Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '392', 'num_species' => '23' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'Ah.01g008150' => 'amhyb', 'arahy.Tifrunner.gnm1.ann1.06MZEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HEE39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0QZ25Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RQC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.497TK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4HXN36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5U3795' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ADW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B899F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGT6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6IU4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ0Q0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D661VL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2D6CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE068N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4V5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL4D0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INXA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP4QXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUU7A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5L10V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PCHE3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6JMF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYZ8NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q71493' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q82TWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5WE1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VKU54N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKDC23' => 'arhy', 'Atru.chr10.926' => 'acertr', 'Atru.chr12.953' => 'acertr', 'Atru.chr2.3198' => 'acertr', 'AUR62035422' => 'cqu', 'AUR62035709' => 'cqu', 'CANSAT35G1292' => 'cansat', 'CANSAT56G0820' => 'cansat', 'CANSAT64G1414' => 'cansat', 'CANSAT80G1436' => 'cansat', 'ClCG01G009750' => 'cla', 'ClCG05G014710' => 'cla', 'ClCG05G015880' => 'cla', 'ClCG08G001550' => 'cla', 'ClCG08G004530' => 'cla', 'ClCG09G011690' => 'cla', 'ClCG10G005540' => 'cla', 'ClCG10G008630' => 'cla', 'COL.COLO4_13231' => 'col', 'CsaV3_1G044430' => 'csa', 'CsaV3_1G045070' => 'csa', 'CsaV3_2G013960' => 'csa', 'CsaV3_3G000020' => 'csa', 'CsaV3_3G030680' => 'csa', 'CsaV3_4G027150' => 'csa', 'CsaV3_5G023560' => 'csa', 'CsaV3_5G024100' => 'csa', 'CsaV3_6G009900' => 'csa', 'DCAR_009785' => 'dca', 'DCAR_011368' => 'dca', 'DCAR_011369' => 'dca', 'DCAR_015799' => 'dca', 'DCAR_018898' => 'dca', 'EL10Ac9g21844' => 'bvu', 'FAN02G0208' => 'fan', 'FAN02G1352' => 'fan', 'Hma1.2p1_0035F.1_g022120' => 'hma', 'Manes.03G068716' => 'mes', 'MELO3C002765.2' => 'cme', 'MELO3C002895.2' => 'cme', 'MELO3C002985.2' => 'cme', 'MELO3C003790.2' => 'cme', 'MELO3C003865.2' => 'cme', 'MELO3C003883.2' => 'cme', 'MELO3C004014.2' => 'cme', 'MELO3C004976.2' => 'cme', 'MELO3C004979.2' => 'cme', 'MELO3C005010.2' => 'cme', 'MELO3C005087.2' => 'cme', 'MELO3C005110.2' => 'cme', 'MELO3C005115.2' => 'cme', 'MELO3C005119.2' => 'cme', 'MELO3C005280.2' => 'cme', 'MELO3C008122.2' => 'cme', 'MELO3C008205.2' => 'cme', 'MELO3C008276.2' => 'cme', 'MELO3C008463.2' => 'cme', 'MELO3C008748.2' => 'cme', 'MELO3C008755.2' => 'cme', 'MELO3C008868.2' => 'cme', 'MELO3C008893.2' => 'cme', 'MELO3C008915.2' => 'cme', 'MELO3C008989.2' => 'cme', 'MELO3C009040.2' => 'cme', 'MELO3C010138.2' => 'cme', 'MELO3C010406.2' => 'cme', 'MELO3C010513.2' => 'cme', 'MELO3C010531.2' => 'cme', 'MELO3C010541.2' => 'cme', 'MELO3C010558.2' => 'cme', 'MELO3C010562.2' => 'cme', 'MELO3C010596.2' => 'cme', 'MELO3C011581.2' => 'cme', 'MELO3C011642.2' => 'cme', 'MELO3C012637.2' => 'cme', 'MELO3C012830.2' => 'cme', 'MELO3C012907.2' => 'cme', 'MELO3C012981.2' => 'cme', 'MELO3C013062.2' => 'cme', 'MELO3C013106.2' => 'cme', 'MELO3C013166.2' => 'cme', 'MELO3C013181.2' => 'cme', 'MELO3C013412.2' => 'cme', 'MELO3C013643.2' => 'cme', 'MELO3C013978.2' => 'cme', 'MELO3C014135.2' => 'cme', 'MELO3C014887.2' => 'cme', 'MELO3C014919.2' => 'cme', 'MELO3C015092.2' => 'cme', 'MELO3C016228.2' => 'cme', 'MELO3C016240.2' => 'cme', 'MELO3C016461.2' => 'cme', 'MELO3C016511.2' => 'cme', 'MELO3C016611.2' => 'cme', 'MELO3C017335.2' => 'cme', 'MELO3C017494.2' => 'cme', 'MELO3C018204.2' => 'cme', 'MELO3C018304.2' => 'cme', 'MELO3C019025.2' => 'cme', 'MELO3C019042.2' => 'cme', 'MELO3C019084.2' => 'cme', 'MELO3C019088.2' => 'cme', 'MELO3C019268.2' => 'cme', 'MELO3C019393.2' => 'cme', 'MELO3C019530.2' => 'cme', 'MELO3C020019.2' => 'cme', 'MELO3C020165.2' => 'cme', 'MELO3C020454.2' => 'cme', 'MELO3C020647.2' => 'cme', 'MELO3C020687.2' => 'cme', 'MELO3C021049.2' => 'cme', 'MELO3C021105.2' => 'cme', 'MELO3C021833.2' => 'cme', 'MELO3C022191.2' => 'cme', 'MELO3C022645.2' => 'cme', 'MELO3C022940.2' => 'cme', 'MELO3C023000.2' => 'cme', 'MELO3C023118.2' => 'cme', 'MELO3C023134.2' => 'cme', 'MELO3C023670.2' => 'cme', 'MELO3C024650.2' => 'cme', 'MELO3C024801.2' => 'cme', 'MELO3C024802.2' => 'cme', 'MELO3C024858.2' => 'cme', 'MELO3C024931.2' => 'cme', 'MELO3C025001.2' => 'cme', 'MELO3C025329.2' => 'cme', 'MELO3C025382.2' => 'cme', 'MELO3C025455.2' => 'cme', 'MELO3C025792.2' => 'cme', 'MELO3C025979.2' => 'cme', 'MELO3C026040.2' => 'cme', 'MELO3C026069.2' => 'cme', 'MELO3C026091.2' => 'cme', 'MELO3C026719.2' => 'cme', 'MELO3C027071.2' => 'cme', 'MELO3C027449.2' => 'cme', 'MELO3C027530.2' => 'cme', 'MELO3C027591.2' => 'cme', 'MELO3C027597.2' => 'cme', 'MELO3C027706.2' => 'cme', 'MELO3C027743.2' => 'cme', 'MELO3C027758.2' => 'cme', 'MELO3C027794.2' => 'cme', 'MELO3C028011.2' => 'cme', 'MELO3C028082.2' => 'cme', 'MELO3C028097.2' => 'cme', 'MELO3C028136.2' => 'cme', 'MELO3C028411.2' => 'cme', 'MELO3C028435.2' => 'cme', 'MELO3C028437.2' => 'cme', 'MELO3C028443.2' => 'cme', 'MELO3C028451.2' => 'cme', 'MELO3C028455.2' => 'cme', 'MELO3C028467.2' => 'cme', 'MELO3C028477.2' => 'cme', 'MELO3C028479.2' => 'cme', 'MELO3C028481.2' => 'cme', 'MELO3C028533.2' => 'cme', 'MELO3C028659.2' => 'cme', 'MELO3C028665.2' => 'cme', 'MELO3C028669.2' => 'cme', 'MELO3C028911.2' => 'cme', 'MELO3C028964.2' => 'cme', 'MELO3C028975.2' => 'cme', 'MELO3C029013.2' => 'cme', 'MELO3C029065.2' => 'cme', 'MELO3C029074.2' => 'cme', 'MELO3C029091.2' => 'cme', 'MELO3C029104.2' => 'cme', 'MELO3C029115.2' => 'cme', 'MELO3C029116.2' => 'cme', 'MELO3C029156.2' => 'cme', 'MELO3C029207.2' => 'cme', 'MELO3C029219.2' => 'cme', 'MELO3C029416.2' => 'cme', 'MELO3C029428.2' => 'cme', 'MELO3C029611.2' => 'cme', 'MELO3C029623.2' => 'cme', 'MELO3C029625.2' => 'cme', 'MELO3C029646.2' => 'cme', 'MELO3C029657.2' => 'cme', 'MELO3C029671.2' => 'cme', 'MELO3C029732.2' => 'cme', 'MELO3C029815.2' => 'cme', 'MELO3C029855.2' => 'cme', 'MELO3C029869.2' => 'cme', 'MELO3C029897.2' => 'cme', 'MELO3C029917.2' => 'cme', 'MELO3C029951.2' => 'cme', 'MELO3C029974.2' => 'cme', 'MELO3C030054.2' => 'cme', 'MELO3C030087.2' => 'cme', 'MELO3C030092.2' => 'cme', 'MELO3C030093.2' => 'cme', 'MELO3C030121.2' => 'cme', 'MELO3C030130.2' => 'cme', 'MELO3C030177.2' => 'cme', 'MELO3C030189.2' => 'cme', 'MELO3C030196.2' => 'cme', 'MELO3C030223.2' => 'cme', 'MELO3C030245.2' => 'cme', 'MELO3C030295.2' => 'cme', 'MELO3C030296.2' => 'cme', 'MELO3C030525.2' => 'cme', 'MELO3C030547.2' => 'cme', 'MELO3C030555.2' => 'cme', 'MELO3C030689.2' => 'cme', 'MELO3C030691.2' => 'cme', 'MELO3C030792.2' => 'cme', 'MELO3C030820.2' => 'cme', 'MELO3C030843.2' => 'cme', 'MELO3C030846.2' => 'cme', 'MELO3C030848.2' => 'cme', 'MELO3C030906.2' => 'cme', 'MELO3C030921.2' => 'cme', 'MELO3C030942.2' => 'cme', 'MELO3C030947.2' => 'cme', 'MELO3C031064.2' => 'cme', 'MELO3C031238.2' => 'cme', 'MELO3C031251.2' => 'cme', 'MELO3C031381.2' => 'cme', 'MELO3C031433.2' => 'cme', 'MELO3C031453.2' => 'cme', 'MELO3C031454.2' => 'cme', 'MELO3C031480.2' => 'cme', 'MELO3C031481.2' => 'cme', 'MELO3C031500.2' => 'cme', 'MELO3C031504.2' => 'cme', 'MELO3C031509.2' => 'cme', 'MELO3C031510.2' => 'cme', 'MELO3C031842.2' => 'cme', 'MELO3C031965.2' => 'cme', 'MELO3C031993.2' => 'cme', 'MELO3C032022.2' => 'cme', 'MELO3C032059.2' => 'cme', 'MELO3C032144.2' => 'cme', 'MELO3C032148.2' => 'cme', 'MELO3C032180.2' => 'cme', 'MELO3C032200.2' => 'cme', 'MELO3C032206.2' => 'cme', 'MELO3C032207.2' => 'cme', 'MELO3C032209.2' => 'cme', 'MELO3C032220.2' => 'cme', 'MELO3C032240.2' => 'cme', 'MELO3C032289.2' => 'cme', 'MELO3C032292.2' => 'cme', 'MELO3C032494.2' => 'cme', 'MELO3C032542.2' => 'cme', 'MELO3C032596.2' => 'cme', 'MELO3C032606.2' => 'cme', 'MELO3C032644.2' => 'cme', 'MELO3C032654.2' => 'cme', 'MELO3C032682.2' => 'cme', 'MELO3C032742.2' => 'cme', 'MELO3C032758.2' => 'cme', 'MELO3C032795.2' => 'cme', 'MELO3C032796.2' => 'cme', 'MELO3C032954.2' => 'cme', 'MELO3C032969.2' => 'cme', 'MELO3C033016.2' => 'cme', 'MELO3C033145.2' => 'cme', 'MELO3C033146.2' => 'cme', 'MELO3C033170.2' => 'cme', 'MELO3C033188.2' => 'cme', 'MELO3C033199.2' => 'cme', 'MELO3C033211.2' => 'cme', 'MELO3C033212.2' => 'cme', 'MELO3C033261.2' => 'cme', 'MELO3C033333.2' => 'cme', 'MELO3C033364.2' => 'cme', 'MELO3C033377.2' => 'cme', 'MELO3C033381.2' => 'cme', 'MELO3C033398.2' => 'cme', 'MELO3C033417.2' => 'cme', 'MELO3C033434.2' => 'cme', 'MELO3C033441.2' => 'cme', 'MELO3C033442.2' => 'cme', 'MELO3C033492.2' => 'cme', 'MELO3C033629.2' => 'cme', 'MELO3C033660.2' => 'cme', 'MELO3C033738.2' => 'cme', 'MELO3C033757.2' => 'cme', 'MELO3C033795.2' => 'cme', 'MELO3C033803.2' => 'cme', 'MELO3C033818.2' => 'cme', 'MELO3C033868.2' => 'cme', 'MELO3C033877.2' => 'cme', 'MELO3C033906.2' => 'cme', 'MELO3C033956.2' => 'cme', 'MELO3C034080.2' => 'cme', 'MELO3C034081.2' => 'cme', 'MELO3C034202.2' => 'cme', 'MELO3C034256.2' => 'cme', 'MELO3C034476.2' => 'cme', 'MELO3C034483.2' => 'cme', 'MELO3C034548.2' => 'cme', 'MELO3C034623.2' => 'cme', 'MELO3C034756.2' => 'cme', 'MELO3C034777.2' => 'cme', 'MELO3C034778.2' => 'cme', 'MELO3C034889.2' => 'cme', 'MELO3C034921.2' => 'cme', 'MELO3C034963.2' => 'cme', 'MELO3C034967.2' => 'cme', 'MELO3C035001.2' => 'cme', 'MELO3C035042.2' => 'cme', 'MELO3C035045.2' => 'cme', 'MELO3C035101.2' => 'cme', 'MELO3C035116.2' => 'cme', 'MELO3C035124.2' => 'cme', 'MELO3C035126.2' => 'cme', 'MELO3C035147.2' => 'cme', 'MELO3C035151.2' => 'cme', 'MELO3C035327.2' => 'cme', 'MELO3C035430.2' => 'cme', 'MELO3C035431.2' => 'cme', 'MELO3C035439.2' => 'cme', 'MELO3C035451.2' => 'cme', 'MELO3C035488.2' => 'cme', 'MELO3C035496.2' => 'cme', 'MELO3C035502.2' => 'cme', 'MELO3C035556.2' => 'cme', 'MELO3C035564.2' => 'cme', 'MELO3C035570.2' => 'cme', 'MELO3C035586.2' => 'cme', 'MELO3C035588.2' => 'cme', 'MELO3C035605.2' => 'cme', 'MELO3C035618.2' => 'cme', 'MELO3C035642.2' => 'cme', 'MELO3C035660.2' => 'cme', 'MELO3C035680.2' => 'cme', 'MELO3C035691.2' => 'cme', 'Nn1g01000' => 'nnu', 'Nn5g27284' => 'nnu', 'Psat3g065920' => 'psa', 'PSO832G2165' => 'pso', 'RcHm_v2.0_Chr7g0205671' => 'rch', 'Sed0003532' => 'sed', 'Sed0005282' => 'sed', 'Sed0005350' => 'sed', 'Sed0005563' => 'sed', 'Sed0005845' => 'sed', 'Sed0007091' => 'sed', 'Sed0007178' => 'sed', 'Sed0008442' => 'sed', 'Sed0011151' => 'sed', 'Sed0012349' => 'sed', 'Sed0015712' => 'sed', 'Sed0017352' => 'sed', 'Sed0017479' => 'sed', 'Sed0019314' => 'sed', 'Sed0021191' => 'sed', 'Sed0024321' => 'sed', 'Sed0026584' => 'sed', 'SHI25566' => 'shi', 'Thecc.05G132700' => 'tca', 'Thecc.08G138100' => 'tca', 'TPR.G13250' => 'tpr', 'TPR.G21616' => 'tpr', 'TWI18G0893' => 'twi', 'TWI53G1875' => 'twi', 'TWI63G1547' => 'twi' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001651', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001651' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '392', 'num_species' => '23' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001651' ) ), 'genes' => array( 'Ah.01g008150' => 'amhyb', 'arahy.Tifrunner.gnm1.ann1.06MZEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HEE39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0QZ25Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RQC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.497TK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4HXN36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5U3795' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ADW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B899F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGT6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6IU4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ0Q0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D661VL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2D6CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE068N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4V5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL4D0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INXA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP4QXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUU7A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5L10V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PCHE3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6JMF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYZ8NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q71493' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q82TWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5WE1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VKU54N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKDC23' => 'arhy', 'Atru.chr10.926' => 'acertr', 'Atru.chr12.953' => 'acertr', 'Atru.chr2.3198' => 'acertr', 'AUR62035422' => 'cqu', 'AUR62035709' => 'cqu', 'CANSAT35G1292' => 'cansat', 'CANSAT56G0820' => 'cansat', 'CANSAT64G1414' => 'cansat', 'CANSAT80G1436' => 'cansat', 'ClCG01G009750' => 'cla', 'ClCG05G014710' => 'cla', 'ClCG05G015880' => 'cla', 'ClCG08G001550' => 'cla', 'ClCG08G004530' => 'cla', 'ClCG09G011690' => 'cla', 'ClCG10G005540' => 'cla', 'ClCG10G008630' => 'cla', 'COL.COLO4_13231' => 'col', 'CsaV3_1G044430' => 'csa', 'CsaV3_1G045070' => 'csa', 'CsaV3_2G013960' => 'csa', 'CsaV3_3G000020' => 'csa', 'CsaV3_3G030680' => 'csa', 'CsaV3_4G027150' => 'csa', 'CsaV3_5G023560' => 'csa', 'CsaV3_5G024100' => 'csa', 'CsaV3_6G009900' => 'csa', 'DCAR_009785' => 'dca', 'DCAR_011368' => 'dca', 'DCAR_011369' => 'dca', 'DCAR_015799' => 'dca', 'DCAR_018898' => 'dca', 'EL10Ac9g21844' => 'bvu', 'FAN02G0208' => 'fan', 'FAN02G1352' => 'fan', 'Hma1.2p1_0035F.1_g022120' => 'hma', 'Manes.03G068716' => 'mes', 'MELO3C002765.2' => 'cme', 'MELO3C002895.2' => 'cme', 'MELO3C002985.2' => 'cme', 'MELO3C003790.2' => 'cme', 'MELO3C003865.2' => 'cme', 'MELO3C003883.2' => 'cme', 'MELO3C004014.2' => 'cme', 'MELO3C004976.2' => 'cme', 'MELO3C004979.2' => 'cme', 'MELO3C005010.2' => 'cme', 'MELO3C005087.2' => 'cme', 'MELO3C005110.2' => 'cme', 'MELO3C005115.2' => 'cme', 'MELO3C005119.2' => 'cme', 'MELO3C005280.2' => 'cme', 'MELO3C008122.2' => 'cme', 'MELO3C008205.2' => 'cme', 'MELO3C008276.2' => 'cme', 'MELO3C008463.2' => 'cme', 'MELO3C008748.2' => 'cme', 'MELO3C008755.2' => 'cme', 'MELO3C008868.2' => 'cme', 'MELO3C008893.2' => 'cme', 'MELO3C008915.2' => 'cme', 'MELO3C008989.2' => 'cme', 'MELO3C009040.2' => 'cme', 'MELO3C010138.2' => 'cme', 'MELO3C010406.2' => 'cme', 'MELO3C010513.2' => 'cme', 'MELO3C010531.2' => 'cme', 'MELO3C010541.2' => 'cme', 'MELO3C010558.2' => 'cme', 'MELO3C010562.2' => 'cme', 'MELO3C010596.2' => 'cme', 'MELO3C011581.2' => 'cme', 'MELO3C011642.2' => 'cme', 'MELO3C012637.2' => 'cme', 'MELO3C012830.2' => 'cme', 'MELO3C012907.2' => 'cme', 'MELO3C012981.2' => 'cme', 'MELO3C013062.2' => 'cme', 'MELO3C013106.2' => 'cme', 'MELO3C013166.2' => 'cme', 'MELO3C013181.2' => 'cme', 'MELO3C013412.2' => 'cme', 'MELO3C013643.2' => 'cme', 'MELO3C013978.2' => 'cme', 'MELO3C014135.2' => 'cme', 'MELO3C014887.2' => 'cme', 'MELO3C014919.2' => 'cme', 'MELO3C015092.2' => 'cme', 'MELO3C016228.2' => 'cme', 'MELO3C016240.2' => 'cme', 'MELO3C016461.2' => 'cme', 'MELO3C016511.2' => 'cme', 'MELO3C016611.2' => 'cme', 'MELO3C017335.2' => 'cme', 'MELO3C017494.2' => 'cme', 'MELO3C018204.2' => 'cme', 'MELO3C018304.2' => 'cme', 'MELO3C019025.2' => 'cme', 'MELO3C019042.2' => 'cme', 'MELO3C019084.2' => 'cme', 'MELO3C019088.2' => 'cme', 'MELO3C019268.2' => 'cme', 'MELO3C019393.2' => 'cme', 'MELO3C019530.2' => 'cme', 'MELO3C020019.2' => 'cme', 'MELO3C020165.2' => 'cme', 'MELO3C020454.2' => 'cme', 'MELO3C020647.2' => 'cme', 'MELO3C020687.2' => 'cme', 'MELO3C021049.2' => 'cme', 'MELO3C021105.2' => 'cme', 'MELO3C021833.2' => 'cme', 'MELO3C022191.2' => 'cme', 'MELO3C022645.2' => 'cme', 'MELO3C022940.2' => 'cme', 'MELO3C023000.2' => 'cme', 'MELO3C023118.2' => 'cme', 'MELO3C023134.2' => 'cme', 'MELO3C023670.2' => 'cme', 'MELO3C024650.2' => 'cme', 'MELO3C024801.2' => 'cme', 'MELO3C024802.2' => 'cme', 'MELO3C024858.2' => 'cme', 'MELO3C024931.2' => 'cme', 'MELO3C025001.2' => 'cme', 'MELO3C025329.2' => 'cme', 'MELO3C025382.2' => 'cme', 'MELO3C025455.2' => 'cme', 'MELO3C025792.2' => 'cme', 'MELO3C025979.2' => 'cme', 'MELO3C026040.2' => 'cme', 'MELO3C026069.2' => 'cme', 'MELO3C026091.2' => 'cme', 'MELO3C026719.2' => 'cme', 'MELO3C027071.2' => 'cme', 'MELO3C027449.2' => 'cme', 'MELO3C027530.2' => 'cme', 'MELO3C027591.2' => 'cme', 'MELO3C027597.2' => 'cme', 'MELO3C027706.2' => 'cme', 'MELO3C027743.2' => 'cme', 'MELO3C027758.2' => 'cme', 'MELO3C027794.2' => 'cme', 'MELO3C028011.2' => 'cme', 'MELO3C028082.2' => 'cme', 'MELO3C028097.2' => 'cme', 'MELO3C028136.2' => 'cme', 'MELO3C028411.2' => 'cme', 'MELO3C028435.2' => 'cme', 'MELO3C028437.2' => 'cme', 'MELO3C028443.2' => 'cme', 'MELO3C028451.2' => 'cme', 'MELO3C028455.2' => 'cme', 'MELO3C028467.2' => 'cme', 'MELO3C028477.2' => 'cme', 'MELO3C028479.2' => 'cme', 'MELO3C028481.2' => 'cme', 'MELO3C028533.2' => 'cme', 'MELO3C028659.2' => 'cme', 'MELO3C028665.2' => 'cme', 'MELO3C028669.2' => 'cme', 'MELO3C028911.2' => 'cme', 'MELO3C028964.2' => 'cme', 'MELO3C028975.2' => 'cme', 'MELO3C029013.2' => 'cme', 'MELO3C029065.2' => 'cme', 'MELO3C029074.2' => 'cme', 'MELO3C029091.2' => 'cme', 'MELO3C029104.2' => 'cme', 'MELO3C029115.2' => 'cme', 'MELO3C029116.2' => 'cme', 'MELO3C029156.2' => 'cme', 'MELO3C029207.2' => 'cme', 'MELO3C029219.2' => 'cme', 'MELO3C029416.2' => 'cme', 'MELO3C029428.2' => 'cme', 'MELO3C029611.2' => 'cme', 'MELO3C029623.2' => 'cme', 'MELO3C029625.2' => 'cme', 'MELO3C029646.2' => 'cme', 'MELO3C029657.2' => 'cme', 'MELO3C029671.2' => 'cme', 'MELO3C029732.2' => 'cme', 'MELO3C029815.2' => 'cme', 'MELO3C029855.2' => 'cme', 'MELO3C029869.2' => 'cme', 'MELO3C029897.2' => 'cme', 'MELO3C029917.2' => 'cme', 'MELO3C029951.2' => 'cme', 'MELO3C029974.2' => 'cme', 'MELO3C030054.2' => 'cme', 'MELO3C030087.2' => 'cme', 'MELO3C030092.2' => 'cme', 'MELO3C030093.2' => 'cme', 'MELO3C030121.2' => 'cme', 'MELO3C030130.2' => 'cme', 'MELO3C030177.2' => 'cme', 'MELO3C030189.2' => 'cme', 'MELO3C030196.2' => 'cme', 'MELO3C030223.2' => 'cme', 'MELO3C030245.2' => 'cme', 'MELO3C030295.2' => 'cme', 'MELO3C030296.2' => 'cme', 'MELO3C030525.2' => 'cme', 'MELO3C030547.2' => 'cme', 'MELO3C030555.2' => 'cme', 'MELO3C030689.2' => 'cme', 'MELO3C030691.2' => 'cme', 'MELO3C030792.2' => 'cme', 'MELO3C030820.2' => 'cme', 'MELO3C030843.2' => 'cme', 'MELO3C030846.2' => 'cme', 'MELO3C030848.2' => 'cme', 'MELO3C030906.2' => 'cme', 'MELO3C030921.2' => 'cme', 'MELO3C030942.2' => 'cme', 'MELO3C030947.2' => 'cme', 'MELO3C031064.2' => 'cme', 'MELO3C031238.2' => 'cme', 'MELO3C031251.2' => 'cme', 'MELO3C031381.2' => 'cme', 'MELO3C031433.2' => 'cme', 'MELO3C031453.2' => 'cme', 'MELO3C031454.2' => 'cme', 'MELO3C031480.2' => 'cme', 'MELO3C031481.2' => 'cme', 'MELO3C031500.2' => 'cme', 'MELO3C031504.2' => 'cme', 'MELO3C031509.2' => 'cme', 'MELO3C031510.2' => 'cme', 'MELO3C031842.2' => 'cme', 'MELO3C031965.2' => 'cme', 'MELO3C031993.2' => 'cme', 'MELO3C032022.2' => 'cme', 'MELO3C032059.2' => 'cme', 'MELO3C032144.2' => 'cme', 'MELO3C032148.2' => 'cme', 'MELO3C032180.2' => 'cme', 'MELO3C032200.2' => 'cme', 'MELO3C032206.2' => 'cme', 'MELO3C032207.2' => 'cme', 'MELO3C032209.2' => 'cme', 'MELO3C032220.2' => 'cme', 'MELO3C032240.2' => 'cme', 'MELO3C032289.2' => 'cme', 'MELO3C032292.2' => 'cme', 'MELO3C032494.2' => 'cme', 'MELO3C032542.2' => 'cme', 'MELO3C032596.2' => 'cme', 'MELO3C032606.2' => 'cme', 'MELO3C032644.2' => 'cme', 'MELO3C032654.2' => 'cme', 'MELO3C032682.2' => 'cme', 'MELO3C032742.2' => 'cme', 'MELO3C032758.2' => 'cme', 'MELO3C032795.2' => 'cme', 'MELO3C032796.2' => 'cme', 'MELO3C032954.2' => 'cme', 'MELO3C032969.2' => 'cme', 'MELO3C033016.2' => 'cme', 'MELO3C033145.2' => 'cme', 'MELO3C033146.2' => 'cme', 'MELO3C033170.2' => 'cme', 'MELO3C033188.2' => 'cme', 'MELO3C033199.2' => 'cme', 'MELO3C033211.2' => 'cme', 'MELO3C033212.2' => 'cme', 'MELO3C033261.2' => 'cme', 'MELO3C033333.2' => 'cme', 'MELO3C033364.2' => 'cme', 'MELO3C033377.2' => 'cme', 'MELO3C033381.2' => 'cme', 'MELO3C033398.2' => 'cme', 'MELO3C033417.2' => 'cme', 'MELO3C033434.2' => 'cme', 'MELO3C033441.2' => 'cme', 'MELO3C033442.2' => 'cme', 'MELO3C033492.2' => 'cme', 'MELO3C033629.2' => 'cme', 'MELO3C033660.2' => 'cme', 'MELO3C033738.2' => 'cme', 'MELO3C033757.2' => 'cme', 'MELO3C033795.2' => 'cme', 'MELO3C033803.2' => 'cme', 'MELO3C033818.2' => 'cme', 'MELO3C033868.2' => 'cme', 'MELO3C033877.2' => 'cme', 'MELO3C033906.2' => 'cme', 'MELO3C033956.2' => 'cme', 'MELO3C034080.2' => 'cme', 'MELO3C034081.2' => 'cme', 'MELO3C034202.2' => 'cme', 'MELO3C034256.2' => 'cme', 'MELO3C034476.2' => 'cme', 'MELO3C034483.2' => 'cme', 'MELO3C034548.2' => 'cme', 'MELO3C034623.2' => 'cme', 'MELO3C034756.2' => 'cme', 'MELO3C034777.2' => 'cme', 'MELO3C034778.2' => 'cme', 'MELO3C034889.2' => 'cme', 'MELO3C034921.2' => 'cme', 'MELO3C034963.2' => 'cme', 'MELO3C034967.2' => 'cme', 'MELO3C035001.2' => 'cme', 'MELO3C035042.2' => 'cme', 'MELO3C035045.2' => 'cme', 'MELO3C035101.2' => 'cme', 'MELO3C035116.2' => 'cme', 'MELO3C035124.2' => 'cme', 'MELO3C035126.2' => 'cme', 'MELO3C035147.2' => 'cme', 'MELO3C035151.2' => 'cme', 'MELO3C035327.2' => 'cme', 'MELO3C035430.2' => 'cme', 'MELO3C035431.2' => 'cme', 'MELO3C035439.2' => 'cme', 'MELO3C035451.2' => 'cme', 'MELO3C035488.2' => 'cme', 'MELO3C035496.2' => 'cme', 'MELO3C035502.2' => 'cme', 'MELO3C035556.2' => 'cme', 'MELO3C035564.2' => 'cme', 'MELO3C035570.2' => 'cme', 'MELO3C035586.2' => 'cme', 'MELO3C035588.2' => 'cme', 'MELO3C035605.2' => 'cme', 'MELO3C035618.2' => 'cme', 'MELO3C035642.2' => 'cme', 'MELO3C035660.2' => 'cme', 'MELO3C035680.2' => 'cme', 'MELO3C035691.2' => 'cme', 'Nn1g01000' => 'nnu', 'Nn5g27284' => 'nnu', 'Psat3g065920' => 'psa', 'PSO832G2165' => 'pso', 'RcHm_v2.0_Chr7g0205671' => 'rch', 'Sed0003532' => 'sed', 'Sed0005282' => 'sed', 'Sed0005350' => 'sed', 'Sed0005563' => 'sed', 'Sed0005845' => 'sed', 'Sed0007091' => 'sed', 'Sed0007178' => 'sed', 'Sed0008442' => 'sed', 'Sed0011151' => 'sed', 'Sed0012349' => 'sed', 'Sed0015712' => 'sed', 'Sed0017352' => 'sed', 'Sed0017479' => 'sed', 'Sed0019314' => 'sed', 'Sed0021191' => 'sed', 'Sed0024321' => 'sed', 'Sed0026584' => 'sed', 'SHI25566' => 'shi', 'Thecc.05G132700' => 'tca', 'Thecc.08G138100' => 'tca', 'TPR.G13250' => 'tpr', 'TPR.G21616' => 'tpr', 'TWI18G0893' => 'twi', 'TWI53G1875' => 'twi', 'TWI63G1547' => 'twi' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001651' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001651' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001651' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001651' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '392', 'num_species' => '23' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'Ah.01g008150' => 'amhyb', 'arahy.Tifrunner.gnm1.ann1.06MZEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HEE39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0QZ25Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RQC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.497TK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4HXN36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5U3795' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ADW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B899F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGT6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6IU4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ0Q0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D661VL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2D6CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE068N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4V5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL4D0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INXA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP4QXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUU7A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5L10V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PCHE3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6JMF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYZ8NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q71493' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q82TWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5WE1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VKU54N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKDC23' => 'arhy', 'Atru.chr10.926' => 'acertr', 'Atru.chr12.953' => 'acertr', 'Atru.chr2.3198' => 'acertr', 'AUR62035422' => 'cqu', 'AUR62035709' => 'cqu', 'CANSAT35G1292' => 'cansat', 'CANSAT56G0820' => 'cansat', 'CANSAT64G1414' => 'cansat', 'CANSAT80G1436' => 'cansat', 'ClCG01G009750' => 'cla', 'ClCG05G014710' => 'cla', 'ClCG05G015880' => 'cla', 'ClCG08G001550' => 'cla', 'ClCG08G004530' => 'cla', 'ClCG09G011690' => 'cla', 'ClCG10G005540' => 'cla', 'ClCG10G008630' => 'cla', 'COL.COLO4_13231' => 'col', 'CsaV3_1G044430' => 'csa', 'CsaV3_1G045070' => 'csa', 'CsaV3_2G013960' => 'csa', 'CsaV3_3G000020' => 'csa', 'CsaV3_3G030680' => 'csa', 'CsaV3_4G027150' => 'csa', 'CsaV3_5G023560' => 'csa', 'CsaV3_5G024100' => 'csa', 'CsaV3_6G009900' => 'csa', 'DCAR_009785' => 'dca', 'DCAR_011368' => 'dca', 'DCAR_011369' => 'dca', 'DCAR_015799' => 'dca', 'DCAR_018898' => 'dca', 'EL10Ac9g21844' => 'bvu', 'FAN02G0208' => 'fan', 'FAN02G1352' => 'fan', 'Hma1.2p1_0035F.1_g022120' => 'hma', 'Manes.03G068716' => 'mes', 'MELO3C002765.2' => 'cme', 'MELO3C002895.2' => 'cme', 'MELO3C002985.2' => 'cme', 'MELO3C003790.2' => 'cme', 'MELO3C003865.2' => 'cme', 'MELO3C003883.2' => 'cme', 'MELO3C004014.2' => 'cme', 'MELO3C004976.2' => 'cme', 'MELO3C004979.2' => 'cme', 'MELO3C005010.2' => 'cme', 'MELO3C005087.2' => 'cme', 'MELO3C005110.2' => 'cme', 'MELO3C005115.2' => 'cme', 'MELO3C005119.2' => 'cme', 'MELO3C005280.2' => 'cme', 'MELO3C008122.2' => 'cme', 'MELO3C008205.2' => 'cme', 'MELO3C008276.2' => 'cme', 'MELO3C008463.2' => 'cme', 'MELO3C008748.2' => 'cme', 'MELO3C008755.2' => 'cme', 'MELO3C008868.2' => 'cme', 'MELO3C008893.2' => 'cme', 'MELO3C008915.2' => 'cme', 'MELO3C008989.2' => 'cme', 'MELO3C009040.2' => 'cme', 'MELO3C010138.2' => 'cme', 'MELO3C010406.2' => 'cme', 'MELO3C010513.2' => 'cme', 'MELO3C010531.2' => 'cme', 'MELO3C010541.2' => 'cme', 'MELO3C010558.2' => 'cme', 'MELO3C010562.2' => 'cme', 'MELO3C010596.2' => 'cme', 'MELO3C011581.2' => 'cme', 'MELO3C011642.2' => 'cme', 'MELO3C012637.2' => 'cme', 'MELO3C012830.2' => 'cme', 'MELO3C012907.2' => 'cme', 'MELO3C012981.2' => 'cme', 'MELO3C013062.2' => 'cme', 'MELO3C013106.2' => 'cme', 'MELO3C013166.2' => 'cme', 'MELO3C013181.2' => 'cme', 'MELO3C013412.2' => 'cme', 'MELO3C013643.2' => 'cme', 'MELO3C013978.2' => 'cme', 'MELO3C014135.2' => 'cme', 'MELO3C014887.2' => 'cme', 'MELO3C014919.2' => 'cme', 'MELO3C015092.2' => 'cme', 'MELO3C016228.2' => 'cme', 'MELO3C016240.2' => 'cme', 'MELO3C016461.2' => 'cme', 'MELO3C016511.2' => 'cme', 'MELO3C016611.2' => 'cme', 'MELO3C017335.2' => 'cme', 'MELO3C017494.2' => 'cme', 'MELO3C018204.2' => 'cme', 'MELO3C018304.2' => 'cme', 'MELO3C019025.2' => 'cme', 'MELO3C019042.2' => 'cme', 'MELO3C019084.2' => 'cme', 'MELO3C019088.2' => 'cme', 'MELO3C019268.2' => 'cme', 'MELO3C019393.2' => 'cme', 'MELO3C019530.2' => 'cme', 'MELO3C020019.2' => 'cme', 'MELO3C020165.2' => 'cme', 'MELO3C020454.2' => 'cme', 'MELO3C020647.2' => 'cme', 'MELO3C020687.2' => 'cme', 'MELO3C021049.2' => 'cme', 'MELO3C021105.2' => 'cme', 'MELO3C021833.2' => 'cme', 'MELO3C022191.2' => 'cme', 'MELO3C022645.2' => 'cme', 'MELO3C022940.2' => 'cme', 'MELO3C023000.2' => 'cme', 'MELO3C023118.2' => 'cme', 'MELO3C023134.2' => 'cme', 'MELO3C023670.2' => 'cme', 'MELO3C024650.2' => 'cme', 'MELO3C024801.2' => 'cme', 'MELO3C024802.2' => 'cme', 'MELO3C024858.2' => 'cme', 'MELO3C024931.2' => 'cme', 'MELO3C025001.2' => 'cme', 'MELO3C025329.2' => 'cme', 'MELO3C025382.2' => 'cme', 'MELO3C025455.2' => 'cme', 'MELO3C025792.2' => 'cme', 'MELO3C025979.2' => 'cme', 'MELO3C026040.2' => 'cme', 'MELO3C026069.2' => 'cme', 'MELO3C026091.2' => 'cme', 'MELO3C026719.2' => 'cme', 'MELO3C027071.2' => 'cme', 'MELO3C027449.2' => 'cme', 'MELO3C027530.2' => 'cme', 'MELO3C027591.2' => 'cme', 'MELO3C027597.2' => 'cme', 'MELO3C027706.2' => 'cme', 'MELO3C027743.2' => 'cme', 'MELO3C027758.2' => 'cme', 'MELO3C027794.2' => 'cme', 'MELO3C028011.2' => 'cme', 'MELO3C028082.2' => 'cme', 'MELO3C028097.2' => 'cme', 'MELO3C028136.2' => 'cme', 'MELO3C028411.2' => 'cme', 'MELO3C028435.2' => 'cme', 'MELO3C028437.2' => 'cme', 'MELO3C028443.2' => 'cme', 'MELO3C028451.2' => 'cme', 'MELO3C028455.2' => 'cme', 'MELO3C028467.2' => 'cme', 'MELO3C028477.2' => 'cme', 'MELO3C028479.2' => 'cme', 'MELO3C028481.2' => 'cme', 'MELO3C028533.2' => 'cme', 'MELO3C028659.2' => 'cme', 'MELO3C028665.2' => 'cme', 'MELO3C028669.2' => 'cme', 'MELO3C028911.2' => 'cme', 'MELO3C028964.2' => 'cme', 'MELO3C028975.2' => 'cme', 'MELO3C029013.2' => 'cme', 'MELO3C029065.2' => 'cme', 'MELO3C029074.2' => 'cme', 'MELO3C029091.2' => 'cme', 'MELO3C029104.2' => 'cme', 'MELO3C029115.2' => 'cme', 'MELO3C029116.2' => 'cme', 'MELO3C029156.2' => 'cme', 'MELO3C029207.2' => 'cme', 'MELO3C029219.2' => 'cme', 'MELO3C029416.2' => 'cme', 'MELO3C029428.2' => 'cme', 'MELO3C029611.2' => 'cme', 'MELO3C029623.2' => 'cme', 'MELO3C029625.2' => 'cme', 'MELO3C029646.2' => 'cme', 'MELO3C029657.2' => 'cme', 'MELO3C029671.2' => 'cme', 'MELO3C029732.2' => 'cme', 'MELO3C029815.2' => 'cme', 'MELO3C029855.2' => 'cme', 'MELO3C029869.2' => 'cme', 'MELO3C029897.2' => 'cme', 'MELO3C029917.2' => 'cme', 'MELO3C029951.2' => 'cme', 'MELO3C029974.2' => 'cme', 'MELO3C030054.2' => 'cme', 'MELO3C030087.2' => 'cme', 'MELO3C030092.2' => 'cme', 'MELO3C030093.2' => 'cme', 'MELO3C030121.2' => 'cme', 'MELO3C030130.2' => 'cme', 'MELO3C030177.2' => 'cme', 'MELO3C030189.2' => 'cme', 'MELO3C030196.2' => 'cme', 'MELO3C030223.2' => 'cme', 'MELO3C030245.2' => 'cme', 'MELO3C030295.2' => 'cme', 'MELO3C030296.2' => 'cme', 'MELO3C030525.2' => 'cme', 'MELO3C030547.2' => 'cme', 'MELO3C030555.2' => 'cme', 'MELO3C030689.2' => 'cme', 'MELO3C030691.2' => 'cme', 'MELO3C030792.2' => 'cme', 'MELO3C030820.2' => 'cme', 'MELO3C030843.2' => 'cme', 'MELO3C030846.2' => 'cme', 'MELO3C030848.2' => 'cme', 'MELO3C030906.2' => 'cme', 'MELO3C030921.2' => 'cme', 'MELO3C030942.2' => 'cme', 'MELO3C030947.2' => 'cme', 'MELO3C031064.2' => 'cme', 'MELO3C031238.2' => 'cme', 'MELO3C031251.2' => 'cme', 'MELO3C031381.2' => 'cme', 'MELO3C031433.2' => 'cme', 'MELO3C031453.2' => 'cme', 'MELO3C031454.2' => 'cme', 'MELO3C031480.2' => 'cme', 'MELO3C031481.2' => 'cme', 'MELO3C031500.2' => 'cme', 'MELO3C031504.2' => 'cme', 'MELO3C031509.2' => 'cme', 'MELO3C031510.2' => 'cme', 'MELO3C031842.2' => 'cme', 'MELO3C031965.2' => 'cme', 'MELO3C031993.2' => 'cme', 'MELO3C032022.2' => 'cme', 'MELO3C032059.2' => 'cme', 'MELO3C032144.2' => 'cme', 'MELO3C032148.2' => 'cme', 'MELO3C032180.2' => 'cme', 'MELO3C032200.2' => 'cme', 'MELO3C032206.2' => 'cme', 'MELO3C032207.2' => 'cme', 'MELO3C032209.2' => 'cme', 'MELO3C032220.2' => 'cme', 'MELO3C032240.2' => 'cme', 'MELO3C032289.2' => 'cme', 'MELO3C032292.2' => 'cme', 'MELO3C032494.2' => 'cme', 'MELO3C032542.2' => 'cme', 'MELO3C032596.2' => 'cme', 'MELO3C032606.2' => 'cme', 'MELO3C032644.2' => 'cme', 'MELO3C032654.2' => 'cme', 'MELO3C032682.2' => 'cme', 'MELO3C032742.2' => 'cme', 'MELO3C032758.2' => 'cme', 'MELO3C032795.2' => 'cme', 'MELO3C032796.2' => 'cme', 'MELO3C032954.2' => 'cme', 'MELO3C032969.2' => 'cme', 'MELO3C033016.2' => 'cme', 'MELO3C033145.2' => 'cme', 'MELO3C033146.2' => 'cme', 'MELO3C033170.2' => 'cme', 'MELO3C033188.2' => 'cme', 'MELO3C033199.2' => 'cme', 'MELO3C033211.2' => 'cme', 'MELO3C033212.2' => 'cme', 'MELO3C033261.2' => 'cme', 'MELO3C033333.2' => 'cme', 'MELO3C033364.2' => 'cme', 'MELO3C033377.2' => 'cme', 'MELO3C033381.2' => 'cme', 'MELO3C033398.2' => 'cme', 'MELO3C033417.2' => 'cme', 'MELO3C033434.2' => 'cme', 'MELO3C033441.2' => 'cme', 'MELO3C033442.2' => 'cme', 'MELO3C033492.2' => 'cme', 'MELO3C033629.2' => 'cme', 'MELO3C033660.2' => 'cme', 'MELO3C033738.2' => 'cme', 'MELO3C033757.2' => 'cme', 'MELO3C033795.2' => 'cme', 'MELO3C033803.2' => 'cme', 'MELO3C033818.2' => 'cme', 'MELO3C033868.2' => 'cme', 'MELO3C033877.2' => 'cme', 'MELO3C033906.2' => 'cme', 'MELO3C033956.2' => 'cme', 'MELO3C034080.2' => 'cme', 'MELO3C034081.2' => 'cme', 'MELO3C034202.2' => 'cme', 'MELO3C034256.2' => 'cme', 'MELO3C034476.2' => 'cme', 'MELO3C034483.2' => 'cme', 'MELO3C034548.2' => 'cme', 'MELO3C034623.2' => 'cme', 'MELO3C034756.2' => 'cme', 'MELO3C034777.2' => 'cme', 'MELO3C034778.2' => 'cme', 'MELO3C034889.2' => 'cme', 'MELO3C034921.2' => 'cme', 'MELO3C034963.2' => 'cme', 'MELO3C034967.2' => 'cme', 'MELO3C035001.2' => 'cme', 'MELO3C035042.2' => 'cme', 'MELO3C035045.2' => 'cme', 'MELO3C035101.2' => 'cme', 'MELO3C035116.2' => 'cme', 'MELO3C035124.2' => 'cme', 'MELO3C035126.2' => 'cme', 'MELO3C035147.2' => 'cme', 'MELO3C035151.2' => 'cme', 'MELO3C035327.2' => 'cme', 'MELO3C035430.2' => 'cme', 'MELO3C035431.2' => 'cme', 'MELO3C035439.2' => 'cme', 'MELO3C035451.2' => 'cme', 'MELO3C035488.2' => 'cme', 'MELO3C035496.2' => 'cme', 'MELO3C035502.2' => 'cme', 'MELO3C035556.2' => 'cme', 'MELO3C035564.2' => 'cme', 'MELO3C035570.2' => 'cme', 'MELO3C035586.2' => 'cme', 'MELO3C035588.2' => 'cme', 'MELO3C035605.2' => 'cme', 'MELO3C035618.2' => 'cme', 'MELO3C035642.2' => 'cme', 'MELO3C035660.2' => 'cme', 'MELO3C035680.2' => 'cme', 'MELO3C035691.2' => 'cme', 'Nn1g01000' => 'nnu', 'Nn5g27284' => 'nnu', 'Psat3g065920' => 'psa', 'PSO832G2165' => 'pso', 'RcHm_v2.0_Chr7g0205671' => 'rch', 'Sed0003532' => 'sed', 'Sed0005282' => 'sed', 'Sed0005350' => 'sed', 'Sed0005563' => 'sed', 'Sed0005845' => 'sed', 'Sed0007091' => 'sed', 'Sed0007178' => 'sed', 'Sed0008442' => 'sed', 'Sed0011151' => 'sed', 'Sed0012349' => 'sed', 'Sed0015712' => 'sed', 'Sed0017352' => 'sed', 'Sed0017479' => 'sed', 'Sed0019314' => 'sed', 'Sed0021191' => 'sed', 'Sed0024321' => 'sed', 'Sed0026584' => 'sed', 'SHI25566' => 'shi', 'Thecc.05G132700' => 'tca', 'Thecc.08G138100' => 'tca', 'TPR.G13250' => 'tpr', 'TPR.G21616' => 'tpr', 'TWI18G0893' => 'twi', 'TWI53G1875' => 'twi', 'TWI63G1547' => 'twi' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001651', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001651' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '392', 'num_species' => '23' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001651' ) ), 'genes' => array( 'Ah.01g008150' => 'amhyb', 'arahy.Tifrunner.gnm1.ann1.06MZEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HEE39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0QZ25Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RQC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.497TK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4HXN36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5U3795' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ADW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B899F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGT6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6IU4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ0Q0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D661VL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2D6CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE068N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4V5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL4D0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INXA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP4QXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUU7A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5L10V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PCHE3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6JMF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYZ8NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q71493' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q82TWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5WE1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VKU54N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKDC23' => 'arhy', 'Atru.chr10.926' => 'acertr', 'Atru.chr12.953' => 'acertr', 'Atru.chr2.3198' => 'acertr', 'AUR62035422' => 'cqu', 'AUR62035709' => 'cqu', 'CANSAT35G1292' => 'cansat', 'CANSAT56G0820' => 'cansat', 'CANSAT64G1414' => 'cansat', 'CANSAT80G1436' => 'cansat', 'ClCG01G009750' => 'cla', 'ClCG05G014710' => 'cla', 'ClCG05G015880' => 'cla', 'ClCG08G001550' => 'cla', 'ClCG08G004530' => 'cla', 'ClCG09G011690' => 'cla', 'ClCG10G005540' => 'cla', 'ClCG10G008630' => 'cla', 'COL.COLO4_13231' => 'col', 'CsaV3_1G044430' => 'csa', 'CsaV3_1G045070' => 'csa', 'CsaV3_2G013960' => 'csa', 'CsaV3_3G000020' => 'csa', 'CsaV3_3G030680' => 'csa', 'CsaV3_4G027150' => 'csa', 'CsaV3_5G023560' => 'csa', 'CsaV3_5G024100' => 'csa', 'CsaV3_6G009900' => 'csa', 'DCAR_009785' => 'dca', 'DCAR_011368' => 'dca', 'DCAR_011369' => 'dca', 'DCAR_015799' => 'dca', 'DCAR_018898' => 'dca', 'EL10Ac9g21844' => 'bvu', 'FAN02G0208' => 'fan', 'FAN02G1352' => 'fan', 'Hma1.2p1_0035F.1_g022120' => 'hma', 'Manes.03G068716' => 'mes', 'MELO3C002765.2' => 'cme', 'MELO3C002895.2' => 'cme', 'MELO3C002985.2' => 'cme', 'MELO3C003790.2' => 'cme', 'MELO3C003865.2' => 'cme', 'MELO3C003883.2' => 'cme', 'MELO3C004014.2' => 'cme', 'MELO3C004976.2' => 'cme', 'MELO3C004979.2' => 'cme', 'MELO3C005010.2' => 'cme', 'MELO3C005087.2' => 'cme', 'MELO3C005110.2' => 'cme', 'MELO3C005115.2' => 'cme', 'MELO3C005119.2' => 'cme', 'MELO3C005280.2' => 'cme', 'MELO3C008122.2' => 'cme', 'MELO3C008205.2' => 'cme', 'MELO3C008276.2' => 'cme', 'MELO3C008463.2' => 'cme', 'MELO3C008748.2' => 'cme', 'MELO3C008755.2' => 'cme', 'MELO3C008868.2' => 'cme', 'MELO3C008893.2' => 'cme', 'MELO3C008915.2' => 'cme', 'MELO3C008989.2' => 'cme', 'MELO3C009040.2' => 'cme', 'MELO3C010138.2' => 'cme', 'MELO3C010406.2' => 'cme', 'MELO3C010513.2' => 'cme', 'MELO3C010531.2' => 'cme', 'MELO3C010541.2' => 'cme', 'MELO3C010558.2' => 'cme', 'MELO3C010562.2' => 'cme', 'MELO3C010596.2' => 'cme', 'MELO3C011581.2' => 'cme', 'MELO3C011642.2' => 'cme', 'MELO3C012637.2' => 'cme', 'MELO3C012830.2' => 'cme', 'MELO3C012907.2' => 'cme', 'MELO3C012981.2' => 'cme', 'MELO3C013062.2' => 'cme', 'MELO3C013106.2' => 'cme', 'MELO3C013166.2' => 'cme', 'MELO3C013181.2' => 'cme', 'MELO3C013412.2' => 'cme', 'MELO3C013643.2' => 'cme', 'MELO3C013978.2' => 'cme', 'MELO3C014135.2' => 'cme', 'MELO3C014887.2' => 'cme', 'MELO3C014919.2' => 'cme', 'MELO3C015092.2' => 'cme', 'MELO3C016228.2' => 'cme', 'MELO3C016240.2' => 'cme', 'MELO3C016461.2' => 'cme', 'MELO3C016511.2' => 'cme', 'MELO3C016611.2' => 'cme', 'MELO3C017335.2' => 'cme', 'MELO3C017494.2' => 'cme', 'MELO3C018204.2' => 'cme', 'MELO3C018304.2' => 'cme', 'MELO3C019025.2' => 'cme', 'MELO3C019042.2' => 'cme', 'MELO3C019084.2' => 'cme', 'MELO3C019088.2' => 'cme', 'MELO3C019268.2' => 'cme', 'MELO3C019393.2' => 'cme', 'MELO3C019530.2' => 'cme', 'MELO3C020019.2' => 'cme', 'MELO3C020165.2' => 'cme', 'MELO3C020454.2' => 'cme', 'MELO3C020647.2' => 'cme', 'MELO3C020687.2' => 'cme', 'MELO3C021049.2' => 'cme', 'MELO3C021105.2' => 'cme', 'MELO3C021833.2' => 'cme', 'MELO3C022191.2' => 'cme', 'MELO3C022645.2' => 'cme', 'MELO3C022940.2' => 'cme', 'MELO3C023000.2' => 'cme', 'MELO3C023118.2' => 'cme', 'MELO3C023134.2' => 'cme', 'MELO3C023670.2' => 'cme', 'MELO3C024650.2' => 'cme', 'MELO3C024801.2' => 'cme', 'MELO3C024802.2' => 'cme', 'MELO3C024858.2' => 'cme', 'MELO3C024931.2' => 'cme', 'MELO3C025001.2' => 'cme', 'MELO3C025329.2' => 'cme', 'MELO3C025382.2' => 'cme', 'MELO3C025455.2' => 'cme', 'MELO3C025792.2' => 'cme', 'MELO3C025979.2' => 'cme', 'MELO3C026040.2' => 'cme', 'MELO3C026069.2' => 'cme', 'MELO3C026091.2' => 'cme', 'MELO3C026719.2' => 'cme', 'MELO3C027071.2' => 'cme', 'MELO3C027449.2' => 'cme', 'MELO3C027530.2' => 'cme', 'MELO3C027591.2' => 'cme', 'MELO3C027597.2' => 'cme', 'MELO3C027706.2' => 'cme', 'MELO3C027743.2' => 'cme', 'MELO3C027758.2' => 'cme', 'MELO3C027794.2' => 'cme', 'MELO3C028011.2' => 'cme', 'MELO3C028082.2' => 'cme', 'MELO3C028097.2' => 'cme', 'MELO3C028136.2' => 'cme', 'MELO3C028411.2' => 'cme', 'MELO3C028435.2' => 'cme', 'MELO3C028437.2' => 'cme', 'MELO3C028443.2' => 'cme', 'MELO3C028451.2' => 'cme', 'MELO3C028455.2' => 'cme', 'MELO3C028467.2' => 'cme', 'MELO3C028477.2' => 'cme', 'MELO3C028479.2' => 'cme', 'MELO3C028481.2' => 'cme', 'MELO3C028533.2' => 'cme', 'MELO3C028659.2' => 'cme', 'MELO3C028665.2' => 'cme', 'MELO3C028669.2' => 'cme', 'MELO3C028911.2' => 'cme', 'MELO3C028964.2' => 'cme', 'MELO3C028975.2' => 'cme', 'MELO3C029013.2' => 'cme', 'MELO3C029065.2' => 'cme', 'MELO3C029074.2' => 'cme', 'MELO3C029091.2' => 'cme', 'MELO3C029104.2' => 'cme', 'MELO3C029115.2' => 'cme', 'MELO3C029116.2' => 'cme', 'MELO3C029156.2' => 'cme', 'MELO3C029207.2' => 'cme', 'MELO3C029219.2' => 'cme', 'MELO3C029416.2' => 'cme', 'MELO3C029428.2' => 'cme', 'MELO3C029611.2' => 'cme', 'MELO3C029623.2' => 'cme', 'MELO3C029625.2' => 'cme', 'MELO3C029646.2' => 'cme', 'MELO3C029657.2' => 'cme', 'MELO3C029671.2' => 'cme', 'MELO3C029732.2' => 'cme', 'MELO3C029815.2' => 'cme', 'MELO3C029855.2' => 'cme', 'MELO3C029869.2' => 'cme', 'MELO3C029897.2' => 'cme', 'MELO3C029917.2' => 'cme', 'MELO3C029951.2' => 'cme', 'MELO3C029974.2' => 'cme', 'MELO3C030054.2' => 'cme', 'MELO3C030087.2' => 'cme', 'MELO3C030092.2' => 'cme', 'MELO3C030093.2' => 'cme', 'MELO3C030121.2' => 'cme', 'MELO3C030130.2' => 'cme', 'MELO3C030177.2' => 'cme', 'MELO3C030189.2' => 'cme', 'MELO3C030196.2' => 'cme', 'MELO3C030223.2' => 'cme', 'MELO3C030245.2' => 'cme', 'MELO3C030295.2' => 'cme', 'MELO3C030296.2' => 'cme', 'MELO3C030525.2' => 'cme', 'MELO3C030547.2' => 'cme', 'MELO3C030555.2' => 'cme', 'MELO3C030689.2' => 'cme', 'MELO3C030691.2' => 'cme', 'MELO3C030792.2' => 'cme', 'MELO3C030820.2' => 'cme', 'MELO3C030843.2' => 'cme', 'MELO3C030846.2' => 'cme', 'MELO3C030848.2' => 'cme', 'MELO3C030906.2' => 'cme', 'MELO3C030921.2' => 'cme', 'MELO3C030942.2' => 'cme', 'MELO3C030947.2' => 'cme', 'MELO3C031064.2' => 'cme', 'MELO3C031238.2' => 'cme', 'MELO3C031251.2' => 'cme', 'MELO3C031381.2' => 'cme', 'MELO3C031433.2' => 'cme', 'MELO3C031453.2' => 'cme', 'MELO3C031454.2' => 'cme', 'MELO3C031480.2' => 'cme', 'MELO3C031481.2' => 'cme', 'MELO3C031500.2' => 'cme', 'MELO3C031504.2' => 'cme', 'MELO3C031509.2' => 'cme', 'MELO3C031510.2' => 'cme', 'MELO3C031842.2' => 'cme', 'MELO3C031965.2' => 'cme', 'MELO3C031993.2' => 'cme', 'MELO3C032022.2' => 'cme', 'MELO3C032059.2' => 'cme', 'MELO3C032144.2' => 'cme', 'MELO3C032148.2' => 'cme', 'MELO3C032180.2' => 'cme', 'MELO3C032200.2' => 'cme', 'MELO3C032206.2' => 'cme', 'MELO3C032207.2' => 'cme', 'MELO3C032209.2' => 'cme', 'MELO3C032220.2' => 'cme', 'MELO3C032240.2' => 'cme', 'MELO3C032289.2' => 'cme', 'MELO3C032292.2' => 'cme', 'MELO3C032494.2' => 'cme', 'MELO3C032542.2' => 'cme', 'MELO3C032596.2' => 'cme', 'MELO3C032606.2' => 'cme', 'MELO3C032644.2' => 'cme', 'MELO3C032654.2' => 'cme', 'MELO3C032682.2' => 'cme', 'MELO3C032742.2' => 'cme', 'MELO3C032758.2' => 'cme', 'MELO3C032795.2' => 'cme', 'MELO3C032796.2' => 'cme', 'MELO3C032954.2' => 'cme', 'MELO3C032969.2' => 'cme', 'MELO3C033016.2' => 'cme', 'MELO3C033145.2' => 'cme', 'MELO3C033146.2' => 'cme', 'MELO3C033170.2' => 'cme', 'MELO3C033188.2' => 'cme', 'MELO3C033199.2' => 'cme', 'MELO3C033211.2' => 'cme', 'MELO3C033212.2' => 'cme', 'MELO3C033261.2' => 'cme', 'MELO3C033333.2' => 'cme', 'MELO3C033364.2' => 'cme', 'MELO3C033377.2' => 'cme', 'MELO3C033381.2' => 'cme', 'MELO3C033398.2' => 'cme', 'MELO3C033417.2' => 'cme', 'MELO3C033434.2' => 'cme', 'MELO3C033441.2' => 'cme', 'MELO3C033442.2' => 'cme', 'MELO3C033492.2' => 'cme', 'MELO3C033629.2' => 'cme', 'MELO3C033660.2' => 'cme', 'MELO3C033738.2' => 'cme', 'MELO3C033757.2' => 'cme', 'MELO3C033795.2' => 'cme', 'MELO3C033803.2' => 'cme', 'MELO3C033818.2' => 'cme', 'MELO3C033868.2' => 'cme', 'MELO3C033877.2' => 'cme', 'MELO3C033906.2' => 'cme', 'MELO3C033956.2' => 'cme', 'MELO3C034080.2' => 'cme', 'MELO3C034081.2' => 'cme', 'MELO3C034202.2' => 'cme', 'MELO3C034256.2' => 'cme', 'MELO3C034476.2' => 'cme', 'MELO3C034483.2' => 'cme', 'MELO3C034548.2' => 'cme', 'MELO3C034623.2' => 'cme', 'MELO3C034756.2' => 'cme', 'MELO3C034777.2' => 'cme', 'MELO3C034778.2' => 'cme', 'MELO3C034889.2' => 'cme', 'MELO3C034921.2' => 'cme', 'MELO3C034963.2' => 'cme', 'MELO3C034967.2' => 'cme', 'MELO3C035001.2' => 'cme', 'MELO3C035042.2' => 'cme', 'MELO3C035045.2' => 'cme', 'MELO3C035101.2' => 'cme', 'MELO3C035116.2' => 'cme', 'MELO3C035124.2' => 'cme', 'MELO3C035126.2' => 'cme', 'MELO3C035147.2' => 'cme', 'MELO3C035151.2' => 'cme', 'MELO3C035327.2' => 'cme', 'MELO3C035430.2' => 'cme', 'MELO3C035431.2' => 'cme', 'MELO3C035439.2' => 'cme', 'MELO3C035451.2' => 'cme', 'MELO3C035488.2' => 'cme', 'MELO3C035496.2' => 'cme', 'MELO3C035502.2' => 'cme', 'MELO3C035556.2' => 'cme', 'MELO3C035564.2' => 'cme', 'MELO3C035570.2' => 'cme', 'MELO3C035586.2' => 'cme', 'MELO3C035588.2' => 'cme', 'MELO3C035605.2' => 'cme', 'MELO3C035618.2' => 'cme', 'MELO3C035642.2' => 'cme', 'MELO3C035660.2' => 'cme', 'MELO3C035680.2' => 'cme', 'MELO3C035691.2' => 'cme', 'Nn1g01000' => 'nnu', 'Nn5g27284' => 'nnu', 'Psat3g065920' => 'psa', 'PSO832G2165' => 'pso', 'RcHm_v2.0_Chr7g0205671' => 'rch', 'Sed0003532' => 'sed', 'Sed0005282' => 'sed', 'Sed0005350' => 'sed', 'Sed0005563' => 'sed', 'Sed0005845' => 'sed', 'Sed0007091' => 'sed', 'Sed0007178' => 'sed', 'Sed0008442' => 'sed', 'Sed0011151' => 'sed', 'Sed0012349' => 'sed', 'Sed0015712' => 'sed', 'Sed0017352' => 'sed', 'Sed0017479' => 'sed', 'Sed0019314' => 'sed', 'Sed0021191' => 'sed', 'Sed0024321' => 'sed', 'Sed0026584' => 'sed', 'SHI25566' => 'shi', 'Thecc.05G132700' => 'tca', 'Thecc.08G138100' => 'tca', 'TPR.G13250' => 'tpr', 'TPR.G21616' => 'tpr', 'TWI18G0893' => 'twi', 'TWI53G1875' => 'twi', 'TWI63G1547' => 'twi' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001651' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001651' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001651' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001651' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '392', 'num_species' => '23' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'Ah.01g008150' => 'amhyb', 'arahy.Tifrunner.gnm1.ann1.06MZEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HEE39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0QZ25Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RQC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.497TK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4HXN36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5U3795' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ADW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B899F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGT6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6IU4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ0Q0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D661VL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2D6CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE068N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4V5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL4D0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INXA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP4QXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUU7A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5L10V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PCHE3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6JMF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYZ8NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q71493' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q82TWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5WE1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VKU54N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKDC23' => 'arhy', 'Atru.chr10.926' => 'acertr', 'Atru.chr12.953' => 'acertr', 'Atru.chr2.3198' => 'acertr', 'AUR62035422' => 'cqu', 'AUR62035709' => 'cqu', 'CANSAT35G1292' => 'cansat', 'CANSAT56G0820' => 'cansat', 'CANSAT64G1414' => 'cansat', 'CANSAT80G1436' => 'cansat', 'ClCG01G009750' => 'cla', 'ClCG05G014710' => 'cla', 'ClCG05G015880' => 'cla', 'ClCG08G001550' => 'cla', 'ClCG08G004530' => 'cla', 'ClCG09G011690' => 'cla', 'ClCG10G005540' => 'cla', 'ClCG10G008630' => 'cla', 'COL.COLO4_13231' => 'col', 'CsaV3_1G044430' => 'csa', 'CsaV3_1G045070' => 'csa', 'CsaV3_2G013960' => 'csa', 'CsaV3_3G000020' => 'csa', 'CsaV3_3G030680' => 'csa', 'CsaV3_4G027150' => 'csa', 'CsaV3_5G023560' => 'csa', 'CsaV3_5G024100' => 'csa', 'CsaV3_6G009900' => 'csa', 'DCAR_009785' => 'dca', 'DCAR_011368' => 'dca', 'DCAR_011369' => 'dca', 'DCAR_015799' => 'dca', 'DCAR_018898' => 'dca', 'EL10Ac9g21844' => 'bvu', 'FAN02G0208' => 'fan', 'FAN02G1352' => 'fan', 'Hma1.2p1_0035F.1_g022120' => 'hma', 'Manes.03G068716' => 'mes', 'MELO3C002765.2' => 'cme', 'MELO3C002895.2' => 'cme', 'MELO3C002985.2' => 'cme', 'MELO3C003790.2' => 'cme', 'MELO3C003865.2' => 'cme', 'MELO3C003883.2' => 'cme', 'MELO3C004014.2' => 'cme', 'MELO3C004976.2' => 'cme', 'MELO3C004979.2' => 'cme', 'MELO3C005010.2' => 'cme', 'MELO3C005087.2' => 'cme', 'MELO3C005110.2' => 'cme', 'MELO3C005115.2' => 'cme', 'MELO3C005119.2' => 'cme', 'MELO3C005280.2' => 'cme', 'MELO3C008122.2' => 'cme', 'MELO3C008205.2' => 'cme', 'MELO3C008276.2' => 'cme', 'MELO3C008463.2' => 'cme', 'MELO3C008748.2' => 'cme', 'MELO3C008755.2' => 'cme', 'MELO3C008868.2' => 'cme', 'MELO3C008893.2' => 'cme', 'MELO3C008915.2' => 'cme', 'MELO3C008989.2' => 'cme', 'MELO3C009040.2' => 'cme', 'MELO3C010138.2' => 'cme', 'MELO3C010406.2' => 'cme', 'MELO3C010513.2' => 'cme', 'MELO3C010531.2' => 'cme', 'MELO3C010541.2' => 'cme', 'MELO3C010558.2' => 'cme', 'MELO3C010562.2' => 'cme', 'MELO3C010596.2' => 'cme', 'MELO3C011581.2' => 'cme', 'MELO3C011642.2' => 'cme', 'MELO3C012637.2' => 'cme', 'MELO3C012830.2' => 'cme', 'MELO3C012907.2' => 'cme', 'MELO3C012981.2' => 'cme', 'MELO3C013062.2' => 'cme', 'MELO3C013106.2' => 'cme', 'MELO3C013166.2' => 'cme', 'MELO3C013181.2' => 'cme', 'MELO3C013412.2' => 'cme', 'MELO3C013643.2' => 'cme', 'MELO3C013978.2' => 'cme', 'MELO3C014135.2' => 'cme', 'MELO3C014887.2' => 'cme', 'MELO3C014919.2' => 'cme', 'MELO3C015092.2' => 'cme', 'MELO3C016228.2' => 'cme', 'MELO3C016240.2' => 'cme', 'MELO3C016461.2' => 'cme', 'MELO3C016511.2' => 'cme', 'MELO3C016611.2' => 'cme', 'MELO3C017335.2' => 'cme', 'MELO3C017494.2' => 'cme', 'MELO3C018204.2' => 'cme', 'MELO3C018304.2' => 'cme', 'MELO3C019025.2' => 'cme', 'MELO3C019042.2' => 'cme', 'MELO3C019084.2' => 'cme', 'MELO3C019088.2' => 'cme', 'MELO3C019268.2' => 'cme', 'MELO3C019393.2' => 'cme', 'MELO3C019530.2' => 'cme', 'MELO3C020019.2' => 'cme', 'MELO3C020165.2' => 'cme', 'MELO3C020454.2' => 'cme', 'MELO3C020647.2' => 'cme', 'MELO3C020687.2' => 'cme', 'MELO3C021049.2' => 'cme', 'MELO3C021105.2' => 'cme', 'MELO3C021833.2' => 'cme', 'MELO3C022191.2' => 'cme', 'MELO3C022645.2' => 'cme', 'MELO3C022940.2' => 'cme', 'MELO3C023000.2' => 'cme', 'MELO3C023118.2' => 'cme', 'MELO3C023134.2' => 'cme', 'MELO3C023670.2' => 'cme', 'MELO3C024650.2' => 'cme', 'MELO3C024801.2' => 'cme', 'MELO3C024802.2' => 'cme', 'MELO3C024858.2' => 'cme', 'MELO3C024931.2' => 'cme', 'MELO3C025001.2' => 'cme', 'MELO3C025329.2' => 'cme', 'MELO3C025382.2' => 'cme', 'MELO3C025455.2' => 'cme', 'MELO3C025792.2' => 'cme', 'MELO3C025979.2' => 'cme', 'MELO3C026040.2' => 'cme', 'MELO3C026069.2' => 'cme', 'MELO3C026091.2' => 'cme', 'MELO3C026719.2' => 'cme', 'MELO3C027071.2' => 'cme', 'MELO3C027449.2' => 'cme', 'MELO3C027530.2' => 'cme', 'MELO3C027591.2' => 'cme', 'MELO3C027597.2' => 'cme', 'MELO3C027706.2' => 'cme', 'MELO3C027743.2' => 'cme', 'MELO3C027758.2' => 'cme', 'MELO3C027794.2' => 'cme', 'MELO3C028011.2' => 'cme', 'MELO3C028082.2' => 'cme', 'MELO3C028097.2' => 'cme', 'MELO3C028136.2' => 'cme', 'MELO3C028411.2' => 'cme', 'MELO3C028435.2' => 'cme', 'MELO3C028437.2' => 'cme', 'MELO3C028443.2' => 'cme', 'MELO3C028451.2' => 'cme', 'MELO3C028455.2' => 'cme', 'MELO3C028467.2' => 'cme', 'MELO3C028477.2' => 'cme', 'MELO3C028479.2' => 'cme', 'MELO3C028481.2' => 'cme', 'MELO3C028533.2' => 'cme', 'MELO3C028659.2' => 'cme', 'MELO3C028665.2' => 'cme', 'MELO3C028669.2' => 'cme', 'MELO3C028911.2' => 'cme', 'MELO3C028964.2' => 'cme', 'MELO3C028975.2' => 'cme', 'MELO3C029013.2' => 'cme', 'MELO3C029065.2' => 'cme', 'MELO3C029074.2' => 'cme', 'MELO3C029091.2' => 'cme', 'MELO3C029104.2' => 'cme', 'MELO3C029115.2' => 'cme', 'MELO3C029116.2' => 'cme', 'MELO3C029156.2' => 'cme', 'MELO3C029207.2' => 'cme', 'MELO3C029219.2' => 'cme', 'MELO3C029416.2' => 'cme', 'MELO3C029428.2' => 'cme', 'MELO3C029611.2' => 'cme', 'MELO3C029623.2' => 'cme', 'MELO3C029625.2' => 'cme', 'MELO3C029646.2' => 'cme', 'MELO3C029657.2' => 'cme', 'MELO3C029671.2' => 'cme', 'MELO3C029732.2' => 'cme', 'MELO3C029815.2' => 'cme', 'MELO3C029855.2' => 'cme', 'MELO3C029869.2' => 'cme', 'MELO3C029897.2' => 'cme', 'MELO3C029917.2' => 'cme', 'MELO3C029951.2' => 'cme', 'MELO3C029974.2' => 'cme', 'MELO3C030054.2' => 'cme', 'MELO3C030087.2' => 'cme', 'MELO3C030092.2' => 'cme', 'MELO3C030093.2' => 'cme', 'MELO3C030121.2' => 'cme', 'MELO3C030130.2' => 'cme', 'MELO3C030177.2' => 'cme', 'MELO3C030189.2' => 'cme', 'MELO3C030196.2' => 'cme', 'MELO3C030223.2' => 'cme', 'MELO3C030245.2' => 'cme', 'MELO3C030295.2' => 'cme', 'MELO3C030296.2' => 'cme', 'MELO3C030525.2' => 'cme', 'MELO3C030547.2' => 'cme', 'MELO3C030555.2' => 'cme', 'MELO3C030689.2' => 'cme', 'MELO3C030691.2' => 'cme', 'MELO3C030792.2' => 'cme', 'MELO3C030820.2' => 'cme', 'MELO3C030843.2' => 'cme', 'MELO3C030846.2' => 'cme', 'MELO3C030848.2' => 'cme', 'MELO3C030906.2' => 'cme', 'MELO3C030921.2' => 'cme', 'MELO3C030942.2' => 'cme', 'MELO3C030947.2' => 'cme', 'MELO3C031064.2' => 'cme', 'MELO3C031238.2' => 'cme', 'MELO3C031251.2' => 'cme', 'MELO3C031381.2' => 'cme', 'MELO3C031433.2' => 'cme', 'MELO3C031453.2' => 'cme', 'MELO3C031454.2' => 'cme', 'MELO3C031480.2' => 'cme', 'MELO3C031481.2' => 'cme', 'MELO3C031500.2' => 'cme', 'MELO3C031504.2' => 'cme', 'MELO3C031509.2' => 'cme', 'MELO3C031510.2' => 'cme', 'MELO3C031842.2' => 'cme', 'MELO3C031965.2' => 'cme', 'MELO3C031993.2' => 'cme', 'MELO3C032022.2' => 'cme', 'MELO3C032059.2' => 'cme', 'MELO3C032144.2' => 'cme', 'MELO3C032148.2' => 'cme', 'MELO3C032180.2' => 'cme', 'MELO3C032200.2' => 'cme', 'MELO3C032206.2' => 'cme', 'MELO3C032207.2' => 'cme', 'MELO3C032209.2' => 'cme', 'MELO3C032220.2' => 'cme', 'MELO3C032240.2' => 'cme', 'MELO3C032289.2' => 'cme', 'MELO3C032292.2' => 'cme', 'MELO3C032494.2' => 'cme', 'MELO3C032542.2' => 'cme', 'MELO3C032596.2' => 'cme', 'MELO3C032606.2' => 'cme', 'MELO3C032644.2' => 'cme', 'MELO3C032654.2' => 'cme', 'MELO3C032682.2' => 'cme', 'MELO3C032742.2' => 'cme', 'MELO3C032758.2' => 'cme', 'MELO3C032795.2' => 'cme', 'MELO3C032796.2' => 'cme', 'MELO3C032954.2' => 'cme', 'MELO3C032969.2' => 'cme', 'MELO3C033016.2' => 'cme', 'MELO3C033145.2' => 'cme', 'MELO3C033146.2' => 'cme', 'MELO3C033170.2' => 'cme', 'MELO3C033188.2' => 'cme', 'MELO3C033199.2' => 'cme', 'MELO3C033211.2' => 'cme', 'MELO3C033212.2' => 'cme', 'MELO3C033261.2' => 'cme', 'MELO3C033333.2' => 'cme', 'MELO3C033364.2' => 'cme', 'MELO3C033377.2' => 'cme', 'MELO3C033381.2' => 'cme', 'MELO3C033398.2' => 'cme', 'MELO3C033417.2' => 'cme', 'MELO3C033434.2' => 'cme', 'MELO3C033441.2' => 'cme', 'MELO3C033442.2' => 'cme', 'MELO3C033492.2' => 'cme', 'MELO3C033629.2' => 'cme', 'MELO3C033660.2' => 'cme', 'MELO3C033738.2' => 'cme', 'MELO3C033757.2' => 'cme', 'MELO3C033795.2' => 'cme', 'MELO3C033803.2' => 'cme', 'MELO3C033818.2' => 'cme', 'MELO3C033868.2' => 'cme', 'MELO3C033877.2' => 'cme', 'MELO3C033906.2' => 'cme', 'MELO3C033956.2' => 'cme', 'MELO3C034080.2' => 'cme', 'MELO3C034081.2' => 'cme', 'MELO3C034202.2' => 'cme', 'MELO3C034256.2' => 'cme', 'MELO3C034476.2' => 'cme', 'MELO3C034483.2' => 'cme', 'MELO3C034548.2' => 'cme', 'MELO3C034623.2' => 'cme', 'MELO3C034756.2' => 'cme', 'MELO3C034777.2' => 'cme', 'MELO3C034778.2' => 'cme', 'MELO3C034889.2' => 'cme', 'MELO3C034921.2' => 'cme', 'MELO3C034963.2' => 'cme', 'MELO3C034967.2' => 'cme', 'MELO3C035001.2' => 'cme', 'MELO3C035042.2' => 'cme', 'MELO3C035045.2' => 'cme', 'MELO3C035101.2' => 'cme', 'MELO3C035116.2' => 'cme', 'MELO3C035124.2' => 'cme', 'MELO3C035126.2' => 'cme', 'MELO3C035147.2' => 'cme', 'MELO3C035151.2' => 'cme', 'MELO3C035327.2' => 'cme', 'MELO3C035430.2' => 'cme', 'MELO3C035431.2' => 'cme', 'MELO3C035439.2' => 'cme', 'MELO3C035451.2' => 'cme', 'MELO3C035488.2' => 'cme', 'MELO3C035496.2' => 'cme', 'MELO3C035502.2' => 'cme', 'MELO3C035556.2' => 'cme', 'MELO3C035564.2' => 'cme', 'MELO3C035570.2' => 'cme', 'MELO3C035586.2' => 'cme', 'MELO3C035588.2' => 'cme', 'MELO3C035605.2' => 'cme', 'MELO3C035618.2' => 'cme', 'MELO3C035642.2' => 'cme', 'MELO3C035660.2' => 'cme', 'MELO3C035680.2' => 'cme', 'MELO3C035691.2' => 'cme', 'Nn1g01000' => 'nnu', 'Nn5g27284' => 'nnu', 'Psat3g065920' => 'psa', 'PSO832G2165' => 'pso', 'RcHm_v2.0_Chr7g0205671' => 'rch', 'Sed0003532' => 'sed', 'Sed0005282' => 'sed', 'Sed0005350' => 'sed', 'Sed0005563' => 'sed', 'Sed0005845' => 'sed', 'Sed0007091' => 'sed', 'Sed0007178' => 'sed', 'Sed0008442' => 'sed', 'Sed0011151' => 'sed', 'Sed0012349' => 'sed', 'Sed0015712' => 'sed', 'Sed0017352' => 'sed', 'Sed0017479' => 'sed', 'Sed0019314' => 'sed', 'Sed0021191' => 'sed', 'Sed0024321' => 'sed', 'Sed0026584' => 'sed', 'SHI25566' => 'shi', 'Thecc.05G132700' => 'tca', 'Thecc.08G138100' => 'tca', 'TPR.G13250' => 'tpr', 'TPR.G21616' => 'tpr', 'TWI18G0893' => 'twi', 'TWI53G1875' => 'twi', 'TWI63G1547' => 'twi' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001651', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001651' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '392', 'num_species' => '23' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001651' ) ), 'genes' => array( 'Ah.01g008150' => 'amhyb', 'arahy.Tifrunner.gnm1.ann1.06MZEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HEE39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0QZ25Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RQC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.497TK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4HXN36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5U3795' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ADW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B899F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGT6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6IU4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ0Q0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D661VL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2D6CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE068N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4V5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL4D0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INXA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP4QXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUU7A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5L10V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PCHE3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6JMF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYZ8NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q71493' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q82TWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5WE1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VKU54N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKDC23' => 'arhy', 'Atru.chr10.926' => 'acertr', 'Atru.chr12.953' => 'acertr', 'Atru.chr2.3198' => 'acertr', 'AUR62035422' => 'cqu', 'AUR62035709' => 'cqu', 'CANSAT35G1292' => 'cansat', 'CANSAT56G0820' => 'cansat', 'CANSAT64G1414' => 'cansat', 'CANSAT80G1436' => 'cansat', 'ClCG01G009750' => 'cla', 'ClCG05G014710' => 'cla', 'ClCG05G015880' => 'cla', 'ClCG08G001550' => 'cla', 'ClCG08G004530' => 'cla', 'ClCG09G011690' => 'cla', 'ClCG10G005540' => 'cla', 'ClCG10G008630' => 'cla', 'COL.COLO4_13231' => 'col', 'CsaV3_1G044430' => 'csa', 'CsaV3_1G045070' => 'csa', 'CsaV3_2G013960' => 'csa', 'CsaV3_3G000020' => 'csa', 'CsaV3_3G030680' => 'csa', 'CsaV3_4G027150' => 'csa', 'CsaV3_5G023560' => 'csa', 'CsaV3_5G024100' => 'csa', 'CsaV3_6G009900' => 'csa', 'DCAR_009785' => 'dca', 'DCAR_011368' => 'dca', 'DCAR_011369' => 'dca', 'DCAR_015799' => 'dca', 'DCAR_018898' => 'dca', 'EL10Ac9g21844' => 'bvu', 'FAN02G0208' => 'fan', 'FAN02G1352' => 'fan', 'Hma1.2p1_0035F.1_g022120' => 'hma', 'Manes.03G068716' => 'mes', 'MELO3C002765.2' => 'cme', 'MELO3C002895.2' => 'cme', 'MELO3C002985.2' => 'cme', 'MELO3C003790.2' => 'cme', 'MELO3C003865.2' => 'cme', 'MELO3C003883.2' => 'cme', 'MELO3C004014.2' => 'cme', 'MELO3C004976.2' => 'cme', 'MELO3C004979.2' => 'cme', 'MELO3C005010.2' => 'cme', 'MELO3C005087.2' => 'cme', 'MELO3C005110.2' => 'cme', 'MELO3C005115.2' => 'cme', 'MELO3C005119.2' => 'cme', 'MELO3C005280.2' => 'cme', 'MELO3C008122.2' => 'cme', 'MELO3C008205.2' => 'cme', 'MELO3C008276.2' => 'cme', 'MELO3C008463.2' => 'cme', 'MELO3C008748.2' => 'cme', 'MELO3C008755.2' => 'cme', 'MELO3C008868.2' => 'cme', 'MELO3C008893.2' => 'cme', 'MELO3C008915.2' => 'cme', 'MELO3C008989.2' => 'cme', 'MELO3C009040.2' => 'cme', 'MELO3C010138.2' => 'cme', 'MELO3C010406.2' => 'cme', 'MELO3C010513.2' => 'cme', 'MELO3C010531.2' => 'cme', 'MELO3C010541.2' => 'cme', 'MELO3C010558.2' => 'cme', 'MELO3C010562.2' => 'cme', 'MELO3C010596.2' => 'cme', 'MELO3C011581.2' => 'cme', 'MELO3C011642.2' => 'cme', 'MELO3C012637.2' => 'cme', 'MELO3C012830.2' => 'cme', 'MELO3C012907.2' => 'cme', 'MELO3C012981.2' => 'cme', 'MELO3C013062.2' => 'cme', 'MELO3C013106.2' => 'cme', 'MELO3C013166.2' => 'cme', 'MELO3C013181.2' => 'cme', 'MELO3C013412.2' => 'cme', 'MELO3C013643.2' => 'cme', 'MELO3C013978.2' => 'cme', 'MELO3C014135.2' => 'cme', 'MELO3C014887.2' => 'cme', 'MELO3C014919.2' => 'cme', 'MELO3C015092.2' => 'cme', 'MELO3C016228.2' => 'cme', 'MELO3C016240.2' => 'cme', 'MELO3C016461.2' => 'cme', 'MELO3C016511.2' => 'cme', 'MELO3C016611.2' => 'cme', 'MELO3C017335.2' => 'cme', 'MELO3C017494.2' => 'cme', 'MELO3C018204.2' => 'cme', 'MELO3C018304.2' => 'cme', 'MELO3C019025.2' => 'cme', 'MELO3C019042.2' => 'cme', 'MELO3C019084.2' => 'cme', 'MELO3C019088.2' => 'cme', 'MELO3C019268.2' => 'cme', 'MELO3C019393.2' => 'cme', 'MELO3C019530.2' => 'cme', 'MELO3C020019.2' => 'cme', 'MELO3C020165.2' => 'cme', 'MELO3C020454.2' => 'cme', 'MELO3C020647.2' => 'cme', 'MELO3C020687.2' => 'cme', 'MELO3C021049.2' => 'cme', 'MELO3C021105.2' => 'cme', 'MELO3C021833.2' => 'cme', 'MELO3C022191.2' => 'cme', 'MELO3C022645.2' => 'cme', 'MELO3C022940.2' => 'cme', 'MELO3C023000.2' => 'cme', 'MELO3C023118.2' => 'cme', 'MELO3C023134.2' => 'cme', 'MELO3C023670.2' => 'cme', 'MELO3C024650.2' => 'cme', 'MELO3C024801.2' => 'cme', 'MELO3C024802.2' => 'cme', 'MELO3C024858.2' => 'cme', 'MELO3C024931.2' => 'cme', 'MELO3C025001.2' => 'cme', 'MELO3C025329.2' => 'cme', 'MELO3C025382.2' => 'cme', 'MELO3C025455.2' => 'cme', 'MELO3C025792.2' => 'cme', 'MELO3C025979.2' => 'cme', 'MELO3C026040.2' => 'cme', 'MELO3C026069.2' => 'cme', 'MELO3C026091.2' => 'cme', 'MELO3C026719.2' => 'cme', 'MELO3C027071.2' => 'cme', 'MELO3C027449.2' => 'cme', 'MELO3C027530.2' => 'cme', 'MELO3C027591.2' => 'cme', 'MELO3C027597.2' => 'cme', 'MELO3C027706.2' => 'cme', 'MELO3C027743.2' => 'cme', 'MELO3C027758.2' => 'cme', 'MELO3C027794.2' => 'cme', 'MELO3C028011.2' => 'cme', 'MELO3C028082.2' => 'cme', 'MELO3C028097.2' => 'cme', 'MELO3C028136.2' => 'cme', 'MELO3C028411.2' => 'cme', 'MELO3C028435.2' => 'cme', 'MELO3C028437.2' => 'cme', 'MELO3C028443.2' => 'cme', 'MELO3C028451.2' => 'cme', 'MELO3C028455.2' => 'cme', 'MELO3C028467.2' => 'cme', 'MELO3C028477.2' => 'cme', 'MELO3C028479.2' => 'cme', 'MELO3C028481.2' => 'cme', 'MELO3C028533.2' => 'cme', 'MELO3C028659.2' => 'cme', 'MELO3C028665.2' => 'cme', 'MELO3C028669.2' => 'cme', 'MELO3C028911.2' => 'cme', 'MELO3C028964.2' => 'cme', 'MELO3C028975.2' => 'cme', 'MELO3C029013.2' => 'cme', 'MELO3C029065.2' => 'cme', 'MELO3C029074.2' => 'cme', 'MELO3C029091.2' => 'cme', 'MELO3C029104.2' => 'cme', 'MELO3C029115.2' => 'cme', 'MELO3C029116.2' => 'cme', 'MELO3C029156.2' => 'cme', 'MELO3C029207.2' => 'cme', 'MELO3C029219.2' => 'cme', 'MELO3C029416.2' => 'cme', 'MELO3C029428.2' => 'cme', 'MELO3C029611.2' => 'cme', 'MELO3C029623.2' => 'cme', 'MELO3C029625.2' => 'cme', 'MELO3C029646.2' => 'cme', 'MELO3C029657.2' => 'cme', 'MELO3C029671.2' => 'cme', 'MELO3C029732.2' => 'cme', 'MELO3C029815.2' => 'cme', 'MELO3C029855.2' => 'cme', 'MELO3C029869.2' => 'cme', 'MELO3C029897.2' => 'cme', 'MELO3C029917.2' => 'cme', 'MELO3C029951.2' => 'cme', 'MELO3C029974.2' => 'cme', 'MELO3C030054.2' => 'cme', 'MELO3C030087.2' => 'cme', 'MELO3C030092.2' => 'cme', 'MELO3C030093.2' => 'cme', 'MELO3C030121.2' => 'cme', 'MELO3C030130.2' => 'cme', 'MELO3C030177.2' => 'cme', 'MELO3C030189.2' => 'cme', 'MELO3C030196.2' => 'cme', 'MELO3C030223.2' => 'cme', 'MELO3C030245.2' => 'cme', 'MELO3C030295.2' => 'cme', 'MELO3C030296.2' => 'cme', 'MELO3C030525.2' => 'cme', 'MELO3C030547.2' => 'cme', 'MELO3C030555.2' => 'cme', 'MELO3C030689.2' => 'cme', 'MELO3C030691.2' => 'cme', 'MELO3C030792.2' => 'cme', 'MELO3C030820.2' => 'cme', 'MELO3C030843.2' => 'cme', 'MELO3C030846.2' => 'cme', 'MELO3C030848.2' => 'cme', 'MELO3C030906.2' => 'cme', 'MELO3C030921.2' => 'cme', 'MELO3C030942.2' => 'cme', 'MELO3C030947.2' => 'cme', 'MELO3C031064.2' => 'cme', 'MELO3C031238.2' => 'cme', 'MELO3C031251.2' => 'cme', 'MELO3C031381.2' => 'cme', 'MELO3C031433.2' => 'cme', 'MELO3C031453.2' => 'cme', 'MELO3C031454.2' => 'cme', 'MELO3C031480.2' => 'cme', 'MELO3C031481.2' => 'cme', 'MELO3C031500.2' => 'cme', 'MELO3C031504.2' => 'cme', 'MELO3C031509.2' => 'cme', 'MELO3C031510.2' => 'cme', 'MELO3C031842.2' => 'cme', 'MELO3C031965.2' => 'cme', 'MELO3C031993.2' => 'cme', 'MELO3C032022.2' => 'cme', 'MELO3C032059.2' => 'cme', 'MELO3C032144.2' => 'cme', 'MELO3C032148.2' => 'cme', 'MELO3C032180.2' => 'cme', 'MELO3C032200.2' => 'cme', 'MELO3C032206.2' => 'cme', 'MELO3C032207.2' => 'cme', 'MELO3C032209.2' => 'cme', 'MELO3C032220.2' => 'cme', 'MELO3C032240.2' => 'cme', 'MELO3C032289.2' => 'cme', 'MELO3C032292.2' => 'cme', 'MELO3C032494.2' => 'cme', 'MELO3C032542.2' => 'cme', 'MELO3C032596.2' => 'cme', 'MELO3C032606.2' => 'cme', 'MELO3C032644.2' => 'cme', 'MELO3C032654.2' => 'cme', 'MELO3C032682.2' => 'cme', 'MELO3C032742.2' => 'cme', 'MELO3C032758.2' => 'cme', 'MELO3C032795.2' => 'cme', 'MELO3C032796.2' => 'cme', 'MELO3C032954.2' => 'cme', 'MELO3C032969.2' => 'cme', 'MELO3C033016.2' => 'cme', 'MELO3C033145.2' => 'cme', 'MELO3C033146.2' => 'cme', 'MELO3C033170.2' => 'cme', 'MELO3C033188.2' => 'cme', 'MELO3C033199.2' => 'cme', 'MELO3C033211.2' => 'cme', 'MELO3C033212.2' => 'cme', 'MELO3C033261.2' => 'cme', 'MELO3C033333.2' => 'cme', 'MELO3C033364.2' => 'cme', 'MELO3C033377.2' => 'cme', 'MELO3C033381.2' => 'cme', 'MELO3C033398.2' => 'cme', 'MELO3C033417.2' => 'cme', 'MELO3C033434.2' => 'cme', 'MELO3C033441.2' => 'cme', 'MELO3C033442.2' => 'cme', 'MELO3C033492.2' => 'cme', 'MELO3C033629.2' => 'cme', 'MELO3C033660.2' => 'cme', 'MELO3C033738.2' => 'cme', 'MELO3C033757.2' => 'cme', 'MELO3C033795.2' => 'cme', 'MELO3C033803.2' => 'cme', 'MELO3C033818.2' => 'cme', 'MELO3C033868.2' => 'cme', 'MELO3C033877.2' => 'cme', 'MELO3C033906.2' => 'cme', 'MELO3C033956.2' => 'cme', 'MELO3C034080.2' => 'cme', 'MELO3C034081.2' => 'cme', 'MELO3C034202.2' => 'cme', 'MELO3C034256.2' => 'cme', 'MELO3C034476.2' => 'cme', 'MELO3C034483.2' => 'cme', 'MELO3C034548.2' => 'cme', 'MELO3C034623.2' => 'cme', 'MELO3C034756.2' => 'cme', 'MELO3C034777.2' => 'cme', 'MELO3C034778.2' => 'cme', 'MELO3C034889.2' => 'cme', 'MELO3C034921.2' => 'cme', 'MELO3C034963.2' => 'cme', 'MELO3C034967.2' => 'cme', 'MELO3C035001.2' => 'cme', 'MELO3C035042.2' => 'cme', 'MELO3C035045.2' => 'cme', 'MELO3C035101.2' => 'cme', 'MELO3C035116.2' => 'cme', 'MELO3C035124.2' => 'cme', 'MELO3C035126.2' => 'cme', 'MELO3C035147.2' => 'cme', 'MELO3C035151.2' => 'cme', 'MELO3C035327.2' => 'cme', 'MELO3C035430.2' => 'cme', 'MELO3C035431.2' => 'cme', 'MELO3C035439.2' => 'cme', 'MELO3C035451.2' => 'cme', 'MELO3C035488.2' => 'cme', 'MELO3C035496.2' => 'cme', 'MELO3C035502.2' => 'cme', 'MELO3C035556.2' => 'cme', 'MELO3C035564.2' => 'cme', 'MELO3C035570.2' => 'cme', 'MELO3C035586.2' => 'cme', 'MELO3C035588.2' => 'cme', 'MELO3C035605.2' => 'cme', 'MELO3C035618.2' => 'cme', 'MELO3C035642.2' => 'cme', 'MELO3C035660.2' => 'cme', 'MELO3C035680.2' => 'cme', 'MELO3C035691.2' => 'cme', 'Nn1g01000' => 'nnu', 'Nn5g27284' => 'nnu', 'Psat3g065920' => 'psa', 'PSO832G2165' => 'pso', 'RcHm_v2.0_Chr7g0205671' => 'rch', 'Sed0003532' => 'sed', 'Sed0005282' => 'sed', 'Sed0005350' => 'sed', 'Sed0005563' => 'sed', 'Sed0005845' => 'sed', 'Sed0007091' => 'sed', 'Sed0007178' => 'sed', 'Sed0008442' => 'sed', 'Sed0011151' => 'sed', 'Sed0012349' => 'sed', 'Sed0015712' => 'sed', 'Sed0017352' => 'sed', 'Sed0017479' => 'sed', 'Sed0019314' => 'sed', 'Sed0021191' => 'sed', 'Sed0024321' => 'sed', 'Sed0026584' => 'sed', 'SHI25566' => 'shi', 'Thecc.05G132700' => 'tca', 'Thecc.08G138100' => 'tca', 'TPR.G13250' => 'tpr', 'TPR.G21616' => 'tpr', 'TWI18G0893' => 'twi', 'TWI53G1875' => 'twi', 'TWI63G1547' => 'twi' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001651' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001651' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001651' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001651' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '392', 'num_species' => '23' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'Ah.01g008150' => 'amhyb', 'arahy.Tifrunner.gnm1.ann1.06MZEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HEE39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0QZ25Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RQC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.497TK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4HXN36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5U3795' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ADW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B899F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGT6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6IU4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ0Q0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D661VL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2D6CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE068N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4V5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL4D0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INXA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP4QXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUU7A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5L10V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PCHE3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6JMF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYZ8NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q71493' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q82TWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5WE1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VKU54N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKDC23' => 'arhy', 'Atru.chr10.926' => 'acertr', 'Atru.chr12.953' => 'acertr', 'Atru.chr2.3198' => 'acertr', 'AUR62035422' => 'cqu', 'AUR62035709' => 'cqu', 'CANSAT35G1292' => 'cansat', 'CANSAT56G0820' => 'cansat', 'CANSAT64G1414' => 'cansat', 'CANSAT80G1436' => 'cansat', 'ClCG01G009750' => 'cla', 'ClCG05G014710' => 'cla', 'ClCG05G015880' => 'cla', 'ClCG08G001550' => 'cla', 'ClCG08G004530' => 'cla', 'ClCG09G011690' => 'cla', 'ClCG10G005540' => 'cla', 'ClCG10G008630' => 'cla', 'COL.COLO4_13231' => 'col', 'CsaV3_1G044430' => 'csa', 'CsaV3_1G045070' => 'csa', 'CsaV3_2G013960' => 'csa', 'CsaV3_3G000020' => 'csa', 'CsaV3_3G030680' => 'csa', 'CsaV3_4G027150' => 'csa', 'CsaV3_5G023560' => 'csa', 'CsaV3_5G024100' => 'csa', 'CsaV3_6G009900' => 'csa', 'DCAR_009785' => 'dca', 'DCAR_011368' => 'dca', 'DCAR_011369' => 'dca', 'DCAR_015799' => 'dca', 'DCAR_018898' => 'dca', 'EL10Ac9g21844' => 'bvu', 'FAN02G0208' => 'fan', 'FAN02G1352' => 'fan', 'Hma1.2p1_0035F.1_g022120' => 'hma', 'Manes.03G068716' => 'mes', 'MELO3C002765.2' => 'cme', 'MELO3C002895.2' => 'cme', 'MELO3C002985.2' => 'cme', 'MELO3C003790.2' => 'cme', 'MELO3C003865.2' => 'cme', 'MELO3C003883.2' => 'cme', 'MELO3C004014.2' => 'cme', 'MELO3C004976.2' => 'cme', 'MELO3C004979.2' => 'cme', 'MELO3C005010.2' => 'cme', 'MELO3C005087.2' => 'cme', 'MELO3C005110.2' => 'cme', 'MELO3C005115.2' => 'cme', 'MELO3C005119.2' => 'cme', 'MELO3C005280.2' => 'cme', 'MELO3C008122.2' => 'cme', 'MELO3C008205.2' => 'cme', 'MELO3C008276.2' => 'cme', 'MELO3C008463.2' => 'cme', 'MELO3C008748.2' => 'cme', 'MELO3C008755.2' => 'cme', 'MELO3C008868.2' => 'cme', 'MELO3C008893.2' => 'cme', 'MELO3C008915.2' => 'cme', 'MELO3C008989.2' => 'cme', 'MELO3C009040.2' => 'cme', 'MELO3C010138.2' => 'cme', 'MELO3C010406.2' => 'cme', 'MELO3C010513.2' => 'cme', 'MELO3C010531.2' => 'cme', 'MELO3C010541.2' => 'cme', 'MELO3C010558.2' => 'cme', 'MELO3C010562.2' => 'cme', 'MELO3C010596.2' => 'cme', 'MELO3C011581.2' => 'cme', 'MELO3C011642.2' => 'cme', 'MELO3C012637.2' => 'cme', 'MELO3C012830.2' => 'cme', 'MELO3C012907.2' => 'cme', 'MELO3C012981.2' => 'cme', 'MELO3C013062.2' => 'cme', 'MELO3C013106.2' => 'cme', 'MELO3C013166.2' => 'cme', 'MELO3C013181.2' => 'cme', 'MELO3C013412.2' => 'cme', 'MELO3C013643.2' => 'cme', 'MELO3C013978.2' => 'cme', 'MELO3C014135.2' => 'cme', 'MELO3C014887.2' => 'cme', 'MELO3C014919.2' => 'cme', 'MELO3C015092.2' => 'cme', 'MELO3C016228.2' => 'cme', 'MELO3C016240.2' => 'cme', 'MELO3C016461.2' => 'cme', 'MELO3C016511.2' => 'cme', 'MELO3C016611.2' => 'cme', 'MELO3C017335.2' => 'cme', 'MELO3C017494.2' => 'cme', 'MELO3C018204.2' => 'cme', 'MELO3C018304.2' => 'cme', 'MELO3C019025.2' => 'cme', 'MELO3C019042.2' => 'cme', 'MELO3C019084.2' => 'cme', 'MELO3C019088.2' => 'cme', 'MELO3C019268.2' => 'cme', 'MELO3C019393.2' => 'cme', 'MELO3C019530.2' => 'cme', 'MELO3C020019.2' => 'cme', 'MELO3C020165.2' => 'cme', 'MELO3C020454.2' => 'cme', 'MELO3C020647.2' => 'cme', 'MELO3C020687.2' => 'cme', 'MELO3C021049.2' => 'cme', 'MELO3C021105.2' => 'cme', 'MELO3C021833.2' => 'cme', 'MELO3C022191.2' => 'cme', 'MELO3C022645.2' => 'cme', 'MELO3C022940.2' => 'cme', 'MELO3C023000.2' => 'cme', 'MELO3C023118.2' => 'cme', 'MELO3C023134.2' => 'cme', 'MELO3C023670.2' => 'cme', 'MELO3C024650.2' => 'cme', 'MELO3C024801.2' => 'cme', 'MELO3C024802.2' => 'cme', 'MELO3C024858.2' => 'cme', 'MELO3C024931.2' => 'cme', 'MELO3C025001.2' => 'cme', 'MELO3C025329.2' => 'cme', 'MELO3C025382.2' => 'cme', 'MELO3C025455.2' => 'cme', 'MELO3C025792.2' => 'cme', 'MELO3C025979.2' => 'cme', 'MELO3C026040.2' => 'cme', 'MELO3C026069.2' => 'cme', 'MELO3C026091.2' => 'cme', 'MELO3C026719.2' => 'cme', 'MELO3C027071.2' => 'cme', 'MELO3C027449.2' => 'cme', 'MELO3C027530.2' => 'cme', 'MELO3C027591.2' => 'cme', 'MELO3C027597.2' => 'cme', 'MELO3C027706.2' => 'cme', 'MELO3C027743.2' => 'cme', 'MELO3C027758.2' => 'cme', 'MELO3C027794.2' => 'cme', 'MELO3C028011.2' => 'cme', 'MELO3C028082.2' => 'cme', 'MELO3C028097.2' => 'cme', 'MELO3C028136.2' => 'cme', 'MELO3C028411.2' => 'cme', 'MELO3C028435.2' => 'cme', 'MELO3C028437.2' => 'cme', 'MELO3C028443.2' => 'cme', 'MELO3C028451.2' => 'cme', 'MELO3C028455.2' => 'cme', 'MELO3C028467.2' => 'cme', 'MELO3C028477.2' => 'cme', 'MELO3C028479.2' => 'cme', 'MELO3C028481.2' => 'cme', 'MELO3C028533.2' => 'cme', 'MELO3C028659.2' => 'cme', 'MELO3C028665.2' => 'cme', 'MELO3C028669.2' => 'cme', 'MELO3C028911.2' => 'cme', 'MELO3C028964.2' => 'cme', 'MELO3C028975.2' => 'cme', 'MELO3C029013.2' => 'cme', 'MELO3C029065.2' => 'cme', 'MELO3C029074.2' => 'cme', 'MELO3C029091.2' => 'cme', 'MELO3C029104.2' => 'cme', 'MELO3C029115.2' => 'cme', 'MELO3C029116.2' => 'cme', 'MELO3C029156.2' => 'cme', 'MELO3C029207.2' => 'cme', 'MELO3C029219.2' => 'cme', 'MELO3C029416.2' => 'cme', 'MELO3C029428.2' => 'cme', 'MELO3C029611.2' => 'cme', 'MELO3C029623.2' => 'cme', 'MELO3C029625.2' => 'cme', 'MELO3C029646.2' => 'cme', 'MELO3C029657.2' => 'cme', 'MELO3C029671.2' => 'cme', 'MELO3C029732.2' => 'cme', 'MELO3C029815.2' => 'cme', 'MELO3C029855.2' => 'cme', 'MELO3C029869.2' => 'cme', 'MELO3C029897.2' => 'cme', 'MELO3C029917.2' => 'cme', 'MELO3C029951.2' => 'cme', 'MELO3C029974.2' => 'cme', 'MELO3C030054.2' => 'cme', 'MELO3C030087.2' => 'cme', 'MELO3C030092.2' => 'cme', 'MELO3C030093.2' => 'cme', 'MELO3C030121.2' => 'cme', 'MELO3C030130.2' => 'cme', 'MELO3C030177.2' => 'cme', 'MELO3C030189.2' => 'cme', 'MELO3C030196.2' => 'cme', 'MELO3C030223.2' => 'cme', 'MELO3C030245.2' => 'cme', 'MELO3C030295.2' => 'cme', 'MELO3C030296.2' => 'cme', 'MELO3C030525.2' => 'cme', 'MELO3C030547.2' => 'cme', 'MELO3C030555.2' => 'cme', 'MELO3C030689.2' => 'cme', 'MELO3C030691.2' => 'cme', 'MELO3C030792.2' => 'cme', 'MELO3C030820.2' => 'cme', 'MELO3C030843.2' => 'cme', 'MELO3C030846.2' => 'cme', 'MELO3C030848.2' => 'cme', 'MELO3C030906.2' => 'cme', 'MELO3C030921.2' => 'cme', 'MELO3C030942.2' => 'cme', 'MELO3C030947.2' => 'cme', 'MELO3C031064.2' => 'cme', 'MELO3C031238.2' => 'cme', 'MELO3C031251.2' => 'cme', 'MELO3C031381.2' => 'cme', 'MELO3C031433.2' => 'cme', 'MELO3C031453.2' => 'cme', 'MELO3C031454.2' => 'cme', 'MELO3C031480.2' => 'cme', 'MELO3C031481.2' => 'cme', 'MELO3C031500.2' => 'cme', 'MELO3C031504.2' => 'cme', 'MELO3C031509.2' => 'cme', 'MELO3C031510.2' => 'cme', 'MELO3C031842.2' => 'cme', 'MELO3C031965.2' => 'cme', 'MELO3C031993.2' => 'cme', 'MELO3C032022.2' => 'cme', 'MELO3C032059.2' => 'cme', 'MELO3C032144.2' => 'cme', 'MELO3C032148.2' => 'cme', 'MELO3C032180.2' => 'cme', 'MELO3C032200.2' => 'cme', 'MELO3C032206.2' => 'cme', 'MELO3C032207.2' => 'cme', 'MELO3C032209.2' => 'cme', 'MELO3C032220.2' => 'cme', 'MELO3C032240.2' => 'cme', 'MELO3C032289.2' => 'cme', 'MELO3C032292.2' => 'cme', 'MELO3C032494.2' => 'cme', 'MELO3C032542.2' => 'cme', 'MELO3C032596.2' => 'cme', 'MELO3C032606.2' => 'cme', 'MELO3C032644.2' => 'cme', 'MELO3C032654.2' => 'cme', 'MELO3C032682.2' => 'cme', 'MELO3C032742.2' => 'cme', 'MELO3C032758.2' => 'cme', 'MELO3C032795.2' => 'cme', 'MELO3C032796.2' => 'cme', 'MELO3C032954.2' => 'cme', 'MELO3C032969.2' => 'cme', 'MELO3C033016.2' => 'cme', 'MELO3C033145.2' => 'cme', 'MELO3C033146.2' => 'cme', 'MELO3C033170.2' => 'cme', 'MELO3C033188.2' => 'cme', 'MELO3C033199.2' => 'cme', 'MELO3C033211.2' => 'cme', 'MELO3C033212.2' => 'cme', 'MELO3C033261.2' => 'cme', 'MELO3C033333.2' => 'cme', 'MELO3C033364.2' => 'cme', 'MELO3C033377.2' => 'cme', 'MELO3C033381.2' => 'cme', 'MELO3C033398.2' => 'cme', 'MELO3C033417.2' => 'cme', 'MELO3C033434.2' => 'cme', 'MELO3C033441.2' => 'cme', 'MELO3C033442.2' => 'cme', 'MELO3C033492.2' => 'cme', 'MELO3C033629.2' => 'cme', 'MELO3C033660.2' => 'cme', 'MELO3C033738.2' => 'cme', 'MELO3C033757.2' => 'cme', 'MELO3C033795.2' => 'cme', 'MELO3C033803.2' => 'cme', 'MELO3C033818.2' => 'cme', 'MELO3C033868.2' => 'cme', 'MELO3C033877.2' => 'cme', 'MELO3C033906.2' => 'cme', 'MELO3C033956.2' => 'cme', 'MELO3C034080.2' => 'cme', 'MELO3C034081.2' => 'cme', 'MELO3C034202.2' => 'cme', 'MELO3C034256.2' => 'cme', 'MELO3C034476.2' => 'cme', 'MELO3C034483.2' => 'cme', 'MELO3C034548.2' => 'cme', 'MELO3C034623.2' => 'cme', 'MELO3C034756.2' => 'cme', 'MELO3C034777.2' => 'cme', 'MELO3C034778.2' => 'cme', 'MELO3C034889.2' => 'cme', 'MELO3C034921.2' => 'cme', 'MELO3C034963.2' => 'cme', 'MELO3C034967.2' => 'cme', 'MELO3C035001.2' => 'cme', 'MELO3C035042.2' => 'cme', 'MELO3C035045.2' => 'cme', 'MELO3C035101.2' => 'cme', 'MELO3C035116.2' => 'cme', 'MELO3C035124.2' => 'cme', 'MELO3C035126.2' => 'cme', 'MELO3C035147.2' => 'cme', 'MELO3C035151.2' => 'cme', 'MELO3C035327.2' => 'cme', 'MELO3C035430.2' => 'cme', 'MELO3C035431.2' => 'cme', 'MELO3C035439.2' => 'cme', 'MELO3C035451.2' => 'cme', 'MELO3C035488.2' => 'cme', 'MELO3C035496.2' => 'cme', 'MELO3C035502.2' => 'cme', 'MELO3C035556.2' => 'cme', 'MELO3C035564.2' => 'cme', 'MELO3C035570.2' => 'cme', 'MELO3C035586.2' => 'cme', 'MELO3C035588.2' => 'cme', 'MELO3C035605.2' => 'cme', 'MELO3C035618.2' => 'cme', 'MELO3C035642.2' => 'cme', 'MELO3C035660.2' => 'cme', 'MELO3C035680.2' => 'cme', 'MELO3C035691.2' => 'cme', 'Nn1g01000' => 'nnu', 'Nn5g27284' => 'nnu', 'Psat3g065920' => 'psa', 'PSO832G2165' => 'pso', 'RcHm_v2.0_Chr7g0205671' => 'rch', 'Sed0003532' => 'sed', 'Sed0005282' => 'sed', 'Sed0005350' => 'sed', 'Sed0005563' => 'sed', 'Sed0005845' => 'sed', 'Sed0007091' => 'sed', 'Sed0007178' => 'sed', 'Sed0008442' => 'sed', 'Sed0011151' => 'sed', 'Sed0012349' => 'sed', 'Sed0015712' => 'sed', 'Sed0017352' => 'sed', 'Sed0017479' => 'sed', 'Sed0019314' => 'sed', 'Sed0021191' => 'sed', 'Sed0024321' => 'sed', 'Sed0026584' => 'sed', 'SHI25566' => 'shi', 'Thecc.05G132700' => 'tca', 'Thecc.08G138100' => 'tca', 'TPR.G13250' => 'tpr', 'TPR.G21616' => 'tpr', 'TWI18G0893' => 'twi', 'TWI53G1875' => 'twi', 'TWI63G1547' => 'twi' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001651', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001651' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001651', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '392', 'num_species' => '23' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001651' ) ), 'genes' => array( 'Ah.01g008150' => 'amhyb', 'arahy.Tifrunner.gnm1.ann1.06MZEJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HEE39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0QZ25Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3RQC98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.497TK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4HXN36' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5U3795' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7ADW8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8B899F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGT6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6IU4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CJ0Q0H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D661VL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2D6CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE068N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4V5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HL4D0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INXA8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IP4QXJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LUU7A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5L10V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PCHE3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PG6JMF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYZ8NF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q71493' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q82TWL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5WE1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VKU54N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZKDC23' => 'arhy', 'Atru.chr10.926' => 'acertr', 'Atru.chr12.953' => 'acertr', 'Atru.chr2.3198' => 'acertr', 'AUR62035422' => 'cqu', 'AUR62035709' => 'cqu', 'CANSAT35G1292' => 'cansat', 'CANSAT56G0820' => 'cansat', 'CANSAT64G1414' => 'cansat', 'CANSAT80G1436' => 'cansat', 'ClCG01G009750' => 'cla', 'ClCG05G014710' => 'cla', 'ClCG05G015880' => 'cla', 'ClCG08G001550' => 'cla', 'ClCG08G004530' => 'cla', 'ClCG09G011690' => 'cla', 'ClCG10G005540' => 'cla', 'ClCG10G008630' => 'cla', 'COL.COLO4_13231' => 'col', 'CsaV3_1G044430' => 'csa', 'CsaV3_1G045070' => 'csa', 'CsaV3_2G013960' => 'csa', 'CsaV3_3G000020' => 'csa', 'CsaV3_3G030680' => 'csa', 'CsaV3_4G027150' => 'csa', 'CsaV3_5G023560' => 'csa', 'CsaV3_5G024100' => 'csa', 'CsaV3_6G009900' => 'csa', 'DCAR_009785' => 'dca', 'DCAR_011368' => 'dca', 'DCAR_011369' => 'dca', 'DCAR_015799' => 'dca', 'DCAR_018898' => 'dca', 'EL10Ac9g21844' => 'bvu', 'FAN02G0208' => 'fan', 'FAN02G1352' => 'fan', 'Hma1.2p1_0035F.1_g022120' => 'hma', 'Manes.03G068716' => 'mes', 'MELO3C002765.2' => 'cme', 'MELO3C002895.2' => 'cme', 'MELO3C002985.2' => 'cme', 'MELO3C003790.2' => 'cme', 'MELO3C003865.2' => 'cme', 'MELO3C003883.2' => 'cme', 'MELO3C004014.2' => 'cme', 'MELO3C004976.2' => 'cme', 'MELO3C004979.2' => 'cme', 'MELO3C005010.2' => 'cme', 'MELO3C005087.2' => 'cme', 'MELO3C005110.2' => 'cme', 'MELO3C005115.2' => 'cme', 'MELO3C005119.2' => 'cme', 'MELO3C005280.2' => 'cme', 'MELO3C008122.2' => 'cme', 'MELO3C008205.2' => 'cme', 'MELO3C008276.2' => 'cme', 'MELO3C008463.2' => 'cme', 'MELO3C008748.2' => 'cme', 'MELO3C008755.2' => 'cme', 'MELO3C008868.2' => 'cme', 'MELO3C008893.2' => 'cme', 'MELO3C008915.2' => 'cme', 'MELO3C008989.2' => 'cme', 'MELO3C009040.2' => 'cme', 'MELO3C010138.2' => 'cme', 'MELO3C010406.2' => 'cme', 'MELO3C010513.2' => 'cme', 'MELO3C010531.2' => 'cme', 'MELO3C010541.2' => 'cme', 'MELO3C010558.2' => 'cme', 'MELO3C010562.2' => 'cme', 'MELO3C010596.2' => 'cme', 'MELO3C011581.2' => 'cme', 'MELO3C011642.2' => 'cme', 'MELO3C012637.2' => 'cme', 'MELO3C012830.2' => 'cme', 'MELO3C012907.2' => 'cme', 'MELO3C012981.2' => 'cme', 'MELO3C013062.2' => 'cme', 'MELO3C013106.2' => 'cme', 'MELO3C013166.2' => 'cme', 'MELO3C013181.2' => 'cme', 'MELO3C013412.2' => 'cme', 'MELO3C013643.2' => 'cme', 'MELO3C013978.2' => 'cme', 'MELO3C014135.2' => 'cme', 'MELO3C014887.2' => 'cme', 'MELO3C014919.2' => 'cme', 'MELO3C015092.2' => 'cme', 'MELO3C016228.2' => 'cme', 'MELO3C016240.2' => 'cme', 'MELO3C016461.2' => 'cme', 'MELO3C016511.2' => 'cme', 'MELO3C016611.2' => 'cme', 'MELO3C017335.2' => 'cme', 'MELO3C017494.2' => 'cme', 'MELO3C018204.2' => 'cme', 'MELO3C018304.2' => 'cme', 'MELO3C019025.2' => 'cme', 'MELO3C019042.2' => 'cme', 'MELO3C019084.2' => 'cme', 'MELO3C019088.2' => 'cme', 'MELO3C019268.2' => 'cme', 'MELO3C019393.2' => 'cme', 'MELO3C019530.2' => 'cme', 'MELO3C020019.2' => 'cme', 'MELO3C020165.2' => 'cme', 'MELO3C020454.2' => 'cme', 'MELO3C020647.2' => 'cme', 'MELO3C020687.2' => 'cme', 'MELO3C021049.2' => 'cme', 'MELO3C021105.2' => 'cme', 'MELO3C021833.2' => 'cme', 'MELO3C022191.2' => 'cme', 'MELO3C022645.2' => 'cme', 'MELO3C022940.2' => 'cme', 'MELO3C023000.2' => 'cme', 'MELO3C023118.2' => 'cme', 'MELO3C023134.2' => 'cme', 'MELO3C023670.2' => 'cme', 'MELO3C024650.2' => 'cme', 'MELO3C024801.2' => 'cme', 'MELO3C024802.2' => 'cme', 'MELO3C024858.2' => 'cme', 'MELO3C024931.2' => 'cme', 'MELO3C025001.2' => 'cme', 'MELO3C025329.2' => 'cme', 'MELO3C025382.2' => 'cme', 'MELO3C025455.2' => 'cme', 'MELO3C025792.2' => 'cme', 'MELO3C025979.2' => 'cme', 'MELO3C026040.2' => 'cme', 'MELO3C026069.2' => 'cme', 'MELO3C026091.2' => 'cme', 'MELO3C026719.2' => 'cme', 'MELO3C027071.2' => 'cme', 'MELO3C027449.2' => 'cme', 'MELO3C027530.2' => 'cme', 'MELO3C027591.2' => 'cme', 'MELO3C027597.2' => 'cme', 'MELO3C027706.2' => 'cme', 'MELO3C027743.2' => 'cme', 'MELO3C027758.2' => 'cme', 'MELO3C027794.2' => 'cme', 'MELO3C028011.2' => 'cme', 'MELO3C028082.2' => 'cme', 'MELO3C028097.2' => 'cme', 'MELO3C028136.2' => 'cme', 'MELO3C028411.2' => 'cme', 'MELO3C028435.2' => 'cme', 'MELO3C028437.2' => 'cme', 'MELO3C028443.2' => 'cme', 'MELO3C028451.2' => 'cme', 'MELO3C028455.2' => 'cme', 'MELO3C028467.2' => 'cme', 'MELO3C028477.2' => 'cme', 'MELO3C028479.2' => 'cme', 'MELO3C028481.2' => 'cme', 'MELO3C028533.2' => 'cme', 'MELO3C028659.2' => 'cme', 'MELO3C028665.2' => 'cme', 'MELO3C028669.2' => 'cme', 'MELO3C028911.2' => 'cme', 'MELO3C028964.2' => 'cme', 'MELO3C028975.2' => 'cme', 'MELO3C029013.2' => 'cme', 'MELO3C029065.2' => 'cme', 'MELO3C029074.2' => 'cme', 'MELO3C029091.2' => 'cme', 'MELO3C029104.2' => 'cme', 'MELO3C029115.2' => 'cme', 'MELO3C029116.2' => 'cme', 'MELO3C029156.2' => 'cme', 'MELO3C029207.2' => 'cme', 'MELO3C029219.2' => 'cme', 'MELO3C029416.2' => 'cme', 'MELO3C029428.2' => 'cme', 'MELO3C029611.2' => 'cme', 'MELO3C029623.2' => 'cme', 'MELO3C029625.2' => 'cme', 'MELO3C029646.2' => 'cme', 'MELO3C029657.2' => 'cme', 'MELO3C029671.2' => 'cme', 'MELO3C029732.2' => 'cme', 'MELO3C029815.2' => 'cme', 'MELO3C029855.2' => 'cme', 'MELO3C029869.2' => 'cme', 'MELO3C029897.2' => 'cme', 'MELO3C029917.2' => 'cme', 'MELO3C029951.2' => 'cme', 'MELO3C029974.2' => 'cme', 'MELO3C030054.2' => 'cme', 'MELO3C030087.2' => 'cme', 'MELO3C030092.2' => 'cme', 'MELO3C030093.2' => 'cme', 'MELO3C030121.2' => 'cme', 'MELO3C030130.2' => 'cme', 'MELO3C030177.2' => 'cme', 'MELO3C030189.2' => 'cme', 'MELO3C030196.2' => 'cme', 'MELO3C030223.2' => 'cme', 'MELO3C030245.2' => 'cme', 'MELO3C030295.2' => 'cme', 'MELO3C030296.2' => 'cme', 'MELO3C030525.2' => 'cme', 'MELO3C030547.2' => 'cme', 'MELO3C030555.2' => 'cme', 'MELO3C030689.2' => 'cme', 'MELO3C030691.2' => 'cme', 'MELO3C030792.2' => 'cme', 'MELO3C030820.2' => 'cme', 'MELO3C030843.2' => 'cme', 'MELO3C030846.2' => 'cme', 'MELO3C030848.2' => 'cme', 'MELO3C030906.2' => 'cme', 'MELO3C030921.2' => 'cme', 'MELO3C030942.2' => 'cme', 'MELO3C030947.2' => 'cme', 'MELO3C031064.2' => 'cme', 'MELO3C031238.2' => 'cme', 'MELO3C031251.2' => 'cme', 'MELO3C031381.2' => 'cme', 'MELO3C031433.2' => 'cme', 'MELO3C031453.2' => 'cme', 'MELO3C031454.2' => 'cme', 'MELO3C031480.2' => 'cme', 'MELO3C031481.2' => 'cme', 'MELO3C031500.2' => 'cme', 'MELO3C031504.2' => 'cme', 'MELO3C031509.2' => 'cme', 'MELO3C031510.2' => 'cme', 'MELO3C031842.2' => 'cme', 'MELO3C031965.2' => 'cme', 'MELO3C031993.2' => 'cme', 'MELO3C032022.2' => 'cme', 'MELO3C032059.2' => 'cme', 'MELO3C032144.2' => 'cme', 'MELO3C032148.2' => 'cme', 'MELO3C032180.2' => 'cme', 'MELO3C032200.2' => 'cme', 'MELO3C032206.2' => 'cme', 'MELO3C032207.2' => 'cme', 'MELO3C032209.2' => 'cme', 'MELO3C032220.2' => 'cme', 'MELO3C032240.2' => 'cme', 'MELO3C032289.2' => 'cme', 'MELO3C032292.2' => 'cme', 'MELO3C032494.2' => 'cme', 'MELO3C032542.2' => 'cme', 'MELO3C032596.2' => 'cme', 'MELO3C032606.2' => 'cme', 'MELO3C032644.2' => 'cme', 'MELO3C032654.2' => 'cme', 'MELO3C032682.2' => 'cme', 'MELO3C032742.2' => 'cme', 'MELO3C032758.2' => 'cme', 'MELO3C032795.2' => 'cme', 'MELO3C032796.2' => 'cme', 'MELO3C032954.2' => 'cme', 'MELO3C032969.2' => 'cme', 'MELO3C033016.2' => 'cme', 'MELO3C033145.2' => 'cme', 'MELO3C033146.2' => 'cme', 'MELO3C033170.2' => 'cme', 'MELO3C033188.2' => 'cme', 'MELO3C033199.2' => 'cme', 'MELO3C033211.2' => 'cme', 'MELO3C033212.2' => 'cme', 'MELO3C033261.2' => 'cme', 'MELO3C033333.2' => 'cme', 'MELO3C033364.2' => 'cme', 'MELO3C033377.2' => 'cme', 'MELO3C033381.2' => 'cme', 'MELO3C033398.2' => 'cme', 'MELO3C033417.2' => 'cme', 'MELO3C033434.2' => 'cme', 'MELO3C033441.2' => 'cme', 'MELO3C033442.2' => 'cme', 'MELO3C033492.2' => 'cme', 'MELO3C033629.2' => 'cme', 'MELO3C033660.2' => 'cme', 'MELO3C033738.2' => 'cme', 'MELO3C033757.2' => 'cme', 'MELO3C033795.2' => 'cme', 'MELO3C033803.2' => 'cme', 'MELO3C033818.2' => 'cme', 'MELO3C033868.2' => 'cme', 'MELO3C033877.2' => 'cme', 'MELO3C033906.2' => 'cme', 'MELO3C033956.2' => 'cme', 'MELO3C034080.2' => 'cme', 'MELO3C034081.2' => 'cme', 'MELO3C034202.2' => 'cme', 'MELO3C034256.2' => 'cme', 'MELO3C034476.2' => 'cme', 'MELO3C034483.2' => 'cme', 'MELO3C034548.2' => 'cme', 'MELO3C034623.2' => 'cme', 'MELO3C034756.2' => 'cme', 'MELO3C034777.2' => 'cme', 'MELO3C034778.2' => 'cme', 'MELO3C034889.2' => 'cme', 'MELO3C034921.2' => 'cme', 'MELO3C034963.2' => 'cme', 'MELO3C034967.2' => 'cme', 'MELO3C035001.2' => 'cme', 'MELO3C035042.2' => 'cme', 'MELO3C035045.2' => 'cme', 'MELO3C035101.2' => 'cme', 'MELO3C035116.2' => 'cme', 'MELO3C035124.2' => 'cme', 'MELO3C035126.2' => 'cme', 'MELO3C035147.2' => 'cme', 'MELO3C035151.2' => 'cme', 'MELO3C035327.2' => 'cme', 'MELO3C035430.2' => 'cme', 'MELO3C035431.2' => 'cme', 'MELO3C035439.2' => 'cme', 'MELO3C035451.2' => 'cme', 'MELO3C035488.2' => 'cme', 'MELO3C035496.2' => 'cme', 'MELO3C035502.2' => 'cme', 'MELO3C035556.2' => 'cme', 'MELO3C035564.2' => 'cme', 'MELO3C035570.2' => 'cme', 'MELO3C035586.2' => 'cme', 'MELO3C035588.2' => 'cme', 'MELO3C035605.2' => 'cme', 'MELO3C035618.2' => 'cme', 'MELO3C035642.2' => 'cme', 'MELO3C035660.2' => 'cme', 'MELO3C035680.2' => 'cme', 'MELO3C035691.2' => 'cme', 'Nn1g01000' => 'nnu', 'Nn5g27284' => 'nnu', 'Psat3g065920' => 'psa', 'PSO832G2165' => 'pso', 'RcHm_v2.0_Chr7g0205671' => 'rch', 'Sed0003532' => 'sed', 'Sed0005282' => 'sed', 'Sed0005350' => 'sed', 'Sed0005563' => 'sed', 'Sed0005845' => 'sed', 'Sed0007091' => 'sed', 'Sed0007178' => 'sed', 'Sed0008442' => 'sed', 'Sed0011151' => 'sed', 'Sed0012349' => 'sed', 'Sed0015712' => 'sed', 'Sed0017352' => 'sed', 'Sed0017479' => 'sed', 'Sed0019314' => 'sed', 'Sed0021191' => 'sed', 'Sed0024321' => 'sed', 'Sed0026584' => 'sed', 'SHI25566' => 'shi', 'Thecc.05G132700' => 'tca', 'Thecc.08G138100' => 'tca', 'TPR.G13250' => 'tpr', 'TPR.G21616' => 'tpr', 'TWI18G0893' => 'twi', 'TWI53G1875' => 'twi', 'TWI63G1547' => 'twi' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001651' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001651' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001651' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001651' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151