'Sopen12g016550' => 'spe', 'Sopen12g021190' => 'spe' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002261', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002261' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002261', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '298', 'num_species' => '7' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002261' ) ), 'genes' => array( 'CAN.G1003.1' => 'can', 'CAN.G129.27' => 'can', 'CAN.G135.43' => 'can', 'CAN.G15.23' => 'can', 'CAN.G165.11' => 'can', 'CAN.G165.12' => 'can', 'CAN.G170.120' => 'can', 'CAN.G205.2' => 'can', 'CAN.G217.13' => 'can', 'CAN.G217.14' => 'can', 'CAN.G22.6' => 'can', 'CAN.G223.2' => 'can', 'CAN.G255.16' => 'can', 'CAN.G280.21' => 'can', 'CAN.G315.7' => 'can', 'CAN.G339.20' => 'can', 'CAN.G352.57' => 'can', 'CAN.G352.58' => 'can', 'CAN.G446.10' => 'can', 'CAN.G499.5' => 'can', 'CAN.G5.31' => 'can', 'CAN.G619.1' => 'can', 'CAN.G765.17' => 'can', 'CAN.G784.3' => 'can', 'CAN.G864.2' => 'can', 'CAN.G933.9' => 'can', 'CSS0028456' => 'camsi', 'Nitab4.5_0000015g0360' => 'nta', 'Nitab4.5_0000062g0020' => 'nta', 'Nitab4.5_0000091g0340' => 'nta', 'Nitab4.5_0000091g0350' => 'nta', 'Nitab4.5_0000091g0370' => 'nta', 'Nitab4.5_0000105g0350' => 'nta', 'Nitab4.5_0000113g0330' => 'nta', 'Nitab4.5_0000113g0340' => 'nta', 'Nitab4.5_0000119g0230' => 'nta', 'Nitab4.5_0000230g0090' => 'nta', 'Nitab4.5_0000230g0260' => 'nta', 'Nitab4.5_0000231g0450' => 'nta', 'Nitab4.5_0000250g0180' => 'nta', 'Nitab4.5_0000317g0010' => 'nta', 'Nitab4.5_0000336g0030' => 'nta', 'Nitab4.5_0000402g0090' => 'nta', 'Nitab4.5_0000402g0100' => 'nta', 'Nitab4.5_0000443g0120' => 'nta', 'Nitab4.5_0000517g0100' => 'nta', 'Nitab4.5_0000570g0150' => 'nta', 'Nitab4.5_0000570g0170' => 'nta', 'Nitab4.5_0000578g0030' => 'nta', 'Nitab4.5_0000600g0030' => 'nta', 'Nitab4.5_0000600g0040' => 'nta', 'Nitab4.5_0000605g0050' => 'nta', 'Nitab4.5_0000616g0040' => 'nta', 'Nitab4.5_0000659g0060' => 'nta', 'Nitab4.5_0000659g0070' => 'nta', 'Nitab4.5_0000754g0300' => 'nta', 'Nitab4.5_0000842g0080' => 'nta', 'Nitab4.5_0000877g0030' => 'nta', 'Nitab4.5_0000890g0030' => 'nta', 'Nitab4.5_0000890g0060' => 'nta', 'Nitab4.5_0000901g0030' => 'nta', 'Nitab4.5_0000941g0020' => 'nta', 'Nitab4.5_0000958g0040' => 'nta', 'Nitab4.5_0000958g0050' => 'nta', 'Nitab4.5_0001057g0080' => 'nta', 'Nitab4.5_0001280g0040' => 'nta', 'Nitab4.5_0001372g0040' => 'nta', 'Nitab4.5_0001504g0150' => 'nta', 'Nitab4.5_0001522g0080' => 'nta', 'Nitab4.5_0001568g0120' => 'nta', 'Nitab4.5_0001604g0090' => 'nta', 'Nitab4.5_0001659g0090' => 'nta', 'Nitab4.5_0001709g0100' => 'nta', 'Nitab4.5_0001755g0030' => 'nta', 'Nitab4.5_0001879g0040' => 'nta', 'Nitab4.5_0001879g0060' => 'nta', 'Nitab4.5_0001899g0050' => 'nta', 'Nitab4.5_0002052g0140' => 'nta', 'Nitab4.5_0002141g0030' => 'nta', 'Nitab4.5_0002219g0070' => 'nta', 'Nitab4.5_0002219g0080' => 'nta', 'Nitab4.5_0002221g0080' => 'nta', 'Nitab4.5_0002221g0090' => 'nta', 'Nitab4.5_0002374g0030' => 'nta', 'Nitab4.5_0002427g0030' => 'nta', 'Nitab4.5_0002569g0120' => 'nta', 'Nitab4.5_0002588g0010' => 'nta', 'Nitab4.5_0002591g0030' => 'nta', 'Nitab4.5_0002591g0060' => 'nta', 'Nitab4.5_0002625g0050' => 'nta', 'Nitab4.5_0002628g0030' => 'nta', 'Nitab4.5_0002668g0050' => 'nta', 'Nitab4.5_0002800g0010' => 'nta', 'Nitab4.5_0002942g0030' => 'nta', 'Nitab4.5_0002942g0050' => 'nta', 'Nitab4.5_0002942g0070' => 'nta', 'Nitab4.5_0003011g0030' => 'nta', 'Nitab4.5_0003011g0040' => 'nta', 'Nitab4.5_0003011g0050' => 'nta', 'Nitab4.5_0003152g0090' => 'nta', 'Nitab4.5_0003285g0010' => 'nta', 'Nitab4.5_0003349g0050' => 'nta', 'Nitab4.5_0003349g0060' => 'nta', 'Nitab4.5_0003524g0030' => 'nta', 'Nitab4.5_0003673g0010' => 'nta', 'Nitab4.5_0003721g0050' => 'nta', 'Nitab4.5_0003829g0010' => 'nta', 'Nitab4.5_0003861g0050' => 'nta', 'Nitab4.5_0004225g0020' => 'nta', 'Nitab4.5_0004247g0010' => 'nta', 'Nitab4.5_0004260g0010' => 'nta', 'Nitab4.5_0004316g0010' => 'nta', 'Nitab4.5_0004688g0040' => 'nta', 'Nitab4.5_0004688g0090' => 'nta', 'Nitab4.5_0004746g0010' => 'nta', 'Nitab4.5_0004971g0010' => 'nta', 'Nitab4.5_0005023g0020' => 'nta', 'Nitab4.5_0005054g0010' => 'nta', 'Nitab4.5_0005054g0030' => 'nta', 'Nitab4.5_0005054g0050' => 'nta', 'Nitab4.5_0005104g0040' => 'nta', 'Nitab4.5_0005200g0070' => 'nta', 'Nitab4.5_0005423g0060' => 'nta', 'Nitab4.5_0005624g0030' => 'nta', 'Nitab4.5_0005624g0050' => 'nta', 'Nitab4.5_0005642g0030' => 'nta', 'Nitab4.5_0005791g0040' => 'nta', 'Nitab4.5_0005917g0010' => 'nta', 'Nitab4.5_0006241g0060' => 'nta', 'Nitab4.5_0006526g0040' => 'nta', 'Nitab4.5_0006660g0010' => 'nta', 'Nitab4.5_0006835g0020' => 'nta', 'Nitab4.5_0006911g0010' => 'nta', 'Nitab4.5_0006911g0020' => 'nta', 'Nitab4.5_0007024g0040' => 'nta', 'Nitab4.5_0007046g0020' => 'nta', 'Nitab4.5_0007441g0010' => 'nta', 'Nitab4.5_0007866g0010' => 'nta', 'Nitab4.5_0007866g0020' => 'nta', 'Nitab4.5_0007866g0030' => 'nta', 'Nitab4.5_0007884g0010' => 'nta', 'Nitab4.5_0008074g0040' => 'nta', 'Nitab4.5_0008844g0010' => 'nta', 'Nitab4.5_0009021g0020' => 'nta', 'Nitab4.5_0009094g0010' => 'nta', 'Nitab4.5_0009143g0010' => 'nta', 'Nitab4.5_0009143g0020' => 'nta', 'Nitab4.5_0009613g0030' => 'nta', 'Nitab4.5_0009745g0010' => 'nta', 'Nitab4.5_0009754g0030' => 'nta', 'Nitab4.5_0009848g0010' => 'nta', 'Nitab4.5_0009868g0050' => 'nta', 'Nitab4.5_0009878g0030' => 'nta', 'Nitab4.5_0009976g0010' => 'nta', 'Nitab4.5_0010073g0030' => 'nta', 'Nitab4.5_0011225g0010' => 'nta', 'Nitab4.5_0011520g0010' => 'nta', 'Nitab4.5_0011586g0010' => 'nta', 'Nitab4.5_0011589g0010' => 'nta', 'Nitab4.5_0011868g0010' => 'nta', 'Nitab4.5_0012306g0030' => 'nta', 'Nitab4.5_0012627g0010' => 'nta', 'Nitab4.5_0012917g0020' => 'nta', 'Nitab4.5_0013103g0010' => 'nta', 'Nitab4.5_0013103g0020' => 'nta', 'Nitab4.5_0013711g0010' => 'nta', 'Nitab4.5_0014025g0010' => 'nta', 'Nitab4.5_0014440g0010' => 'nta', 'Nitab4.5_0016697g0010' => 'nta', 'Nitab4.5_0019209g0010' => 'nta', 'Nitab4.5_0019514g0010' => 'nta', 'Nitab4.5_0019635g0010' => 'nta', 'Nitab4.5_0022906g0010' => 'nta', 'Nitab4.5_0028843g0010' => 'nta', 'Peaxi162Scf00007g01337' => 'pax', 'Peaxi162Scf00020g01022' => 'pax', 'Peaxi162Scf00020g01029' => 'pax', 'Peaxi162Scf00021g02527' => 'pax', 'Peaxi162Scf00028g00075' => 'pax', 'Peaxi162Scf00033g00212' => 'pax', 'Peaxi162Scf00033g00215' => 'pax', 'Peaxi162Scf00044g00014' => 'pax', 'Peaxi162Scf00047g00443' => 'pax', 'Peaxi162Scf00098g01534' => 'pax', 'Peaxi162Scf00098g01535' => 'pax', 'Peaxi162Scf00111g00518' => 'pax', 'Peaxi162Scf00131g00001' => 'pax', 'Peaxi162Scf00158g00318' => 'pax', 'Peaxi162Scf00164g00088' => 'pax', 'Peaxi162Scf00175g00342' => 'pax', 'Peaxi162Scf00176g00025' => 'pax', 'Peaxi162Scf00206g00046' => 'pax', 'Peaxi162Scf00211g00164' => 'pax', 'Peaxi162Scf00224g00009' => 'pax', 'Peaxi162Scf00285g00007' => 'pax', 'Peaxi162Scf00308g00076' => 'pax', 'Peaxi162Scf00345g00126' => 'pax', 'Peaxi162Scf00357g00621' => 'pax', 'Peaxi162Scf00363g00012' => 'pax', 'Peaxi162Scf00371g00312' => 'pax', 'Peaxi162Scf00371g00316' => 'pax', 'Peaxi162Scf00434g00033' => 'pax', 'Peaxi162Scf00519g00002' => 'pax', 'Peaxi162Scf00527g00077' => 'pax', 'Peaxi162Scf00528g00122' => 'pax', 'Peaxi162Scf00558g00118' => 'pax', 'Peaxi162Scf00565g00829' => 'pax', 'Peaxi162Scf00566g00069' => 'pax', 'Peaxi162Scf00582g00016' => 'pax', 'Peaxi162Scf00582g00019' => 'pax', 'Peaxi162Scf00586g00013' => 'pax', 'Peaxi162Scf00620g00218' => 'pax', 'Peaxi162Scf00677g10012' => 'pax', 'Peaxi162Scf00752g00055' => 'pax', 'Peaxi162Scf00752g00068' => 'pax', 'Peaxi162Scf00752g00610' => 'pax', 'Peaxi162Scf00795g00069' => 'pax', 'Peaxi162Scf00809g00418' => 'pax', 'Peaxi162Scf00842g00011' => 'pax', 'Peaxi162Scf00951g00019' => 'pax', 'Peaxi162Scf01253g00018' => 'pax', 'Peaxi162Scf01253g00023' => 'pax', 'Peaxi162Scf01464g00010' => 'pax', 'Peaxi162Scf03993g00002' => 'pax', 'Peaxi162Scf07758g00001' => 'pax', 'PGSC0003DMG400001258' => 'stu', 'PGSC0003DMG400001679' => 'stu', 'PGSC0003DMG400003268' => 'stu', 'PGSC0003DMG400006719' => 'stu', 'PGSC0003DMG400006953' => 'stu', 'PGSC0003DMG400009893' => 'stu', 'PGSC0003DMG400013166' => 'stu', 'PGSC0003DMG400013712' => 'stu', 'PGSC0003DMG400015528' => 'stu', 'PGSC0003DMG400017531' => 'stu', 'PGSC0003DMG400017712' => 'stu', 'PGSC0003DMG400020377' => 'stu', 'PGSC0003DMG400020694' => 'stu', 'PGSC0003DMG400021293' => 'stu', 'PGSC0003DMG400021840' => 'stu', 'PGSC0003DMG400021867' => 'stu', 'PGSC0003DMG400022355' => 'stu', 'PGSC0003DMG400023096' => 'stu', 'PGSC0003DMG400024382' => 'stu', 'PGSC0003DMG400024760' => 'stu', 'PGSC0003DMG400025489' => 'stu', 'PGSC0003DMG400026495' => 'stu', 'PGSC0003DMG400027837' => 'stu', 'PGSC0003DMG400029822' => 'stu', 'PGSC0003DMG400029865' => 'stu', 'PGSC0003DMG400030801' => 'stu', 'PGSC0003DMG400033169' => 'stu', 'PGSC0003DMG400033635' => 'stu', 'PGSC0003DMG400041066' => 'stu', 'PGSC0003DMG400044414' => 'stu', 'PGSC0003DMG401008657' => 'stu', 'PGSC0003DMG401017944' => 'stu', 'PGSC0003DMG401021841' => 'stu', 'PGSC0003DMG401024222' => 'stu', 'PGSC0003DMG402005640' => 'stu', 'PGSC0003DMG402010367' => 'stu', 'Solyc01g057165.1' => 'sly', 'Solyc01g057390.2' => 'sly', 'Solyc01g066612.1' => 'sly', 'Solyc01g066616.1' => 'sly', 'Solyc02g005070.3' => 'sly', 'Solyc02g038640.3' => 'sly', 'Solyc02g050265.1' => 'sly', 'Solyc03g044833.1' => 'sly', 'Solyc03g150112.1' => 'sly', 'Solyc04g025320.2' => 'sly', 'Solyc05g017795.1' => 'sly', 'Solyc05g017797.1' => 'sly', 'Solyc05g041780.1' => 'sly', 'Solyc07g014750.1' => 'sly', 'Solyc07g021465.1' => 'sly', 'Solyc08g042070.2' => 'sly', 'Solyc09g015140.2' => 'sly', 'Solyc11g013730.3' => 'sly', 'Solyc11g150110.1' => 'sly', 'Solyc12g042110.3' => 'sly', 'Sopen01g022130' => 'spe', 'Sopen02g008580' => 'spe', 'Sopen03g007870' => 'spe', 'Sopen03g024550' => 'spe', 'Sopen04g013910' => 'spe', 'Sopen04g022620' => 'spe', 'Sopen05g027490' => 'spe', 'Sopen06g019020' => 'spe', 'Sopen07g022080' => 'spe', 'Sopen08g012520' => 'spe', 'Sopen09g011030' => 'spe', 'Sopen09g021920' => 'spe', 'Sopen10g004570' => 'spe', 'Sopen10g020420' => 'spe', 'Sopen11g020370' => 'spe', 'Sopen12g016550' => 'spe', 'Sopen12g021190' => 'spe' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002261' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002261' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002261' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002261' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002261', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '298', 'num_species' => '7' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'CAN.G1003.1' => 'can', 'CAN.G129.27' => 'can', 'CAN.G135.43' => 'can', 'CAN.G15.23' => 'can', 'CAN.G165.11' => 'can', 'CAN.G165.12' => 'can', 'CAN.G170.120' => 'can', 'CAN.G205.2' => 'can', 'CAN.G217.13' => 'can', 'CAN.G217.14' => 'can', 'CAN.G22.6' => 'can', 'CAN.G223.2' => 'can', 'CAN.G255.16' => 'can', 'CAN.G280.21' => 'can', 'CAN.G315.7' => 'can', 'CAN.G339.20' => 'can', 'CAN.G352.57' => 'can', 'CAN.G352.58' => 'can', 'CAN.G446.10' => 'can', 'CAN.G499.5' => 'can', 'CAN.G5.31' => 'can', 'CAN.G619.1' => 'can', 'CAN.G765.17' => 'can', 'CAN.G784.3' => 'can', 'CAN.G864.2' => 'can', 'CAN.G933.9' => 'can', 'CSS0028456' => 'camsi', 'Nitab4.5_0000015g0360' => 'nta', 'Nitab4.5_0000062g0020' => 'nta', 'Nitab4.5_0000091g0340' => 'nta', 'Nitab4.5_0000091g0350' => 'nta', 'Nitab4.5_0000091g0370' => 'nta', 'Nitab4.5_0000105g0350' => 'nta', 'Nitab4.5_0000113g0330' => 'nta', 'Nitab4.5_0000113g0340' => 'nta', 'Nitab4.5_0000119g0230' => 'nta', 'Nitab4.5_0000230g0090' => 'nta', 'Nitab4.5_0000230g0260' => 'nta', 'Nitab4.5_0000231g0450' => 'nta', 'Nitab4.5_0000250g0180' => 'nta', 'Nitab4.5_0000317g0010' => 'nta', 'Nitab4.5_0000336g0030' => 'nta', 'Nitab4.5_0000402g0090' => 'nta', 'Nitab4.5_0000402g0100' => 'nta', 'Nitab4.5_0000443g0120' => 'nta', 'Nitab4.5_0000517g0100' => 'nta', 'Nitab4.5_0000570g0150' => 'nta', 'Nitab4.5_0000570g0170' => 'nta', 'Nitab4.5_0000578g0030' => 'nta', 'Nitab4.5_0000600g0030' => 'nta', 'Nitab4.5_0000600g0040' => 'nta', 'Nitab4.5_0000605g0050' => 'nta', 'Nitab4.5_0000616g0040' => 'nta', 'Nitab4.5_0000659g0060' => 'nta', 'Nitab4.5_0000659g0070' => 'nta', 'Nitab4.5_0000754g0300' => 'nta', 'Nitab4.5_0000842g0080' => 'nta', 'Nitab4.5_0000877g0030' => 'nta', 'Nitab4.5_0000890g0030' => 'nta', 'Nitab4.5_0000890g0060' => 'nta', 'Nitab4.5_0000901g0030' => 'nta', 'Nitab4.5_0000941g0020' => 'nta', 'Nitab4.5_0000958g0040' => 'nta', 'Nitab4.5_0000958g0050' => 'nta', 'Nitab4.5_0001057g0080' => 'nta', 'Nitab4.5_0001280g0040' => 'nta', 'Nitab4.5_0001372g0040' => 'nta', 'Nitab4.5_0001504g0150' => 'nta', 'Nitab4.5_0001522g0080' => 'nta', 'Nitab4.5_0001568g0120' => 'nta', 'Nitab4.5_0001604g0090' => 'nta', 'Nitab4.5_0001659g0090' => 'nta', 'Nitab4.5_0001709g0100' => 'nta', 'Nitab4.5_0001755g0030' => 'nta', 'Nitab4.5_0001879g0040' => 'nta', 'Nitab4.5_0001879g0060' => 'nta', 'Nitab4.5_0001899g0050' => 'nta', 'Nitab4.5_0002052g0140' => 'nta', 'Nitab4.5_0002141g0030' => 'nta', 'Nitab4.5_0002219g0070' => 'nta', 'Nitab4.5_0002219g0080' => 'nta', 'Nitab4.5_0002221g0080' => 'nta', 'Nitab4.5_0002221g0090' => 'nta', 'Nitab4.5_0002374g0030' => 'nta', 'Nitab4.5_0002427g0030' => 'nta', 'Nitab4.5_0002569g0120' => 'nta', 'Nitab4.5_0002588g0010' => 'nta', 'Nitab4.5_0002591g0030' => 'nta', 'Nitab4.5_0002591g0060' => 'nta', 'Nitab4.5_0002625g0050' => 'nta', 'Nitab4.5_0002628g0030' => 'nta', 'Nitab4.5_0002668g0050' => 'nta', 'Nitab4.5_0002800g0010' => 'nta', 'Nitab4.5_0002942g0030' => 'nta', 'Nitab4.5_0002942g0050' => 'nta', 'Nitab4.5_0002942g0070' => 'nta', 'Nitab4.5_0003011g0030' => 'nta', 'Nitab4.5_0003011g0040' => 'nta', 'Nitab4.5_0003011g0050' => 'nta', 'Nitab4.5_0003152g0090' => 'nta', 'Nitab4.5_0003285g0010' => 'nta', 'Nitab4.5_0003349g0050' => 'nta', 'Nitab4.5_0003349g0060' => 'nta', 'Nitab4.5_0003524g0030' => 'nta', 'Nitab4.5_0003673g0010' => 'nta', 'Nitab4.5_0003721g0050' => 'nta', 'Nitab4.5_0003829g0010' => 'nta', 'Nitab4.5_0003861g0050' => 'nta', 'Nitab4.5_0004225g0020' => 'nta', 'Nitab4.5_0004247g0010' => 'nta', 'Nitab4.5_0004260g0010' => 'nta', 'Nitab4.5_0004316g0010' => 'nta', 'Nitab4.5_0004688g0040' => 'nta', 'Nitab4.5_0004688g0090' => 'nta', 'Nitab4.5_0004746g0010' => 'nta', 'Nitab4.5_0004971g0010' => 'nta', 'Nitab4.5_0005023g0020' => 'nta', 'Nitab4.5_0005054g0010' => 'nta', 'Nitab4.5_0005054g0030' => 'nta', 'Nitab4.5_0005054g0050' => 'nta', 'Nitab4.5_0005104g0040' => 'nta', 'Nitab4.5_0005200g0070' => 'nta', 'Nitab4.5_0005423g0060' => 'nta', 'Nitab4.5_0005624g0030' => 'nta', 'Nitab4.5_0005624g0050' => 'nta', 'Nitab4.5_0005642g0030' => 'nta', 'Nitab4.5_0005791g0040' => 'nta', 'Nitab4.5_0005917g0010' => 'nta', 'Nitab4.5_0006241g0060' => 'nta', 'Nitab4.5_0006526g0040' => 'nta', 'Nitab4.5_0006660g0010' => 'nta', 'Nitab4.5_0006835g0020' => 'nta', 'Nitab4.5_0006911g0010' => 'nta', 'Nitab4.5_0006911g0020' => 'nta', 'Nitab4.5_0007024g0040' => 'nta', 'Nitab4.5_0007046g0020' => 'nta', 'Nitab4.5_0007441g0010' => 'nta', 'Nitab4.5_0007866g0010' => 'nta', 'Nitab4.5_0007866g0020' => 'nta', 'Nitab4.5_0007866g0030' => 'nta', 'Nitab4.5_0007884g0010' => 'nta', 'Nitab4.5_0008074g0040' => 'nta', 'Nitab4.5_0008844g0010' => 'nta', 'Nitab4.5_0009021g0020' => 'nta', 'Nitab4.5_0009094g0010' => 'nta', 'Nitab4.5_0009143g0010' => 'nta', 'Nitab4.5_0009143g0020' => 'nta', 'Nitab4.5_0009613g0030' => 'nta', 'Nitab4.5_0009745g0010' => 'nta', 'Nitab4.5_0009754g0030' => 'nta', 'Nitab4.5_0009848g0010' => 'nta', 'Nitab4.5_0009868g0050' => 'nta', 'Nitab4.5_0009878g0030' => 'nta', 'Nitab4.5_0009976g0010' => 'nta', 'Nitab4.5_0010073g0030' => 'nta', 'Nitab4.5_0011225g0010' => 'nta', 'Nitab4.5_0011520g0010' => 'nta', 'Nitab4.5_0011586g0010' => 'nta', 'Nitab4.5_0011589g0010' => 'nta', 'Nitab4.5_0011868g0010' => 'nta', 'Nitab4.5_0012306g0030' => 'nta', 'Nitab4.5_0012627g0010' => 'nta', 'Nitab4.5_0012917g0020' => 'nta', 'Nitab4.5_0013103g0010' => 'nta', 'Nitab4.5_0013103g0020' => 'nta', 'Nitab4.5_0013711g0010' => 'nta', 'Nitab4.5_0014025g0010' => 'nta', 'Nitab4.5_0014440g0010' => 'nta', 'Nitab4.5_0016697g0010' => 'nta', 'Nitab4.5_0019209g0010' => 'nta', 'Nitab4.5_0019514g0010' => 'nta', 'Nitab4.5_0019635g0010' => 'nta', 'Nitab4.5_0022906g0010' => 'nta', 'Nitab4.5_0028843g0010' => 'nta', 'Peaxi162Scf00007g01337' => 'pax', 'Peaxi162Scf00020g01022' => 'pax', 'Peaxi162Scf00020g01029' => 'pax', 'Peaxi162Scf00021g02527' => 'pax', 'Peaxi162Scf00028g00075' => 'pax', 'Peaxi162Scf00033g00212' => 'pax', 'Peaxi162Scf00033g00215' => 'pax', 'Peaxi162Scf00044g00014' => 'pax', 'Peaxi162Scf00047g00443' => 'pax', 'Peaxi162Scf00098g01534' => 'pax', 'Peaxi162Scf00098g01535' => 'pax', 'Peaxi162Scf00111g00518' => 'pax', 'Peaxi162Scf00131g00001' => 'pax', 'Peaxi162Scf00158g00318' => 'pax', 'Peaxi162Scf00164g00088' => 'pax', 'Peaxi162Scf00175g00342' => 'pax', 'Peaxi162Scf00176g00025' => 'pax', 'Peaxi162Scf00206g00046' => 'pax', 'Peaxi162Scf00211g00164' => 'pax', 'Peaxi162Scf00224g00009' => 'pax', 'Peaxi162Scf00285g00007' => 'pax', 'Peaxi162Scf00308g00076' => 'pax', 'Peaxi162Scf00345g00126' => 'pax', 'Peaxi162Scf00357g00621' => 'pax', 'Peaxi162Scf00363g00012' => 'pax', 'Peaxi162Scf00371g00312' => 'pax', 'Peaxi162Scf00371g00316' => 'pax', 'Peaxi162Scf00434g00033' => 'pax', 'Peaxi162Scf00519g00002' => 'pax', 'Peaxi162Scf00527g00077' => 'pax', 'Peaxi162Scf00528g00122' => 'pax', 'Peaxi162Scf00558g00118' => 'pax', 'Peaxi162Scf00565g00829' => 'pax', 'Peaxi162Scf00566g00069' => 'pax', 'Peaxi162Scf00582g00016' => 'pax', 'Peaxi162Scf00582g00019' => 'pax', 'Peaxi162Scf00586g00013' => 'pax', 'Peaxi162Scf00620g00218' => 'pax', 'Peaxi162Scf00677g10012' => 'pax', 'Peaxi162Scf00752g00055' => 'pax', 'Peaxi162Scf00752g00068' => 'pax', 'Peaxi162Scf00752g00610' => 'pax', 'Peaxi162Scf00795g00069' => 'pax', 'Peaxi162Scf00809g00418' => 'pax', 'Peaxi162Scf00842g00011' => 'pax', 'Peaxi162Scf00951g00019' => 'pax', 'Peaxi162Scf01253g00018' => 'pax', 'Peaxi162Scf01253g00023' => 'pax', 'Peaxi162Scf01464g00010' => 'pax', 'Peaxi162Scf03993g00002' => 'pax', 'Peaxi162Scf07758g00001' => 'pax', 'PGSC0003DMG400001258' => 'stu', 'PGSC0003DMG400001679' => 'stu', 'PGSC0003DMG400003268' => 'stu', 'PGSC0003DMG400006719' => 'stu', 'PGSC0003DMG400006953' => 'stu', 'PGSC0003DMG400009893' => 'stu', 'PGSC0003DMG400013166' => 'stu', 'PGSC0003DMG400013712' => 'stu', 'PGSC0003DMG400015528' => 'stu', 'PGSC0003DMG400017531' => 'stu', 'PGSC0003DMG400017712' => 'stu', 'PGSC0003DMG400020377' => 'stu', 'PGSC0003DMG400020694' => 'stu', 'PGSC0003DMG400021293' => 'stu', 'PGSC0003DMG400021840' => 'stu', 'PGSC0003DMG400021867' => 'stu', 'PGSC0003DMG400022355' => 'stu', 'PGSC0003DMG400023096' => 'stu', 'PGSC0003DMG400024382' => 'stu', 'PGSC0003DMG400024760' => 'stu', 'PGSC0003DMG400025489' => 'stu', 'PGSC0003DMG400026495' => 'stu', 'PGSC0003DMG400027837' => 'stu', 'PGSC0003DMG400029822' => 'stu', 'PGSC0003DMG400029865' => 'stu', 'PGSC0003DMG400030801' => 'stu', 'PGSC0003DMG400033169' => 'stu', 'PGSC0003DMG400033635' => 'stu', 'PGSC0003DMG400041066' => 'stu', 'PGSC0003DMG400044414' => 'stu', 'PGSC0003DMG401008657' => 'stu', 'PGSC0003DMG401017944' => 'stu', 'PGSC0003DMG401021841' => 'stu', 'PGSC0003DMG401024222' => 'stu', 'PGSC0003DMG402005640' => 'stu', 'PGSC0003DMG402010367' => 'stu', 'Solyc01g057165.1' => 'sly', 'Solyc01g057390.2' => 'sly', 'Solyc01g066612.1' => 'sly', 'Solyc01g066616.1' => 'sly', 'Solyc02g005070.3' => 'sly', 'Solyc02g038640.3' => 'sly', 'Solyc02g050265.1' => 'sly', 'Solyc03g044833.1' => 'sly', 'Solyc03g150112.1' => 'sly', 'Solyc04g025320.2' => 'sly', 'Solyc05g017795.1' => 'sly', 'Solyc05g017797.1' => 'sly', 'Solyc05g041780.1' => 'sly', 'Solyc07g014750.1' => 'sly', 'Solyc07g021465.1' => 'sly', 'Solyc08g042070.2' => 'sly', 'Solyc09g015140.2' => 'sly', 'Solyc11g013730.3' => 'sly', 'Solyc11g150110.1' => 'sly', 'Solyc12g042110.3' => 'sly', 'Sopen01g022130' => 'spe', 'Sopen02g008580' => 'spe', 'Sopen03g007870' => 'spe', 'Sopen03g024550' => 'spe', 'Sopen04g013910' => 'spe', 'Sopen04g022620' => 'spe', 'Sopen05g027490' => 'spe', 'Sopen06g019020' => 'spe', 'Sopen07g022080' => 'spe', 'Sopen08g012520' => 'spe', 'Sopen09g011030' => 'spe', 'Sopen09g021920' => 'spe', 'Sopen10g004570' => 'spe', 'Sopen10g020420' => 'spe', 'Sopen11g020370' => 'spe', 'Sopen12g016550' => 'spe', 'Sopen12g021190' => 'spe' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002261', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002261' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002261', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '298', 'num_species' => '7' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002261' ) ), 'genes' => array( 'CAN.G1003.1' => 'can', 'CAN.G129.27' => 'can', 'CAN.G135.43' => 'can', 'CAN.G15.23' => 'can', 'CAN.G165.11' => 'can', 'CAN.G165.12' => 'can', 'CAN.G170.120' => 'can', 'CAN.G205.2' => 'can', 'CAN.G217.13' => 'can', 'CAN.G217.14' => 'can', 'CAN.G22.6' => 'can', 'CAN.G223.2' => 'can', 'CAN.G255.16' => 'can', 'CAN.G280.21' => 'can', 'CAN.G315.7' => 'can', 'CAN.G339.20' => 'can', 'CAN.G352.57' => 'can', 'CAN.G352.58' => 'can', 'CAN.G446.10' => 'can', 'CAN.G499.5' => 'can', 'CAN.G5.31' => 'can', 'CAN.G619.1' => 'can', 'CAN.G765.17' => 'can', 'CAN.G784.3' => 'can', 'CAN.G864.2' => 'can', 'CAN.G933.9' => 'can', 'CSS0028456' => 'camsi', 'Nitab4.5_0000015g0360' => 'nta', 'Nitab4.5_0000062g0020' => 'nta', 'Nitab4.5_0000091g0340' => 'nta', 'Nitab4.5_0000091g0350' => 'nta', 'Nitab4.5_0000091g0370' => 'nta', 'Nitab4.5_0000105g0350' => 'nta', 'Nitab4.5_0000113g0330' => 'nta', 'Nitab4.5_0000113g0340' => 'nta', 'Nitab4.5_0000119g0230' => 'nta', 'Nitab4.5_0000230g0090' => 'nta', 'Nitab4.5_0000230g0260' => 'nta', 'Nitab4.5_0000231g0450' => 'nta', 'Nitab4.5_0000250g0180' => 'nta', 'Nitab4.5_0000317g0010' => 'nta', 'Nitab4.5_0000336g0030' => 'nta', 'Nitab4.5_0000402g0090' => 'nta', 'Nitab4.5_0000402g0100' => 'nta', 'Nitab4.5_0000443g0120' => 'nta', 'Nitab4.5_0000517g0100' => 'nta', 'Nitab4.5_0000570g0150' => 'nta', 'Nitab4.5_0000570g0170' => 'nta', 'Nitab4.5_0000578g0030' => 'nta', 'Nitab4.5_0000600g0030' => 'nta', 'Nitab4.5_0000600g0040' => 'nta', 'Nitab4.5_0000605g0050' => 'nta', 'Nitab4.5_0000616g0040' => 'nta', 'Nitab4.5_0000659g0060' => 'nta', 'Nitab4.5_0000659g0070' => 'nta', 'Nitab4.5_0000754g0300' => 'nta', 'Nitab4.5_0000842g0080' => 'nta', 'Nitab4.5_0000877g0030' => 'nta', 'Nitab4.5_0000890g0030' => 'nta', 'Nitab4.5_0000890g0060' => 'nta', 'Nitab4.5_0000901g0030' => 'nta', 'Nitab4.5_0000941g0020' => 'nta', 'Nitab4.5_0000958g0040' => 'nta', 'Nitab4.5_0000958g0050' => 'nta', 'Nitab4.5_0001057g0080' => 'nta', 'Nitab4.5_0001280g0040' => 'nta', 'Nitab4.5_0001372g0040' => 'nta', 'Nitab4.5_0001504g0150' => 'nta', 'Nitab4.5_0001522g0080' => 'nta', 'Nitab4.5_0001568g0120' => 'nta', 'Nitab4.5_0001604g0090' => 'nta', 'Nitab4.5_0001659g0090' => 'nta', 'Nitab4.5_0001709g0100' => 'nta', 'Nitab4.5_0001755g0030' => 'nta', 'Nitab4.5_0001879g0040' => 'nta', 'Nitab4.5_0001879g0060' => 'nta', 'Nitab4.5_0001899g0050' => 'nta', 'Nitab4.5_0002052g0140' => 'nta', 'Nitab4.5_0002141g0030' => 'nta', 'Nitab4.5_0002219g0070' => 'nta', 'Nitab4.5_0002219g0080' => 'nta', 'Nitab4.5_0002221g0080' => 'nta', 'Nitab4.5_0002221g0090' => 'nta', 'Nitab4.5_0002374g0030' => 'nta', 'Nitab4.5_0002427g0030' => 'nta', 'Nitab4.5_0002569g0120' => 'nta', 'Nitab4.5_0002588g0010' => 'nta', 'Nitab4.5_0002591g0030' => 'nta', 'Nitab4.5_0002591g0060' => 'nta', 'Nitab4.5_0002625g0050' => 'nta', 'Nitab4.5_0002628g0030' => 'nta', 'Nitab4.5_0002668g0050' => 'nta', 'Nitab4.5_0002800g0010' => 'nta', 'Nitab4.5_0002942g0030' => 'nta', 'Nitab4.5_0002942g0050' => 'nta', 'Nitab4.5_0002942g0070' => 'nta', 'Nitab4.5_0003011g0030' => 'nta', 'Nitab4.5_0003011g0040' => 'nta', 'Nitab4.5_0003011g0050' => 'nta', 'Nitab4.5_0003152g0090' => 'nta', 'Nitab4.5_0003285g0010' => 'nta', 'Nitab4.5_0003349g0050' => 'nta', 'Nitab4.5_0003349g0060' => 'nta', 'Nitab4.5_0003524g0030' => 'nta', 'Nitab4.5_0003673g0010' => 'nta', 'Nitab4.5_0003721g0050' => 'nta', 'Nitab4.5_0003829g0010' => 'nta', 'Nitab4.5_0003861g0050' => 'nta', 'Nitab4.5_0004225g0020' => 'nta', 'Nitab4.5_0004247g0010' => 'nta', 'Nitab4.5_0004260g0010' => 'nta', 'Nitab4.5_0004316g0010' => 'nta', 'Nitab4.5_0004688g0040' => 'nta', 'Nitab4.5_0004688g0090' => 'nta', 'Nitab4.5_0004746g0010' => 'nta', 'Nitab4.5_0004971g0010' => 'nta', 'Nitab4.5_0005023g0020' => 'nta', 'Nitab4.5_0005054g0010' => 'nta', 'Nitab4.5_0005054g0030' => 'nta', 'Nitab4.5_0005054g0050' => 'nta', 'Nitab4.5_0005104g0040' => 'nta', 'Nitab4.5_0005200g0070' => 'nta', 'Nitab4.5_0005423g0060' => 'nta', 'Nitab4.5_0005624g0030' => 'nta', 'Nitab4.5_0005624g0050' => 'nta', 'Nitab4.5_0005642g0030' => 'nta', 'Nitab4.5_0005791g0040' => 'nta', 'Nitab4.5_0005917g0010' => 'nta', 'Nitab4.5_0006241g0060' => 'nta', 'Nitab4.5_0006526g0040' => 'nta', 'Nitab4.5_0006660g0010' => 'nta', 'Nitab4.5_0006835g0020' => 'nta', 'Nitab4.5_0006911g0010' => 'nta', 'Nitab4.5_0006911g0020' => 'nta', 'Nitab4.5_0007024g0040' => 'nta', 'Nitab4.5_0007046g0020' => 'nta', 'Nitab4.5_0007441g0010' => 'nta', 'Nitab4.5_0007866g0010' => 'nta', 'Nitab4.5_0007866g0020' => 'nta', 'Nitab4.5_0007866g0030' => 'nta', 'Nitab4.5_0007884g0010' => 'nta', 'Nitab4.5_0008074g0040' => 'nta', 'Nitab4.5_0008844g0010' => 'nta', 'Nitab4.5_0009021g0020' => 'nta', 'Nitab4.5_0009094g0010' => 'nta', 'Nitab4.5_0009143g0010' => 'nta', 'Nitab4.5_0009143g0020' => 'nta', 'Nitab4.5_0009613g0030' => 'nta', 'Nitab4.5_0009745g0010' => 'nta', 'Nitab4.5_0009754g0030' => 'nta', 'Nitab4.5_0009848g0010' => 'nta', 'Nitab4.5_0009868g0050' => 'nta', 'Nitab4.5_0009878g0030' => 'nta', 'Nitab4.5_0009976g0010' => 'nta', 'Nitab4.5_0010073g0030' => 'nta', 'Nitab4.5_0011225g0010' => 'nta', 'Nitab4.5_0011520g0010' => 'nta', 'Nitab4.5_0011586g0010' => 'nta', 'Nitab4.5_0011589g0010' => 'nta', 'Nitab4.5_0011868g0010' => 'nta', 'Nitab4.5_0012306g0030' => 'nta', 'Nitab4.5_0012627g0010' => 'nta', 'Nitab4.5_0012917g0020' => 'nta', 'Nitab4.5_0013103g0010' => 'nta', 'Nitab4.5_0013103g0020' => 'nta', 'Nitab4.5_0013711g0010' => 'nta', 'Nitab4.5_0014025g0010' => 'nta', 'Nitab4.5_0014440g0010' => 'nta', 'Nitab4.5_0016697g0010' => 'nta', 'Nitab4.5_0019209g0010' => 'nta', 'Nitab4.5_0019514g0010' => 'nta', 'Nitab4.5_0019635g0010' => 'nta', 'Nitab4.5_0022906g0010' => 'nta', 'Nitab4.5_0028843g0010' => 'nta', 'Peaxi162Scf00007g01337' => 'pax', 'Peaxi162Scf00020g01022' => 'pax', 'Peaxi162Scf00020g01029' => 'pax', 'Peaxi162Scf00021g02527' => 'pax', 'Peaxi162Scf00028g00075' => 'pax', 'Peaxi162Scf00033g00212' => 'pax', 'Peaxi162Scf00033g00215' => 'pax', 'Peaxi162Scf00044g00014' => 'pax', 'Peaxi162Scf00047g00443' => 'pax', 'Peaxi162Scf00098g01534' => 'pax', 'Peaxi162Scf00098g01535' => 'pax', 'Peaxi162Scf00111g00518' => 'pax', 'Peaxi162Scf00131g00001' => 'pax', 'Peaxi162Scf00158g00318' => 'pax', 'Peaxi162Scf00164g00088' => 'pax', 'Peaxi162Scf00175g00342' => 'pax', 'Peaxi162Scf00176g00025' => 'pax', 'Peaxi162Scf00206g00046' => 'pax', 'Peaxi162Scf00211g00164' => 'pax', 'Peaxi162Scf00224g00009' => 'pax', 'Peaxi162Scf00285g00007' => 'pax', 'Peaxi162Scf00308g00076' => 'pax', 'Peaxi162Scf00345g00126' => 'pax', 'Peaxi162Scf00357g00621' => 'pax', 'Peaxi162Scf00363g00012' => 'pax', 'Peaxi162Scf00371g00312' => 'pax', 'Peaxi162Scf00371g00316' => 'pax', 'Peaxi162Scf00434g00033' => 'pax', 'Peaxi162Scf00519g00002' => 'pax', 'Peaxi162Scf00527g00077' => 'pax', 'Peaxi162Scf00528g00122' => 'pax', 'Peaxi162Scf00558g00118' => 'pax', 'Peaxi162Scf00565g00829' => 'pax', 'Peaxi162Scf00566g00069' => 'pax', 'Peaxi162Scf00582g00016' => 'pax', 'Peaxi162Scf00582g00019' => 'pax', 'Peaxi162Scf00586g00013' => 'pax', 'Peaxi162Scf00620g00218' => 'pax', 'Peaxi162Scf00677g10012' => 'pax', 'Peaxi162Scf00752g00055' => 'pax', 'Peaxi162Scf00752g00068' => 'pax', 'Peaxi162Scf00752g00610' => 'pax', 'Peaxi162Scf00795g00069' => 'pax', 'Peaxi162Scf00809g00418' => 'pax', 'Peaxi162Scf00842g00011' => 'pax', 'Peaxi162Scf00951g00019' => 'pax', 'Peaxi162Scf01253g00018' => 'pax', 'Peaxi162Scf01253g00023' => 'pax', 'Peaxi162Scf01464g00010' => 'pax', 'Peaxi162Scf03993g00002' => 'pax', 'Peaxi162Scf07758g00001' => 'pax', 'PGSC0003DMG400001258' => 'stu', 'PGSC0003DMG400001679' => 'stu', 'PGSC0003DMG400003268' => 'stu', 'PGSC0003DMG400006719' => 'stu', 'PGSC0003DMG400006953' => 'stu', 'PGSC0003DMG400009893' => 'stu', 'PGSC0003DMG400013166' => 'stu', 'PGSC0003DMG400013712' => 'stu', 'PGSC0003DMG400015528' => 'stu', 'PGSC0003DMG400017531' => 'stu', 'PGSC0003DMG400017712' => 'stu', 'PGSC0003DMG400020377' => 'stu', 'PGSC0003DMG400020694' => 'stu', 'PGSC0003DMG400021293' => 'stu', 'PGSC0003DMG400021840' => 'stu', 'PGSC0003DMG400021867' => 'stu', 'PGSC0003DMG400022355' => 'stu', 'PGSC0003DMG400023096' => 'stu', 'PGSC0003DMG400024382' => 'stu', 'PGSC0003DMG400024760' => 'stu', 'PGSC0003DMG400025489' => 'stu', 'PGSC0003DMG400026495' => 'stu', 'PGSC0003DMG400027837' => 'stu', 'PGSC0003DMG400029822' => 'stu', 'PGSC0003DMG400029865' => 'stu', 'PGSC0003DMG400030801' => 'stu', 'PGSC0003DMG400033169' => 'stu', 'PGSC0003DMG400033635' => 'stu', 'PGSC0003DMG400041066' => 'stu', 'PGSC0003DMG400044414' => 'stu', 'PGSC0003DMG401008657' => 'stu', 'PGSC0003DMG401017944' => 'stu', 'PGSC0003DMG401021841' => 'stu', 'PGSC0003DMG401024222' => 'stu', 'PGSC0003DMG402005640' => 'stu', 'PGSC0003DMG402010367' => 'stu', 'Solyc01g057165.1' => 'sly', 'Solyc01g057390.2' => 'sly', 'Solyc01g066612.1' => 'sly', 'Solyc01g066616.1' => 'sly', 'Solyc02g005070.3' => 'sly', 'Solyc02g038640.3' => 'sly', 'Solyc02g050265.1' => 'sly', 'Solyc03g044833.1' => 'sly', 'Solyc03g150112.1' => 'sly', 'Solyc04g025320.2' => 'sly', 'Solyc05g017795.1' => 'sly', 'Solyc05g017797.1' => 'sly', 'Solyc05g041780.1' => 'sly', 'Solyc07g014750.1' => 'sly', 'Solyc07g021465.1' => 'sly', 'Solyc08g042070.2' => 'sly', 'Solyc09g015140.2' => 'sly', 'Solyc11g013730.3' => 'sly', 'Solyc11g150110.1' => 'sly', 'Solyc12g042110.3' => 'sly', 'Sopen01g022130' => 'spe', 'Sopen02g008580' => 'spe', 'Sopen03g007870' => 'spe', 'Sopen03g024550' => 'spe', 'Sopen04g013910' => 'spe', 'Sopen04g022620' => 'spe', 'Sopen05g027490' => 'spe', 'Sopen06g019020' => 'spe', 'Sopen07g022080' => 'spe', 'Sopen08g012520' => 'spe', 'Sopen09g011030' => 'spe', 'Sopen09g021920' => 'spe', 'Sopen10g004570' => 'spe', 'Sopen10g020420' => 'spe', 'Sopen11g020370' => 'spe', 'Sopen12g016550' => 'spe', 'Sopen12g021190' => 'spe' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002261' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002261' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002261' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002261' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002261', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '298', 'num_species' => '7' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'CAN.G1003.1' => 'can', 'CAN.G129.27' => 'can', 'CAN.G135.43' => 'can', 'CAN.G15.23' => 'can', 'CAN.G165.11' => 'can', 'CAN.G165.12' => 'can', 'CAN.G170.120' => 'can', 'CAN.G205.2' => 'can', 'CAN.G217.13' => 'can', 'CAN.G217.14' => 'can', 'CAN.G22.6' => 'can', 'CAN.G223.2' => 'can', 'CAN.G255.16' => 'can', 'CAN.G280.21' => 'can', 'CAN.G315.7' => 'can', 'CAN.G339.20' => 'can', 'CAN.G352.57' => 'can', 'CAN.G352.58' => 'can', 'CAN.G446.10' => 'can', 'CAN.G499.5' => 'can', 'CAN.G5.31' => 'can', 'CAN.G619.1' => 'can', 'CAN.G765.17' => 'can', 'CAN.G784.3' => 'can', 'CAN.G864.2' => 'can', 'CAN.G933.9' => 'can', 'CSS0028456' => 'camsi', 'Nitab4.5_0000015g0360' => 'nta', 'Nitab4.5_0000062g0020' => 'nta', 'Nitab4.5_0000091g0340' => 'nta', 'Nitab4.5_0000091g0350' => 'nta', 'Nitab4.5_0000091g0370' => 'nta', 'Nitab4.5_0000105g0350' => 'nta', 'Nitab4.5_0000113g0330' => 'nta', 'Nitab4.5_0000113g0340' => 'nta', 'Nitab4.5_0000119g0230' => 'nta', 'Nitab4.5_0000230g0090' => 'nta', 'Nitab4.5_0000230g0260' => 'nta', 'Nitab4.5_0000231g0450' => 'nta', 'Nitab4.5_0000250g0180' => 'nta', 'Nitab4.5_0000317g0010' => 'nta', 'Nitab4.5_0000336g0030' => 'nta', 'Nitab4.5_0000402g0090' => 'nta', 'Nitab4.5_0000402g0100' => 'nta', 'Nitab4.5_0000443g0120' => 'nta', 'Nitab4.5_0000517g0100' => 'nta', 'Nitab4.5_0000570g0150' => 'nta', 'Nitab4.5_0000570g0170' => 'nta', 'Nitab4.5_0000578g0030' => 'nta', 'Nitab4.5_0000600g0030' => 'nta', 'Nitab4.5_0000600g0040' => 'nta', 'Nitab4.5_0000605g0050' => 'nta', 'Nitab4.5_0000616g0040' => 'nta', 'Nitab4.5_0000659g0060' => 'nta', 'Nitab4.5_0000659g0070' => 'nta', 'Nitab4.5_0000754g0300' => 'nta', 'Nitab4.5_0000842g0080' => 'nta', 'Nitab4.5_0000877g0030' => 'nta', 'Nitab4.5_0000890g0030' => 'nta', 'Nitab4.5_0000890g0060' => 'nta', 'Nitab4.5_0000901g0030' => 'nta', 'Nitab4.5_0000941g0020' => 'nta', 'Nitab4.5_0000958g0040' => 'nta', 'Nitab4.5_0000958g0050' => 'nta', 'Nitab4.5_0001057g0080' => 'nta', 'Nitab4.5_0001280g0040' => 'nta', 'Nitab4.5_0001372g0040' => 'nta', 'Nitab4.5_0001504g0150' => 'nta', 'Nitab4.5_0001522g0080' => 'nta', 'Nitab4.5_0001568g0120' => 'nta', 'Nitab4.5_0001604g0090' => 'nta', 'Nitab4.5_0001659g0090' => 'nta', 'Nitab4.5_0001709g0100' => 'nta', 'Nitab4.5_0001755g0030' => 'nta', 'Nitab4.5_0001879g0040' => 'nta', 'Nitab4.5_0001879g0060' => 'nta', 'Nitab4.5_0001899g0050' => 'nta', 'Nitab4.5_0002052g0140' => 'nta', 'Nitab4.5_0002141g0030' => 'nta', 'Nitab4.5_0002219g0070' => 'nta', 'Nitab4.5_0002219g0080' => 'nta', 'Nitab4.5_0002221g0080' => 'nta', 'Nitab4.5_0002221g0090' => 'nta', 'Nitab4.5_0002374g0030' => 'nta', 'Nitab4.5_0002427g0030' => 'nta', 'Nitab4.5_0002569g0120' => 'nta', 'Nitab4.5_0002588g0010' => 'nta', 'Nitab4.5_0002591g0030' => 'nta', 'Nitab4.5_0002591g0060' => 'nta', 'Nitab4.5_0002625g0050' => 'nta', 'Nitab4.5_0002628g0030' => 'nta', 'Nitab4.5_0002668g0050' => 'nta', 'Nitab4.5_0002800g0010' => 'nta', 'Nitab4.5_0002942g0030' => 'nta', 'Nitab4.5_0002942g0050' => 'nta', 'Nitab4.5_0002942g0070' => 'nta', 'Nitab4.5_0003011g0030' => 'nta', 'Nitab4.5_0003011g0040' => 'nta', 'Nitab4.5_0003011g0050' => 'nta', 'Nitab4.5_0003152g0090' => 'nta', 'Nitab4.5_0003285g0010' => 'nta', 'Nitab4.5_0003349g0050' => 'nta', 'Nitab4.5_0003349g0060' => 'nta', 'Nitab4.5_0003524g0030' => 'nta', 'Nitab4.5_0003673g0010' => 'nta', 'Nitab4.5_0003721g0050' => 'nta', 'Nitab4.5_0003829g0010' => 'nta', 'Nitab4.5_0003861g0050' => 'nta', 'Nitab4.5_0004225g0020' => 'nta', 'Nitab4.5_0004247g0010' => 'nta', 'Nitab4.5_0004260g0010' => 'nta', 'Nitab4.5_0004316g0010' => 'nta', 'Nitab4.5_0004688g0040' => 'nta', 'Nitab4.5_0004688g0090' => 'nta', 'Nitab4.5_0004746g0010' => 'nta', 'Nitab4.5_0004971g0010' => 'nta', 'Nitab4.5_0005023g0020' => 'nta', 'Nitab4.5_0005054g0010' => 'nta', 'Nitab4.5_0005054g0030' => 'nta', 'Nitab4.5_0005054g0050' => 'nta', 'Nitab4.5_0005104g0040' => 'nta', 'Nitab4.5_0005200g0070' => 'nta', 'Nitab4.5_0005423g0060' => 'nta', 'Nitab4.5_0005624g0030' => 'nta', 'Nitab4.5_0005624g0050' => 'nta', 'Nitab4.5_0005642g0030' => 'nta', 'Nitab4.5_0005791g0040' => 'nta', 'Nitab4.5_0005917g0010' => 'nta', 'Nitab4.5_0006241g0060' => 'nta', 'Nitab4.5_0006526g0040' => 'nta', 'Nitab4.5_0006660g0010' => 'nta', 'Nitab4.5_0006835g0020' => 'nta', 'Nitab4.5_0006911g0010' => 'nta', 'Nitab4.5_0006911g0020' => 'nta', 'Nitab4.5_0007024g0040' => 'nta', 'Nitab4.5_0007046g0020' => 'nta', 'Nitab4.5_0007441g0010' => 'nta', 'Nitab4.5_0007866g0010' => 'nta', 'Nitab4.5_0007866g0020' => 'nta', 'Nitab4.5_0007866g0030' => 'nta', 'Nitab4.5_0007884g0010' => 'nta', 'Nitab4.5_0008074g0040' => 'nta', 'Nitab4.5_0008844g0010' => 'nta', 'Nitab4.5_0009021g0020' => 'nta', 'Nitab4.5_0009094g0010' => 'nta', 'Nitab4.5_0009143g0010' => 'nta', 'Nitab4.5_0009143g0020' => 'nta', 'Nitab4.5_0009613g0030' => 'nta', 'Nitab4.5_0009745g0010' => 'nta', 'Nitab4.5_0009754g0030' => 'nta', 'Nitab4.5_0009848g0010' => 'nta', 'Nitab4.5_0009868g0050' => 'nta', 'Nitab4.5_0009878g0030' => 'nta', 'Nitab4.5_0009976g0010' => 'nta', 'Nitab4.5_0010073g0030' => 'nta', 'Nitab4.5_0011225g0010' => 'nta', 'Nitab4.5_0011520g0010' => 'nta', 'Nitab4.5_0011586g0010' => 'nta', 'Nitab4.5_0011589g0010' => 'nta', 'Nitab4.5_0011868g0010' => 'nta', 'Nitab4.5_0012306g0030' => 'nta', 'Nitab4.5_0012627g0010' => 'nta', 'Nitab4.5_0012917g0020' => 'nta', 'Nitab4.5_0013103g0010' => 'nta', 'Nitab4.5_0013103g0020' => 'nta', 'Nitab4.5_0013711g0010' => 'nta', 'Nitab4.5_0014025g0010' => 'nta', 'Nitab4.5_0014440g0010' => 'nta', 'Nitab4.5_0016697g0010' => 'nta', 'Nitab4.5_0019209g0010' => 'nta', 'Nitab4.5_0019514g0010' => 'nta', 'Nitab4.5_0019635g0010' => 'nta', 'Nitab4.5_0022906g0010' => 'nta', 'Nitab4.5_0028843g0010' => 'nta', 'Peaxi162Scf00007g01337' => 'pax', 'Peaxi162Scf00020g01022' => 'pax', 'Peaxi162Scf00020g01029' => 'pax', 'Peaxi162Scf00021g02527' => 'pax', 'Peaxi162Scf00028g00075' => 'pax', 'Peaxi162Scf00033g00212' => 'pax', 'Peaxi162Scf00033g00215' => 'pax', 'Peaxi162Scf00044g00014' => 'pax', 'Peaxi162Scf00047g00443' => 'pax', 'Peaxi162Scf00098g01534' => 'pax', 'Peaxi162Scf00098g01535' => 'pax', 'Peaxi162Scf00111g00518' => 'pax', 'Peaxi162Scf00131g00001' => 'pax', 'Peaxi162Scf00158g00318' => 'pax', 'Peaxi162Scf00164g00088' => 'pax', 'Peaxi162Scf00175g00342' => 'pax', 'Peaxi162Scf00176g00025' => 'pax', 'Peaxi162Scf00206g00046' => 'pax', 'Peaxi162Scf00211g00164' => 'pax', 'Peaxi162Scf00224g00009' => 'pax', 'Peaxi162Scf00285g00007' => 'pax', 'Peaxi162Scf00308g00076' => 'pax', 'Peaxi162Scf00345g00126' => 'pax', 'Peaxi162Scf00357g00621' => 'pax', 'Peaxi162Scf00363g00012' => 'pax', 'Peaxi162Scf00371g00312' => 'pax', 'Peaxi162Scf00371g00316' => 'pax', 'Peaxi162Scf00434g00033' => 'pax', 'Peaxi162Scf00519g00002' => 'pax', 'Peaxi162Scf00527g00077' => 'pax', 'Peaxi162Scf00528g00122' => 'pax', 'Peaxi162Scf00558g00118' => 'pax', 'Peaxi162Scf00565g00829' => 'pax', 'Peaxi162Scf00566g00069' => 'pax', 'Peaxi162Scf00582g00016' => 'pax', 'Peaxi162Scf00582g00019' => 'pax', 'Peaxi162Scf00586g00013' => 'pax', 'Peaxi162Scf00620g00218' => 'pax', 'Peaxi162Scf00677g10012' => 'pax', 'Peaxi162Scf00752g00055' => 'pax', 'Peaxi162Scf00752g00068' => 'pax', 'Peaxi162Scf00752g00610' => 'pax', 'Peaxi162Scf00795g00069' => 'pax', 'Peaxi162Scf00809g00418' => 'pax', 'Peaxi162Scf00842g00011' => 'pax', 'Peaxi162Scf00951g00019' => 'pax', 'Peaxi162Scf01253g00018' => 'pax', 'Peaxi162Scf01253g00023' => 'pax', 'Peaxi162Scf01464g00010' => 'pax', 'Peaxi162Scf03993g00002' => 'pax', 'Peaxi162Scf07758g00001' => 'pax', 'PGSC0003DMG400001258' => 'stu', 'PGSC0003DMG400001679' => 'stu', 'PGSC0003DMG400003268' => 'stu', 'PGSC0003DMG400006719' => 'stu', 'PGSC0003DMG400006953' => 'stu', 'PGSC0003DMG400009893' => 'stu', 'PGSC0003DMG400013166' => 'stu', 'PGSC0003DMG400013712' => 'stu', 'PGSC0003DMG400015528' => 'stu', 'PGSC0003DMG400017531' => 'stu', 'PGSC0003DMG400017712' => 'stu', 'PGSC0003DMG400020377' => 'stu', 'PGSC0003DMG400020694' => 'stu', 'PGSC0003DMG400021293' => 'stu', 'PGSC0003DMG400021840' => 'stu', 'PGSC0003DMG400021867' => 'stu', 'PGSC0003DMG400022355' => 'stu', 'PGSC0003DMG400023096' => 'stu', 'PGSC0003DMG400024382' => 'stu', 'PGSC0003DMG400024760' => 'stu', 'PGSC0003DMG400025489' => 'stu', 'PGSC0003DMG400026495' => 'stu', 'PGSC0003DMG400027837' => 'stu', 'PGSC0003DMG400029822' => 'stu', 'PGSC0003DMG400029865' => 'stu', 'PGSC0003DMG400030801' => 'stu', 'PGSC0003DMG400033169' => 'stu', 'PGSC0003DMG400033635' => 'stu', 'PGSC0003DMG400041066' => 'stu', 'PGSC0003DMG400044414' => 'stu', 'PGSC0003DMG401008657' => 'stu', 'PGSC0003DMG401017944' => 'stu', 'PGSC0003DMG401021841' => 'stu', 'PGSC0003DMG401024222' => 'stu', 'PGSC0003DMG402005640' => 'stu', 'PGSC0003DMG402010367' => 'stu', 'Solyc01g057165.1' => 'sly', 'Solyc01g057390.2' => 'sly', 'Solyc01g066612.1' => 'sly', 'Solyc01g066616.1' => 'sly', 'Solyc02g005070.3' => 'sly', 'Solyc02g038640.3' => 'sly', 'Solyc02g050265.1' => 'sly', 'Solyc03g044833.1' => 'sly', 'Solyc03g150112.1' => 'sly', 'Solyc04g025320.2' => 'sly', 'Solyc05g017795.1' => 'sly', 'Solyc05g017797.1' => 'sly', 'Solyc05g041780.1' => 'sly', 'Solyc07g014750.1' => 'sly', 'Solyc07g021465.1' => 'sly', 'Solyc08g042070.2' => 'sly', 'Solyc09g015140.2' => 'sly', 'Solyc11g013730.3' => 'sly', 'Solyc11g150110.1' => 'sly', 'Solyc12g042110.3' => 'sly', 'Sopen01g022130' => 'spe', 'Sopen02g008580' => 'spe', 'Sopen03g007870' => 'spe', 'Sopen03g024550' => 'spe', 'Sopen04g013910' => 'spe', 'Sopen04g022620' => 'spe', 'Sopen05g027490' => 'spe', 'Sopen06g019020' => 'spe', 'Sopen07g022080' => 'spe', 'Sopen08g012520' => 'spe', 'Sopen09g011030' => 'spe', 'Sopen09g021920' => 'spe', 'Sopen10g004570' => 'spe', 'Sopen10g020420' => 'spe', 'Sopen11g020370' => 'spe', 'Sopen12g016550' => 'spe', 'Sopen12g021190' => 'spe' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002261', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002261' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002261', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '298', 'num_species' => '7' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002261' ) ), 'genes' => array( 'CAN.G1003.1' => 'can', 'CAN.G129.27' => 'can', 'CAN.G135.43' => 'can', 'CAN.G15.23' => 'can', 'CAN.G165.11' => 'can', 'CAN.G165.12' => 'can', 'CAN.G170.120' => 'can', 'CAN.G205.2' => 'can', 'CAN.G217.13' => 'can', 'CAN.G217.14' => 'can', 'CAN.G22.6' => 'can', 'CAN.G223.2' => 'can', 'CAN.G255.16' => 'can', 'CAN.G280.21' => 'can', 'CAN.G315.7' => 'can', 'CAN.G339.20' => 'can', 'CAN.G352.57' => 'can', 'CAN.G352.58' => 'can', 'CAN.G446.10' => 'can', 'CAN.G499.5' => 'can', 'CAN.G5.31' => 'can', 'CAN.G619.1' => 'can', 'CAN.G765.17' => 'can', 'CAN.G784.3' => 'can', 'CAN.G864.2' => 'can', 'CAN.G933.9' => 'can', 'CSS0028456' => 'camsi', 'Nitab4.5_0000015g0360' => 'nta', 'Nitab4.5_0000062g0020' => 'nta', 'Nitab4.5_0000091g0340' => 'nta', 'Nitab4.5_0000091g0350' => 'nta', 'Nitab4.5_0000091g0370' => 'nta', 'Nitab4.5_0000105g0350' => 'nta', 'Nitab4.5_0000113g0330' => 'nta', 'Nitab4.5_0000113g0340' => 'nta', 'Nitab4.5_0000119g0230' => 'nta', 'Nitab4.5_0000230g0090' => 'nta', 'Nitab4.5_0000230g0260' => 'nta', 'Nitab4.5_0000231g0450' => 'nta', 'Nitab4.5_0000250g0180' => 'nta', 'Nitab4.5_0000317g0010' => 'nta', 'Nitab4.5_0000336g0030' => 'nta', 'Nitab4.5_0000402g0090' => 'nta', 'Nitab4.5_0000402g0100' => 'nta', 'Nitab4.5_0000443g0120' => 'nta', 'Nitab4.5_0000517g0100' => 'nta', 'Nitab4.5_0000570g0150' => 'nta', 'Nitab4.5_0000570g0170' => 'nta', 'Nitab4.5_0000578g0030' => 'nta', 'Nitab4.5_0000600g0030' => 'nta', 'Nitab4.5_0000600g0040' => 'nta', 'Nitab4.5_0000605g0050' => 'nta', 'Nitab4.5_0000616g0040' => 'nta', 'Nitab4.5_0000659g0060' => 'nta', 'Nitab4.5_0000659g0070' => 'nta', 'Nitab4.5_0000754g0300' => 'nta', 'Nitab4.5_0000842g0080' => 'nta', 'Nitab4.5_0000877g0030' => 'nta', 'Nitab4.5_0000890g0030' => 'nta', 'Nitab4.5_0000890g0060' => 'nta', 'Nitab4.5_0000901g0030' => 'nta', 'Nitab4.5_0000941g0020' => 'nta', 'Nitab4.5_0000958g0040' => 'nta', 'Nitab4.5_0000958g0050' => 'nta', 'Nitab4.5_0001057g0080' => 'nta', 'Nitab4.5_0001280g0040' => 'nta', 'Nitab4.5_0001372g0040' => 'nta', 'Nitab4.5_0001504g0150' => 'nta', 'Nitab4.5_0001522g0080' => 'nta', 'Nitab4.5_0001568g0120' => 'nta', 'Nitab4.5_0001604g0090' => 'nta', 'Nitab4.5_0001659g0090' => 'nta', 'Nitab4.5_0001709g0100' => 'nta', 'Nitab4.5_0001755g0030' => 'nta', 'Nitab4.5_0001879g0040' => 'nta', 'Nitab4.5_0001879g0060' => 'nta', 'Nitab4.5_0001899g0050' => 'nta', 'Nitab4.5_0002052g0140' => 'nta', 'Nitab4.5_0002141g0030' => 'nta', 'Nitab4.5_0002219g0070' => 'nta', 'Nitab4.5_0002219g0080' => 'nta', 'Nitab4.5_0002221g0080' => 'nta', 'Nitab4.5_0002221g0090' => 'nta', 'Nitab4.5_0002374g0030' => 'nta', 'Nitab4.5_0002427g0030' => 'nta', 'Nitab4.5_0002569g0120' => 'nta', 'Nitab4.5_0002588g0010' => 'nta', 'Nitab4.5_0002591g0030' => 'nta', 'Nitab4.5_0002591g0060' => 'nta', 'Nitab4.5_0002625g0050' => 'nta', 'Nitab4.5_0002628g0030' => 'nta', 'Nitab4.5_0002668g0050' => 'nta', 'Nitab4.5_0002800g0010' => 'nta', 'Nitab4.5_0002942g0030' => 'nta', 'Nitab4.5_0002942g0050' => 'nta', 'Nitab4.5_0002942g0070' => 'nta', 'Nitab4.5_0003011g0030' => 'nta', 'Nitab4.5_0003011g0040' => 'nta', 'Nitab4.5_0003011g0050' => 'nta', 'Nitab4.5_0003152g0090' => 'nta', 'Nitab4.5_0003285g0010' => 'nta', 'Nitab4.5_0003349g0050' => 'nta', 'Nitab4.5_0003349g0060' => 'nta', 'Nitab4.5_0003524g0030' => 'nta', 'Nitab4.5_0003673g0010' => 'nta', 'Nitab4.5_0003721g0050' => 'nta', 'Nitab4.5_0003829g0010' => 'nta', 'Nitab4.5_0003861g0050' => 'nta', 'Nitab4.5_0004225g0020' => 'nta', 'Nitab4.5_0004247g0010' => 'nta', 'Nitab4.5_0004260g0010' => 'nta', 'Nitab4.5_0004316g0010' => 'nta', 'Nitab4.5_0004688g0040' => 'nta', 'Nitab4.5_0004688g0090' => 'nta', 'Nitab4.5_0004746g0010' => 'nta', 'Nitab4.5_0004971g0010' => 'nta', 'Nitab4.5_0005023g0020' => 'nta', 'Nitab4.5_0005054g0010' => 'nta', 'Nitab4.5_0005054g0030' => 'nta', 'Nitab4.5_0005054g0050' => 'nta', 'Nitab4.5_0005104g0040' => 'nta', 'Nitab4.5_0005200g0070' => 'nta', 'Nitab4.5_0005423g0060' => 'nta', 'Nitab4.5_0005624g0030' => 'nta', 'Nitab4.5_0005624g0050' => 'nta', 'Nitab4.5_0005642g0030' => 'nta', 'Nitab4.5_0005791g0040' => 'nta', 'Nitab4.5_0005917g0010' => 'nta', 'Nitab4.5_0006241g0060' => 'nta', 'Nitab4.5_0006526g0040' => 'nta', 'Nitab4.5_0006660g0010' => 'nta', 'Nitab4.5_0006835g0020' => 'nta', 'Nitab4.5_0006911g0010' => 'nta', 'Nitab4.5_0006911g0020' => 'nta', 'Nitab4.5_0007024g0040' => 'nta', 'Nitab4.5_0007046g0020' => 'nta', 'Nitab4.5_0007441g0010' => 'nta', 'Nitab4.5_0007866g0010' => 'nta', 'Nitab4.5_0007866g0020' => 'nta', 'Nitab4.5_0007866g0030' => 'nta', 'Nitab4.5_0007884g0010' => 'nta', 'Nitab4.5_0008074g0040' => 'nta', 'Nitab4.5_0008844g0010' => 'nta', 'Nitab4.5_0009021g0020' => 'nta', 'Nitab4.5_0009094g0010' => 'nta', 'Nitab4.5_0009143g0010' => 'nta', 'Nitab4.5_0009143g0020' => 'nta', 'Nitab4.5_0009613g0030' => 'nta', 'Nitab4.5_0009745g0010' => 'nta', 'Nitab4.5_0009754g0030' => 'nta', 'Nitab4.5_0009848g0010' => 'nta', 'Nitab4.5_0009868g0050' => 'nta', 'Nitab4.5_0009878g0030' => 'nta', 'Nitab4.5_0009976g0010' => 'nta', 'Nitab4.5_0010073g0030' => 'nta', 'Nitab4.5_0011225g0010' => 'nta', 'Nitab4.5_0011520g0010' => 'nta', 'Nitab4.5_0011586g0010' => 'nta', 'Nitab4.5_0011589g0010' => 'nta', 'Nitab4.5_0011868g0010' => 'nta', 'Nitab4.5_0012306g0030' => 'nta', 'Nitab4.5_0012627g0010' => 'nta', 'Nitab4.5_0012917g0020' => 'nta', 'Nitab4.5_0013103g0010' => 'nta', 'Nitab4.5_0013103g0020' => 'nta', 'Nitab4.5_0013711g0010' => 'nta', 'Nitab4.5_0014025g0010' => 'nta', 'Nitab4.5_0014440g0010' => 'nta', 'Nitab4.5_0016697g0010' => 'nta', 'Nitab4.5_0019209g0010' => 'nta', 'Nitab4.5_0019514g0010' => 'nta', 'Nitab4.5_0019635g0010' => 'nta', 'Nitab4.5_0022906g0010' => 'nta', 'Nitab4.5_0028843g0010' => 'nta', 'Peaxi162Scf00007g01337' => 'pax', 'Peaxi162Scf00020g01022' => 'pax', 'Peaxi162Scf00020g01029' => 'pax', 'Peaxi162Scf00021g02527' => 'pax', 'Peaxi162Scf00028g00075' => 'pax', 'Peaxi162Scf00033g00212' => 'pax', 'Peaxi162Scf00033g00215' => 'pax', 'Peaxi162Scf00044g00014' => 'pax', 'Peaxi162Scf00047g00443' => 'pax', 'Peaxi162Scf00098g01534' => 'pax', 'Peaxi162Scf00098g01535' => 'pax', 'Peaxi162Scf00111g00518' => 'pax', 'Peaxi162Scf00131g00001' => 'pax', 'Peaxi162Scf00158g00318' => 'pax', 'Peaxi162Scf00164g00088' => 'pax', 'Peaxi162Scf00175g00342' => 'pax', 'Peaxi162Scf00176g00025' => 'pax', 'Peaxi162Scf00206g00046' => 'pax', 'Peaxi162Scf00211g00164' => 'pax', 'Peaxi162Scf00224g00009' => 'pax', 'Peaxi162Scf00285g00007' => 'pax', 'Peaxi162Scf00308g00076' => 'pax', 'Peaxi162Scf00345g00126' => 'pax', 'Peaxi162Scf00357g00621' => 'pax', 'Peaxi162Scf00363g00012' => 'pax', 'Peaxi162Scf00371g00312' => 'pax', 'Peaxi162Scf00371g00316' => 'pax', 'Peaxi162Scf00434g00033' => 'pax', 'Peaxi162Scf00519g00002' => 'pax', 'Peaxi162Scf00527g00077' => 'pax', 'Peaxi162Scf00528g00122' => 'pax', 'Peaxi162Scf00558g00118' => 'pax', 'Peaxi162Scf00565g00829' => 'pax', 'Peaxi162Scf00566g00069' => 'pax', 'Peaxi162Scf00582g00016' => 'pax', 'Peaxi162Scf00582g00019' => 'pax', 'Peaxi162Scf00586g00013' => 'pax', 'Peaxi162Scf00620g00218' => 'pax', 'Peaxi162Scf00677g10012' => 'pax', 'Peaxi162Scf00752g00055' => 'pax', 'Peaxi162Scf00752g00068' => 'pax', 'Peaxi162Scf00752g00610' => 'pax', 'Peaxi162Scf00795g00069' => 'pax', 'Peaxi162Scf00809g00418' => 'pax', 'Peaxi162Scf00842g00011' => 'pax', 'Peaxi162Scf00951g00019' => 'pax', 'Peaxi162Scf01253g00018' => 'pax', 'Peaxi162Scf01253g00023' => 'pax', 'Peaxi162Scf01464g00010' => 'pax', 'Peaxi162Scf03993g00002' => 'pax', 'Peaxi162Scf07758g00001' => 'pax', 'PGSC0003DMG400001258' => 'stu', 'PGSC0003DMG400001679' => 'stu', 'PGSC0003DMG400003268' => 'stu', 'PGSC0003DMG400006719' => 'stu', 'PGSC0003DMG400006953' => 'stu', 'PGSC0003DMG400009893' => 'stu', 'PGSC0003DMG400013166' => 'stu', 'PGSC0003DMG400013712' => 'stu', 'PGSC0003DMG400015528' => 'stu', 'PGSC0003DMG400017531' => 'stu', 'PGSC0003DMG400017712' => 'stu', 'PGSC0003DMG400020377' => 'stu', 'PGSC0003DMG400020694' => 'stu', 'PGSC0003DMG400021293' => 'stu', 'PGSC0003DMG400021840' => 'stu', 'PGSC0003DMG400021867' => 'stu', 'PGSC0003DMG400022355' => 'stu', 'PGSC0003DMG400023096' => 'stu', 'PGSC0003DMG400024382' => 'stu', 'PGSC0003DMG400024760' => 'stu', 'PGSC0003DMG400025489' => 'stu', 'PGSC0003DMG400026495' => 'stu', 'PGSC0003DMG400027837' => 'stu', 'PGSC0003DMG400029822' => 'stu', 'PGSC0003DMG400029865' => 'stu', 'PGSC0003DMG400030801' => 'stu', 'PGSC0003DMG400033169' => 'stu', 'PGSC0003DMG400033635' => 'stu', 'PGSC0003DMG400041066' => 'stu', 'PGSC0003DMG400044414' => 'stu', 'PGSC0003DMG401008657' => 'stu', 'PGSC0003DMG401017944' => 'stu', 'PGSC0003DMG401021841' => 'stu', 'PGSC0003DMG401024222' => 'stu', 'PGSC0003DMG402005640' => 'stu', 'PGSC0003DMG402010367' => 'stu', 'Solyc01g057165.1' => 'sly', 'Solyc01g057390.2' => 'sly', 'Solyc01g066612.1' => 'sly', 'Solyc01g066616.1' => 'sly', 'Solyc02g005070.3' => 'sly', 'Solyc02g038640.3' => 'sly', 'Solyc02g050265.1' => 'sly', 'Solyc03g044833.1' => 'sly', 'Solyc03g150112.1' => 'sly', 'Solyc04g025320.2' => 'sly', 'Solyc05g017795.1' => 'sly', 'Solyc05g017797.1' => 'sly', 'Solyc05g041780.1' => 'sly', 'Solyc07g014750.1' => 'sly', 'Solyc07g021465.1' => 'sly', 'Solyc08g042070.2' => 'sly', 'Solyc09g015140.2' => 'sly', 'Solyc11g013730.3' => 'sly', 'Solyc11g150110.1' => 'sly', 'Solyc12g042110.3' => 'sly', 'Sopen01g022130' => 'spe', 'Sopen02g008580' => 'spe', 'Sopen03g007870' => 'spe', 'Sopen03g024550' => 'spe', 'Sopen04g013910' => 'spe', 'Sopen04g022620' => 'spe', 'Sopen05g027490' => 'spe', 'Sopen06g019020' => 'spe', 'Sopen07g022080' => 'spe', 'Sopen08g012520' => 'spe', 'Sopen09g011030' => 'spe', 'Sopen09g021920' => 'spe', 'Sopen10g004570' => 'spe', 'Sopen10g020420' => 'spe', 'Sopen11g020370' => 'spe', 'Sopen12g016550' => 'spe', 'Sopen12g021190' => 'spe' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002261' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002261' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002261' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002261' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002261', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '298', 'num_species' => '7' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'CAN.G1003.1' => 'can', 'CAN.G129.27' => 'can', 'CAN.G135.43' => 'can', 'CAN.G15.23' => 'can', 'CAN.G165.11' => 'can', 'CAN.G165.12' => 'can', 'CAN.G170.120' => 'can', 'CAN.G205.2' => 'can', 'CAN.G217.13' => 'can', 'CAN.G217.14' => 'can', 'CAN.G22.6' => 'can', 'CAN.G223.2' => 'can', 'CAN.G255.16' => 'can', 'CAN.G280.21' => 'can', 'CAN.G315.7' => 'can', 'CAN.G339.20' => 'can', 'CAN.G352.57' => 'can', 'CAN.G352.58' => 'can', 'CAN.G446.10' => 'can', 'CAN.G499.5' => 'can', 'CAN.G5.31' => 'can', 'CAN.G619.1' => 'can', 'CAN.G765.17' => 'can', 'CAN.G784.3' => 'can', 'CAN.G864.2' => 'can', 'CAN.G933.9' => 'can', 'CSS0028456' => 'camsi', 'Nitab4.5_0000015g0360' => 'nta', 'Nitab4.5_0000062g0020' => 'nta', 'Nitab4.5_0000091g0340' => 'nta', 'Nitab4.5_0000091g0350' => 'nta', 'Nitab4.5_0000091g0370' => 'nta', 'Nitab4.5_0000105g0350' => 'nta', 'Nitab4.5_0000113g0330' => 'nta', 'Nitab4.5_0000113g0340' => 'nta', 'Nitab4.5_0000119g0230' => 'nta', 'Nitab4.5_0000230g0090' => 'nta', 'Nitab4.5_0000230g0260' => 'nta', 'Nitab4.5_0000231g0450' => 'nta', 'Nitab4.5_0000250g0180' => 'nta', 'Nitab4.5_0000317g0010' => 'nta', 'Nitab4.5_0000336g0030' => 'nta', 'Nitab4.5_0000402g0090' => 'nta', 'Nitab4.5_0000402g0100' => 'nta', 'Nitab4.5_0000443g0120' => 'nta', 'Nitab4.5_0000517g0100' => 'nta', 'Nitab4.5_0000570g0150' => 'nta', 'Nitab4.5_0000570g0170' => 'nta', 'Nitab4.5_0000578g0030' => 'nta', 'Nitab4.5_0000600g0030' => 'nta', 'Nitab4.5_0000600g0040' => 'nta', 'Nitab4.5_0000605g0050' => 'nta', 'Nitab4.5_0000616g0040' => 'nta', 'Nitab4.5_0000659g0060' => 'nta', 'Nitab4.5_0000659g0070' => 'nta', 'Nitab4.5_0000754g0300' => 'nta', 'Nitab4.5_0000842g0080' => 'nta', 'Nitab4.5_0000877g0030' => 'nta', 'Nitab4.5_0000890g0030' => 'nta', 'Nitab4.5_0000890g0060' => 'nta', 'Nitab4.5_0000901g0030' => 'nta', 'Nitab4.5_0000941g0020' => 'nta', 'Nitab4.5_0000958g0040' => 'nta', 'Nitab4.5_0000958g0050' => 'nta', 'Nitab4.5_0001057g0080' => 'nta', 'Nitab4.5_0001280g0040' => 'nta', 'Nitab4.5_0001372g0040' => 'nta', 'Nitab4.5_0001504g0150' => 'nta', 'Nitab4.5_0001522g0080' => 'nta', 'Nitab4.5_0001568g0120' => 'nta', 'Nitab4.5_0001604g0090' => 'nta', 'Nitab4.5_0001659g0090' => 'nta', 'Nitab4.5_0001709g0100' => 'nta', 'Nitab4.5_0001755g0030' => 'nta', 'Nitab4.5_0001879g0040' => 'nta', 'Nitab4.5_0001879g0060' => 'nta', 'Nitab4.5_0001899g0050' => 'nta', 'Nitab4.5_0002052g0140' => 'nta', 'Nitab4.5_0002141g0030' => 'nta', 'Nitab4.5_0002219g0070' => 'nta', 'Nitab4.5_0002219g0080' => 'nta', 'Nitab4.5_0002221g0080' => 'nta', 'Nitab4.5_0002221g0090' => 'nta', 'Nitab4.5_0002374g0030' => 'nta', 'Nitab4.5_0002427g0030' => 'nta', 'Nitab4.5_0002569g0120' => 'nta', 'Nitab4.5_0002588g0010' => 'nta', 'Nitab4.5_0002591g0030' => 'nta', 'Nitab4.5_0002591g0060' => 'nta', 'Nitab4.5_0002625g0050' => 'nta', 'Nitab4.5_0002628g0030' => 'nta', 'Nitab4.5_0002668g0050' => 'nta', 'Nitab4.5_0002800g0010' => 'nta', 'Nitab4.5_0002942g0030' => 'nta', 'Nitab4.5_0002942g0050' => 'nta', 'Nitab4.5_0002942g0070' => 'nta', 'Nitab4.5_0003011g0030' => 'nta', 'Nitab4.5_0003011g0040' => 'nta', 'Nitab4.5_0003011g0050' => 'nta', 'Nitab4.5_0003152g0090' => 'nta', 'Nitab4.5_0003285g0010' => 'nta', 'Nitab4.5_0003349g0050' => 'nta', 'Nitab4.5_0003349g0060' => 'nta', 'Nitab4.5_0003524g0030' => 'nta', 'Nitab4.5_0003673g0010' => 'nta', 'Nitab4.5_0003721g0050' => 'nta', 'Nitab4.5_0003829g0010' => 'nta', 'Nitab4.5_0003861g0050' => 'nta', 'Nitab4.5_0004225g0020' => 'nta', 'Nitab4.5_0004247g0010' => 'nta', 'Nitab4.5_0004260g0010' => 'nta', 'Nitab4.5_0004316g0010' => 'nta', 'Nitab4.5_0004688g0040' => 'nta', 'Nitab4.5_0004688g0090' => 'nta', 'Nitab4.5_0004746g0010' => 'nta', 'Nitab4.5_0004971g0010' => 'nta', 'Nitab4.5_0005023g0020' => 'nta', 'Nitab4.5_0005054g0010' => 'nta', 'Nitab4.5_0005054g0030' => 'nta', 'Nitab4.5_0005054g0050' => 'nta', 'Nitab4.5_0005104g0040' => 'nta', 'Nitab4.5_0005200g0070' => 'nta', 'Nitab4.5_0005423g0060' => 'nta', 'Nitab4.5_0005624g0030' => 'nta', 'Nitab4.5_0005624g0050' => 'nta', 'Nitab4.5_0005642g0030' => 'nta', 'Nitab4.5_0005791g0040' => 'nta', 'Nitab4.5_0005917g0010' => 'nta', 'Nitab4.5_0006241g0060' => 'nta', 'Nitab4.5_0006526g0040' => 'nta', 'Nitab4.5_0006660g0010' => 'nta', 'Nitab4.5_0006835g0020' => 'nta', 'Nitab4.5_0006911g0010' => 'nta', 'Nitab4.5_0006911g0020' => 'nta', 'Nitab4.5_0007024g0040' => 'nta', 'Nitab4.5_0007046g0020' => 'nta', 'Nitab4.5_0007441g0010' => 'nta', 'Nitab4.5_0007866g0010' => 'nta', 'Nitab4.5_0007866g0020' => 'nta', 'Nitab4.5_0007866g0030' => 'nta', 'Nitab4.5_0007884g0010' => 'nta', 'Nitab4.5_0008074g0040' => 'nta', 'Nitab4.5_0008844g0010' => 'nta', 'Nitab4.5_0009021g0020' => 'nta', 'Nitab4.5_0009094g0010' => 'nta', 'Nitab4.5_0009143g0010' => 'nta', 'Nitab4.5_0009143g0020' => 'nta', 'Nitab4.5_0009613g0030' => 'nta', 'Nitab4.5_0009745g0010' => 'nta', 'Nitab4.5_0009754g0030' => 'nta', 'Nitab4.5_0009848g0010' => 'nta', 'Nitab4.5_0009868g0050' => 'nta', 'Nitab4.5_0009878g0030' => 'nta', 'Nitab4.5_0009976g0010' => 'nta', 'Nitab4.5_0010073g0030' => 'nta', 'Nitab4.5_0011225g0010' => 'nta', 'Nitab4.5_0011520g0010' => 'nta', 'Nitab4.5_0011586g0010' => 'nta', 'Nitab4.5_0011589g0010' => 'nta', 'Nitab4.5_0011868g0010' => 'nta', 'Nitab4.5_0012306g0030' => 'nta', 'Nitab4.5_0012627g0010' => 'nta', 'Nitab4.5_0012917g0020' => 'nta', 'Nitab4.5_0013103g0010' => 'nta', 'Nitab4.5_0013103g0020' => 'nta', 'Nitab4.5_0013711g0010' => 'nta', 'Nitab4.5_0014025g0010' => 'nta', 'Nitab4.5_0014440g0010' => 'nta', 'Nitab4.5_0016697g0010' => 'nta', 'Nitab4.5_0019209g0010' => 'nta', 'Nitab4.5_0019514g0010' => 'nta', 'Nitab4.5_0019635g0010' => 'nta', 'Nitab4.5_0022906g0010' => 'nta', 'Nitab4.5_0028843g0010' => 'nta', 'Peaxi162Scf00007g01337' => 'pax', 'Peaxi162Scf00020g01022' => 'pax', 'Peaxi162Scf00020g01029' => 'pax', 'Peaxi162Scf00021g02527' => 'pax', 'Peaxi162Scf00028g00075' => 'pax', 'Peaxi162Scf00033g00212' => 'pax', 'Peaxi162Scf00033g00215' => 'pax', 'Peaxi162Scf00044g00014' => 'pax', 'Peaxi162Scf00047g00443' => 'pax', 'Peaxi162Scf00098g01534' => 'pax', 'Peaxi162Scf00098g01535' => 'pax', 'Peaxi162Scf00111g00518' => 'pax', 'Peaxi162Scf00131g00001' => 'pax', 'Peaxi162Scf00158g00318' => 'pax', 'Peaxi162Scf00164g00088' => 'pax', 'Peaxi162Scf00175g00342' => 'pax', 'Peaxi162Scf00176g00025' => 'pax', 'Peaxi162Scf00206g00046' => 'pax', 'Peaxi162Scf00211g00164' => 'pax', 'Peaxi162Scf00224g00009' => 'pax', 'Peaxi162Scf00285g00007' => 'pax', 'Peaxi162Scf00308g00076' => 'pax', 'Peaxi162Scf00345g00126' => 'pax', 'Peaxi162Scf00357g00621' => 'pax', 'Peaxi162Scf00363g00012' => 'pax', 'Peaxi162Scf00371g00312' => 'pax', 'Peaxi162Scf00371g00316' => 'pax', 'Peaxi162Scf00434g00033' => 'pax', 'Peaxi162Scf00519g00002' => 'pax', 'Peaxi162Scf00527g00077' => 'pax', 'Peaxi162Scf00528g00122' => 'pax', 'Peaxi162Scf00558g00118' => 'pax', 'Peaxi162Scf00565g00829' => 'pax', 'Peaxi162Scf00566g00069' => 'pax', 'Peaxi162Scf00582g00016' => 'pax', 'Peaxi162Scf00582g00019' => 'pax', 'Peaxi162Scf00586g00013' => 'pax', 'Peaxi162Scf00620g00218' => 'pax', 'Peaxi162Scf00677g10012' => 'pax', 'Peaxi162Scf00752g00055' => 'pax', 'Peaxi162Scf00752g00068' => 'pax', 'Peaxi162Scf00752g00610' => 'pax', 'Peaxi162Scf00795g00069' => 'pax', 'Peaxi162Scf00809g00418' => 'pax', 'Peaxi162Scf00842g00011' => 'pax', 'Peaxi162Scf00951g00019' => 'pax', 'Peaxi162Scf01253g00018' => 'pax', 'Peaxi162Scf01253g00023' => 'pax', 'Peaxi162Scf01464g00010' => 'pax', 'Peaxi162Scf03993g00002' => 'pax', 'Peaxi162Scf07758g00001' => 'pax', 'PGSC0003DMG400001258' => 'stu', 'PGSC0003DMG400001679' => 'stu', 'PGSC0003DMG400003268' => 'stu', 'PGSC0003DMG400006719' => 'stu', 'PGSC0003DMG400006953' => 'stu', 'PGSC0003DMG400009893' => 'stu', 'PGSC0003DMG400013166' => 'stu', 'PGSC0003DMG400013712' => 'stu', 'PGSC0003DMG400015528' => 'stu', 'PGSC0003DMG400017531' => 'stu', 'PGSC0003DMG400017712' => 'stu', 'PGSC0003DMG400020377' => 'stu', 'PGSC0003DMG400020694' => 'stu', 'PGSC0003DMG400021293' => 'stu', 'PGSC0003DMG400021840' => 'stu', 'PGSC0003DMG400021867' => 'stu', 'PGSC0003DMG400022355' => 'stu', 'PGSC0003DMG400023096' => 'stu', 'PGSC0003DMG400024382' => 'stu', 'PGSC0003DMG400024760' => 'stu', 'PGSC0003DMG400025489' => 'stu', 'PGSC0003DMG400026495' => 'stu', 'PGSC0003DMG400027837' => 'stu', 'PGSC0003DMG400029822' => 'stu', 'PGSC0003DMG400029865' => 'stu', 'PGSC0003DMG400030801' => 'stu', 'PGSC0003DMG400033169' => 'stu', 'PGSC0003DMG400033635' => 'stu', 'PGSC0003DMG400041066' => 'stu', 'PGSC0003DMG400044414' => 'stu', 'PGSC0003DMG401008657' => 'stu', 'PGSC0003DMG401017944' => 'stu', 'PGSC0003DMG401021841' => 'stu', 'PGSC0003DMG401024222' => 'stu', 'PGSC0003DMG402005640' => 'stu', 'PGSC0003DMG402010367' => 'stu', 'Solyc01g057165.1' => 'sly', 'Solyc01g057390.2' => 'sly', 'Solyc01g066612.1' => 'sly', 'Solyc01g066616.1' => 'sly', 'Solyc02g005070.3' => 'sly', 'Solyc02g038640.3' => 'sly', 'Solyc02g050265.1' => 'sly', 'Solyc03g044833.1' => 'sly', 'Solyc03g150112.1' => 'sly', 'Solyc04g025320.2' => 'sly', 'Solyc05g017795.1' => 'sly', 'Solyc05g017797.1' => 'sly', 'Solyc05g041780.1' => 'sly', 'Solyc07g014750.1' => 'sly', 'Solyc07g021465.1' => 'sly', 'Solyc08g042070.2' => 'sly', 'Solyc09g015140.2' => 'sly', 'Solyc11g013730.3' => 'sly', 'Solyc11g150110.1' => 'sly', 'Solyc12g042110.3' => 'sly', 'Sopen01g022130' => 'spe', 'Sopen02g008580' => 'spe', 'Sopen03g007870' => 'spe', 'Sopen03g024550' => 'spe', 'Sopen04g013910' => 'spe', 'Sopen04g022620' => 'spe', 'Sopen05g027490' => 'spe', 'Sopen06g019020' => 'spe', 'Sopen07g022080' => 'spe', 'Sopen08g012520' => 'spe', 'Sopen09g011030' => 'spe', 'Sopen09g021920' => 'spe', 'Sopen10g004570' => 'spe', 'Sopen10g020420' => 'spe', 'Sopen11g020370' => 'spe', 'Sopen12g016550' => 'spe', 'Sopen12g021190' => 'spe' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002261', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002261' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002261', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '298', 'num_species' => '7' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002261' ) ), 'genes' => array( 'CAN.G1003.1' => 'can', 'CAN.G129.27' => 'can', 'CAN.G135.43' => 'can', 'CAN.G15.23' => 'can', 'CAN.G165.11' => 'can', 'CAN.G165.12' => 'can', 'CAN.G170.120' => 'can', 'CAN.G205.2' => 'can', 'CAN.G217.13' => 'can', 'CAN.G217.14' => 'can', 'CAN.G22.6' => 'can', 'CAN.G223.2' => 'can', 'CAN.G255.16' => 'can', 'CAN.G280.21' => 'can', 'CAN.G315.7' => 'can', 'CAN.G339.20' => 'can', 'CAN.G352.57' => 'can', 'CAN.G352.58' => 'can', 'CAN.G446.10' => 'can', 'CAN.G499.5' => 'can', 'CAN.G5.31' => 'can', 'CAN.G619.1' => 'can', 'CAN.G765.17' => 'can', 'CAN.G784.3' => 'can', 'CAN.G864.2' => 'can', 'CAN.G933.9' => 'can', 'CSS0028456' => 'camsi', 'Nitab4.5_0000015g0360' => 'nta', 'Nitab4.5_0000062g0020' => 'nta', 'Nitab4.5_0000091g0340' => 'nta', 'Nitab4.5_0000091g0350' => 'nta', 'Nitab4.5_0000091g0370' => 'nta', 'Nitab4.5_0000105g0350' => 'nta', 'Nitab4.5_0000113g0330' => 'nta', 'Nitab4.5_0000113g0340' => 'nta', 'Nitab4.5_0000119g0230' => 'nta', 'Nitab4.5_0000230g0090' => 'nta', 'Nitab4.5_0000230g0260' => 'nta', 'Nitab4.5_0000231g0450' => 'nta', 'Nitab4.5_0000250g0180' => 'nta', 'Nitab4.5_0000317g0010' => 'nta', 'Nitab4.5_0000336g0030' => 'nta', 'Nitab4.5_0000402g0090' => 'nta', 'Nitab4.5_0000402g0100' => 'nta', 'Nitab4.5_0000443g0120' => 'nta', 'Nitab4.5_0000517g0100' => 'nta', 'Nitab4.5_0000570g0150' => 'nta', 'Nitab4.5_0000570g0170' => 'nta', 'Nitab4.5_0000578g0030' => 'nta', 'Nitab4.5_0000600g0030' => 'nta', 'Nitab4.5_0000600g0040' => 'nta', 'Nitab4.5_0000605g0050' => 'nta', 'Nitab4.5_0000616g0040' => 'nta', 'Nitab4.5_0000659g0060' => 'nta', 'Nitab4.5_0000659g0070' => 'nta', 'Nitab4.5_0000754g0300' => 'nta', 'Nitab4.5_0000842g0080' => 'nta', 'Nitab4.5_0000877g0030' => 'nta', 'Nitab4.5_0000890g0030' => 'nta', 'Nitab4.5_0000890g0060' => 'nta', 'Nitab4.5_0000901g0030' => 'nta', 'Nitab4.5_0000941g0020' => 'nta', 'Nitab4.5_0000958g0040' => 'nta', 'Nitab4.5_0000958g0050' => 'nta', 'Nitab4.5_0001057g0080' => 'nta', 'Nitab4.5_0001280g0040' => 'nta', 'Nitab4.5_0001372g0040' => 'nta', 'Nitab4.5_0001504g0150' => 'nta', 'Nitab4.5_0001522g0080' => 'nta', 'Nitab4.5_0001568g0120' => 'nta', 'Nitab4.5_0001604g0090' => 'nta', 'Nitab4.5_0001659g0090' => 'nta', 'Nitab4.5_0001709g0100' => 'nta', 'Nitab4.5_0001755g0030' => 'nta', 'Nitab4.5_0001879g0040' => 'nta', 'Nitab4.5_0001879g0060' => 'nta', 'Nitab4.5_0001899g0050' => 'nta', 'Nitab4.5_0002052g0140' => 'nta', 'Nitab4.5_0002141g0030' => 'nta', 'Nitab4.5_0002219g0070' => 'nta', 'Nitab4.5_0002219g0080' => 'nta', 'Nitab4.5_0002221g0080' => 'nta', 'Nitab4.5_0002221g0090' => 'nta', 'Nitab4.5_0002374g0030' => 'nta', 'Nitab4.5_0002427g0030' => 'nta', 'Nitab4.5_0002569g0120' => 'nta', 'Nitab4.5_0002588g0010' => 'nta', 'Nitab4.5_0002591g0030' => 'nta', 'Nitab4.5_0002591g0060' => 'nta', 'Nitab4.5_0002625g0050' => 'nta', 'Nitab4.5_0002628g0030' => 'nta', 'Nitab4.5_0002668g0050' => 'nta', 'Nitab4.5_0002800g0010' => 'nta', 'Nitab4.5_0002942g0030' => 'nta', 'Nitab4.5_0002942g0050' => 'nta', 'Nitab4.5_0002942g0070' => 'nta', 'Nitab4.5_0003011g0030' => 'nta', 'Nitab4.5_0003011g0040' => 'nta', 'Nitab4.5_0003011g0050' => 'nta', 'Nitab4.5_0003152g0090' => 'nta', 'Nitab4.5_0003285g0010' => 'nta', 'Nitab4.5_0003349g0050' => 'nta', 'Nitab4.5_0003349g0060' => 'nta', 'Nitab4.5_0003524g0030' => 'nta', 'Nitab4.5_0003673g0010' => 'nta', 'Nitab4.5_0003721g0050' => 'nta', 'Nitab4.5_0003829g0010' => 'nta', 'Nitab4.5_0003861g0050' => 'nta', 'Nitab4.5_0004225g0020' => 'nta', 'Nitab4.5_0004247g0010' => 'nta', 'Nitab4.5_0004260g0010' => 'nta', 'Nitab4.5_0004316g0010' => 'nta', 'Nitab4.5_0004688g0040' => 'nta', 'Nitab4.5_0004688g0090' => 'nta', 'Nitab4.5_0004746g0010' => 'nta', 'Nitab4.5_0004971g0010' => 'nta', 'Nitab4.5_0005023g0020' => 'nta', 'Nitab4.5_0005054g0010' => 'nta', 'Nitab4.5_0005054g0030' => 'nta', 'Nitab4.5_0005054g0050' => 'nta', 'Nitab4.5_0005104g0040' => 'nta', 'Nitab4.5_0005200g0070' => 'nta', 'Nitab4.5_0005423g0060' => 'nta', 'Nitab4.5_0005624g0030' => 'nta', 'Nitab4.5_0005624g0050' => 'nta', 'Nitab4.5_0005642g0030' => 'nta', 'Nitab4.5_0005791g0040' => 'nta', 'Nitab4.5_0005917g0010' => 'nta', 'Nitab4.5_0006241g0060' => 'nta', 'Nitab4.5_0006526g0040' => 'nta', 'Nitab4.5_0006660g0010' => 'nta', 'Nitab4.5_0006835g0020' => 'nta', 'Nitab4.5_0006911g0010' => 'nta', 'Nitab4.5_0006911g0020' => 'nta', 'Nitab4.5_0007024g0040' => 'nta', 'Nitab4.5_0007046g0020' => 'nta', 'Nitab4.5_0007441g0010' => 'nta', 'Nitab4.5_0007866g0010' => 'nta', 'Nitab4.5_0007866g0020' => 'nta', 'Nitab4.5_0007866g0030' => 'nta', 'Nitab4.5_0007884g0010' => 'nta', 'Nitab4.5_0008074g0040' => 'nta', 'Nitab4.5_0008844g0010' => 'nta', 'Nitab4.5_0009021g0020' => 'nta', 'Nitab4.5_0009094g0010' => 'nta', 'Nitab4.5_0009143g0010' => 'nta', 'Nitab4.5_0009143g0020' => 'nta', 'Nitab4.5_0009613g0030' => 'nta', 'Nitab4.5_0009745g0010' => 'nta', 'Nitab4.5_0009754g0030' => 'nta', 'Nitab4.5_0009848g0010' => 'nta', 'Nitab4.5_0009868g0050' => 'nta', 'Nitab4.5_0009878g0030' => 'nta', 'Nitab4.5_0009976g0010' => 'nta', 'Nitab4.5_0010073g0030' => 'nta', 'Nitab4.5_0011225g0010' => 'nta', 'Nitab4.5_0011520g0010' => 'nta', 'Nitab4.5_0011586g0010' => 'nta', 'Nitab4.5_0011589g0010' => 'nta', 'Nitab4.5_0011868g0010' => 'nta', 'Nitab4.5_0012306g0030' => 'nta', 'Nitab4.5_0012627g0010' => 'nta', 'Nitab4.5_0012917g0020' => 'nta', 'Nitab4.5_0013103g0010' => 'nta', 'Nitab4.5_0013103g0020' => 'nta', 'Nitab4.5_0013711g0010' => 'nta', 'Nitab4.5_0014025g0010' => 'nta', 'Nitab4.5_0014440g0010' => 'nta', 'Nitab4.5_0016697g0010' => 'nta', 'Nitab4.5_0019209g0010' => 'nta', 'Nitab4.5_0019514g0010' => 'nta', 'Nitab4.5_0019635g0010' => 'nta', 'Nitab4.5_0022906g0010' => 'nta', 'Nitab4.5_0028843g0010' => 'nta', 'Peaxi162Scf00007g01337' => 'pax', 'Peaxi162Scf00020g01022' => 'pax', 'Peaxi162Scf00020g01029' => 'pax', 'Peaxi162Scf00021g02527' => 'pax', 'Peaxi162Scf00028g00075' => 'pax', 'Peaxi162Scf00033g00212' => 'pax', 'Peaxi162Scf00033g00215' => 'pax', 'Peaxi162Scf00044g00014' => 'pax', 'Peaxi162Scf00047g00443' => 'pax', 'Peaxi162Scf00098g01534' => 'pax', 'Peaxi162Scf00098g01535' => 'pax', 'Peaxi162Scf00111g00518' => 'pax', 'Peaxi162Scf00131g00001' => 'pax', 'Peaxi162Scf00158g00318' => 'pax', 'Peaxi162Scf00164g00088' => 'pax', 'Peaxi162Scf00175g00342' => 'pax', 'Peaxi162Scf00176g00025' => 'pax', 'Peaxi162Scf00206g00046' => 'pax', 'Peaxi162Scf00211g00164' => 'pax', 'Peaxi162Scf00224g00009' => 'pax', 'Peaxi162Scf00285g00007' => 'pax', 'Peaxi162Scf00308g00076' => 'pax', 'Peaxi162Scf00345g00126' => 'pax', 'Peaxi162Scf00357g00621' => 'pax', 'Peaxi162Scf00363g00012' => 'pax', 'Peaxi162Scf00371g00312' => 'pax', 'Peaxi162Scf00371g00316' => 'pax', 'Peaxi162Scf00434g00033' => 'pax', 'Peaxi162Scf00519g00002' => 'pax', 'Peaxi162Scf00527g00077' => 'pax', 'Peaxi162Scf00528g00122' => 'pax', 'Peaxi162Scf00558g00118' => 'pax', 'Peaxi162Scf00565g00829' => 'pax', 'Peaxi162Scf00566g00069' => 'pax', 'Peaxi162Scf00582g00016' => 'pax', 'Peaxi162Scf00582g00019' => 'pax', 'Peaxi162Scf00586g00013' => 'pax', 'Peaxi162Scf00620g00218' => 'pax', 'Peaxi162Scf00677g10012' => 'pax', 'Peaxi162Scf00752g00055' => 'pax', 'Peaxi162Scf00752g00068' => 'pax', 'Peaxi162Scf00752g00610' => 'pax', 'Peaxi162Scf00795g00069' => 'pax', 'Peaxi162Scf00809g00418' => 'pax', 'Peaxi162Scf00842g00011' => 'pax', 'Peaxi162Scf00951g00019' => 'pax', 'Peaxi162Scf01253g00018' => 'pax', 'Peaxi162Scf01253g00023' => 'pax', 'Peaxi162Scf01464g00010' => 'pax', 'Peaxi162Scf03993g00002' => 'pax', 'Peaxi162Scf07758g00001' => 'pax', 'PGSC0003DMG400001258' => 'stu', 'PGSC0003DMG400001679' => 'stu', 'PGSC0003DMG400003268' => 'stu', 'PGSC0003DMG400006719' => 'stu', 'PGSC0003DMG400006953' => 'stu', 'PGSC0003DMG400009893' => 'stu', 'PGSC0003DMG400013166' => 'stu', 'PGSC0003DMG400013712' => 'stu', 'PGSC0003DMG400015528' => 'stu', 'PGSC0003DMG400017531' => 'stu', 'PGSC0003DMG400017712' => 'stu', 'PGSC0003DMG400020377' => 'stu', 'PGSC0003DMG400020694' => 'stu', 'PGSC0003DMG400021293' => 'stu', 'PGSC0003DMG400021840' => 'stu', 'PGSC0003DMG400021867' => 'stu', 'PGSC0003DMG400022355' => 'stu', 'PGSC0003DMG400023096' => 'stu', 'PGSC0003DMG400024382' => 'stu', 'PGSC0003DMG400024760' => 'stu', 'PGSC0003DMG400025489' => 'stu', 'PGSC0003DMG400026495' => 'stu', 'PGSC0003DMG400027837' => 'stu', 'PGSC0003DMG400029822' => 'stu', 'PGSC0003DMG400029865' => 'stu', 'PGSC0003DMG400030801' => 'stu', 'PGSC0003DMG400033169' => 'stu', 'PGSC0003DMG400033635' => 'stu', 'PGSC0003DMG400041066' => 'stu', 'PGSC0003DMG400044414' => 'stu', 'PGSC0003DMG401008657' => 'stu', 'PGSC0003DMG401017944' => 'stu', 'PGSC0003DMG401021841' => 'stu', 'PGSC0003DMG401024222' => 'stu', 'PGSC0003DMG402005640' => 'stu', 'PGSC0003DMG402010367' => 'stu', 'Solyc01g057165.1' => 'sly', 'Solyc01g057390.2' => 'sly', 'Solyc01g066612.1' => 'sly', 'Solyc01g066616.1' => 'sly', 'Solyc02g005070.3' => 'sly', 'Solyc02g038640.3' => 'sly', 'Solyc02g050265.1' => 'sly', 'Solyc03g044833.1' => 'sly', 'Solyc03g150112.1' => 'sly', 'Solyc04g025320.2' => 'sly', 'Solyc05g017795.1' => 'sly', 'Solyc05g017797.1' => 'sly', 'Solyc05g041780.1' => 'sly', 'Solyc07g014750.1' => 'sly', 'Solyc07g021465.1' => 'sly', 'Solyc08g042070.2' => 'sly', 'Solyc09g015140.2' => 'sly', 'Solyc11g013730.3' => 'sly', 'Solyc11g150110.1' => 'sly', 'Solyc12g042110.3' => 'sly', 'Sopen01g022130' => 'spe', 'Sopen02g008580' => 'spe', 'Sopen03g007870' => 'spe', 'Sopen03g024550' => 'spe', 'Sopen04g013910' => 'spe', 'Sopen04g022620' => 'spe', 'Sopen05g027490' => 'spe', 'Sopen06g019020' => 'spe', 'Sopen07g022080' => 'spe', 'Sopen08g012520' => 'spe', 'Sopen09g011030' => 'spe', 'Sopen09g021920' => 'spe', 'Sopen10g004570' => 'spe', 'Sopen10g020420' => 'spe', 'Sopen11g020370' => 'spe', 'Sopen12g016550' => 'spe', 'Sopen12g021190' => 'spe' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002261' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002261' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002261' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002261' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151