Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '340', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A06p05840' => 'bna', 'A08p34850' => 'bna', 'A09p65620' => 'bna', 'Aa31sc136G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.835' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.170' => 'aag', 'Actinidia01462' => 'ach', 'Actinidia05685' => 'ach', 'Actinidia08915' => 'ach', 'Actinidia23651' => 'ach', 'Actinidia36847' => 'ach', 'Actinidia40250' => 'ach', 'Actinidia40251' => 'ach', 'Ah.04g160360' => 'amhyb', 'Ah.06g189480' => 'amhyb', 'AL1G19450' => 'aly', 'Aqoxy2G03051' => 'aox', 'Aqoxy5G00657' => 'aox', 'Aqoxy5G03017' => 'aox', 'Aqoxy5G03018' => 'aox', 'Aqoxy6G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B5S4LJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX6P8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML1F2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7ZVQ' => 'arhy', 'AT1G09020' => 'ath', 'ATR0706G230' => 'atr', 'Atru.chr2.359' => 'acertr', 'Atru.chr4.2801' => 'acertr', 'Atru.chr4.2802' => 'acertr', 'AUR62000807' => 'cqu', 'AUR62005161' => 'cqu', 'BcaB07g34119' => 'bca', 'BcaC05g24753' => 'bca', 'BcaC07g38469' => 'bca', 'BcaC07g41908' => 'bca', 'BolC5t29460H' => 'bol', 'BolC8t48881H' => 'bol', 'BolC8t52498H' => 'bol', 'BraA06t23794Z' => 'bra', 'BraA08t35396Z' => 'bra', 'BraA09t41906Z' => 'bra', 'C05p07050' => 'bna', 'C08p12410' => 'bna', 'C08p49700' => 'bna', 'CAN.G1008.45' => 'can', 'CAN.G1034.24' => 'can', 'CAN.G223.18' => 'can', 'CANSAT54G0129' => 'cansat', 'CANSAT78G2473' => 'cansat', 'CARHR008910' => 'chi', 'Carub.0001s0834' => 'cru', 'Ca_05810_v3' => 'car', 'Ca_10117_v3' => 'car', 'Ca_10137_v3' => 'car', 'Ca_21533_v3' => 'car', 'CBR_g22060' => 'cbr', 'Cc02_g33290' => 'ccan', 'Cc03_g02060' => 'ccan', 'Cc04_g05690' => 'ccan', 'CDE01G0552' => 'cde', 'CDE05G2787' => 'cde', 'CDE12G0773' => 'cde', 'Cfa006602' => 'cfa', 'Cfa015367' => 'cfa', 'Cfa025937' => 'cfa', 'Ciclev10000984m.g' => 'ccl', 'Ciclev10004799m.g' => 'ccl', 'CiPaw.01G150500' => 'cil', 'CiPaw.02G084500' => 'cil', 'CiPaw.07G019000' => 'cil', 'CiPaw.08G163800' => 'cil', 'CiPaw.08G172600' => 'cil', 'ClCG06G005280' => 'cla', 'COL.COLO4_13899' => 'col', 'Cpa.g.sc16.154' => 'cpa', 'Cpa.g.sc16.156' => 'cpa', 'Cpa.g.sc48.71' => 'cpa', 'Cre12.g484350' => 'cre', 'CsaV3_6G017330' => 'csa', 'CSS0002596' => 'camsi', 'CSS0007501' => 'camsi', 'CSS0019245' => 'camsi', 'CSS0026972' => 'camsi', 'CSS0029143' => 'camsi', 'CSS0029500' => 'camsi', 'CSS0031005' => 'camsi', 'CSS0040291' => 'camsi', 'CSS0043577' => 'camsi', 'CSS0043685' => 'camsi', 'CSS0045503' => 'camsi', 'DCAR_024559' => 'dca', 'DCAR_025635' => 'dca', 'DCAR_027085' => 'dca', 'DCAR_027086' => 'dca', 'DCAR_030540' => 'dca', 'Dinv13702' => 'din', 'Dinv30776' => 'din', 'Dinv38305' => 'din', 'Dinv40303' => 'din', 'Dinv44399' => 'din', 'Dinv44400' => 'din', 'Duzib052G0601' => 'dzi', 'Duzib128G0464' => 'dzi', 'Duzib151G0890' => 'dzi', 'Duzib177G0180' => 'dzi', 'Duzib212G0315' => 'dzi', 'ECA234G0557' => 'eca', 'ECA240G3320' => 'eca', 'ECA247G3703' => 'eca', 'EL10Ac4g09404' => 'bvu', 'Eucgr.H03882' => 'egr', 'FAN02G4595' => 'fan', 'FAN05G0428' => 'fan', 'FAN07G0952' => 'fan', 'FAN09G2447' => 'fan', 'FAN11G3583' => 'fan', 'FAN12G0743' => 'fan', 'FAN12G1350' => 'fan', 'FAN14G1558' => 'fan', 'FAN16G1520' => 'fan', 'FAN17G0187' => 'fan', 'FAN22G1723' => 'fan', 'FAN25G3255' => 'fan', 'FvH4_3g04200' => 'fve', 'FvH4_4g17690' => 'fve', 'FvH4_6g06180' => 'fve', 'Glyma.03G236900' => 'gma', 'Glyma.07G249700' => 'gma', 'Glyma.09G046800' => 'gma', 'Glyma.10G153700' => 'gma', 'Glyma.15G154300' => 'gma', 'Glyma.17G024700' => 'gma', 'Glyma.19G234600' => 'gma', 'Glyma.20G234600' => 'gma', 'Gohir.A02G048300' => 'ghi', 'Gohir.A08G209700' => 'ghi', 'Gohir.A09G240000' => 'ghi', 'Gohir.A10G162700' => 'ghi', 'Gohir.A11G265800' => 'ghi', 'Gohir.A11G295200' => 'ghi', 'Gohir.D02G053400' => 'ghi', 'Gohir.D08G226600' => 'ghi', 'Gohir.D09G240800' => 'ghi', 'Gohir.D10G169100' => 'ghi', 'Gohir.D11G275900' => 'ghi', 'Gohir.D11G311700' => 'ghi', 'Gorai.004G240500' => 'gra', 'Gorai.005G059200' => 'gra', 'Gorai.006G264100' => 'gra', 'Gorai.007G298100' => 'gra', 'Gorai.007G342100' => 'gra', 'Gorai.011G188600' => 'gra', 'GSVIVG01000091001' => 'vvi', 'GSVIVG01017767001' => 'vvi', 'HanXRQChr03g0080891' => 'han', 'HanXRQChr03g0090621' => 'han', 'HanXRQChr09g0262571' => 'han', 'HanXRQChr10g0297811' => 'han', 'HanXRQChr10g0316001' => 'han', 'HanXRQChr13g0410101' => 'han', 'Haze_01235' => 'cav', 'Haze_04175' => 'cav', 'Hma1.2p1_0698F.1_g205330' => 'hma', 'Hma1.2p1_1334F.1_g276320' => 'hma', 'HPP92_010659' => 'vpl', 'HPP92_010705' => 'vpl', 'HPP92_011822' => 'vpl', 'HPP92_013704' => 'vpl', 'Hund07079' => 'sun', 'Lalb_Chr07g0177641' => 'lal', 'Lalb_Chr15g0077251' => 'lal', 'Lalb_Chr18g0045681' => 'lal', 'Lalb_Chr18g0051801' => 'lal', 'Lalb_Chr20g0114431' => 'lal', 'Lj1g0019878' => 'lja', 'Lj4g0019649' => 'lja', 'Lj5A504G36' => 'lonja', 'Lj5A504G37' => 'lonja', 'Lj5A85T110' => 'lonja', 'Lj5g0015789' => 'lja', 'Lj5g0026589' => 'lja', 'Lj6A672G26' => 'lonja', 'Lj6g0006467' => 'lja', 'Lju1819C2G19' => 'lonja', 'Lsat_1_v5_gn_1_30080' => 'lsa', 'Lsat_1_v5_gn_5_105841' => 'lsa', 'Lsat_1_v5_gn_5_146681' => 'lsa', 'Lsat_1_v5_gn_5_52020' => 'lsa', 'Lsat_1_v5_gn_5_9401' => 'lsa', 'Manes.03G192700' => 'mes', 'Manes.08G120100' => 'mes', 'Manes.09G168100' => 'mes', 'Manes.15G014200' => 'mes', 'Mapoly0051s0005' => 'mpo', 'MBI07_g07555_MAGBIO' => 'mbi', 'MBI19_g24000_MAGBIO' => 'mbi', 'MCO11G921' => 'mco', 'MD04G1203600' => 'mdo', 'MD12G1217400' => 'mdo', 'MD13G1170700' => 'mdo', 'MD16G1172400' => 'mdo', 'Medtr0392s0010' => 'mtr', 'Medtr1g083050' => 'mtr', 'Medtr4g119400' => 'mtr', 'Medtr7g113330' => 'mtr', 'MELO3C021347.2' => 'cme', 'Migut.G00181' => 'egut', 'Migut.N00105' => 'egut', 'MSTRG.20427' => 'ama', 'MSTRG.21804' => 'ama', 'MSTRG.22820' => 'ama', 'MSTRG.24787' => 'ama', 'MSTRG.3932' => 'ama', 'Nitab4.5_0000137g0040' => 'nta', 'Nitab4.5_0000784g0070' => 'nta', 'Nitab4.5_0000976g0160' => 'nta', 'Nitab4.5_0003156g0030' => 'nta', 'Nitab4.5_0004985g0050' => 'nta', 'Nitab4.5_0013689g0010' => 'nta', 'Nn3g21381' => 'nnu', 'Nn4g22092' => 'nnu', 'Nn4g25934' => 'nnu', 'Oeu012103.1' => 'oeu', 'Oeu017205.1' => 'oeu', 'Oeu021110.1' => 'oeu', 'Oeu026306.3' => 'oeu', 'Oeu029258.2' => 'oeu', 'Os03g0856400' => 'osa', 'Os04g0401300' => 'osa', 'Peaxi162Scf00037g00716' => 'pax', 'Peaxi162Scf00314g00751' => 'pax', 'Peaxi162Scf00386g00413' => 'pax', 'PGR004G2575' => 'pgr', 'PGR031G1313' => 'pgr', 'PGSC0003DMG400014170' => 'stu', 'PGSC0003DMG401010657' => 'stu', 'PGSC0003DMG402010657' => 'stu', 'PGSC0003DMG402024742' => 'stu', 'Phvul.003G103000' => 'pvu', 'Phvul.006G091100' => 'pvu', 'Phvul.007G179400' => 'pvu', 'Phvul.009G246000' => 'pvu', 'Potri.005G028800' => 'ptr', 'Potri.005G029300' => 'ptr', 'Potri.005G029900' => 'ptr', 'Potri.008G216800' => 'ptr', 'Potri.010G023500' => 'ptr', 'Potri.013G020400' => 'ptr', 'Pp3c11_18670' => 'ppa', 'Pp3c7_4960' => 'ppa', 'Pp3c7_5010' => 'ppa', 'PRCOL_00002888' => 'pco', 'Prupe.1G139100' => 'ppe', 'Prupe.6G323700' => 'ppe', 'Psat0s2406g0160' => 'psa', 'Psat0s2745g0120' => 'psa', 'Psat1g153160' => 'psa', 'Psat4g027920' => 'psa', 'Psat4g027960' => 'psa', 'Psat5g008040' => 'psa', 'PSO017G3656' => 'pso', 'PSO170G1318' => 'pso', 'PSO210G0979' => 'pso', 'PSO210G3547' => 'pso', 'PSO478G1222' => 'pso', 'PSO832G1373' => 'pso', 'QL03p007418' => 'qlo', 'QL03p007686' => 'qlo', 'QL06p008290' => 'qlo', 'RcHm_v2.0_Chr3g0455191' => 'rch', 'RcHm_v2.0_Chr4g0421631' => 'rch', 'Rhsim04G0219500' => 'rsi', 'Rhsim07G0186000' => 'rsi', 'Rhsim12G0182200' => 'rsi', 'Sabra05G0033400' => 'sbr', 'Sabra10G0015300' => 'sbr', 'Sabra13G0022900' => 'sbr', 'SalBow2G1100' => 'sbo', 'SalBow2G1814' => 'sbo', 'SalBow5G0615' => 'sbo', 'SalBow7G3540' => 'sbo', 'Sc06g0003260' => 'sci', 'Sc09g0003110' => 'sci', 'Sc16g0008500' => 'sci', 'Sc19g0005050' => 'sci', 'Sed0013858' => 'sed', 'Sed0025025' => 'sed', 'SEGI_17247' => 'sgi', 'SEGI_23681' => 'sgi', 'SGA_v2.0_scaffold175G39291' => 'sas', 'SGA_v2.0_scaffold428G51520' => 'sas', 'SMO244G0080' => 'smo', 'Solyc01g067590.3' => 'sly', 'Solyc01g099280.3' => 'sly', 'Solyc03g118070.3' => 'sly', 'Sopen01g029540' => 'spe', 'Sopen01g042830' => 'spe', 'Sopen03g036970' => 'spe', 'Sp1g07630' => 'spa', 'TAR362G0013' => 'tar', 'TAR374G1492' => 'tar', 'TAR622G0599' => 'tar', 'TAR633G2083' => 'tar', 'THA.LOC104802551' => 'tha', 'THA.LOC104805883' => 'tha', 'THA.LOC104820842' => 'tha', 'THA.LOC104821769' => 'tha', 'Thecc.04G282100' => 'tca', 'Thecc.05G309800' => 'tca', 'Thhalv10007484m.g' => 'esa', 'TPR.G14622' => 'tpr', 'TPR.G31152' => 'tpr', 'TPR.G33182' => 'tpr', 'TPR.G5240' => 'tpr', 'TWI09G1206' => 'twi', 'TWI12G1293' => 'twi', 'TWI36G1555' => 'twi', 'TWI53G0864' => 'twi', 'TWI56G0250' => 'twi', 'unitig_37.g12391' => 'ugi', 'unitig_46.g18687' => 'ugi', 'vmacro04971' => 'vma', 'vmacro08124' => 'vma', 'vmacro16764' => 'vma', 'vmacro22209' => 'vma', 'VMungo0540G1377' => 'vmu', 'VMungo0720G0241' => 'vmu', 'VMungo0720G2177' => 'vmu', 'VMungo1215G2585' => 'vmu', 'VMungo1309G1195' => 'vmu', 'Zm00001eb045310' => 'zma', 'Zm00001eb064940' => 'zma', 'Zm00001eb084670' => 'zma', 'Zm00001eb130380' => 'zma', 'Zm00001eb210470' => 'zma', 'Zm00001eb271300' => 'zma', 'Zm00001eb345470' => 'zma', 'Zm00001eb357500' => 'zma', 'Zm00001eb421550' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001942', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001942' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '340', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001942' ) ), 'genes' => array( 'A06p05840' => 'bna', 'A08p34850' => 'bna', 'A09p65620' => 'bna', 'Aa31sc136G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.835' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.170' => 'aag', 'Actinidia01462' => 'ach', 'Actinidia05685' => 'ach', 'Actinidia08915' => 'ach', 'Actinidia23651' => 'ach', 'Actinidia36847' => 'ach', 'Actinidia40250' => 'ach', 'Actinidia40251' => 'ach', 'Ah.04g160360' => 'amhyb', 'Ah.06g189480' => 'amhyb', 'AL1G19450' => 'aly', 'Aqoxy2G03051' => 'aox', 'Aqoxy5G00657' => 'aox', 'Aqoxy5G03017' => 'aox', 'Aqoxy5G03018' => 'aox', 'Aqoxy6G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B5S4LJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX6P8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML1F2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7ZVQ' => 'arhy', 'AT1G09020' => 'ath', 'ATR0706G230' => 'atr', 'Atru.chr2.359' => 'acertr', 'Atru.chr4.2801' => 'acertr', 'Atru.chr4.2802' => 'acertr', 'AUR62000807' => 'cqu', 'AUR62005161' => 'cqu', 'BcaB07g34119' => 'bca', 'BcaC05g24753' => 'bca', 'BcaC07g38469' => 'bca', 'BcaC07g41908' => 'bca', 'BolC5t29460H' => 'bol', 'BolC8t48881H' => 'bol', 'BolC8t52498H' => 'bol', 'BraA06t23794Z' => 'bra', 'BraA08t35396Z' => 'bra', 'BraA09t41906Z' => 'bra', 'C05p07050' => 'bna', 'C08p12410' => 'bna', 'C08p49700' => 'bna', 'CAN.G1008.45' => 'can', 'CAN.G1034.24' => 'can', 'CAN.G223.18' => 'can', 'CANSAT54G0129' => 'cansat', 'CANSAT78G2473' => 'cansat', 'CARHR008910' => 'chi', 'Carub.0001s0834' => 'cru', 'Ca_05810_v3' => 'car', 'Ca_10117_v3' => 'car', 'Ca_10137_v3' => 'car', 'Ca_21533_v3' => 'car', 'CBR_g22060' => 'cbr', 'Cc02_g33290' => 'ccan', 'Cc03_g02060' => 'ccan', 'Cc04_g05690' => 'ccan', 'CDE01G0552' => 'cde', 'CDE05G2787' => 'cde', 'CDE12G0773' => 'cde', 'Cfa006602' => 'cfa', 'Cfa015367' => 'cfa', 'Cfa025937' => 'cfa', 'Ciclev10000984m.g' => 'ccl', 'Ciclev10004799m.g' => 'ccl', 'CiPaw.01G150500' => 'cil', 'CiPaw.02G084500' => 'cil', 'CiPaw.07G019000' => 'cil', 'CiPaw.08G163800' => 'cil', 'CiPaw.08G172600' => 'cil', 'ClCG06G005280' => 'cla', 'COL.COLO4_13899' => 'col', 'Cpa.g.sc16.154' => 'cpa', 'Cpa.g.sc16.156' => 'cpa', 'Cpa.g.sc48.71' => 'cpa', 'Cre12.g484350' => 'cre', 'CsaV3_6G017330' => 'csa', 'CSS0002596' => 'camsi', 'CSS0007501' => 'camsi', 'CSS0019245' => 'camsi', 'CSS0026972' => 'camsi', 'CSS0029143' => 'camsi', 'CSS0029500' => 'camsi', 'CSS0031005' => 'camsi', 'CSS0040291' => 'camsi', 'CSS0043577' => 'camsi', 'CSS0043685' => 'camsi', 'CSS0045503' => 'camsi', 'DCAR_024559' => 'dca', 'DCAR_025635' => 'dca', 'DCAR_027085' => 'dca', 'DCAR_027086' => 'dca', 'DCAR_030540' => 'dca', 'Dinv13702' => 'din', 'Dinv30776' => 'din', 'Dinv38305' => 'din', 'Dinv40303' => 'din', 'Dinv44399' => 'din', 'Dinv44400' => 'din', 'Duzib052G0601' => 'dzi', 'Duzib128G0464' => 'dzi', 'Duzib151G0890' => 'dzi', 'Duzib177G0180' => 'dzi', 'Duzib212G0315' => 'dzi', 'ECA234G0557' => 'eca', 'ECA240G3320' => 'eca', 'ECA247G3703' => 'eca', 'EL10Ac4g09404' => 'bvu', 'Eucgr.H03882' => 'egr', 'FAN02G4595' => 'fan', 'FAN05G0428' => 'fan', 'FAN07G0952' => 'fan', 'FAN09G2447' => 'fan', 'FAN11G3583' => 'fan', 'FAN12G0743' => 'fan', 'FAN12G1350' => 'fan', 'FAN14G1558' => 'fan', 'FAN16G1520' => 'fan', 'FAN17G0187' => 'fan', 'FAN22G1723' => 'fan', 'FAN25G3255' => 'fan', 'FvH4_3g04200' => 'fve', 'FvH4_4g17690' => 'fve', 'FvH4_6g06180' => 'fve', 'Glyma.03G236900' => 'gma', 'Glyma.07G249700' => 'gma', 'Glyma.09G046800' => 'gma', 'Glyma.10G153700' => 'gma', 'Glyma.15G154300' => 'gma', 'Glyma.17G024700' => 'gma', 'Glyma.19G234600' => 'gma', 'Glyma.20G234600' => 'gma', 'Gohir.A02G048300' => 'ghi', 'Gohir.A08G209700' => 'ghi', 'Gohir.A09G240000' => 'ghi', 'Gohir.A10G162700' => 'ghi', 'Gohir.A11G265800' => 'ghi', 'Gohir.A11G295200' => 'ghi', 'Gohir.D02G053400' => 'ghi', 'Gohir.D08G226600' => 'ghi', 'Gohir.D09G240800' => 'ghi', 'Gohir.D10G169100' => 'ghi', 'Gohir.D11G275900' => 'ghi', 'Gohir.D11G311700' => 'ghi', 'Gorai.004G240500' => 'gra', 'Gorai.005G059200' => 'gra', 'Gorai.006G264100' => 'gra', 'Gorai.007G298100' => 'gra', 'Gorai.007G342100' => 'gra', 'Gorai.011G188600' => 'gra', 'GSVIVG01000091001' => 'vvi', 'GSVIVG01017767001' => 'vvi', 'HanXRQChr03g0080891' => 'han', 'HanXRQChr03g0090621' => 'han', 'HanXRQChr09g0262571' => 'han', 'HanXRQChr10g0297811' => 'han', 'HanXRQChr10g0316001' => 'han', 'HanXRQChr13g0410101' => 'han', 'Haze_01235' => 'cav', 'Haze_04175' => 'cav', 'Hma1.2p1_0698F.1_g205330' => 'hma', 'Hma1.2p1_1334F.1_g276320' => 'hma', 'HPP92_010659' => 'vpl', 'HPP92_010705' => 'vpl', 'HPP92_011822' => 'vpl', 'HPP92_013704' => 'vpl', 'Hund07079' => 'sun', 'Lalb_Chr07g0177641' => 'lal', 'Lalb_Chr15g0077251' => 'lal', 'Lalb_Chr18g0045681' => 'lal', 'Lalb_Chr18g0051801' => 'lal', 'Lalb_Chr20g0114431' => 'lal', 'Lj1g0019878' => 'lja', 'Lj4g0019649' => 'lja', 'Lj5A504G36' => 'lonja', 'Lj5A504G37' => 'lonja', 'Lj5A85T110' => 'lonja', 'Lj5g0015789' => 'lja', 'Lj5g0026589' => 'lja', 'Lj6A672G26' => 'lonja', 'Lj6g0006467' => 'lja', 'Lju1819C2G19' => 'lonja', 'Lsat_1_v5_gn_1_30080' => 'lsa', 'Lsat_1_v5_gn_5_105841' => 'lsa', 'Lsat_1_v5_gn_5_146681' => 'lsa', 'Lsat_1_v5_gn_5_52020' => 'lsa', 'Lsat_1_v5_gn_5_9401' => 'lsa', 'Manes.03G192700' => 'mes', 'Manes.08G120100' => 'mes', 'Manes.09G168100' => 'mes', 'Manes.15G014200' => 'mes', 'Mapoly0051s0005' => 'mpo', 'MBI07_g07555_MAGBIO' => 'mbi', 'MBI19_g24000_MAGBIO' => 'mbi', 'MCO11G921' => 'mco', 'MD04G1203600' => 'mdo', 'MD12G1217400' => 'mdo', 'MD13G1170700' => 'mdo', 'MD16G1172400' => 'mdo', 'Medtr0392s0010' => 'mtr', 'Medtr1g083050' => 'mtr', 'Medtr4g119400' => 'mtr', 'Medtr7g113330' => 'mtr', 'MELO3C021347.2' => 'cme', 'Migut.G00181' => 'egut', 'Migut.N00105' => 'egut', 'MSTRG.20427' => 'ama', 'MSTRG.21804' => 'ama', 'MSTRG.22820' => 'ama', 'MSTRG.24787' => 'ama', 'MSTRG.3932' => 'ama', 'Nitab4.5_0000137g0040' => 'nta', 'Nitab4.5_0000784g0070' => 'nta', 'Nitab4.5_0000976g0160' => 'nta', 'Nitab4.5_0003156g0030' => 'nta', 'Nitab4.5_0004985g0050' => 'nta', 'Nitab4.5_0013689g0010' => 'nta', 'Nn3g21381' => 'nnu', 'Nn4g22092' => 'nnu', 'Nn4g25934' => 'nnu', 'Oeu012103.1' => 'oeu', 'Oeu017205.1' => 'oeu', 'Oeu021110.1' => 'oeu', 'Oeu026306.3' => 'oeu', 'Oeu029258.2' => 'oeu', 'Os03g0856400' => 'osa', 'Os04g0401300' => 'osa', 'Peaxi162Scf00037g00716' => 'pax', 'Peaxi162Scf00314g00751' => 'pax', 'Peaxi162Scf00386g00413' => 'pax', 'PGR004G2575' => 'pgr', 'PGR031G1313' => 'pgr', 'PGSC0003DMG400014170' => 'stu', 'PGSC0003DMG401010657' => 'stu', 'PGSC0003DMG402010657' => 'stu', 'PGSC0003DMG402024742' => 'stu', 'Phvul.003G103000' => 'pvu', 'Phvul.006G091100' => 'pvu', 'Phvul.007G179400' => 'pvu', 'Phvul.009G246000' => 'pvu', 'Potri.005G028800' => 'ptr', 'Potri.005G029300' => 'ptr', 'Potri.005G029900' => 'ptr', 'Potri.008G216800' => 'ptr', 'Potri.010G023500' => 'ptr', 'Potri.013G020400' => 'ptr', 'Pp3c11_18670' => 'ppa', 'Pp3c7_4960' => 'ppa', 'Pp3c7_5010' => 'ppa', 'PRCOL_00002888' => 'pco', 'Prupe.1G139100' => 'ppe', 'Prupe.6G323700' => 'ppe', 'Psat0s2406g0160' => 'psa', 'Psat0s2745g0120' => 'psa', 'Psat1g153160' => 'psa', 'Psat4g027920' => 'psa', 'Psat4g027960' => 'psa', 'Psat5g008040' => 'psa', 'PSO017G3656' => 'pso', 'PSO170G1318' => 'pso', 'PSO210G0979' => 'pso', 'PSO210G3547' => 'pso', 'PSO478G1222' => 'pso', 'PSO832G1373' => 'pso', 'QL03p007418' => 'qlo', 'QL03p007686' => 'qlo', 'QL06p008290' => 'qlo', 'RcHm_v2.0_Chr3g0455191' => 'rch', 'RcHm_v2.0_Chr4g0421631' => 'rch', 'Rhsim04G0219500' => 'rsi', 'Rhsim07G0186000' => 'rsi', 'Rhsim12G0182200' => 'rsi', 'Sabra05G0033400' => 'sbr', 'Sabra10G0015300' => 'sbr', 'Sabra13G0022900' => 'sbr', 'SalBow2G1100' => 'sbo', 'SalBow2G1814' => 'sbo', 'SalBow5G0615' => 'sbo', 'SalBow7G3540' => 'sbo', 'Sc06g0003260' => 'sci', 'Sc09g0003110' => 'sci', 'Sc16g0008500' => 'sci', 'Sc19g0005050' => 'sci', 'Sed0013858' => 'sed', 'Sed0025025' => 'sed', 'SEGI_17247' => 'sgi', 'SEGI_23681' => 'sgi', 'SGA_v2.0_scaffold175G39291' => 'sas', 'SGA_v2.0_scaffold428G51520' => 'sas', 'SMO244G0080' => 'smo', 'Solyc01g067590.3' => 'sly', 'Solyc01g099280.3' => 'sly', 'Solyc03g118070.3' => 'sly', 'Sopen01g029540' => 'spe', 'Sopen01g042830' => 'spe', 'Sopen03g036970' => 'spe', 'Sp1g07630' => 'spa', 'TAR362G0013' => 'tar', 'TAR374G1492' => 'tar', 'TAR622G0599' => 'tar', 'TAR633G2083' => 'tar', 'THA.LOC104802551' => 'tha', 'THA.LOC104805883' => 'tha', 'THA.LOC104820842' => 'tha', 'THA.LOC104821769' => 'tha', 'Thecc.04G282100' => 'tca', 'Thecc.05G309800' => 'tca', 'Thhalv10007484m.g' => 'esa', 'TPR.G14622' => 'tpr', 'TPR.G31152' => 'tpr', 'TPR.G33182' => 'tpr', 'TPR.G5240' => 'tpr', 'TWI09G1206' => 'twi', 'TWI12G1293' => 'twi', 'TWI36G1555' => 'twi', 'TWI53G0864' => 'twi', 'TWI56G0250' => 'twi', 'unitig_37.g12391' => 'ugi', 'unitig_46.g18687' => 'ugi', 'vmacro04971' => 'vma', 'vmacro08124' => 'vma', 'vmacro16764' => 'vma', 'vmacro22209' => 'vma', 'VMungo0540G1377' => 'vmu', 'VMungo0720G0241' => 'vmu', 'VMungo0720G2177' => 'vmu', 'VMungo1215G2585' => 'vmu', 'VMungo1309G1195' => 'vmu', 'Zm00001eb045310' => 'zma', 'Zm00001eb064940' => 'zma', 'Zm00001eb084670' => 'zma', 'Zm00001eb130380' => 'zma', 'Zm00001eb210470' => 'zma', 'Zm00001eb271300' => 'zma', 'Zm00001eb345470' => 'zma', 'Zm00001eb357500' => 'zma', 'Zm00001eb421550' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001942' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001942' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001942' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001942' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '340', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A06p05840' => 'bna', 'A08p34850' => 'bna', 'A09p65620' => 'bna', 'Aa31sc136G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.835' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.170' => 'aag', 'Actinidia01462' => 'ach', 'Actinidia05685' => 'ach', 'Actinidia08915' => 'ach', 'Actinidia23651' => 'ach', 'Actinidia36847' => 'ach', 'Actinidia40250' => 'ach', 'Actinidia40251' => 'ach', 'Ah.04g160360' => 'amhyb', 'Ah.06g189480' => 'amhyb', 'AL1G19450' => 'aly', 'Aqoxy2G03051' => 'aox', 'Aqoxy5G00657' => 'aox', 'Aqoxy5G03017' => 'aox', 'Aqoxy5G03018' => 'aox', 'Aqoxy6G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B5S4LJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX6P8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML1F2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7ZVQ' => 'arhy', 'AT1G09020' => 'ath', 'ATR0706G230' => 'atr', 'Atru.chr2.359' => 'acertr', 'Atru.chr4.2801' => 'acertr', 'Atru.chr4.2802' => 'acertr', 'AUR62000807' => 'cqu', 'AUR62005161' => 'cqu', 'BcaB07g34119' => 'bca', 'BcaC05g24753' => 'bca', 'BcaC07g38469' => 'bca', 'BcaC07g41908' => 'bca', 'BolC5t29460H' => 'bol', 'BolC8t48881H' => 'bol', 'BolC8t52498H' => 'bol', 'BraA06t23794Z' => 'bra', 'BraA08t35396Z' => 'bra', 'BraA09t41906Z' => 'bra', 'C05p07050' => 'bna', 'C08p12410' => 'bna', 'C08p49700' => 'bna', 'CAN.G1008.45' => 'can', 'CAN.G1034.24' => 'can', 'CAN.G223.18' => 'can', 'CANSAT54G0129' => 'cansat', 'CANSAT78G2473' => 'cansat', 'CARHR008910' => 'chi', 'Carub.0001s0834' => 'cru', 'Ca_05810_v3' => 'car', 'Ca_10117_v3' => 'car', 'Ca_10137_v3' => 'car', 'Ca_21533_v3' => 'car', 'CBR_g22060' => 'cbr', 'Cc02_g33290' => 'ccan', 'Cc03_g02060' => 'ccan', 'Cc04_g05690' => 'ccan', 'CDE01G0552' => 'cde', 'CDE05G2787' => 'cde', 'CDE12G0773' => 'cde', 'Cfa006602' => 'cfa', 'Cfa015367' => 'cfa', 'Cfa025937' => 'cfa', 'Ciclev10000984m.g' => 'ccl', 'Ciclev10004799m.g' => 'ccl', 'CiPaw.01G150500' => 'cil', 'CiPaw.02G084500' => 'cil', 'CiPaw.07G019000' => 'cil', 'CiPaw.08G163800' => 'cil', 'CiPaw.08G172600' => 'cil', 'ClCG06G005280' => 'cla', 'COL.COLO4_13899' => 'col', 'Cpa.g.sc16.154' => 'cpa', 'Cpa.g.sc16.156' => 'cpa', 'Cpa.g.sc48.71' => 'cpa', 'Cre12.g484350' => 'cre', 'CsaV3_6G017330' => 'csa', 'CSS0002596' => 'camsi', 'CSS0007501' => 'camsi', 'CSS0019245' => 'camsi', 'CSS0026972' => 'camsi', 'CSS0029143' => 'camsi', 'CSS0029500' => 'camsi', 'CSS0031005' => 'camsi', 'CSS0040291' => 'camsi', 'CSS0043577' => 'camsi', 'CSS0043685' => 'camsi', 'CSS0045503' => 'camsi', 'DCAR_024559' => 'dca', 'DCAR_025635' => 'dca', 'DCAR_027085' => 'dca', 'DCAR_027086' => 'dca', 'DCAR_030540' => 'dca', 'Dinv13702' => 'din', 'Dinv30776' => 'din', 'Dinv38305' => 'din', 'Dinv40303' => 'din', 'Dinv44399' => 'din', 'Dinv44400' => 'din', 'Duzib052G0601' => 'dzi', 'Duzib128G0464' => 'dzi', 'Duzib151G0890' => 'dzi', 'Duzib177G0180' => 'dzi', 'Duzib212G0315' => 'dzi', 'ECA234G0557' => 'eca', 'ECA240G3320' => 'eca', 'ECA247G3703' => 'eca', 'EL10Ac4g09404' => 'bvu', 'Eucgr.H03882' => 'egr', 'FAN02G4595' => 'fan', 'FAN05G0428' => 'fan', 'FAN07G0952' => 'fan', 'FAN09G2447' => 'fan', 'FAN11G3583' => 'fan', 'FAN12G0743' => 'fan', 'FAN12G1350' => 'fan', 'FAN14G1558' => 'fan', 'FAN16G1520' => 'fan', 'FAN17G0187' => 'fan', 'FAN22G1723' => 'fan', 'FAN25G3255' => 'fan', 'FvH4_3g04200' => 'fve', 'FvH4_4g17690' => 'fve', 'FvH4_6g06180' => 'fve', 'Glyma.03G236900' => 'gma', 'Glyma.07G249700' => 'gma', 'Glyma.09G046800' => 'gma', 'Glyma.10G153700' => 'gma', 'Glyma.15G154300' => 'gma', 'Glyma.17G024700' => 'gma', 'Glyma.19G234600' => 'gma', 'Glyma.20G234600' => 'gma', 'Gohir.A02G048300' => 'ghi', 'Gohir.A08G209700' => 'ghi', 'Gohir.A09G240000' => 'ghi', 'Gohir.A10G162700' => 'ghi', 'Gohir.A11G265800' => 'ghi', 'Gohir.A11G295200' => 'ghi', 'Gohir.D02G053400' => 'ghi', 'Gohir.D08G226600' => 'ghi', 'Gohir.D09G240800' => 'ghi', 'Gohir.D10G169100' => 'ghi', 'Gohir.D11G275900' => 'ghi', 'Gohir.D11G311700' => 'ghi', 'Gorai.004G240500' => 'gra', 'Gorai.005G059200' => 'gra', 'Gorai.006G264100' => 'gra', 'Gorai.007G298100' => 'gra', 'Gorai.007G342100' => 'gra', 'Gorai.011G188600' => 'gra', 'GSVIVG01000091001' => 'vvi', 'GSVIVG01017767001' => 'vvi', 'HanXRQChr03g0080891' => 'han', 'HanXRQChr03g0090621' => 'han', 'HanXRQChr09g0262571' => 'han', 'HanXRQChr10g0297811' => 'han', 'HanXRQChr10g0316001' => 'han', 'HanXRQChr13g0410101' => 'han', 'Haze_01235' => 'cav', 'Haze_04175' => 'cav', 'Hma1.2p1_0698F.1_g205330' => 'hma', 'Hma1.2p1_1334F.1_g276320' => 'hma', 'HPP92_010659' => 'vpl', 'HPP92_010705' => 'vpl', 'HPP92_011822' => 'vpl', 'HPP92_013704' => 'vpl', 'Hund07079' => 'sun', 'Lalb_Chr07g0177641' => 'lal', 'Lalb_Chr15g0077251' => 'lal', 'Lalb_Chr18g0045681' => 'lal', 'Lalb_Chr18g0051801' => 'lal', 'Lalb_Chr20g0114431' => 'lal', 'Lj1g0019878' => 'lja', 'Lj4g0019649' => 'lja', 'Lj5A504G36' => 'lonja', 'Lj5A504G37' => 'lonja', 'Lj5A85T110' => 'lonja', 'Lj5g0015789' => 'lja', 'Lj5g0026589' => 'lja', 'Lj6A672G26' => 'lonja', 'Lj6g0006467' => 'lja', 'Lju1819C2G19' => 'lonja', 'Lsat_1_v5_gn_1_30080' => 'lsa', 'Lsat_1_v5_gn_5_105841' => 'lsa', 'Lsat_1_v5_gn_5_146681' => 'lsa', 'Lsat_1_v5_gn_5_52020' => 'lsa', 'Lsat_1_v5_gn_5_9401' => 'lsa', 'Manes.03G192700' => 'mes', 'Manes.08G120100' => 'mes', 'Manes.09G168100' => 'mes', 'Manes.15G014200' => 'mes', 'Mapoly0051s0005' => 'mpo', 'MBI07_g07555_MAGBIO' => 'mbi', 'MBI19_g24000_MAGBIO' => 'mbi', 'MCO11G921' => 'mco', 'MD04G1203600' => 'mdo', 'MD12G1217400' => 'mdo', 'MD13G1170700' => 'mdo', 'MD16G1172400' => 'mdo', 'Medtr0392s0010' => 'mtr', 'Medtr1g083050' => 'mtr', 'Medtr4g119400' => 'mtr', 'Medtr7g113330' => 'mtr', 'MELO3C021347.2' => 'cme', 'Migut.G00181' => 'egut', 'Migut.N00105' => 'egut', 'MSTRG.20427' => 'ama', 'MSTRG.21804' => 'ama', 'MSTRG.22820' => 'ama', 'MSTRG.24787' => 'ama', 'MSTRG.3932' => 'ama', 'Nitab4.5_0000137g0040' => 'nta', 'Nitab4.5_0000784g0070' => 'nta', 'Nitab4.5_0000976g0160' => 'nta', 'Nitab4.5_0003156g0030' => 'nta', 'Nitab4.5_0004985g0050' => 'nta', 'Nitab4.5_0013689g0010' => 'nta', 'Nn3g21381' => 'nnu', 'Nn4g22092' => 'nnu', 'Nn4g25934' => 'nnu', 'Oeu012103.1' => 'oeu', 'Oeu017205.1' => 'oeu', 'Oeu021110.1' => 'oeu', 'Oeu026306.3' => 'oeu', 'Oeu029258.2' => 'oeu', 'Os03g0856400' => 'osa', 'Os04g0401300' => 'osa', 'Peaxi162Scf00037g00716' => 'pax', 'Peaxi162Scf00314g00751' => 'pax', 'Peaxi162Scf00386g00413' => 'pax', 'PGR004G2575' => 'pgr', 'PGR031G1313' => 'pgr', 'PGSC0003DMG400014170' => 'stu', 'PGSC0003DMG401010657' => 'stu', 'PGSC0003DMG402010657' => 'stu', 'PGSC0003DMG402024742' => 'stu', 'Phvul.003G103000' => 'pvu', 'Phvul.006G091100' => 'pvu', 'Phvul.007G179400' => 'pvu', 'Phvul.009G246000' => 'pvu', 'Potri.005G028800' => 'ptr', 'Potri.005G029300' => 'ptr', 'Potri.005G029900' => 'ptr', 'Potri.008G216800' => 'ptr', 'Potri.010G023500' => 'ptr', 'Potri.013G020400' => 'ptr', 'Pp3c11_18670' => 'ppa', 'Pp3c7_4960' => 'ppa', 'Pp3c7_5010' => 'ppa', 'PRCOL_00002888' => 'pco', 'Prupe.1G139100' => 'ppe', 'Prupe.6G323700' => 'ppe', 'Psat0s2406g0160' => 'psa', 'Psat0s2745g0120' => 'psa', 'Psat1g153160' => 'psa', 'Psat4g027920' => 'psa', 'Psat4g027960' => 'psa', 'Psat5g008040' => 'psa', 'PSO017G3656' => 'pso', 'PSO170G1318' => 'pso', 'PSO210G0979' => 'pso', 'PSO210G3547' => 'pso', 'PSO478G1222' => 'pso', 'PSO832G1373' => 'pso', 'QL03p007418' => 'qlo', 'QL03p007686' => 'qlo', 'QL06p008290' => 'qlo', 'RcHm_v2.0_Chr3g0455191' => 'rch', 'RcHm_v2.0_Chr4g0421631' => 'rch', 'Rhsim04G0219500' => 'rsi', 'Rhsim07G0186000' => 'rsi', 'Rhsim12G0182200' => 'rsi', 'Sabra05G0033400' => 'sbr', 'Sabra10G0015300' => 'sbr', 'Sabra13G0022900' => 'sbr', 'SalBow2G1100' => 'sbo', 'SalBow2G1814' => 'sbo', 'SalBow5G0615' => 'sbo', 'SalBow7G3540' => 'sbo', 'Sc06g0003260' => 'sci', 'Sc09g0003110' => 'sci', 'Sc16g0008500' => 'sci', 'Sc19g0005050' => 'sci', 'Sed0013858' => 'sed', 'Sed0025025' => 'sed', 'SEGI_17247' => 'sgi', 'SEGI_23681' => 'sgi', 'SGA_v2.0_scaffold175G39291' => 'sas', 'SGA_v2.0_scaffold428G51520' => 'sas', 'SMO244G0080' => 'smo', 'Solyc01g067590.3' => 'sly', 'Solyc01g099280.3' => 'sly', 'Solyc03g118070.3' => 'sly', 'Sopen01g029540' => 'spe', 'Sopen01g042830' => 'spe', 'Sopen03g036970' => 'spe', 'Sp1g07630' => 'spa', 'TAR362G0013' => 'tar', 'TAR374G1492' => 'tar', 'TAR622G0599' => 'tar', 'TAR633G2083' => 'tar', 'THA.LOC104802551' => 'tha', 'THA.LOC104805883' => 'tha', 'THA.LOC104820842' => 'tha', 'THA.LOC104821769' => 'tha', 'Thecc.04G282100' => 'tca', 'Thecc.05G309800' => 'tca', 'Thhalv10007484m.g' => 'esa', 'TPR.G14622' => 'tpr', 'TPR.G31152' => 'tpr', 'TPR.G33182' => 'tpr', 'TPR.G5240' => 'tpr', 'TWI09G1206' => 'twi', 'TWI12G1293' => 'twi', 'TWI36G1555' => 'twi', 'TWI53G0864' => 'twi', 'TWI56G0250' => 'twi', 'unitig_37.g12391' => 'ugi', 'unitig_46.g18687' => 'ugi', 'vmacro04971' => 'vma', 'vmacro08124' => 'vma', 'vmacro16764' => 'vma', 'vmacro22209' => 'vma', 'VMungo0540G1377' => 'vmu', 'VMungo0720G0241' => 'vmu', 'VMungo0720G2177' => 'vmu', 'VMungo1215G2585' => 'vmu', 'VMungo1309G1195' => 'vmu', 'Zm00001eb045310' => 'zma', 'Zm00001eb064940' => 'zma', 'Zm00001eb084670' => 'zma', 'Zm00001eb130380' => 'zma', 'Zm00001eb210470' => 'zma', 'Zm00001eb271300' => 'zma', 'Zm00001eb345470' => 'zma', 'Zm00001eb357500' => 'zma', 'Zm00001eb421550' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001942', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001942' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '340', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001942' ) ), 'genes' => array( 'A06p05840' => 'bna', 'A08p34850' => 'bna', 'A09p65620' => 'bna', 'Aa31sc136G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.835' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.170' => 'aag', 'Actinidia01462' => 'ach', 'Actinidia05685' => 'ach', 'Actinidia08915' => 'ach', 'Actinidia23651' => 'ach', 'Actinidia36847' => 'ach', 'Actinidia40250' => 'ach', 'Actinidia40251' => 'ach', 'Ah.04g160360' => 'amhyb', 'Ah.06g189480' => 'amhyb', 'AL1G19450' => 'aly', 'Aqoxy2G03051' => 'aox', 'Aqoxy5G00657' => 'aox', 'Aqoxy5G03017' => 'aox', 'Aqoxy5G03018' => 'aox', 'Aqoxy6G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B5S4LJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX6P8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML1F2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7ZVQ' => 'arhy', 'AT1G09020' => 'ath', 'ATR0706G230' => 'atr', 'Atru.chr2.359' => 'acertr', 'Atru.chr4.2801' => 'acertr', 'Atru.chr4.2802' => 'acertr', 'AUR62000807' => 'cqu', 'AUR62005161' => 'cqu', 'BcaB07g34119' => 'bca', 'BcaC05g24753' => 'bca', 'BcaC07g38469' => 'bca', 'BcaC07g41908' => 'bca', 'BolC5t29460H' => 'bol', 'BolC8t48881H' => 'bol', 'BolC8t52498H' => 'bol', 'BraA06t23794Z' => 'bra', 'BraA08t35396Z' => 'bra', 'BraA09t41906Z' => 'bra', 'C05p07050' => 'bna', 'C08p12410' => 'bna', 'C08p49700' => 'bna', 'CAN.G1008.45' => 'can', 'CAN.G1034.24' => 'can', 'CAN.G223.18' => 'can', 'CANSAT54G0129' => 'cansat', 'CANSAT78G2473' => 'cansat', 'CARHR008910' => 'chi', 'Carub.0001s0834' => 'cru', 'Ca_05810_v3' => 'car', 'Ca_10117_v3' => 'car', 'Ca_10137_v3' => 'car', 'Ca_21533_v3' => 'car', 'CBR_g22060' => 'cbr', 'Cc02_g33290' => 'ccan', 'Cc03_g02060' => 'ccan', 'Cc04_g05690' => 'ccan', 'CDE01G0552' => 'cde', 'CDE05G2787' => 'cde', 'CDE12G0773' => 'cde', 'Cfa006602' => 'cfa', 'Cfa015367' => 'cfa', 'Cfa025937' => 'cfa', 'Ciclev10000984m.g' => 'ccl', 'Ciclev10004799m.g' => 'ccl', 'CiPaw.01G150500' => 'cil', 'CiPaw.02G084500' => 'cil', 'CiPaw.07G019000' => 'cil', 'CiPaw.08G163800' => 'cil', 'CiPaw.08G172600' => 'cil', 'ClCG06G005280' => 'cla', 'COL.COLO4_13899' => 'col', 'Cpa.g.sc16.154' => 'cpa', 'Cpa.g.sc16.156' => 'cpa', 'Cpa.g.sc48.71' => 'cpa', 'Cre12.g484350' => 'cre', 'CsaV3_6G017330' => 'csa', 'CSS0002596' => 'camsi', 'CSS0007501' => 'camsi', 'CSS0019245' => 'camsi', 'CSS0026972' => 'camsi', 'CSS0029143' => 'camsi', 'CSS0029500' => 'camsi', 'CSS0031005' => 'camsi', 'CSS0040291' => 'camsi', 'CSS0043577' => 'camsi', 'CSS0043685' => 'camsi', 'CSS0045503' => 'camsi', 'DCAR_024559' => 'dca', 'DCAR_025635' => 'dca', 'DCAR_027085' => 'dca', 'DCAR_027086' => 'dca', 'DCAR_030540' => 'dca', 'Dinv13702' => 'din', 'Dinv30776' => 'din', 'Dinv38305' => 'din', 'Dinv40303' => 'din', 'Dinv44399' => 'din', 'Dinv44400' => 'din', 'Duzib052G0601' => 'dzi', 'Duzib128G0464' => 'dzi', 'Duzib151G0890' => 'dzi', 'Duzib177G0180' => 'dzi', 'Duzib212G0315' => 'dzi', 'ECA234G0557' => 'eca', 'ECA240G3320' => 'eca', 'ECA247G3703' => 'eca', 'EL10Ac4g09404' => 'bvu', 'Eucgr.H03882' => 'egr', 'FAN02G4595' => 'fan', 'FAN05G0428' => 'fan', 'FAN07G0952' => 'fan', 'FAN09G2447' => 'fan', 'FAN11G3583' => 'fan', 'FAN12G0743' => 'fan', 'FAN12G1350' => 'fan', 'FAN14G1558' => 'fan', 'FAN16G1520' => 'fan', 'FAN17G0187' => 'fan', 'FAN22G1723' => 'fan', 'FAN25G3255' => 'fan', 'FvH4_3g04200' => 'fve', 'FvH4_4g17690' => 'fve', 'FvH4_6g06180' => 'fve', 'Glyma.03G236900' => 'gma', 'Glyma.07G249700' => 'gma', 'Glyma.09G046800' => 'gma', 'Glyma.10G153700' => 'gma', 'Glyma.15G154300' => 'gma', 'Glyma.17G024700' => 'gma', 'Glyma.19G234600' => 'gma', 'Glyma.20G234600' => 'gma', 'Gohir.A02G048300' => 'ghi', 'Gohir.A08G209700' => 'ghi', 'Gohir.A09G240000' => 'ghi', 'Gohir.A10G162700' => 'ghi', 'Gohir.A11G265800' => 'ghi', 'Gohir.A11G295200' => 'ghi', 'Gohir.D02G053400' => 'ghi', 'Gohir.D08G226600' => 'ghi', 'Gohir.D09G240800' => 'ghi', 'Gohir.D10G169100' => 'ghi', 'Gohir.D11G275900' => 'ghi', 'Gohir.D11G311700' => 'ghi', 'Gorai.004G240500' => 'gra', 'Gorai.005G059200' => 'gra', 'Gorai.006G264100' => 'gra', 'Gorai.007G298100' => 'gra', 'Gorai.007G342100' => 'gra', 'Gorai.011G188600' => 'gra', 'GSVIVG01000091001' => 'vvi', 'GSVIVG01017767001' => 'vvi', 'HanXRQChr03g0080891' => 'han', 'HanXRQChr03g0090621' => 'han', 'HanXRQChr09g0262571' => 'han', 'HanXRQChr10g0297811' => 'han', 'HanXRQChr10g0316001' => 'han', 'HanXRQChr13g0410101' => 'han', 'Haze_01235' => 'cav', 'Haze_04175' => 'cav', 'Hma1.2p1_0698F.1_g205330' => 'hma', 'Hma1.2p1_1334F.1_g276320' => 'hma', 'HPP92_010659' => 'vpl', 'HPP92_010705' => 'vpl', 'HPP92_011822' => 'vpl', 'HPP92_013704' => 'vpl', 'Hund07079' => 'sun', 'Lalb_Chr07g0177641' => 'lal', 'Lalb_Chr15g0077251' => 'lal', 'Lalb_Chr18g0045681' => 'lal', 'Lalb_Chr18g0051801' => 'lal', 'Lalb_Chr20g0114431' => 'lal', 'Lj1g0019878' => 'lja', 'Lj4g0019649' => 'lja', 'Lj5A504G36' => 'lonja', 'Lj5A504G37' => 'lonja', 'Lj5A85T110' => 'lonja', 'Lj5g0015789' => 'lja', 'Lj5g0026589' => 'lja', 'Lj6A672G26' => 'lonja', 'Lj6g0006467' => 'lja', 'Lju1819C2G19' => 'lonja', 'Lsat_1_v5_gn_1_30080' => 'lsa', 'Lsat_1_v5_gn_5_105841' => 'lsa', 'Lsat_1_v5_gn_5_146681' => 'lsa', 'Lsat_1_v5_gn_5_52020' => 'lsa', 'Lsat_1_v5_gn_5_9401' => 'lsa', 'Manes.03G192700' => 'mes', 'Manes.08G120100' => 'mes', 'Manes.09G168100' => 'mes', 'Manes.15G014200' => 'mes', 'Mapoly0051s0005' => 'mpo', 'MBI07_g07555_MAGBIO' => 'mbi', 'MBI19_g24000_MAGBIO' => 'mbi', 'MCO11G921' => 'mco', 'MD04G1203600' => 'mdo', 'MD12G1217400' => 'mdo', 'MD13G1170700' => 'mdo', 'MD16G1172400' => 'mdo', 'Medtr0392s0010' => 'mtr', 'Medtr1g083050' => 'mtr', 'Medtr4g119400' => 'mtr', 'Medtr7g113330' => 'mtr', 'MELO3C021347.2' => 'cme', 'Migut.G00181' => 'egut', 'Migut.N00105' => 'egut', 'MSTRG.20427' => 'ama', 'MSTRG.21804' => 'ama', 'MSTRG.22820' => 'ama', 'MSTRG.24787' => 'ama', 'MSTRG.3932' => 'ama', 'Nitab4.5_0000137g0040' => 'nta', 'Nitab4.5_0000784g0070' => 'nta', 'Nitab4.5_0000976g0160' => 'nta', 'Nitab4.5_0003156g0030' => 'nta', 'Nitab4.5_0004985g0050' => 'nta', 'Nitab4.5_0013689g0010' => 'nta', 'Nn3g21381' => 'nnu', 'Nn4g22092' => 'nnu', 'Nn4g25934' => 'nnu', 'Oeu012103.1' => 'oeu', 'Oeu017205.1' => 'oeu', 'Oeu021110.1' => 'oeu', 'Oeu026306.3' => 'oeu', 'Oeu029258.2' => 'oeu', 'Os03g0856400' => 'osa', 'Os04g0401300' => 'osa', 'Peaxi162Scf00037g00716' => 'pax', 'Peaxi162Scf00314g00751' => 'pax', 'Peaxi162Scf00386g00413' => 'pax', 'PGR004G2575' => 'pgr', 'PGR031G1313' => 'pgr', 'PGSC0003DMG400014170' => 'stu', 'PGSC0003DMG401010657' => 'stu', 'PGSC0003DMG402010657' => 'stu', 'PGSC0003DMG402024742' => 'stu', 'Phvul.003G103000' => 'pvu', 'Phvul.006G091100' => 'pvu', 'Phvul.007G179400' => 'pvu', 'Phvul.009G246000' => 'pvu', 'Potri.005G028800' => 'ptr', 'Potri.005G029300' => 'ptr', 'Potri.005G029900' => 'ptr', 'Potri.008G216800' => 'ptr', 'Potri.010G023500' => 'ptr', 'Potri.013G020400' => 'ptr', 'Pp3c11_18670' => 'ppa', 'Pp3c7_4960' => 'ppa', 'Pp3c7_5010' => 'ppa', 'PRCOL_00002888' => 'pco', 'Prupe.1G139100' => 'ppe', 'Prupe.6G323700' => 'ppe', 'Psat0s2406g0160' => 'psa', 'Psat0s2745g0120' => 'psa', 'Psat1g153160' => 'psa', 'Psat4g027920' => 'psa', 'Psat4g027960' => 'psa', 'Psat5g008040' => 'psa', 'PSO017G3656' => 'pso', 'PSO170G1318' => 'pso', 'PSO210G0979' => 'pso', 'PSO210G3547' => 'pso', 'PSO478G1222' => 'pso', 'PSO832G1373' => 'pso', 'QL03p007418' => 'qlo', 'QL03p007686' => 'qlo', 'QL06p008290' => 'qlo', 'RcHm_v2.0_Chr3g0455191' => 'rch', 'RcHm_v2.0_Chr4g0421631' => 'rch', 'Rhsim04G0219500' => 'rsi', 'Rhsim07G0186000' => 'rsi', 'Rhsim12G0182200' => 'rsi', 'Sabra05G0033400' => 'sbr', 'Sabra10G0015300' => 'sbr', 'Sabra13G0022900' => 'sbr', 'SalBow2G1100' => 'sbo', 'SalBow2G1814' => 'sbo', 'SalBow5G0615' => 'sbo', 'SalBow7G3540' => 'sbo', 'Sc06g0003260' => 'sci', 'Sc09g0003110' => 'sci', 'Sc16g0008500' => 'sci', 'Sc19g0005050' => 'sci', 'Sed0013858' => 'sed', 'Sed0025025' => 'sed', 'SEGI_17247' => 'sgi', 'SEGI_23681' => 'sgi', 'SGA_v2.0_scaffold175G39291' => 'sas', 'SGA_v2.0_scaffold428G51520' => 'sas', 'SMO244G0080' => 'smo', 'Solyc01g067590.3' => 'sly', 'Solyc01g099280.3' => 'sly', 'Solyc03g118070.3' => 'sly', 'Sopen01g029540' => 'spe', 'Sopen01g042830' => 'spe', 'Sopen03g036970' => 'spe', 'Sp1g07630' => 'spa', 'TAR362G0013' => 'tar', 'TAR374G1492' => 'tar', 'TAR622G0599' => 'tar', 'TAR633G2083' => 'tar', 'THA.LOC104802551' => 'tha', 'THA.LOC104805883' => 'tha', 'THA.LOC104820842' => 'tha', 'THA.LOC104821769' => 'tha', 'Thecc.04G282100' => 'tca', 'Thecc.05G309800' => 'tca', 'Thhalv10007484m.g' => 'esa', 'TPR.G14622' => 'tpr', 'TPR.G31152' => 'tpr', 'TPR.G33182' => 'tpr', 'TPR.G5240' => 'tpr', 'TWI09G1206' => 'twi', 'TWI12G1293' => 'twi', 'TWI36G1555' => 'twi', 'TWI53G0864' => 'twi', 'TWI56G0250' => 'twi', 'unitig_37.g12391' => 'ugi', 'unitig_46.g18687' => 'ugi', 'vmacro04971' => 'vma', 'vmacro08124' => 'vma', 'vmacro16764' => 'vma', 'vmacro22209' => 'vma', 'VMungo0540G1377' => 'vmu', 'VMungo0720G0241' => 'vmu', 'VMungo0720G2177' => 'vmu', 'VMungo1215G2585' => 'vmu', 'VMungo1309G1195' => 'vmu', 'Zm00001eb045310' => 'zma', 'Zm00001eb064940' => 'zma', 'Zm00001eb084670' => 'zma', 'Zm00001eb130380' => 'zma', 'Zm00001eb210470' => 'zma', 'Zm00001eb271300' => 'zma', 'Zm00001eb345470' => 'zma', 'Zm00001eb357500' => 'zma', 'Zm00001eb421550' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001942' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001942' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001942' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001942' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '340', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A06p05840' => 'bna', 'A08p34850' => 'bna', 'A09p65620' => 'bna', 'Aa31sc136G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.835' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.170' => 'aag', 'Actinidia01462' => 'ach', 'Actinidia05685' => 'ach', 'Actinidia08915' => 'ach', 'Actinidia23651' => 'ach', 'Actinidia36847' => 'ach', 'Actinidia40250' => 'ach', 'Actinidia40251' => 'ach', 'Ah.04g160360' => 'amhyb', 'Ah.06g189480' => 'amhyb', 'AL1G19450' => 'aly', 'Aqoxy2G03051' => 'aox', 'Aqoxy5G00657' => 'aox', 'Aqoxy5G03017' => 'aox', 'Aqoxy5G03018' => 'aox', 'Aqoxy6G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B5S4LJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX6P8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML1F2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7ZVQ' => 'arhy', 'AT1G09020' => 'ath', 'ATR0706G230' => 'atr', 'Atru.chr2.359' => 'acertr', 'Atru.chr4.2801' => 'acertr', 'Atru.chr4.2802' => 'acertr', 'AUR62000807' => 'cqu', 'AUR62005161' => 'cqu', 'BcaB07g34119' => 'bca', 'BcaC05g24753' => 'bca', 'BcaC07g38469' => 'bca', 'BcaC07g41908' => 'bca', 'BolC5t29460H' => 'bol', 'BolC8t48881H' => 'bol', 'BolC8t52498H' => 'bol', 'BraA06t23794Z' => 'bra', 'BraA08t35396Z' => 'bra', 'BraA09t41906Z' => 'bra', 'C05p07050' => 'bna', 'C08p12410' => 'bna', 'C08p49700' => 'bna', 'CAN.G1008.45' => 'can', 'CAN.G1034.24' => 'can', 'CAN.G223.18' => 'can', 'CANSAT54G0129' => 'cansat', 'CANSAT78G2473' => 'cansat', 'CARHR008910' => 'chi', 'Carub.0001s0834' => 'cru', 'Ca_05810_v3' => 'car', 'Ca_10117_v3' => 'car', 'Ca_10137_v3' => 'car', 'Ca_21533_v3' => 'car', 'CBR_g22060' => 'cbr', 'Cc02_g33290' => 'ccan', 'Cc03_g02060' => 'ccan', 'Cc04_g05690' => 'ccan', 'CDE01G0552' => 'cde', 'CDE05G2787' => 'cde', 'CDE12G0773' => 'cde', 'Cfa006602' => 'cfa', 'Cfa015367' => 'cfa', 'Cfa025937' => 'cfa', 'Ciclev10000984m.g' => 'ccl', 'Ciclev10004799m.g' => 'ccl', 'CiPaw.01G150500' => 'cil', 'CiPaw.02G084500' => 'cil', 'CiPaw.07G019000' => 'cil', 'CiPaw.08G163800' => 'cil', 'CiPaw.08G172600' => 'cil', 'ClCG06G005280' => 'cla', 'COL.COLO4_13899' => 'col', 'Cpa.g.sc16.154' => 'cpa', 'Cpa.g.sc16.156' => 'cpa', 'Cpa.g.sc48.71' => 'cpa', 'Cre12.g484350' => 'cre', 'CsaV3_6G017330' => 'csa', 'CSS0002596' => 'camsi', 'CSS0007501' => 'camsi', 'CSS0019245' => 'camsi', 'CSS0026972' => 'camsi', 'CSS0029143' => 'camsi', 'CSS0029500' => 'camsi', 'CSS0031005' => 'camsi', 'CSS0040291' => 'camsi', 'CSS0043577' => 'camsi', 'CSS0043685' => 'camsi', 'CSS0045503' => 'camsi', 'DCAR_024559' => 'dca', 'DCAR_025635' => 'dca', 'DCAR_027085' => 'dca', 'DCAR_027086' => 'dca', 'DCAR_030540' => 'dca', 'Dinv13702' => 'din', 'Dinv30776' => 'din', 'Dinv38305' => 'din', 'Dinv40303' => 'din', 'Dinv44399' => 'din', 'Dinv44400' => 'din', 'Duzib052G0601' => 'dzi', 'Duzib128G0464' => 'dzi', 'Duzib151G0890' => 'dzi', 'Duzib177G0180' => 'dzi', 'Duzib212G0315' => 'dzi', 'ECA234G0557' => 'eca', 'ECA240G3320' => 'eca', 'ECA247G3703' => 'eca', 'EL10Ac4g09404' => 'bvu', 'Eucgr.H03882' => 'egr', 'FAN02G4595' => 'fan', 'FAN05G0428' => 'fan', 'FAN07G0952' => 'fan', 'FAN09G2447' => 'fan', 'FAN11G3583' => 'fan', 'FAN12G0743' => 'fan', 'FAN12G1350' => 'fan', 'FAN14G1558' => 'fan', 'FAN16G1520' => 'fan', 'FAN17G0187' => 'fan', 'FAN22G1723' => 'fan', 'FAN25G3255' => 'fan', 'FvH4_3g04200' => 'fve', 'FvH4_4g17690' => 'fve', 'FvH4_6g06180' => 'fve', 'Glyma.03G236900' => 'gma', 'Glyma.07G249700' => 'gma', 'Glyma.09G046800' => 'gma', 'Glyma.10G153700' => 'gma', 'Glyma.15G154300' => 'gma', 'Glyma.17G024700' => 'gma', 'Glyma.19G234600' => 'gma', 'Glyma.20G234600' => 'gma', 'Gohir.A02G048300' => 'ghi', 'Gohir.A08G209700' => 'ghi', 'Gohir.A09G240000' => 'ghi', 'Gohir.A10G162700' => 'ghi', 'Gohir.A11G265800' => 'ghi', 'Gohir.A11G295200' => 'ghi', 'Gohir.D02G053400' => 'ghi', 'Gohir.D08G226600' => 'ghi', 'Gohir.D09G240800' => 'ghi', 'Gohir.D10G169100' => 'ghi', 'Gohir.D11G275900' => 'ghi', 'Gohir.D11G311700' => 'ghi', 'Gorai.004G240500' => 'gra', 'Gorai.005G059200' => 'gra', 'Gorai.006G264100' => 'gra', 'Gorai.007G298100' => 'gra', 'Gorai.007G342100' => 'gra', 'Gorai.011G188600' => 'gra', 'GSVIVG01000091001' => 'vvi', 'GSVIVG01017767001' => 'vvi', 'HanXRQChr03g0080891' => 'han', 'HanXRQChr03g0090621' => 'han', 'HanXRQChr09g0262571' => 'han', 'HanXRQChr10g0297811' => 'han', 'HanXRQChr10g0316001' => 'han', 'HanXRQChr13g0410101' => 'han', 'Haze_01235' => 'cav', 'Haze_04175' => 'cav', 'Hma1.2p1_0698F.1_g205330' => 'hma', 'Hma1.2p1_1334F.1_g276320' => 'hma', 'HPP92_010659' => 'vpl', 'HPP92_010705' => 'vpl', 'HPP92_011822' => 'vpl', 'HPP92_013704' => 'vpl', 'Hund07079' => 'sun', 'Lalb_Chr07g0177641' => 'lal', 'Lalb_Chr15g0077251' => 'lal', 'Lalb_Chr18g0045681' => 'lal', 'Lalb_Chr18g0051801' => 'lal', 'Lalb_Chr20g0114431' => 'lal', 'Lj1g0019878' => 'lja', 'Lj4g0019649' => 'lja', 'Lj5A504G36' => 'lonja', 'Lj5A504G37' => 'lonja', 'Lj5A85T110' => 'lonja', 'Lj5g0015789' => 'lja', 'Lj5g0026589' => 'lja', 'Lj6A672G26' => 'lonja', 'Lj6g0006467' => 'lja', 'Lju1819C2G19' => 'lonja', 'Lsat_1_v5_gn_1_30080' => 'lsa', 'Lsat_1_v5_gn_5_105841' => 'lsa', 'Lsat_1_v5_gn_5_146681' => 'lsa', 'Lsat_1_v5_gn_5_52020' => 'lsa', 'Lsat_1_v5_gn_5_9401' => 'lsa', 'Manes.03G192700' => 'mes', 'Manes.08G120100' => 'mes', 'Manes.09G168100' => 'mes', 'Manes.15G014200' => 'mes', 'Mapoly0051s0005' => 'mpo', 'MBI07_g07555_MAGBIO' => 'mbi', 'MBI19_g24000_MAGBIO' => 'mbi', 'MCO11G921' => 'mco', 'MD04G1203600' => 'mdo', 'MD12G1217400' => 'mdo', 'MD13G1170700' => 'mdo', 'MD16G1172400' => 'mdo', 'Medtr0392s0010' => 'mtr', 'Medtr1g083050' => 'mtr', 'Medtr4g119400' => 'mtr', 'Medtr7g113330' => 'mtr', 'MELO3C021347.2' => 'cme', 'Migut.G00181' => 'egut', 'Migut.N00105' => 'egut', 'MSTRG.20427' => 'ama', 'MSTRG.21804' => 'ama', 'MSTRG.22820' => 'ama', 'MSTRG.24787' => 'ama', 'MSTRG.3932' => 'ama', 'Nitab4.5_0000137g0040' => 'nta', 'Nitab4.5_0000784g0070' => 'nta', 'Nitab4.5_0000976g0160' => 'nta', 'Nitab4.5_0003156g0030' => 'nta', 'Nitab4.5_0004985g0050' => 'nta', 'Nitab4.5_0013689g0010' => 'nta', 'Nn3g21381' => 'nnu', 'Nn4g22092' => 'nnu', 'Nn4g25934' => 'nnu', 'Oeu012103.1' => 'oeu', 'Oeu017205.1' => 'oeu', 'Oeu021110.1' => 'oeu', 'Oeu026306.3' => 'oeu', 'Oeu029258.2' => 'oeu', 'Os03g0856400' => 'osa', 'Os04g0401300' => 'osa', 'Peaxi162Scf00037g00716' => 'pax', 'Peaxi162Scf00314g00751' => 'pax', 'Peaxi162Scf00386g00413' => 'pax', 'PGR004G2575' => 'pgr', 'PGR031G1313' => 'pgr', 'PGSC0003DMG400014170' => 'stu', 'PGSC0003DMG401010657' => 'stu', 'PGSC0003DMG402010657' => 'stu', 'PGSC0003DMG402024742' => 'stu', 'Phvul.003G103000' => 'pvu', 'Phvul.006G091100' => 'pvu', 'Phvul.007G179400' => 'pvu', 'Phvul.009G246000' => 'pvu', 'Potri.005G028800' => 'ptr', 'Potri.005G029300' => 'ptr', 'Potri.005G029900' => 'ptr', 'Potri.008G216800' => 'ptr', 'Potri.010G023500' => 'ptr', 'Potri.013G020400' => 'ptr', 'Pp3c11_18670' => 'ppa', 'Pp3c7_4960' => 'ppa', 'Pp3c7_5010' => 'ppa', 'PRCOL_00002888' => 'pco', 'Prupe.1G139100' => 'ppe', 'Prupe.6G323700' => 'ppe', 'Psat0s2406g0160' => 'psa', 'Psat0s2745g0120' => 'psa', 'Psat1g153160' => 'psa', 'Psat4g027920' => 'psa', 'Psat4g027960' => 'psa', 'Psat5g008040' => 'psa', 'PSO017G3656' => 'pso', 'PSO170G1318' => 'pso', 'PSO210G0979' => 'pso', 'PSO210G3547' => 'pso', 'PSO478G1222' => 'pso', 'PSO832G1373' => 'pso', 'QL03p007418' => 'qlo', 'QL03p007686' => 'qlo', 'QL06p008290' => 'qlo', 'RcHm_v2.0_Chr3g0455191' => 'rch', 'RcHm_v2.0_Chr4g0421631' => 'rch', 'Rhsim04G0219500' => 'rsi', 'Rhsim07G0186000' => 'rsi', 'Rhsim12G0182200' => 'rsi', 'Sabra05G0033400' => 'sbr', 'Sabra10G0015300' => 'sbr', 'Sabra13G0022900' => 'sbr', 'SalBow2G1100' => 'sbo', 'SalBow2G1814' => 'sbo', 'SalBow5G0615' => 'sbo', 'SalBow7G3540' => 'sbo', 'Sc06g0003260' => 'sci', 'Sc09g0003110' => 'sci', 'Sc16g0008500' => 'sci', 'Sc19g0005050' => 'sci', 'Sed0013858' => 'sed', 'Sed0025025' => 'sed', 'SEGI_17247' => 'sgi', 'SEGI_23681' => 'sgi', 'SGA_v2.0_scaffold175G39291' => 'sas', 'SGA_v2.0_scaffold428G51520' => 'sas', 'SMO244G0080' => 'smo', 'Solyc01g067590.3' => 'sly', 'Solyc01g099280.3' => 'sly', 'Solyc03g118070.3' => 'sly', 'Sopen01g029540' => 'spe', 'Sopen01g042830' => 'spe', 'Sopen03g036970' => 'spe', 'Sp1g07630' => 'spa', 'TAR362G0013' => 'tar', 'TAR374G1492' => 'tar', 'TAR622G0599' => 'tar', 'TAR633G2083' => 'tar', 'THA.LOC104802551' => 'tha', 'THA.LOC104805883' => 'tha', 'THA.LOC104820842' => 'tha', 'THA.LOC104821769' => 'tha', 'Thecc.04G282100' => 'tca', 'Thecc.05G309800' => 'tca', 'Thhalv10007484m.g' => 'esa', 'TPR.G14622' => 'tpr', 'TPR.G31152' => 'tpr', 'TPR.G33182' => 'tpr', 'TPR.G5240' => 'tpr', 'TWI09G1206' => 'twi', 'TWI12G1293' => 'twi', 'TWI36G1555' => 'twi', 'TWI53G0864' => 'twi', 'TWI56G0250' => 'twi', 'unitig_37.g12391' => 'ugi', 'unitig_46.g18687' => 'ugi', 'vmacro04971' => 'vma', 'vmacro08124' => 'vma', 'vmacro16764' => 'vma', 'vmacro22209' => 'vma', 'VMungo0540G1377' => 'vmu', 'VMungo0720G0241' => 'vmu', 'VMungo0720G2177' => 'vmu', 'VMungo1215G2585' => 'vmu', 'VMungo1309G1195' => 'vmu', 'Zm00001eb045310' => 'zma', 'Zm00001eb064940' => 'zma', 'Zm00001eb084670' => 'zma', 'Zm00001eb130380' => 'zma', 'Zm00001eb210470' => 'zma', 'Zm00001eb271300' => 'zma', 'Zm00001eb345470' => 'zma', 'Zm00001eb357500' => 'zma', 'Zm00001eb421550' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001942', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001942' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '340', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001942' ) ), 'genes' => array( 'A06p05840' => 'bna', 'A08p34850' => 'bna', 'A09p65620' => 'bna', 'Aa31sc136G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.835' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.170' => 'aag', 'Actinidia01462' => 'ach', 'Actinidia05685' => 'ach', 'Actinidia08915' => 'ach', 'Actinidia23651' => 'ach', 'Actinidia36847' => 'ach', 'Actinidia40250' => 'ach', 'Actinidia40251' => 'ach', 'Ah.04g160360' => 'amhyb', 'Ah.06g189480' => 'amhyb', 'AL1G19450' => 'aly', 'Aqoxy2G03051' => 'aox', 'Aqoxy5G00657' => 'aox', 'Aqoxy5G03017' => 'aox', 'Aqoxy5G03018' => 'aox', 'Aqoxy6G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B5S4LJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX6P8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML1F2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7ZVQ' => 'arhy', 'AT1G09020' => 'ath', 'ATR0706G230' => 'atr', 'Atru.chr2.359' => 'acertr', 'Atru.chr4.2801' => 'acertr', 'Atru.chr4.2802' => 'acertr', 'AUR62000807' => 'cqu', 'AUR62005161' => 'cqu', 'BcaB07g34119' => 'bca', 'BcaC05g24753' => 'bca', 'BcaC07g38469' => 'bca', 'BcaC07g41908' => 'bca', 'BolC5t29460H' => 'bol', 'BolC8t48881H' => 'bol', 'BolC8t52498H' => 'bol', 'BraA06t23794Z' => 'bra', 'BraA08t35396Z' => 'bra', 'BraA09t41906Z' => 'bra', 'C05p07050' => 'bna', 'C08p12410' => 'bna', 'C08p49700' => 'bna', 'CAN.G1008.45' => 'can', 'CAN.G1034.24' => 'can', 'CAN.G223.18' => 'can', 'CANSAT54G0129' => 'cansat', 'CANSAT78G2473' => 'cansat', 'CARHR008910' => 'chi', 'Carub.0001s0834' => 'cru', 'Ca_05810_v3' => 'car', 'Ca_10117_v3' => 'car', 'Ca_10137_v3' => 'car', 'Ca_21533_v3' => 'car', 'CBR_g22060' => 'cbr', 'Cc02_g33290' => 'ccan', 'Cc03_g02060' => 'ccan', 'Cc04_g05690' => 'ccan', 'CDE01G0552' => 'cde', 'CDE05G2787' => 'cde', 'CDE12G0773' => 'cde', 'Cfa006602' => 'cfa', 'Cfa015367' => 'cfa', 'Cfa025937' => 'cfa', 'Ciclev10000984m.g' => 'ccl', 'Ciclev10004799m.g' => 'ccl', 'CiPaw.01G150500' => 'cil', 'CiPaw.02G084500' => 'cil', 'CiPaw.07G019000' => 'cil', 'CiPaw.08G163800' => 'cil', 'CiPaw.08G172600' => 'cil', 'ClCG06G005280' => 'cla', 'COL.COLO4_13899' => 'col', 'Cpa.g.sc16.154' => 'cpa', 'Cpa.g.sc16.156' => 'cpa', 'Cpa.g.sc48.71' => 'cpa', 'Cre12.g484350' => 'cre', 'CsaV3_6G017330' => 'csa', 'CSS0002596' => 'camsi', 'CSS0007501' => 'camsi', 'CSS0019245' => 'camsi', 'CSS0026972' => 'camsi', 'CSS0029143' => 'camsi', 'CSS0029500' => 'camsi', 'CSS0031005' => 'camsi', 'CSS0040291' => 'camsi', 'CSS0043577' => 'camsi', 'CSS0043685' => 'camsi', 'CSS0045503' => 'camsi', 'DCAR_024559' => 'dca', 'DCAR_025635' => 'dca', 'DCAR_027085' => 'dca', 'DCAR_027086' => 'dca', 'DCAR_030540' => 'dca', 'Dinv13702' => 'din', 'Dinv30776' => 'din', 'Dinv38305' => 'din', 'Dinv40303' => 'din', 'Dinv44399' => 'din', 'Dinv44400' => 'din', 'Duzib052G0601' => 'dzi', 'Duzib128G0464' => 'dzi', 'Duzib151G0890' => 'dzi', 'Duzib177G0180' => 'dzi', 'Duzib212G0315' => 'dzi', 'ECA234G0557' => 'eca', 'ECA240G3320' => 'eca', 'ECA247G3703' => 'eca', 'EL10Ac4g09404' => 'bvu', 'Eucgr.H03882' => 'egr', 'FAN02G4595' => 'fan', 'FAN05G0428' => 'fan', 'FAN07G0952' => 'fan', 'FAN09G2447' => 'fan', 'FAN11G3583' => 'fan', 'FAN12G0743' => 'fan', 'FAN12G1350' => 'fan', 'FAN14G1558' => 'fan', 'FAN16G1520' => 'fan', 'FAN17G0187' => 'fan', 'FAN22G1723' => 'fan', 'FAN25G3255' => 'fan', 'FvH4_3g04200' => 'fve', 'FvH4_4g17690' => 'fve', 'FvH4_6g06180' => 'fve', 'Glyma.03G236900' => 'gma', 'Glyma.07G249700' => 'gma', 'Glyma.09G046800' => 'gma', 'Glyma.10G153700' => 'gma', 'Glyma.15G154300' => 'gma', 'Glyma.17G024700' => 'gma', 'Glyma.19G234600' => 'gma', 'Glyma.20G234600' => 'gma', 'Gohir.A02G048300' => 'ghi', 'Gohir.A08G209700' => 'ghi', 'Gohir.A09G240000' => 'ghi', 'Gohir.A10G162700' => 'ghi', 'Gohir.A11G265800' => 'ghi', 'Gohir.A11G295200' => 'ghi', 'Gohir.D02G053400' => 'ghi', 'Gohir.D08G226600' => 'ghi', 'Gohir.D09G240800' => 'ghi', 'Gohir.D10G169100' => 'ghi', 'Gohir.D11G275900' => 'ghi', 'Gohir.D11G311700' => 'ghi', 'Gorai.004G240500' => 'gra', 'Gorai.005G059200' => 'gra', 'Gorai.006G264100' => 'gra', 'Gorai.007G298100' => 'gra', 'Gorai.007G342100' => 'gra', 'Gorai.011G188600' => 'gra', 'GSVIVG01000091001' => 'vvi', 'GSVIVG01017767001' => 'vvi', 'HanXRQChr03g0080891' => 'han', 'HanXRQChr03g0090621' => 'han', 'HanXRQChr09g0262571' => 'han', 'HanXRQChr10g0297811' => 'han', 'HanXRQChr10g0316001' => 'han', 'HanXRQChr13g0410101' => 'han', 'Haze_01235' => 'cav', 'Haze_04175' => 'cav', 'Hma1.2p1_0698F.1_g205330' => 'hma', 'Hma1.2p1_1334F.1_g276320' => 'hma', 'HPP92_010659' => 'vpl', 'HPP92_010705' => 'vpl', 'HPP92_011822' => 'vpl', 'HPP92_013704' => 'vpl', 'Hund07079' => 'sun', 'Lalb_Chr07g0177641' => 'lal', 'Lalb_Chr15g0077251' => 'lal', 'Lalb_Chr18g0045681' => 'lal', 'Lalb_Chr18g0051801' => 'lal', 'Lalb_Chr20g0114431' => 'lal', 'Lj1g0019878' => 'lja', 'Lj4g0019649' => 'lja', 'Lj5A504G36' => 'lonja', 'Lj5A504G37' => 'lonja', 'Lj5A85T110' => 'lonja', 'Lj5g0015789' => 'lja', 'Lj5g0026589' => 'lja', 'Lj6A672G26' => 'lonja', 'Lj6g0006467' => 'lja', 'Lju1819C2G19' => 'lonja', 'Lsat_1_v5_gn_1_30080' => 'lsa', 'Lsat_1_v5_gn_5_105841' => 'lsa', 'Lsat_1_v5_gn_5_146681' => 'lsa', 'Lsat_1_v5_gn_5_52020' => 'lsa', 'Lsat_1_v5_gn_5_9401' => 'lsa', 'Manes.03G192700' => 'mes', 'Manes.08G120100' => 'mes', 'Manes.09G168100' => 'mes', 'Manes.15G014200' => 'mes', 'Mapoly0051s0005' => 'mpo', 'MBI07_g07555_MAGBIO' => 'mbi', 'MBI19_g24000_MAGBIO' => 'mbi', 'MCO11G921' => 'mco', 'MD04G1203600' => 'mdo', 'MD12G1217400' => 'mdo', 'MD13G1170700' => 'mdo', 'MD16G1172400' => 'mdo', 'Medtr0392s0010' => 'mtr', 'Medtr1g083050' => 'mtr', 'Medtr4g119400' => 'mtr', 'Medtr7g113330' => 'mtr', 'MELO3C021347.2' => 'cme', 'Migut.G00181' => 'egut', 'Migut.N00105' => 'egut', 'MSTRG.20427' => 'ama', 'MSTRG.21804' => 'ama', 'MSTRG.22820' => 'ama', 'MSTRG.24787' => 'ama', 'MSTRG.3932' => 'ama', 'Nitab4.5_0000137g0040' => 'nta', 'Nitab4.5_0000784g0070' => 'nta', 'Nitab4.5_0000976g0160' => 'nta', 'Nitab4.5_0003156g0030' => 'nta', 'Nitab4.5_0004985g0050' => 'nta', 'Nitab4.5_0013689g0010' => 'nta', 'Nn3g21381' => 'nnu', 'Nn4g22092' => 'nnu', 'Nn4g25934' => 'nnu', 'Oeu012103.1' => 'oeu', 'Oeu017205.1' => 'oeu', 'Oeu021110.1' => 'oeu', 'Oeu026306.3' => 'oeu', 'Oeu029258.2' => 'oeu', 'Os03g0856400' => 'osa', 'Os04g0401300' => 'osa', 'Peaxi162Scf00037g00716' => 'pax', 'Peaxi162Scf00314g00751' => 'pax', 'Peaxi162Scf00386g00413' => 'pax', 'PGR004G2575' => 'pgr', 'PGR031G1313' => 'pgr', 'PGSC0003DMG400014170' => 'stu', 'PGSC0003DMG401010657' => 'stu', 'PGSC0003DMG402010657' => 'stu', 'PGSC0003DMG402024742' => 'stu', 'Phvul.003G103000' => 'pvu', 'Phvul.006G091100' => 'pvu', 'Phvul.007G179400' => 'pvu', 'Phvul.009G246000' => 'pvu', 'Potri.005G028800' => 'ptr', 'Potri.005G029300' => 'ptr', 'Potri.005G029900' => 'ptr', 'Potri.008G216800' => 'ptr', 'Potri.010G023500' => 'ptr', 'Potri.013G020400' => 'ptr', 'Pp3c11_18670' => 'ppa', 'Pp3c7_4960' => 'ppa', 'Pp3c7_5010' => 'ppa', 'PRCOL_00002888' => 'pco', 'Prupe.1G139100' => 'ppe', 'Prupe.6G323700' => 'ppe', 'Psat0s2406g0160' => 'psa', 'Psat0s2745g0120' => 'psa', 'Psat1g153160' => 'psa', 'Psat4g027920' => 'psa', 'Psat4g027960' => 'psa', 'Psat5g008040' => 'psa', 'PSO017G3656' => 'pso', 'PSO170G1318' => 'pso', 'PSO210G0979' => 'pso', 'PSO210G3547' => 'pso', 'PSO478G1222' => 'pso', 'PSO832G1373' => 'pso', 'QL03p007418' => 'qlo', 'QL03p007686' => 'qlo', 'QL06p008290' => 'qlo', 'RcHm_v2.0_Chr3g0455191' => 'rch', 'RcHm_v2.0_Chr4g0421631' => 'rch', 'Rhsim04G0219500' => 'rsi', 'Rhsim07G0186000' => 'rsi', 'Rhsim12G0182200' => 'rsi', 'Sabra05G0033400' => 'sbr', 'Sabra10G0015300' => 'sbr', 'Sabra13G0022900' => 'sbr', 'SalBow2G1100' => 'sbo', 'SalBow2G1814' => 'sbo', 'SalBow5G0615' => 'sbo', 'SalBow7G3540' => 'sbo', 'Sc06g0003260' => 'sci', 'Sc09g0003110' => 'sci', 'Sc16g0008500' => 'sci', 'Sc19g0005050' => 'sci', 'Sed0013858' => 'sed', 'Sed0025025' => 'sed', 'SEGI_17247' => 'sgi', 'SEGI_23681' => 'sgi', 'SGA_v2.0_scaffold175G39291' => 'sas', 'SGA_v2.0_scaffold428G51520' => 'sas', 'SMO244G0080' => 'smo', 'Solyc01g067590.3' => 'sly', 'Solyc01g099280.3' => 'sly', 'Solyc03g118070.3' => 'sly', 'Sopen01g029540' => 'spe', 'Sopen01g042830' => 'spe', 'Sopen03g036970' => 'spe', 'Sp1g07630' => 'spa', 'TAR362G0013' => 'tar', 'TAR374G1492' => 'tar', 'TAR622G0599' => 'tar', 'TAR633G2083' => 'tar', 'THA.LOC104802551' => 'tha', 'THA.LOC104805883' => 'tha', 'THA.LOC104820842' => 'tha', 'THA.LOC104821769' => 'tha', 'Thecc.04G282100' => 'tca', 'Thecc.05G309800' => 'tca', 'Thhalv10007484m.g' => 'esa', 'TPR.G14622' => 'tpr', 'TPR.G31152' => 'tpr', 'TPR.G33182' => 'tpr', 'TPR.G5240' => 'tpr', 'TWI09G1206' => 'twi', 'TWI12G1293' => 'twi', 'TWI36G1555' => 'twi', 'TWI53G0864' => 'twi', 'TWI56G0250' => 'twi', 'unitig_37.g12391' => 'ugi', 'unitig_46.g18687' => 'ugi', 'vmacro04971' => 'vma', 'vmacro08124' => 'vma', 'vmacro16764' => 'vma', 'vmacro22209' => 'vma', 'VMungo0540G1377' => 'vmu', 'VMungo0720G0241' => 'vmu', 'VMungo0720G2177' => 'vmu', 'VMungo1215G2585' => 'vmu', 'VMungo1309G1195' => 'vmu', 'Zm00001eb045310' => 'zma', 'Zm00001eb064940' => 'zma', 'Zm00001eb084670' => 'zma', 'Zm00001eb130380' => 'zma', 'Zm00001eb210470' => 'zma', 'Zm00001eb271300' => 'zma', 'Zm00001eb345470' => 'zma', 'Zm00001eb357500' => 'zma', 'Zm00001eb421550' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001942' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001942' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001942' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001942' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '340', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A06p05840' => 'bna', 'A08p34850' => 'bna', 'A09p65620' => 'bna', 'Aa31sc136G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.835' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.170' => 'aag', 'Actinidia01462' => 'ach', 'Actinidia05685' => 'ach', 'Actinidia08915' => 'ach', 'Actinidia23651' => 'ach', 'Actinidia36847' => 'ach', 'Actinidia40250' => 'ach', 'Actinidia40251' => 'ach', 'Ah.04g160360' => 'amhyb', 'Ah.06g189480' => 'amhyb', 'AL1G19450' => 'aly', 'Aqoxy2G03051' => 'aox', 'Aqoxy5G00657' => 'aox', 'Aqoxy5G03017' => 'aox', 'Aqoxy5G03018' => 'aox', 'Aqoxy6G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B5S4LJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX6P8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML1F2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7ZVQ' => 'arhy', 'AT1G09020' => 'ath', 'ATR0706G230' => 'atr', 'Atru.chr2.359' => 'acertr', 'Atru.chr4.2801' => 'acertr', 'Atru.chr4.2802' => 'acertr', 'AUR62000807' => 'cqu', 'AUR62005161' => 'cqu', 'BcaB07g34119' => 'bca', 'BcaC05g24753' => 'bca', 'BcaC07g38469' => 'bca', 'BcaC07g41908' => 'bca', 'BolC5t29460H' => 'bol', 'BolC8t48881H' => 'bol', 'BolC8t52498H' => 'bol', 'BraA06t23794Z' => 'bra', 'BraA08t35396Z' => 'bra', 'BraA09t41906Z' => 'bra', 'C05p07050' => 'bna', 'C08p12410' => 'bna', 'C08p49700' => 'bna', 'CAN.G1008.45' => 'can', 'CAN.G1034.24' => 'can', 'CAN.G223.18' => 'can', 'CANSAT54G0129' => 'cansat', 'CANSAT78G2473' => 'cansat', 'CARHR008910' => 'chi', 'Carub.0001s0834' => 'cru', 'Ca_05810_v3' => 'car', 'Ca_10117_v3' => 'car', 'Ca_10137_v3' => 'car', 'Ca_21533_v3' => 'car', 'CBR_g22060' => 'cbr', 'Cc02_g33290' => 'ccan', 'Cc03_g02060' => 'ccan', 'Cc04_g05690' => 'ccan', 'CDE01G0552' => 'cde', 'CDE05G2787' => 'cde', 'CDE12G0773' => 'cde', 'Cfa006602' => 'cfa', 'Cfa015367' => 'cfa', 'Cfa025937' => 'cfa', 'Ciclev10000984m.g' => 'ccl', 'Ciclev10004799m.g' => 'ccl', 'CiPaw.01G150500' => 'cil', 'CiPaw.02G084500' => 'cil', 'CiPaw.07G019000' => 'cil', 'CiPaw.08G163800' => 'cil', 'CiPaw.08G172600' => 'cil', 'ClCG06G005280' => 'cla', 'COL.COLO4_13899' => 'col', 'Cpa.g.sc16.154' => 'cpa', 'Cpa.g.sc16.156' => 'cpa', 'Cpa.g.sc48.71' => 'cpa', 'Cre12.g484350' => 'cre', 'CsaV3_6G017330' => 'csa', 'CSS0002596' => 'camsi', 'CSS0007501' => 'camsi', 'CSS0019245' => 'camsi', 'CSS0026972' => 'camsi', 'CSS0029143' => 'camsi', 'CSS0029500' => 'camsi', 'CSS0031005' => 'camsi', 'CSS0040291' => 'camsi', 'CSS0043577' => 'camsi', 'CSS0043685' => 'camsi', 'CSS0045503' => 'camsi', 'DCAR_024559' => 'dca', 'DCAR_025635' => 'dca', 'DCAR_027085' => 'dca', 'DCAR_027086' => 'dca', 'DCAR_030540' => 'dca', 'Dinv13702' => 'din', 'Dinv30776' => 'din', 'Dinv38305' => 'din', 'Dinv40303' => 'din', 'Dinv44399' => 'din', 'Dinv44400' => 'din', 'Duzib052G0601' => 'dzi', 'Duzib128G0464' => 'dzi', 'Duzib151G0890' => 'dzi', 'Duzib177G0180' => 'dzi', 'Duzib212G0315' => 'dzi', 'ECA234G0557' => 'eca', 'ECA240G3320' => 'eca', 'ECA247G3703' => 'eca', 'EL10Ac4g09404' => 'bvu', 'Eucgr.H03882' => 'egr', 'FAN02G4595' => 'fan', 'FAN05G0428' => 'fan', 'FAN07G0952' => 'fan', 'FAN09G2447' => 'fan', 'FAN11G3583' => 'fan', 'FAN12G0743' => 'fan', 'FAN12G1350' => 'fan', 'FAN14G1558' => 'fan', 'FAN16G1520' => 'fan', 'FAN17G0187' => 'fan', 'FAN22G1723' => 'fan', 'FAN25G3255' => 'fan', 'FvH4_3g04200' => 'fve', 'FvH4_4g17690' => 'fve', 'FvH4_6g06180' => 'fve', 'Glyma.03G236900' => 'gma', 'Glyma.07G249700' => 'gma', 'Glyma.09G046800' => 'gma', 'Glyma.10G153700' => 'gma', 'Glyma.15G154300' => 'gma', 'Glyma.17G024700' => 'gma', 'Glyma.19G234600' => 'gma', 'Glyma.20G234600' => 'gma', 'Gohir.A02G048300' => 'ghi', 'Gohir.A08G209700' => 'ghi', 'Gohir.A09G240000' => 'ghi', 'Gohir.A10G162700' => 'ghi', 'Gohir.A11G265800' => 'ghi', 'Gohir.A11G295200' => 'ghi', 'Gohir.D02G053400' => 'ghi', 'Gohir.D08G226600' => 'ghi', 'Gohir.D09G240800' => 'ghi', 'Gohir.D10G169100' => 'ghi', 'Gohir.D11G275900' => 'ghi', 'Gohir.D11G311700' => 'ghi', 'Gorai.004G240500' => 'gra', 'Gorai.005G059200' => 'gra', 'Gorai.006G264100' => 'gra', 'Gorai.007G298100' => 'gra', 'Gorai.007G342100' => 'gra', 'Gorai.011G188600' => 'gra', 'GSVIVG01000091001' => 'vvi', 'GSVIVG01017767001' => 'vvi', 'HanXRQChr03g0080891' => 'han', 'HanXRQChr03g0090621' => 'han', 'HanXRQChr09g0262571' => 'han', 'HanXRQChr10g0297811' => 'han', 'HanXRQChr10g0316001' => 'han', 'HanXRQChr13g0410101' => 'han', 'Haze_01235' => 'cav', 'Haze_04175' => 'cav', 'Hma1.2p1_0698F.1_g205330' => 'hma', 'Hma1.2p1_1334F.1_g276320' => 'hma', 'HPP92_010659' => 'vpl', 'HPP92_010705' => 'vpl', 'HPP92_011822' => 'vpl', 'HPP92_013704' => 'vpl', 'Hund07079' => 'sun', 'Lalb_Chr07g0177641' => 'lal', 'Lalb_Chr15g0077251' => 'lal', 'Lalb_Chr18g0045681' => 'lal', 'Lalb_Chr18g0051801' => 'lal', 'Lalb_Chr20g0114431' => 'lal', 'Lj1g0019878' => 'lja', 'Lj4g0019649' => 'lja', 'Lj5A504G36' => 'lonja', 'Lj5A504G37' => 'lonja', 'Lj5A85T110' => 'lonja', 'Lj5g0015789' => 'lja', 'Lj5g0026589' => 'lja', 'Lj6A672G26' => 'lonja', 'Lj6g0006467' => 'lja', 'Lju1819C2G19' => 'lonja', 'Lsat_1_v5_gn_1_30080' => 'lsa', 'Lsat_1_v5_gn_5_105841' => 'lsa', 'Lsat_1_v5_gn_5_146681' => 'lsa', 'Lsat_1_v5_gn_5_52020' => 'lsa', 'Lsat_1_v5_gn_5_9401' => 'lsa', 'Manes.03G192700' => 'mes', 'Manes.08G120100' => 'mes', 'Manes.09G168100' => 'mes', 'Manes.15G014200' => 'mes', 'Mapoly0051s0005' => 'mpo', 'MBI07_g07555_MAGBIO' => 'mbi', 'MBI19_g24000_MAGBIO' => 'mbi', 'MCO11G921' => 'mco', 'MD04G1203600' => 'mdo', 'MD12G1217400' => 'mdo', 'MD13G1170700' => 'mdo', 'MD16G1172400' => 'mdo', 'Medtr0392s0010' => 'mtr', 'Medtr1g083050' => 'mtr', 'Medtr4g119400' => 'mtr', 'Medtr7g113330' => 'mtr', 'MELO3C021347.2' => 'cme', 'Migut.G00181' => 'egut', 'Migut.N00105' => 'egut', 'MSTRG.20427' => 'ama', 'MSTRG.21804' => 'ama', 'MSTRG.22820' => 'ama', 'MSTRG.24787' => 'ama', 'MSTRG.3932' => 'ama', 'Nitab4.5_0000137g0040' => 'nta', 'Nitab4.5_0000784g0070' => 'nta', 'Nitab4.5_0000976g0160' => 'nta', 'Nitab4.5_0003156g0030' => 'nta', 'Nitab4.5_0004985g0050' => 'nta', 'Nitab4.5_0013689g0010' => 'nta', 'Nn3g21381' => 'nnu', 'Nn4g22092' => 'nnu', 'Nn4g25934' => 'nnu', 'Oeu012103.1' => 'oeu', 'Oeu017205.1' => 'oeu', 'Oeu021110.1' => 'oeu', 'Oeu026306.3' => 'oeu', 'Oeu029258.2' => 'oeu', 'Os03g0856400' => 'osa', 'Os04g0401300' => 'osa', 'Peaxi162Scf00037g00716' => 'pax', 'Peaxi162Scf00314g00751' => 'pax', 'Peaxi162Scf00386g00413' => 'pax', 'PGR004G2575' => 'pgr', 'PGR031G1313' => 'pgr', 'PGSC0003DMG400014170' => 'stu', 'PGSC0003DMG401010657' => 'stu', 'PGSC0003DMG402010657' => 'stu', 'PGSC0003DMG402024742' => 'stu', 'Phvul.003G103000' => 'pvu', 'Phvul.006G091100' => 'pvu', 'Phvul.007G179400' => 'pvu', 'Phvul.009G246000' => 'pvu', 'Potri.005G028800' => 'ptr', 'Potri.005G029300' => 'ptr', 'Potri.005G029900' => 'ptr', 'Potri.008G216800' => 'ptr', 'Potri.010G023500' => 'ptr', 'Potri.013G020400' => 'ptr', 'Pp3c11_18670' => 'ppa', 'Pp3c7_4960' => 'ppa', 'Pp3c7_5010' => 'ppa', 'PRCOL_00002888' => 'pco', 'Prupe.1G139100' => 'ppe', 'Prupe.6G323700' => 'ppe', 'Psat0s2406g0160' => 'psa', 'Psat0s2745g0120' => 'psa', 'Psat1g153160' => 'psa', 'Psat4g027920' => 'psa', 'Psat4g027960' => 'psa', 'Psat5g008040' => 'psa', 'PSO017G3656' => 'pso', 'PSO170G1318' => 'pso', 'PSO210G0979' => 'pso', 'PSO210G3547' => 'pso', 'PSO478G1222' => 'pso', 'PSO832G1373' => 'pso', 'QL03p007418' => 'qlo', 'QL03p007686' => 'qlo', 'QL06p008290' => 'qlo', 'RcHm_v2.0_Chr3g0455191' => 'rch', 'RcHm_v2.0_Chr4g0421631' => 'rch', 'Rhsim04G0219500' => 'rsi', 'Rhsim07G0186000' => 'rsi', 'Rhsim12G0182200' => 'rsi', 'Sabra05G0033400' => 'sbr', 'Sabra10G0015300' => 'sbr', 'Sabra13G0022900' => 'sbr', 'SalBow2G1100' => 'sbo', 'SalBow2G1814' => 'sbo', 'SalBow5G0615' => 'sbo', 'SalBow7G3540' => 'sbo', 'Sc06g0003260' => 'sci', 'Sc09g0003110' => 'sci', 'Sc16g0008500' => 'sci', 'Sc19g0005050' => 'sci', 'Sed0013858' => 'sed', 'Sed0025025' => 'sed', 'SEGI_17247' => 'sgi', 'SEGI_23681' => 'sgi', 'SGA_v2.0_scaffold175G39291' => 'sas', 'SGA_v2.0_scaffold428G51520' => 'sas', 'SMO244G0080' => 'smo', 'Solyc01g067590.3' => 'sly', 'Solyc01g099280.3' => 'sly', 'Solyc03g118070.3' => 'sly', 'Sopen01g029540' => 'spe', 'Sopen01g042830' => 'spe', 'Sopen03g036970' => 'spe', 'Sp1g07630' => 'spa', 'TAR362G0013' => 'tar', 'TAR374G1492' => 'tar', 'TAR622G0599' => 'tar', 'TAR633G2083' => 'tar', 'THA.LOC104802551' => 'tha', 'THA.LOC104805883' => 'tha', 'THA.LOC104820842' => 'tha', 'THA.LOC104821769' => 'tha', 'Thecc.04G282100' => 'tca', 'Thecc.05G309800' => 'tca', 'Thhalv10007484m.g' => 'esa', 'TPR.G14622' => 'tpr', 'TPR.G31152' => 'tpr', 'TPR.G33182' => 'tpr', 'TPR.G5240' => 'tpr', 'TWI09G1206' => 'twi', 'TWI12G1293' => 'twi', 'TWI36G1555' => 'twi', 'TWI53G0864' => 'twi', 'TWI56G0250' => 'twi', 'unitig_37.g12391' => 'ugi', 'unitig_46.g18687' => 'ugi', 'vmacro04971' => 'vma', 'vmacro08124' => 'vma', 'vmacro16764' => 'vma', 'vmacro22209' => 'vma', 'VMungo0540G1377' => 'vmu', 'VMungo0720G0241' => 'vmu', 'VMungo0720G2177' => 'vmu', 'VMungo1215G2585' => 'vmu', 'VMungo1309G1195' => 'vmu', 'Zm00001eb045310' => 'zma', 'Zm00001eb064940' => 'zma', 'Zm00001eb084670' => 'zma', 'Zm00001eb130380' => 'zma', 'Zm00001eb210470' => 'zma', 'Zm00001eb271300' => 'zma', 'Zm00001eb345470' => 'zma', 'Zm00001eb357500' => 'zma', 'Zm00001eb421550' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001942', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001942' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '340', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001942' ) ), 'genes' => array( 'A06p05840' => 'bna', 'A08p34850' => 'bna', 'A09p65620' => 'bna', 'Aa31sc136G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.835' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.170' => 'aag', 'Actinidia01462' => 'ach', 'Actinidia05685' => 'ach', 'Actinidia08915' => 'ach', 'Actinidia23651' => 'ach', 'Actinidia36847' => 'ach', 'Actinidia40250' => 'ach', 'Actinidia40251' => 'ach', 'Ah.04g160360' => 'amhyb', 'Ah.06g189480' => 'amhyb', 'AL1G19450' => 'aly', 'Aqoxy2G03051' => 'aox', 'Aqoxy5G00657' => 'aox', 'Aqoxy5G03017' => 'aox', 'Aqoxy5G03018' => 'aox', 'Aqoxy6G02807' => 'aox', 'arahy.Tifrunner.gnm1.ann1.B5S4LJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX6P8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML1F2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7ZVQ' => 'arhy', 'AT1G09020' => 'ath', 'ATR0706G230' => 'atr', 'Atru.chr2.359' => 'acertr', 'Atru.chr4.2801' => 'acertr', 'Atru.chr4.2802' => 'acertr', 'AUR62000807' => 'cqu', 'AUR62005161' => 'cqu', 'BcaB07g34119' => 'bca', 'BcaC05g24753' => 'bca', 'BcaC07g38469' => 'bca', 'BcaC07g41908' => 'bca', 'BolC5t29460H' => 'bol', 'BolC8t48881H' => 'bol', 'BolC8t52498H' => 'bol', 'BraA06t23794Z' => 'bra', 'BraA08t35396Z' => 'bra', 'BraA09t41906Z' => 'bra', 'C05p07050' => 'bna', 'C08p12410' => 'bna', 'C08p49700' => 'bna', 'CAN.G1008.45' => 'can', 'CAN.G1034.24' => 'can', 'CAN.G223.18' => 'can', 'CANSAT54G0129' => 'cansat', 'CANSAT78G2473' => 'cansat', 'CARHR008910' => 'chi', 'Carub.0001s0834' => 'cru', 'Ca_05810_v3' => 'car', 'Ca_10117_v3' => 'car', 'Ca_10137_v3' => 'car', 'Ca_21533_v3' => 'car', 'CBR_g22060' => 'cbr', 'Cc02_g33290' => 'ccan', 'Cc03_g02060' => 'ccan', 'Cc04_g05690' => 'ccan', 'CDE01G0552' => 'cde', 'CDE05G2787' => 'cde', 'CDE12G0773' => 'cde', 'Cfa006602' => 'cfa', 'Cfa015367' => 'cfa', 'Cfa025937' => 'cfa', 'Ciclev10000984m.g' => 'ccl', 'Ciclev10004799m.g' => 'ccl', 'CiPaw.01G150500' => 'cil', 'CiPaw.02G084500' => 'cil', 'CiPaw.07G019000' => 'cil', 'CiPaw.08G163800' => 'cil', 'CiPaw.08G172600' => 'cil', 'ClCG06G005280' => 'cla', 'COL.COLO4_13899' => 'col', 'Cpa.g.sc16.154' => 'cpa', 'Cpa.g.sc16.156' => 'cpa', 'Cpa.g.sc48.71' => 'cpa', 'Cre12.g484350' => 'cre', 'CsaV3_6G017330' => 'csa', 'CSS0002596' => 'camsi', 'CSS0007501' => 'camsi', 'CSS0019245' => 'camsi', 'CSS0026972' => 'camsi', 'CSS0029143' => 'camsi', 'CSS0029500' => 'camsi', 'CSS0031005' => 'camsi', 'CSS0040291' => 'camsi', 'CSS0043577' => 'camsi', 'CSS0043685' => 'camsi', 'CSS0045503' => 'camsi', 'DCAR_024559' => 'dca', 'DCAR_025635' => 'dca', 'DCAR_027085' => 'dca', 'DCAR_027086' => 'dca', 'DCAR_030540' => 'dca', 'Dinv13702' => 'din', 'Dinv30776' => 'din', 'Dinv38305' => 'din', 'Dinv40303' => 'din', 'Dinv44399' => 'din', 'Dinv44400' => 'din', 'Duzib052G0601' => 'dzi', 'Duzib128G0464' => 'dzi', 'Duzib151G0890' => 'dzi', 'Duzib177G0180' => 'dzi', 'Duzib212G0315' => 'dzi', 'ECA234G0557' => 'eca', 'ECA240G3320' => 'eca', 'ECA247G3703' => 'eca', 'EL10Ac4g09404' => 'bvu', 'Eucgr.H03882' => 'egr', 'FAN02G4595' => 'fan', 'FAN05G0428' => 'fan', 'FAN07G0952' => 'fan', 'FAN09G2447' => 'fan', 'FAN11G3583' => 'fan', 'FAN12G0743' => 'fan', 'FAN12G1350' => 'fan', 'FAN14G1558' => 'fan', 'FAN16G1520' => 'fan', 'FAN17G0187' => 'fan', 'FAN22G1723' => 'fan', 'FAN25G3255' => 'fan', 'FvH4_3g04200' => 'fve', 'FvH4_4g17690' => 'fve', 'FvH4_6g06180' => 'fve', 'Glyma.03G236900' => 'gma', 'Glyma.07G249700' => 'gma', 'Glyma.09G046800' => 'gma', 'Glyma.10G153700' => 'gma', 'Glyma.15G154300' => 'gma', 'Glyma.17G024700' => 'gma', 'Glyma.19G234600' => 'gma', 'Glyma.20G234600' => 'gma', 'Gohir.A02G048300' => 'ghi', 'Gohir.A08G209700' => 'ghi', 'Gohir.A09G240000' => 'ghi', 'Gohir.A10G162700' => 'ghi', 'Gohir.A11G265800' => 'ghi', 'Gohir.A11G295200' => 'ghi', 'Gohir.D02G053400' => 'ghi', 'Gohir.D08G226600' => 'ghi', 'Gohir.D09G240800' => 'ghi', 'Gohir.D10G169100' => 'ghi', 'Gohir.D11G275900' => 'ghi', 'Gohir.D11G311700' => 'ghi', 'Gorai.004G240500' => 'gra', 'Gorai.005G059200' => 'gra', 'Gorai.006G264100' => 'gra', 'Gorai.007G298100' => 'gra', 'Gorai.007G342100' => 'gra', 'Gorai.011G188600' => 'gra', 'GSVIVG01000091001' => 'vvi', 'GSVIVG01017767001' => 'vvi', 'HanXRQChr03g0080891' => 'han', 'HanXRQChr03g0090621' => 'han', 'HanXRQChr09g0262571' => 'han', 'HanXRQChr10g0297811' => 'han', 'HanXRQChr10g0316001' => 'han', 'HanXRQChr13g0410101' => 'han', 'Haze_01235' => 'cav', 'Haze_04175' => 'cav', 'Hma1.2p1_0698F.1_g205330' => 'hma', 'Hma1.2p1_1334F.1_g276320' => 'hma', 'HPP92_010659' => 'vpl', 'HPP92_010705' => 'vpl', 'HPP92_011822' => 'vpl', 'HPP92_013704' => 'vpl', 'Hund07079' => 'sun', 'Lalb_Chr07g0177641' => 'lal', 'Lalb_Chr15g0077251' => 'lal', 'Lalb_Chr18g0045681' => 'lal', 'Lalb_Chr18g0051801' => 'lal', 'Lalb_Chr20g0114431' => 'lal', 'Lj1g0019878' => 'lja', 'Lj4g0019649' => 'lja', 'Lj5A504G36' => 'lonja', 'Lj5A504G37' => 'lonja', 'Lj5A85T110' => 'lonja', 'Lj5g0015789' => 'lja', 'Lj5g0026589' => 'lja', 'Lj6A672G26' => 'lonja', 'Lj6g0006467' => 'lja', 'Lju1819C2G19' => 'lonja', 'Lsat_1_v5_gn_1_30080' => 'lsa', 'Lsat_1_v5_gn_5_105841' => 'lsa', 'Lsat_1_v5_gn_5_146681' => 'lsa', 'Lsat_1_v5_gn_5_52020' => 'lsa', 'Lsat_1_v5_gn_5_9401' => 'lsa', 'Manes.03G192700' => 'mes', 'Manes.08G120100' => 'mes', 'Manes.09G168100' => 'mes', 'Manes.15G014200' => 'mes', 'Mapoly0051s0005' => 'mpo', 'MBI07_g07555_MAGBIO' => 'mbi', 'MBI19_g24000_MAGBIO' => 'mbi', 'MCO11G921' => 'mco', 'MD04G1203600' => 'mdo', 'MD12G1217400' => 'mdo', 'MD13G1170700' => 'mdo', 'MD16G1172400' => 'mdo', 'Medtr0392s0010' => 'mtr', 'Medtr1g083050' => 'mtr', 'Medtr4g119400' => 'mtr', 'Medtr7g113330' => 'mtr', 'MELO3C021347.2' => 'cme', 'Migut.G00181' => 'egut', 'Migut.N00105' => 'egut', 'MSTRG.20427' => 'ama', 'MSTRG.21804' => 'ama', 'MSTRG.22820' => 'ama', 'MSTRG.24787' => 'ama', 'MSTRG.3932' => 'ama', 'Nitab4.5_0000137g0040' => 'nta', 'Nitab4.5_0000784g0070' => 'nta', 'Nitab4.5_0000976g0160' => 'nta', 'Nitab4.5_0003156g0030' => 'nta', 'Nitab4.5_0004985g0050' => 'nta', 'Nitab4.5_0013689g0010' => 'nta', 'Nn3g21381' => 'nnu', 'Nn4g22092' => 'nnu', 'Nn4g25934' => 'nnu', 'Oeu012103.1' => 'oeu', 'Oeu017205.1' => 'oeu', 'Oeu021110.1' => 'oeu', 'Oeu026306.3' => 'oeu', 'Oeu029258.2' => 'oeu', 'Os03g0856400' => 'osa', 'Os04g0401300' => 'osa', 'Peaxi162Scf00037g00716' => 'pax', 'Peaxi162Scf00314g00751' => 'pax', 'Peaxi162Scf00386g00413' => 'pax', 'PGR004G2575' => 'pgr', 'PGR031G1313' => 'pgr', 'PGSC0003DMG400014170' => 'stu', 'PGSC0003DMG401010657' => 'stu', 'PGSC0003DMG402010657' => 'stu', 'PGSC0003DMG402024742' => 'stu', 'Phvul.003G103000' => 'pvu', 'Phvul.006G091100' => 'pvu', 'Phvul.007G179400' => 'pvu', 'Phvul.009G246000' => 'pvu', 'Potri.005G028800' => 'ptr', 'Potri.005G029300' => 'ptr', 'Potri.005G029900' => 'ptr', 'Potri.008G216800' => 'ptr', 'Potri.010G023500' => 'ptr', 'Potri.013G020400' => 'ptr', 'Pp3c11_18670' => 'ppa', 'Pp3c7_4960' => 'ppa', 'Pp3c7_5010' => 'ppa', 'PRCOL_00002888' => 'pco', 'Prupe.1G139100' => 'ppe', 'Prupe.6G323700' => 'ppe', 'Psat0s2406g0160' => 'psa', 'Psat0s2745g0120' => 'psa', 'Psat1g153160' => 'psa', 'Psat4g027920' => 'psa', 'Psat4g027960' => 'psa', 'Psat5g008040' => 'psa', 'PSO017G3656' => 'pso', 'PSO170G1318' => 'pso', 'PSO210G0979' => 'pso', 'PSO210G3547' => 'pso', 'PSO478G1222' => 'pso', 'PSO832G1373' => 'pso', 'QL03p007418' => 'qlo', 'QL03p007686' => 'qlo', 'QL06p008290' => 'qlo', 'RcHm_v2.0_Chr3g0455191' => 'rch', 'RcHm_v2.0_Chr4g0421631' => 'rch', 'Rhsim04G0219500' => 'rsi', 'Rhsim07G0186000' => 'rsi', 'Rhsim12G0182200' => 'rsi', 'Sabra05G0033400' => 'sbr', 'Sabra10G0015300' => 'sbr', 'Sabra13G0022900' => 'sbr', 'SalBow2G1100' => 'sbo', 'SalBow2G1814' => 'sbo', 'SalBow5G0615' => 'sbo', 'SalBow7G3540' => 'sbo', 'Sc06g0003260' => 'sci', 'Sc09g0003110' => 'sci', 'Sc16g0008500' => 'sci', 'Sc19g0005050' => 'sci', 'Sed0013858' => 'sed', 'Sed0025025' => 'sed', 'SEGI_17247' => 'sgi', 'SEGI_23681' => 'sgi', 'SGA_v2.0_scaffold175G39291' => 'sas', 'SGA_v2.0_scaffold428G51520' => 'sas', 'SMO244G0080' => 'smo', 'Solyc01g067590.3' => 'sly', 'Solyc01g099280.3' => 'sly', 'Solyc03g118070.3' => 'sly', 'Sopen01g029540' => 'spe', 'Sopen01g042830' => 'spe', 'Sopen03g036970' => 'spe', 'Sp1g07630' => 'spa', 'TAR362G0013' => 'tar', 'TAR374G1492' => 'tar', 'TAR622G0599' => 'tar', 'TAR633G2083' => 'tar', 'THA.LOC104802551' => 'tha', 'THA.LOC104805883' => 'tha', 'THA.LOC104820842' => 'tha', 'THA.LOC104821769' => 'tha', 'Thecc.04G282100' => 'tca', 'Thecc.05G309800' => 'tca', 'Thhalv10007484m.g' => 'esa', 'TPR.G14622' => 'tpr', 'TPR.G31152' => 'tpr', 'TPR.G33182' => 'tpr', 'TPR.G5240' => 'tpr', 'TWI09G1206' => 'twi', 'TWI12G1293' => 'twi', 'TWI36G1555' => 'twi', 'TWI53G0864' => 'twi', 'TWI56G0250' => 'twi', 'unitig_37.g12391' => 'ugi', 'unitig_46.g18687' => 'ugi', 'vmacro04971' => 'vma', 'vmacro08124' => 'vma', 'vmacro16764' => 'vma', 'vmacro22209' => 'vma', 'VMungo0540G1377' => 'vmu', 'VMungo0720G0241' => 'vmu', 'VMungo0720G2177' => 'vmu', 'VMungo1215G2585' => 'vmu', 'VMungo1309G1195' => 'vmu', 'Zm00001eb045310' => 'zma', 'Zm00001eb064940' => 'zma', 'Zm00001eb084670' => 'zma', 'Zm00001eb130380' => 'zma', 'Zm00001eb210470' => 'zma', 'Zm00001eb271300' => 'zma', 'Zm00001eb345470' => 'zma', 'Zm00001eb357500' => 'zma', 'Zm00001eb421550' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001942' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001942' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001942' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001942' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151