Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001506', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '420', 'num_species' => '46' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A07p38470' => 'bna', 'A08p31020' => 'bna', 'Aa31LG7G2050' => 'aar', 'Actinidia16357' => 'ach', 'Ah.08g217430' => 'amhyb', 'Ah.15g094760' => 'amhyb', 'AL1G29490' => 'aly', 'AT1G17240' => 'ath', 'AT1G17250' => 'ath', 'Atru.chr12.1322' => 'acertr', 'Atru.chr12.1324' => 'acertr', 'Atru.chr6.590' => 'acertr', 'Atru.chr8.2121' => 'acertr', 'AUR62001389' => 'cqu', 'AUR62001390' => 'cqu', 'AUR62025605' => 'cqu', 'AUR62025607' => 'cqu', 'AUR62044634' => 'cqu', 'BcaB03g13011' => 'bca', 'BcaB07g34037' => 'bca', 'BcaC05g25653' => 'bca', 'BcaC07g38838' => 'bca', 'BcaC07g41409' => 'bca', 'BcaC07g41431' => 'bca', 'BolC5t30273H' => 'bol', 'BolC8t49404H' => 'bol', 'BolC8t51947H' => 'bol', 'BraA08t35031Z' => 'bra', 'C05p15660' => 'bna', 'C08p17780' => 'bna', 'C08p43980' => 'bna', 'CARHR017820' => 'chi', 'CARHR261670' => 'chi', 'Cc00_g08540' => 'ccan', 'Cc07_g18760' => 'ccan', 'Ciclev10003246m.g' => 'ccl', 'Ciclev10003327m.g' => 'ccl', 'Ciclev10003983m.g' => 'ccl', 'CiPaw.02G055400' => 'cil', 'CiPaw.02G055500' => 'cil', 'CiPaw.02G055600' => 'cil', 'CiPaw.12G005000' => 'cil', 'CiPaw.12G005100' => 'cil', 'CiPaw.12G005300' => 'cil', 'CiPaw.12G005500' => 'cil', 'CiPaw.12G005700' => 'cil', 'CiPaw.13G168900' => 'cil', 'CiPaw.13G169000' => 'cil', 'CiPaw.13G169100' => 'cil', 'CiPaw.13G169200' => 'cil', 'CiPaw.14G126900' => 'cil', 'CiPaw.14G127500' => 'cil', 'CiPaw.14G127900' => 'cil', 'CiPaw.14G128100' => 'cil', 'COL.COLO4_11779' => 'col', 'Dinv36209' => 'din', 'Dinv36211' => 'din', 'EL10Ac7g18247' => 'bvu', 'Eucgr.C04048' => 'egr', 'Eucgr.L00617' => 'egr', 'FAN02G1459' => 'fan', 'FAN02G3970' => 'fan', 'FAN05G4510' => 'fan', 'FAN09G1045' => 'fan', 'FAN11G0089' => 'fan', 'FAN11G0356' => 'fan', 'FAN11G0737' => 'fan', 'FAN11G0797' => 'fan', 'FAN11G0801' => 'fan', 'FAN11G0839' => 'fan', 'FAN11G1318' => 'fan', 'FAN11G1337' => 'fan', 'FAN11G1463' => 'fan', 'FAN11G1557' => 'fan', 'FAN11G1948' => 'fan', 'FAN11G2167' => 'fan', 'FAN11G2215' => 'fan', 'FAN11G2219' => 'fan', 'FAN11G3464' => 'fan', 'FAN14G0819' => 'fan', 'FAN14G3138' => 'fan', 'FAN16G0055' => 'fan', 'FAN16G1850' => 'fan', 'FAN16G3133' => 'fan', 'FAN16G3150' => 'fan', 'FAN16G3500' => 'fan', 'FAN17G1113' => 'fan', 'FAN17G1705' => 'fan', 'FAN18G0990' => 'fan', 'FAN18G1517' => 'fan', 'FAN20G2034' => 'fan', 'FAN21G0338' => 'fan', 'FAN21G0398' => 'fan', 'FAN21G0463' => 'fan', 'FAN21G0758' => 'fan', 'FAN21G0832' => 'fan', 'FAN21G1104' => 'fan', 'FAN21G1410' => 'fan', 'FAN21G2161' => 'fan', 'FAN21G2324' => 'fan', 'FAN21G2334' => 'fan', 'FAN21G2402' => 'fan', 'FAN21G3266' => 'fan', 'FAN21G3398' => 'fan', 'FAN21G3761' => 'fan', 'FAN25G0304' => 'fan', 'FAN25G0712' => 'fan', 'FAN25G0867' => 'fan', 'FAN25G1095' => 'fan', 'FAN25G1606' => 'fan', 'FAN25G2167' => 'fan', 'FAN25G2247' => 'fan', 'FAN25G2420' => 'fan', 'FAN25G2730' => 'fan', 'FAN25G3207' => 'fan', 'FAN25G3351' => 'fan', 'FAN25G3783' => 'fan', 'FvH4_3g20130' => 'fve', 'FvH4_3g38570' => 'fve', 'FvH4_3g39440' => 'fve', 'FvH4_3g39490' => 'fve', 'FvH4_3g44120' => 'fve', 'FvH4_3g44870' => 'fve', 'FvH4_3g44871' => 'fve', 'FvH4_3g44872' => 'fve', 'FvH4_3g44880' => 'fve', 'FvH4_3g44920' => 'fve', 'FvH4_3g44930' => 'fve', 'FvH4_3g44961' => 'fve', 'FvH4_3g45010' => 'fve', 'FvH4_3g45260' => 'fve', 'FvH4_3g45620' => 'fve', 'FvH4_5g12510' => 'fve', 'FvH4_6g36780' => 'fve', 'FvH4_6g36790' => 'fve', 'FvH4_6g36810' => 'fve', 'Gohir.D05G201880' => 'ghi', 'Gorai.005G078900' => 'gra', 'Gorai.009G207700' => 'gra', 'HanXRQChr08g0231561' => 'han', 'HanXRQChr09g0238721' => 'han', 'HanXRQChr09g0238741' => 'han', 'HanXRQChr09g0238751' => 'han', 'HanXRQChr09g0238781' => 'han', 'HanXRQChr09g0238791' => 'han', 'HanXRQChr09g0265391' => 'han', 'HanXRQChr16g0497971' => 'han', 'HanXRQChr16g0497981' => 'han', 'Haze_14215' => 'cav', 'Haze_20041' => 'cav', 'Haze_23027' => 'cav', 'Haze_23090' => 'cav', 'Haze_23091' => 'cav', 'Haze_23094' => 'cav', 'Haze_23095' => 'cav', 'Haze_23096' => 'cav', 'Haze_23097' => 'cav', 'Haze_23098' => 'cav', 'Haze_23099' => 'cav', 'Haze_23100' => 'cav', 'Haze_23683' => 'cav', 'Haze_23684' => 'cav', 'Hma1.2p1_1043F.1_g251220' => 'hma', 'Lj9A144T48' => 'lonja', 'Lj9A144T49' => 'lonja', 'Lj9A144T50' => 'lonja', 'Lj9C144T10' => 'lonja', 'Lj9C144T11' => 'lonja', 'Lj9C144T19' => 'lonja', 'Lj9C144T5' => 'lonja', 'Lj9C144T6' => 'lonja', 'Lj9C144T7' => 'lonja', 'Manes.07G018000' => 'mes', 'MD00G1077300' => 'mdo', 'MD00G1077400' => 'mdo', 'MD00G1077600' => 'mdo', 'MD00G1077700' => 'mdo', 'MD00G1077800' => 'mdo', 'MD00G1082100' => 'mdo', 'MD00G1082200' => 'mdo', 'MD00G1082300' => 'mdo', 'MD00G1082400' => 'mdo', 'MD00G1082500' => 'mdo', 'MD00G1082600' => 'mdo', 'MD00G1082900' => 'mdo', 'MD02G1111300' => 'mdo', 'MD03G1017100' => 'mdo', 'MD03G1017300' => 'mdo', 'MD03G1017400' => 'mdo', 'MD03G1017700' => 'mdo', 'MD03G1017800' => 'mdo', 'MD03G1018000' => 'mdo', 'MD03G1018100' => 'mdo', 'MD03G1018300' => 'mdo', 'MD03G1019300' => 'mdo', 'MD03G1022100' => 'mdo', 'MD03G1131400' => 'mdo', 'MD03G1178700' => 'mdo', 'MD03G1192900' => 'mdo', 'MD03G1224400' => 'mdo', 'MD03G1227100' => 'mdo', 'MD03G1240600' => 'mdo', 'MD03G1243900' => 'mdo', 'MD03G1244000' => 'mdo', 'MD03G1244200' => 'mdo', 'MD04G1167200' => 'mdo', 'MD05G1078800' => 'mdo', 'MD05G1342800' => 'mdo', 'MD06G1055100' => 'mdo', 'MD09G1166700' => 'mdo', 'MD09G1166800' => 'mdo', 'MD09G1166900' => 'mdo', 'MD10G1316900' => 'mdo', 'MD10G1317500' => 'mdo', 'MD11G1017800' => 'mdo', 'MD11G1017900' => 'mdo', 'MD11G1018100' => 'mdo', 'MD11G1018300' => 'mdo', 'MD11G1018400' => 'mdo', 'MD11G1018500' => 'mdo', 'MD11G1018800' => 'mdo', 'MD11G1018900' => 'mdo', 'MD11G1019000' => 'mdo', 'MD11G1247900' => 'mdo', 'MD11G1248200' => 'mdo', 'MD11G1248600' => 'mdo', 'MD11G1248700' => 'mdo', 'MD11G1249200' => 'mdo', 'MD11G1249300' => 'mdo', 'MD11G1249400' => 'mdo', 'MD13G1259100' => 'mdo', 'MD14G1097700' => 'mdo', 'Migut.N00536' => 'egut', 'MSTRG.12052' => 'ama', 'MSTRG.12803' => 'ama', 'MSTRG.18036' => 'ama', 'MSTRG.25554' => 'ama', 'Oeu019520.1' => 'oeu', 'Oeu019522.1' => 'oeu', 'Oeu019524.1' => 'oeu', 'Oeu019525.1' => 'oeu', 'Oeu019526.1' => 'oeu', 'Oeu019527.1' => 'oeu', 'Oeu021012.1' => 'oeu', 'Oeu023970.1' => 'oeu', 'Oeu023971.1' => 'oeu', 'Oeu060899.2' => 'oeu', 'Oeu060903.1' => 'oeu', 'Oeu060905.1' => 'oeu', 'Os02g0155400' => 'osa', 'Os02g0155600' => 'osa', 'Os02g0155700' => 'osa', 'Os02g0155900' => 'osa', 'Os02g0156200' => 'osa', 'Os02g0156400' => 'osa', 'Os02g0156600' => 'osa', 'Os02g0156633' => 'osa', 'Os02g0156800' => 'osa', 'Os02g0157000' => 'osa', 'Os02g0157100' => 'osa', 'Os02g0157200' => 'osa', 'Os02g0157400' => 'osa', 'Os02g0515125' => 'osa', 'Peaxi162Scf00652g00043' => 'pax', 'Prupe.2G076700' => 'ppe', 'Prupe.2G098300' => 'ppe', 'Prupe.2G098400' => 'ppe', 'Prupe.2G098500' => 'ppe', 'Prupe.2G104600' => 'ppe', 'Prupe.3G024400' => 'ppe', 'Prupe.3G024600' => 'ppe', 'Prupe.3G024700' => 'ppe', 'Prupe.4G161800' => 'ppe', 'Prupe.4G162000' => 'ppe', 'Prupe.4G162500' => 'ppe', 'Prupe.4G162600' => 'ppe', 'Prupe.4G162700' => 'ppe', 'Prupe.4G162800' => 'ppe', 'Prupe.4G162900' => 'ppe', 'Prupe.4G163000' => 'ppe', 'Prupe.4G163100' => 'ppe', 'Prupe.4G163200' => 'ppe', 'Prupe.4G163400' => 'ppe', 'Prupe.4G163500' => 'ppe', 'Prupe.4G163700' => 'ppe', 'Prupe.4G163800' => 'ppe', 'Prupe.4G164200' => 'ppe', 'Prupe.4G168500' => 'ppe', 'Prupe.4G168700' => 'ppe', 'Prupe.4G168800' => 'ppe', 'Prupe.4G169200' => 'ppe', 'Prupe.4G169300' => 'ppe', 'Prupe.4G169500' => 'ppe', 'Prupe.4G169600' => 'ppe', 'Prupe.4G169700' => 'ppe', 'Prupe.4G169800' => 'ppe', 'Prupe.4G169900' => 'ppe', 'Prupe.4G246600' => 'ppe', 'Prupe.4G247100' => 'ppe', 'Prupe.6G009600' => 'ppe', 'Prupe.6G009700' => 'ppe', 'Prupe.6G015500' => 'ppe', 'Prupe.6G015600' => 'ppe', 'Prupe.6G116800' => 'ppe', 'Prupe.8G027500' => 'ppe', 'Prupe.I002800' => 'ppe', 'Prupe.I002900' => 'ppe', 'Psat1g125280' => 'psa', 'RcHm_v2.0_Chr1g0319001' => 'rch', 'RcHm_v2.0_Chr1g0324181' => 'rch', 'RcHm_v2.0_Chr1g0324191' => 'rch', 'RcHm_v2.0_Chr1g0324201' => 'rch', 'RcHm_v2.0_Chr1g0325621' => 'rch', 'RcHm_v2.0_Chr1g0325631' => 'rch', 'RcHm_v2.0_Chr1g0337581' => 'rch', 'RcHm_v2.0_Chr1g0356371' => 'rch', 'RcHm_v2.0_Chr1g0382031' => 'rch', 'RcHm_v2.0_Chr2g0141321' => 'rch', 'RcHm_v2.0_Chr2g0149181' => 'rch', 'RcHm_v2.0_Chr2g0149201' => 'rch', 'RcHm_v2.0_Chr3g0460481' => 'rch', 'RcHm_v2.0_Chr3g0460851' => 'rch', 'RcHm_v2.0_Chr4g0390631' => 'rch', 'RcHm_v2.0_Chr4g0401291' => 'rch', 'RcHm_v2.0_Chr4g0401451' => 'rch', 'RcHm_v2.0_Chr4g0401571' => 'rch', 'RcHm_v2.0_Chr4g0401581' => 'rch', 'RcHm_v2.0_Chr5g0048661' => 'rch', 'RcHm_v2.0_Chr5g0061041' => 'rch', 'RcHm_v2.0_Chr5g0070971' => 'rch', 'RcHm_v2.0_Chr5g0070981' => 'rch', 'RcHm_v2.0_Chr5g0071011' => 'rch', 'RcHm_v2.0_Chr5g0071031' => 'rch', 'RcHm_v2.0_Chr5g0071041' => 'rch', 'RcHm_v2.0_Chr5g0071071' => 'rch', 'RcHm_v2.0_Chr5g0071241' => 'rch', 'RcHm_v2.0_Chr5g0073001' => 'rch', 'RcHm_v2.0_Chr5g0080401' => 'rch', 'RcHm_v2.0_Chr5g0080411' => 'rch', 'RcHm_v2.0_Chr5g0080431' => 'rch', 'RcHm_v2.0_Chr5g0081581' => 'rch', 'RcHm_v2.0_Chr5g0081611' => 'rch', 'RcHm_v2.0_Chr5g0081621' => 'rch', 'RcHm_v2.0_Chr5g0081631' => 'rch', 'RcHm_v2.0_Chr5g0081651' => 'rch', 'RcHm_v2.0_Chr5g0081681' => 'rch', 'RcHm_v2.0_Chr5g0081691' => 'rch', 'RcHm_v2.0_Chr5g0081701' => 'rch', 'RcHm_v2.0_Chr5g0081711' => 'rch', 'RcHm_v2.0_Chr5g0081721' => 'rch', 'RcHm_v2.0_Chr5g0081771' => 'rch', 'RcHm_v2.0_Chr5g0081811' => 'rch', 'RcHm_v2.0_Chr5g0081871' => 'rch', 'RcHm_v2.0_Chr5g0081881' => 'rch', 'RcHm_v2.0_Chr5g0081891' => 'rch', 'RcHm_v2.0_Chr5g0081941' => 'rch', 'RcHm_v2.0_Chr5g0081991' => 'rch', 'RcHm_v2.0_Chr5g0082011' => 'rch', 'RcHm_v2.0_Chr5g0082041' => 'rch', 'RcHm_v2.0_Chr5g0082061' => 'rch', 'RcHm_v2.0_Chr5g0082071' => 'rch', 'RcHm_v2.0_Chr5g0082091' => 'rch', 'RcHm_v2.0_Chr5g0082101' => 'rch', 'RcHm_v2.0_Chr5g0082111' => 'rch', 'RcHm_v2.0_Chr5g0082121' => 'rch', 'RcHm_v2.0_Chr5g0082131' => 'rch', 'RcHm_v2.0_Chr5g0082161' => 'rch', 'RcHm_v2.0_Chr5g0082181' => 'rch', 'RcHm_v2.0_Chr5g0082191' => 'rch', 'RcHm_v2.0_Chr5g0082221' => 'rch', 'RcHm_v2.0_Chr5g0082241' => 'rch', 'RcHm_v2.0_Chr5g0082281' => 'rch', 'RcHm_v2.0_Chr5g0082311' => 'rch', 'RcHm_v2.0_Chr5g0082341' => 'rch', 'RcHm_v2.0_Chr5g0082351' => 'rch', 'RcHm_v2.0_Chr5g0082361' => 'rch', 'RcHm_v2.0_Chr5g0082381' => 'rch', 'RcHm_v2.0_Chr5g0082401' => 'rch', 'RcHm_v2.0_Chr5g0082481' => 'rch', 'RcHm_v2.0_Chr5g0082491' => 'rch', 'RcHm_v2.0_Chr5g0082511' => 'rch', 'RcHm_v2.0_Chr5g0082541' => 'rch', 'RcHm_v2.0_Chr5g0082571' => 'rch', 'RcHm_v2.0_Chr5g0082581' => 'rch', 'RcHm_v2.0_Chr5g0082641' => 'rch', 'RcHm_v2.0_Chr5g0082681' => 'rch', 'RcHm_v2.0_Chr5g0082691' => 'rch', 'RcHm_v2.0_Chr5g0082711' => 'rch', 'RcHm_v2.0_Chr5g0082721' => 'rch', 'RcHm_v2.0_Chr5g0082741' => 'rch', 'RcHm_v2.0_Chr5g0082761' => 'rch', 'RcHm_v2.0_Chr5g0082791' => 'rch', 'RcHm_v2.0_Chr5g0082911' => 'rch', 'RcHm_v2.0_Chr5g0083581' => 'rch', 'RcHm_v2.0_Chr5g0083791' => 'rch', 'RcHm_v2.0_Chr5g0083801' => 'rch', 'RcHm_v2.0_Chr6g0254081' => 'rch', 'RcHm_v2.0_Chr6g0254101' => 'rch', 'RcHm_v2.0_Chr6g0264921' => 'rch', 'RcHm_v2.0_Chr6g0288571' => 'rch', 'RcHm_v2.0_Chr6g0288581' => 'rch', 'RcHm_v2.0_Chr7g0219981' => 'rch', 'SalBow1G5056' => 'sbo', 'SalBow2G2721' => 'sbo', 'SalBow5G3732' => 'sbo', 'SalBow8G0205' => 'sbo', 'Sed0024216' => 'sed', 'SGA_v2.0_scaffold3G01691' => 'sas', 'SGA_v2.0_scaffold3G01708' => 'sas', 'Sp1g15380' => 'spa', 'THA.LOC104798562' => 'tha', 'Thhalv10006928m.g' => 'esa', 'TWI59G1077' => 'twi', 'TWI59G1427' => 'twi', 'VMungo0647G0371' => 'vmu', 'VMungo1127G1468' => 'vmu', 'Zm00001eb011510' => 'zma', 'Zm00001eb100940' => 'zma', 'Zm00001eb207750' => 'zma', 'Zm00001eb424910' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001506', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001506' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001506', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '420', 'num_species' => '46' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001506' ) ), 'genes' => array( 'A07p38470' => 'bna', 'A08p31020' => 'bna', 'Aa31LG7G2050' => 'aar', 'Actinidia16357' => 'ach', 'Ah.08g217430' => 'amhyb', 'Ah.15g094760' => 'amhyb', 'AL1G29490' => 'aly', 'AT1G17240' => 'ath', 'AT1G17250' => 'ath', 'Atru.chr12.1322' => 'acertr', 'Atru.chr12.1324' => 'acertr', 'Atru.chr6.590' => 'acertr', 'Atru.chr8.2121' => 'acertr', 'AUR62001389' => 'cqu', 'AUR62001390' => 'cqu', 'AUR62025605' => 'cqu', 'AUR62025607' => 'cqu', 'AUR62044634' => 'cqu', 'BcaB03g13011' => 'bca', 'BcaB07g34037' => 'bca', 'BcaC05g25653' => 'bca', 'BcaC07g38838' => 'bca', 'BcaC07g41409' => 'bca', 'BcaC07g41431' => 'bca', 'BolC5t30273H' => 'bol', 'BolC8t49404H' => 'bol', 'BolC8t51947H' => 'bol', 'BraA08t35031Z' => 'bra', 'C05p15660' => 'bna', 'C08p17780' => 'bna', 'C08p43980' => 'bna', 'CARHR017820' => 'chi', 'CARHR261670' => 'chi', 'Cc00_g08540' => 'ccan', 'Cc07_g18760' => 'ccan', 'Ciclev10003246m.g' => 'ccl', 'Ciclev10003327m.g' => 'ccl', 'Ciclev10003983m.g' => 'ccl', 'CiPaw.02G055400' => 'cil', 'CiPaw.02G055500' => 'cil', 'CiPaw.02G055600' => 'cil', 'CiPaw.12G005000' => 'cil', 'CiPaw.12G005100' => 'cil', 'CiPaw.12G005300' => 'cil', 'CiPaw.12G005500' => 'cil', 'CiPaw.12G005700' => 'cil', 'CiPaw.13G168900' => 'cil', 'CiPaw.13G169000' => 'cil', 'CiPaw.13G169100' => 'cil', 'CiPaw.13G169200' => 'cil', 'CiPaw.14G126900' => 'cil', 'CiPaw.14G127500' => 'cil', 'CiPaw.14G127900' => 'cil', 'CiPaw.14G128100' => 'cil', 'COL.COLO4_11779' => 'col', 'Dinv36209' => 'din', 'Dinv36211' => 'din', 'EL10Ac7g18247' => 'bvu', 'Eucgr.C04048' => 'egr', 'Eucgr.L00617' => 'egr', 'FAN02G1459' => 'fan', 'FAN02G3970' => 'fan', 'FAN05G4510' => 'fan', 'FAN09G1045' => 'fan', 'FAN11G0089' => 'fan', 'FAN11G0356' => 'fan', 'FAN11G0737' => 'fan', 'FAN11G0797' => 'fan', 'FAN11G0801' => 'fan', 'FAN11G0839' => 'fan', 'FAN11G1318' => 'fan', 'FAN11G1337' => 'fan', 'FAN11G1463' => 'fan', 'FAN11G1557' => 'fan', 'FAN11G1948' => 'fan', 'FAN11G2167' => 'fan', 'FAN11G2215' => 'fan', 'FAN11G2219' => 'fan', 'FAN11G3464' => 'fan', 'FAN14G0819' => 'fan', 'FAN14G3138' => 'fan', 'FAN16G0055' => 'fan', 'FAN16G1850' => 'fan', 'FAN16G3133' => 'fan', 'FAN16G3150' => 'fan', 'FAN16G3500' => 'fan', 'FAN17G1113' => 'fan', 'FAN17G1705' => 'fan', 'FAN18G0990' => 'fan', 'FAN18G1517' => 'fan', 'FAN20G2034' => 'fan', 'FAN21G0338' => 'fan', 'FAN21G0398' => 'fan', 'FAN21G0463' => 'fan', 'FAN21G0758' => 'fan', 'FAN21G0832' => 'fan', 'FAN21G1104' => 'fan', 'FAN21G1410' => 'fan', 'FAN21G2161' => 'fan', 'FAN21G2324' => 'fan', 'FAN21G2334' => 'fan', 'FAN21G2402' => 'fan', 'FAN21G3266' => 'fan', 'FAN21G3398' => 'fan', 'FAN21G3761' => 'fan', 'FAN25G0304' => 'fan', 'FAN25G0712' => 'fan', 'FAN25G0867' => 'fan', 'FAN25G1095' => 'fan', 'FAN25G1606' => 'fan', 'FAN25G2167' => 'fan', 'FAN25G2247' => 'fan', 'FAN25G2420' => 'fan', 'FAN25G2730' => 'fan', 'FAN25G3207' => 'fan', 'FAN25G3351' => 'fan', 'FAN25G3783' => 'fan', 'FvH4_3g20130' => 'fve', 'FvH4_3g38570' => 'fve', 'FvH4_3g39440' => 'fve', 'FvH4_3g39490' => 'fve', 'FvH4_3g44120' => 'fve', 'FvH4_3g44870' => 'fve', 'FvH4_3g44871' => 'fve', 'FvH4_3g44872' => 'fve', 'FvH4_3g44880' => 'fve', 'FvH4_3g44920' => 'fve', 'FvH4_3g44930' => 'fve', 'FvH4_3g44961' => 'fve', 'FvH4_3g45010' => 'fve', 'FvH4_3g45260' => 'fve', 'FvH4_3g45620' => 'fve', 'FvH4_5g12510' => 'fve', 'FvH4_6g36780' => 'fve', 'FvH4_6g36790' => 'fve', 'FvH4_6g36810' => 'fve', 'Gohir.D05G201880' => 'ghi', 'Gorai.005G078900' => 'gra', 'Gorai.009G207700' => 'gra', 'HanXRQChr08g0231561' => 'han', 'HanXRQChr09g0238721' => 'han', 'HanXRQChr09g0238741' => 'han', 'HanXRQChr09g0238751' => 'han', 'HanXRQChr09g0238781' => 'han', 'HanXRQChr09g0238791' => 'han', 'HanXRQChr09g0265391' => 'han', 'HanXRQChr16g0497971' => 'han', 'HanXRQChr16g0497981' => 'han', 'Haze_14215' => 'cav', 'Haze_20041' => 'cav', 'Haze_23027' => 'cav', 'Haze_23090' => 'cav', 'Haze_23091' => 'cav', 'Haze_23094' => 'cav', 'Haze_23095' => 'cav', 'Haze_23096' => 'cav', 'Haze_23097' => 'cav', 'Haze_23098' => 'cav', 'Haze_23099' => 'cav', 'Haze_23100' => 'cav', 'Haze_23683' => 'cav', 'Haze_23684' => 'cav', 'Hma1.2p1_1043F.1_g251220' => 'hma', 'Lj9A144T48' => 'lonja', 'Lj9A144T49' => 'lonja', 'Lj9A144T50' => 'lonja', 'Lj9C144T10' => 'lonja', 'Lj9C144T11' => 'lonja', 'Lj9C144T19' => 'lonja', 'Lj9C144T5' => 'lonja', 'Lj9C144T6' => 'lonja', 'Lj9C144T7' => 'lonja', 'Manes.07G018000' => 'mes', 'MD00G1077300' => 'mdo', 'MD00G1077400' => 'mdo', 'MD00G1077600' => 'mdo', 'MD00G1077700' => 'mdo', 'MD00G1077800' => 'mdo', 'MD00G1082100' => 'mdo', 'MD00G1082200' => 'mdo', 'MD00G1082300' => 'mdo', 'MD00G1082400' => 'mdo', 'MD00G1082500' => 'mdo', 'MD00G1082600' => 'mdo', 'MD00G1082900' => 'mdo', 'MD02G1111300' => 'mdo', 'MD03G1017100' => 'mdo', 'MD03G1017300' => 'mdo', 'MD03G1017400' => 'mdo', 'MD03G1017700' => 'mdo', 'MD03G1017800' => 'mdo', 'MD03G1018000' => 'mdo', 'MD03G1018100' => 'mdo', 'MD03G1018300' => 'mdo', 'MD03G1019300' => 'mdo', 'MD03G1022100' => 'mdo', 'MD03G1131400' => 'mdo', 'MD03G1178700' => 'mdo', 'MD03G1192900' => 'mdo', 'MD03G1224400' => 'mdo', 'MD03G1227100' => 'mdo', 'MD03G1240600' => 'mdo', 'MD03G1243900' => 'mdo', 'MD03G1244000' => 'mdo', 'MD03G1244200' => 'mdo', 'MD04G1167200' => 'mdo', 'MD05G1078800' => 'mdo', 'MD05G1342800' => 'mdo', 'MD06G1055100' => 'mdo', 'MD09G1166700' => 'mdo', 'MD09G1166800' => 'mdo', 'MD09G1166900' => 'mdo', 'MD10G1316900' => 'mdo', 'MD10G1317500' => 'mdo', 'MD11G1017800' => 'mdo', 'MD11G1017900' => 'mdo', 'MD11G1018100' => 'mdo', 'MD11G1018300' => 'mdo', 'MD11G1018400' => 'mdo', 'MD11G1018500' => 'mdo', 'MD11G1018800' => 'mdo', 'MD11G1018900' => 'mdo', 'MD11G1019000' => 'mdo', 'MD11G1247900' => 'mdo', 'MD11G1248200' => 'mdo', 'MD11G1248600' => 'mdo', 'MD11G1248700' => 'mdo', 'MD11G1249200' => 'mdo', 'MD11G1249300' => 'mdo', 'MD11G1249400' => 'mdo', 'MD13G1259100' => 'mdo', 'MD14G1097700' => 'mdo', 'Migut.N00536' => 'egut', 'MSTRG.12052' => 'ama', 'MSTRG.12803' => 'ama', 'MSTRG.18036' => 'ama', 'MSTRG.25554' => 'ama', 'Oeu019520.1' => 'oeu', 'Oeu019522.1' => 'oeu', 'Oeu019524.1' => 'oeu', 'Oeu019525.1' => 'oeu', 'Oeu019526.1' => 'oeu', 'Oeu019527.1' => 'oeu', 'Oeu021012.1' => 'oeu', 'Oeu023970.1' => 'oeu', 'Oeu023971.1' => 'oeu', 'Oeu060899.2' => 'oeu', 'Oeu060903.1' => 'oeu', 'Oeu060905.1' => 'oeu', 'Os02g0155400' => 'osa', 'Os02g0155600' => 'osa', 'Os02g0155700' => 'osa', 'Os02g0155900' => 'osa', 'Os02g0156200' => 'osa', 'Os02g0156400' => 'osa', 'Os02g0156600' => 'osa', 'Os02g0156633' => 'osa', 'Os02g0156800' => 'osa', 'Os02g0157000' => 'osa', 'Os02g0157100' => 'osa', 'Os02g0157200' => 'osa', 'Os02g0157400' => 'osa', 'Os02g0515125' => 'osa', 'Peaxi162Scf00652g00043' => 'pax', 'Prupe.2G076700' => 'ppe', 'Prupe.2G098300' => 'ppe', 'Prupe.2G098400' => 'ppe', 'Prupe.2G098500' => 'ppe', 'Prupe.2G104600' => 'ppe', 'Prupe.3G024400' => 'ppe', 'Prupe.3G024600' => 'ppe', 'Prupe.3G024700' => 'ppe', 'Prupe.4G161800' => 'ppe', 'Prupe.4G162000' => 'ppe', 'Prupe.4G162500' => 'ppe', 'Prupe.4G162600' => 'ppe', 'Prupe.4G162700' => 'ppe', 'Prupe.4G162800' => 'ppe', 'Prupe.4G162900' => 'ppe', 'Prupe.4G163000' => 'ppe', 'Prupe.4G163100' => 'ppe', 'Prupe.4G163200' => 'ppe', 'Prupe.4G163400' => 'ppe', 'Prupe.4G163500' => 'ppe', 'Prupe.4G163700' => 'ppe', 'Prupe.4G163800' => 'ppe', 'Prupe.4G164200' => 'ppe', 'Prupe.4G168500' => 'ppe', 'Prupe.4G168700' => 'ppe', 'Prupe.4G168800' => 'ppe', 'Prupe.4G169200' => 'ppe', 'Prupe.4G169300' => 'ppe', 'Prupe.4G169500' => 'ppe', 'Prupe.4G169600' => 'ppe', 'Prupe.4G169700' => 'ppe', 'Prupe.4G169800' => 'ppe', 'Prupe.4G169900' => 'ppe', 'Prupe.4G246600' => 'ppe', 'Prupe.4G247100' => 'ppe', 'Prupe.6G009600' => 'ppe', 'Prupe.6G009700' => 'ppe', 'Prupe.6G015500' => 'ppe', 'Prupe.6G015600' => 'ppe', 'Prupe.6G116800' => 'ppe', 'Prupe.8G027500' => 'ppe', 'Prupe.I002800' => 'ppe', 'Prupe.I002900' => 'ppe', 'Psat1g125280' => 'psa', 'RcHm_v2.0_Chr1g0319001' => 'rch', 'RcHm_v2.0_Chr1g0324181' => 'rch', 'RcHm_v2.0_Chr1g0324191' => 'rch', 'RcHm_v2.0_Chr1g0324201' => 'rch', 'RcHm_v2.0_Chr1g0325621' => 'rch', 'RcHm_v2.0_Chr1g0325631' => 'rch', 'RcHm_v2.0_Chr1g0337581' => 'rch', 'RcHm_v2.0_Chr1g0356371' => 'rch', 'RcHm_v2.0_Chr1g0382031' => 'rch', 'RcHm_v2.0_Chr2g0141321' => 'rch', 'RcHm_v2.0_Chr2g0149181' => 'rch', 'RcHm_v2.0_Chr2g0149201' => 'rch', 'RcHm_v2.0_Chr3g0460481' => 'rch', 'RcHm_v2.0_Chr3g0460851' => 'rch', 'RcHm_v2.0_Chr4g0390631' => 'rch', 'RcHm_v2.0_Chr4g0401291' => 'rch', 'RcHm_v2.0_Chr4g0401451' => 'rch', 'RcHm_v2.0_Chr4g0401571' => 'rch', 'RcHm_v2.0_Chr4g0401581' => 'rch', 'RcHm_v2.0_Chr5g0048661' => 'rch', 'RcHm_v2.0_Chr5g0061041' => 'rch', 'RcHm_v2.0_Chr5g0070971' => 'rch', 'RcHm_v2.0_Chr5g0070981' => 'rch', 'RcHm_v2.0_Chr5g0071011' => 'rch', 'RcHm_v2.0_Chr5g0071031' => 'rch', 'RcHm_v2.0_Chr5g0071041' => 'rch', 'RcHm_v2.0_Chr5g0071071' => 'rch', 'RcHm_v2.0_Chr5g0071241' => 'rch', 'RcHm_v2.0_Chr5g0073001' => 'rch', 'RcHm_v2.0_Chr5g0080401' => 'rch', 'RcHm_v2.0_Chr5g0080411' => 'rch', 'RcHm_v2.0_Chr5g0080431' => 'rch', 'RcHm_v2.0_Chr5g0081581' => 'rch', 'RcHm_v2.0_Chr5g0081611' => 'rch', 'RcHm_v2.0_Chr5g0081621' => 'rch', 'RcHm_v2.0_Chr5g0081631' => 'rch', 'RcHm_v2.0_Chr5g0081651' => 'rch', 'RcHm_v2.0_Chr5g0081681' => 'rch', 'RcHm_v2.0_Chr5g0081691' => 'rch', 'RcHm_v2.0_Chr5g0081701' => 'rch', 'RcHm_v2.0_Chr5g0081711' => 'rch', 'RcHm_v2.0_Chr5g0081721' => 'rch', 'RcHm_v2.0_Chr5g0081771' => 'rch', 'RcHm_v2.0_Chr5g0081811' => 'rch', 'RcHm_v2.0_Chr5g0081871' => 'rch', 'RcHm_v2.0_Chr5g0081881' => 'rch', 'RcHm_v2.0_Chr5g0081891' => 'rch', 'RcHm_v2.0_Chr5g0081941' => 'rch', 'RcHm_v2.0_Chr5g0081991' => 'rch', 'RcHm_v2.0_Chr5g0082011' => 'rch', 'RcHm_v2.0_Chr5g0082041' => 'rch', 'RcHm_v2.0_Chr5g0082061' => 'rch', 'RcHm_v2.0_Chr5g0082071' => 'rch', 'RcHm_v2.0_Chr5g0082091' => 'rch', 'RcHm_v2.0_Chr5g0082101' => 'rch', 'RcHm_v2.0_Chr5g0082111' => 'rch', 'RcHm_v2.0_Chr5g0082121' => 'rch', 'RcHm_v2.0_Chr5g0082131' => 'rch', 'RcHm_v2.0_Chr5g0082161' => 'rch', 'RcHm_v2.0_Chr5g0082181' => 'rch', 'RcHm_v2.0_Chr5g0082191' => 'rch', 'RcHm_v2.0_Chr5g0082221' => 'rch', 'RcHm_v2.0_Chr5g0082241' => 'rch', 'RcHm_v2.0_Chr5g0082281' => 'rch', 'RcHm_v2.0_Chr5g0082311' => 'rch', 'RcHm_v2.0_Chr5g0082341' => 'rch', 'RcHm_v2.0_Chr5g0082351' => 'rch', 'RcHm_v2.0_Chr5g0082361' => 'rch', 'RcHm_v2.0_Chr5g0082381' => 'rch', 'RcHm_v2.0_Chr5g0082401' => 'rch', 'RcHm_v2.0_Chr5g0082481' => 'rch', 'RcHm_v2.0_Chr5g0082491' => 'rch', 'RcHm_v2.0_Chr5g0082511' => 'rch', 'RcHm_v2.0_Chr5g0082541' => 'rch', 'RcHm_v2.0_Chr5g0082571' => 'rch', 'RcHm_v2.0_Chr5g0082581' => 'rch', 'RcHm_v2.0_Chr5g0082641' => 'rch', 'RcHm_v2.0_Chr5g0082681' => 'rch', 'RcHm_v2.0_Chr5g0082691' => 'rch', 'RcHm_v2.0_Chr5g0082711' => 'rch', 'RcHm_v2.0_Chr5g0082721' => 'rch', 'RcHm_v2.0_Chr5g0082741' => 'rch', 'RcHm_v2.0_Chr5g0082761' => 'rch', 'RcHm_v2.0_Chr5g0082791' => 'rch', 'RcHm_v2.0_Chr5g0082911' => 'rch', 'RcHm_v2.0_Chr5g0083581' => 'rch', 'RcHm_v2.0_Chr5g0083791' => 'rch', 'RcHm_v2.0_Chr5g0083801' => 'rch', 'RcHm_v2.0_Chr6g0254081' => 'rch', 'RcHm_v2.0_Chr6g0254101' => 'rch', 'RcHm_v2.0_Chr6g0264921' => 'rch', 'RcHm_v2.0_Chr6g0288571' => 'rch', 'RcHm_v2.0_Chr6g0288581' => 'rch', 'RcHm_v2.0_Chr7g0219981' => 'rch', 'SalBow1G5056' => 'sbo', 'SalBow2G2721' => 'sbo', 'SalBow5G3732' => 'sbo', 'SalBow8G0205' => 'sbo', 'Sed0024216' => 'sed', 'SGA_v2.0_scaffold3G01691' => 'sas', 'SGA_v2.0_scaffold3G01708' => 'sas', 'Sp1g15380' => 'spa', 'THA.LOC104798562' => 'tha', 'Thhalv10006928m.g' => 'esa', 'TWI59G1077' => 'twi', 'TWI59G1427' => 'twi', 'VMungo0647G0371' => 'vmu', 'VMungo1127G1468' => 'vmu', 'Zm00001eb011510' => 'zma', 'Zm00001eb100940' => 'zma', 'Zm00001eb207750' => 'zma', 'Zm00001eb424910' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001506' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001506' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001506' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001506' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001506', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '420', 'num_species' => '46' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A07p38470' => 'bna', 'A08p31020' => 'bna', 'Aa31LG7G2050' => 'aar', 'Actinidia16357' => 'ach', 'Ah.08g217430' => 'amhyb', 'Ah.15g094760' => 'amhyb', 'AL1G29490' => 'aly', 'AT1G17240' => 'ath', 'AT1G17250' => 'ath', 'Atru.chr12.1322' => 'acertr', 'Atru.chr12.1324' => 'acertr', 'Atru.chr6.590' => 'acertr', 'Atru.chr8.2121' => 'acertr', 'AUR62001389' => 'cqu', 'AUR62001390' => 'cqu', 'AUR62025605' => 'cqu', 'AUR62025607' => 'cqu', 'AUR62044634' => 'cqu', 'BcaB03g13011' => 'bca', 'BcaB07g34037' => 'bca', 'BcaC05g25653' => 'bca', 'BcaC07g38838' => 'bca', 'BcaC07g41409' => 'bca', 'BcaC07g41431' => 'bca', 'BolC5t30273H' => 'bol', 'BolC8t49404H' => 'bol', 'BolC8t51947H' => 'bol', 'BraA08t35031Z' => 'bra', 'C05p15660' => 'bna', 'C08p17780' => 'bna', 'C08p43980' => 'bna', 'CARHR017820' => 'chi', 'CARHR261670' => 'chi', 'Cc00_g08540' => 'ccan', 'Cc07_g18760' => 'ccan', 'Ciclev10003246m.g' => 'ccl', 'Ciclev10003327m.g' => 'ccl', 'Ciclev10003983m.g' => 'ccl', 'CiPaw.02G055400' => 'cil', 'CiPaw.02G055500' => 'cil', 'CiPaw.02G055600' => 'cil', 'CiPaw.12G005000' => 'cil', 'CiPaw.12G005100' => 'cil', 'CiPaw.12G005300' => 'cil', 'CiPaw.12G005500' => 'cil', 'CiPaw.12G005700' => 'cil', 'CiPaw.13G168900' => 'cil', 'CiPaw.13G169000' => 'cil', 'CiPaw.13G169100' => 'cil', 'CiPaw.13G169200' => 'cil', 'CiPaw.14G126900' => 'cil', 'CiPaw.14G127500' => 'cil', 'CiPaw.14G127900' => 'cil', 'CiPaw.14G128100' => 'cil', 'COL.COLO4_11779' => 'col', 'Dinv36209' => 'din', 'Dinv36211' => 'din', 'EL10Ac7g18247' => 'bvu', 'Eucgr.C04048' => 'egr', 'Eucgr.L00617' => 'egr', 'FAN02G1459' => 'fan', 'FAN02G3970' => 'fan', 'FAN05G4510' => 'fan', 'FAN09G1045' => 'fan', 'FAN11G0089' => 'fan', 'FAN11G0356' => 'fan', 'FAN11G0737' => 'fan', 'FAN11G0797' => 'fan', 'FAN11G0801' => 'fan', 'FAN11G0839' => 'fan', 'FAN11G1318' => 'fan', 'FAN11G1337' => 'fan', 'FAN11G1463' => 'fan', 'FAN11G1557' => 'fan', 'FAN11G1948' => 'fan', 'FAN11G2167' => 'fan', 'FAN11G2215' => 'fan', 'FAN11G2219' => 'fan', 'FAN11G3464' => 'fan', 'FAN14G0819' => 'fan', 'FAN14G3138' => 'fan', 'FAN16G0055' => 'fan', 'FAN16G1850' => 'fan', 'FAN16G3133' => 'fan', 'FAN16G3150' => 'fan', 'FAN16G3500' => 'fan', 'FAN17G1113' => 'fan', 'FAN17G1705' => 'fan', 'FAN18G0990' => 'fan', 'FAN18G1517' => 'fan', 'FAN20G2034' => 'fan', 'FAN21G0338' => 'fan', 'FAN21G0398' => 'fan', 'FAN21G0463' => 'fan', 'FAN21G0758' => 'fan', 'FAN21G0832' => 'fan', 'FAN21G1104' => 'fan', 'FAN21G1410' => 'fan', 'FAN21G2161' => 'fan', 'FAN21G2324' => 'fan', 'FAN21G2334' => 'fan', 'FAN21G2402' => 'fan', 'FAN21G3266' => 'fan', 'FAN21G3398' => 'fan', 'FAN21G3761' => 'fan', 'FAN25G0304' => 'fan', 'FAN25G0712' => 'fan', 'FAN25G0867' => 'fan', 'FAN25G1095' => 'fan', 'FAN25G1606' => 'fan', 'FAN25G2167' => 'fan', 'FAN25G2247' => 'fan', 'FAN25G2420' => 'fan', 'FAN25G2730' => 'fan', 'FAN25G3207' => 'fan', 'FAN25G3351' => 'fan', 'FAN25G3783' => 'fan', 'FvH4_3g20130' => 'fve', 'FvH4_3g38570' => 'fve', 'FvH4_3g39440' => 'fve', 'FvH4_3g39490' => 'fve', 'FvH4_3g44120' => 'fve', 'FvH4_3g44870' => 'fve', 'FvH4_3g44871' => 'fve', 'FvH4_3g44872' => 'fve', 'FvH4_3g44880' => 'fve', 'FvH4_3g44920' => 'fve', 'FvH4_3g44930' => 'fve', 'FvH4_3g44961' => 'fve', 'FvH4_3g45010' => 'fve', 'FvH4_3g45260' => 'fve', 'FvH4_3g45620' => 'fve', 'FvH4_5g12510' => 'fve', 'FvH4_6g36780' => 'fve', 'FvH4_6g36790' => 'fve', 'FvH4_6g36810' => 'fve', 'Gohir.D05G201880' => 'ghi', 'Gorai.005G078900' => 'gra', 'Gorai.009G207700' => 'gra', 'HanXRQChr08g0231561' => 'han', 'HanXRQChr09g0238721' => 'han', 'HanXRQChr09g0238741' => 'han', 'HanXRQChr09g0238751' => 'han', 'HanXRQChr09g0238781' => 'han', 'HanXRQChr09g0238791' => 'han', 'HanXRQChr09g0265391' => 'han', 'HanXRQChr16g0497971' => 'han', 'HanXRQChr16g0497981' => 'han', 'Haze_14215' => 'cav', 'Haze_20041' => 'cav', 'Haze_23027' => 'cav', 'Haze_23090' => 'cav', 'Haze_23091' => 'cav', 'Haze_23094' => 'cav', 'Haze_23095' => 'cav', 'Haze_23096' => 'cav', 'Haze_23097' => 'cav', 'Haze_23098' => 'cav', 'Haze_23099' => 'cav', 'Haze_23100' => 'cav', 'Haze_23683' => 'cav', 'Haze_23684' => 'cav', 'Hma1.2p1_1043F.1_g251220' => 'hma', 'Lj9A144T48' => 'lonja', 'Lj9A144T49' => 'lonja', 'Lj9A144T50' => 'lonja', 'Lj9C144T10' => 'lonja', 'Lj9C144T11' => 'lonja', 'Lj9C144T19' => 'lonja', 'Lj9C144T5' => 'lonja', 'Lj9C144T6' => 'lonja', 'Lj9C144T7' => 'lonja', 'Manes.07G018000' => 'mes', 'MD00G1077300' => 'mdo', 'MD00G1077400' => 'mdo', 'MD00G1077600' => 'mdo', 'MD00G1077700' => 'mdo', 'MD00G1077800' => 'mdo', 'MD00G1082100' => 'mdo', 'MD00G1082200' => 'mdo', 'MD00G1082300' => 'mdo', 'MD00G1082400' => 'mdo', 'MD00G1082500' => 'mdo', 'MD00G1082600' => 'mdo', 'MD00G1082900' => 'mdo', 'MD02G1111300' => 'mdo', 'MD03G1017100' => 'mdo', 'MD03G1017300' => 'mdo', 'MD03G1017400' => 'mdo', 'MD03G1017700' => 'mdo', 'MD03G1017800' => 'mdo', 'MD03G1018000' => 'mdo', 'MD03G1018100' => 'mdo', 'MD03G1018300' => 'mdo', 'MD03G1019300' => 'mdo', 'MD03G1022100' => 'mdo', 'MD03G1131400' => 'mdo', 'MD03G1178700' => 'mdo', 'MD03G1192900' => 'mdo', 'MD03G1224400' => 'mdo', 'MD03G1227100' => 'mdo', 'MD03G1240600' => 'mdo', 'MD03G1243900' => 'mdo', 'MD03G1244000' => 'mdo', 'MD03G1244200' => 'mdo', 'MD04G1167200' => 'mdo', 'MD05G1078800' => 'mdo', 'MD05G1342800' => 'mdo', 'MD06G1055100' => 'mdo', 'MD09G1166700' => 'mdo', 'MD09G1166800' => 'mdo', 'MD09G1166900' => 'mdo', 'MD10G1316900' => 'mdo', 'MD10G1317500' => 'mdo', 'MD11G1017800' => 'mdo', 'MD11G1017900' => 'mdo', 'MD11G1018100' => 'mdo', 'MD11G1018300' => 'mdo', 'MD11G1018400' => 'mdo', 'MD11G1018500' => 'mdo', 'MD11G1018800' => 'mdo', 'MD11G1018900' => 'mdo', 'MD11G1019000' => 'mdo', 'MD11G1247900' => 'mdo', 'MD11G1248200' => 'mdo', 'MD11G1248600' => 'mdo', 'MD11G1248700' => 'mdo', 'MD11G1249200' => 'mdo', 'MD11G1249300' => 'mdo', 'MD11G1249400' => 'mdo', 'MD13G1259100' => 'mdo', 'MD14G1097700' => 'mdo', 'Migut.N00536' => 'egut', 'MSTRG.12052' => 'ama', 'MSTRG.12803' => 'ama', 'MSTRG.18036' => 'ama', 'MSTRG.25554' => 'ama', 'Oeu019520.1' => 'oeu', 'Oeu019522.1' => 'oeu', 'Oeu019524.1' => 'oeu', 'Oeu019525.1' => 'oeu', 'Oeu019526.1' => 'oeu', 'Oeu019527.1' => 'oeu', 'Oeu021012.1' => 'oeu', 'Oeu023970.1' => 'oeu', 'Oeu023971.1' => 'oeu', 'Oeu060899.2' => 'oeu', 'Oeu060903.1' => 'oeu', 'Oeu060905.1' => 'oeu', 'Os02g0155400' => 'osa', 'Os02g0155600' => 'osa', 'Os02g0155700' => 'osa', 'Os02g0155900' => 'osa', 'Os02g0156200' => 'osa', 'Os02g0156400' => 'osa', 'Os02g0156600' => 'osa', 'Os02g0156633' => 'osa', 'Os02g0156800' => 'osa', 'Os02g0157000' => 'osa', 'Os02g0157100' => 'osa', 'Os02g0157200' => 'osa', 'Os02g0157400' => 'osa', 'Os02g0515125' => 'osa', 'Peaxi162Scf00652g00043' => 'pax', 'Prupe.2G076700' => 'ppe', 'Prupe.2G098300' => 'ppe', 'Prupe.2G098400' => 'ppe', 'Prupe.2G098500' => 'ppe', 'Prupe.2G104600' => 'ppe', 'Prupe.3G024400' => 'ppe', 'Prupe.3G024600' => 'ppe', 'Prupe.3G024700' => 'ppe', 'Prupe.4G161800' => 'ppe', 'Prupe.4G162000' => 'ppe', 'Prupe.4G162500' => 'ppe', 'Prupe.4G162600' => 'ppe', 'Prupe.4G162700' => 'ppe', 'Prupe.4G162800' => 'ppe', 'Prupe.4G162900' => 'ppe', 'Prupe.4G163000' => 'ppe', 'Prupe.4G163100' => 'ppe', 'Prupe.4G163200' => 'ppe', 'Prupe.4G163400' => 'ppe', 'Prupe.4G163500' => 'ppe', 'Prupe.4G163700' => 'ppe', 'Prupe.4G163800' => 'ppe', 'Prupe.4G164200' => 'ppe', 'Prupe.4G168500' => 'ppe', 'Prupe.4G168700' => 'ppe', 'Prupe.4G168800' => 'ppe', 'Prupe.4G169200' => 'ppe', 'Prupe.4G169300' => 'ppe', 'Prupe.4G169500' => 'ppe', 'Prupe.4G169600' => 'ppe', 'Prupe.4G169700' => 'ppe', 'Prupe.4G169800' => 'ppe', 'Prupe.4G169900' => 'ppe', 'Prupe.4G246600' => 'ppe', 'Prupe.4G247100' => 'ppe', 'Prupe.6G009600' => 'ppe', 'Prupe.6G009700' => 'ppe', 'Prupe.6G015500' => 'ppe', 'Prupe.6G015600' => 'ppe', 'Prupe.6G116800' => 'ppe', 'Prupe.8G027500' => 'ppe', 'Prupe.I002800' => 'ppe', 'Prupe.I002900' => 'ppe', 'Psat1g125280' => 'psa', 'RcHm_v2.0_Chr1g0319001' => 'rch', 'RcHm_v2.0_Chr1g0324181' => 'rch', 'RcHm_v2.0_Chr1g0324191' => 'rch', 'RcHm_v2.0_Chr1g0324201' => 'rch', 'RcHm_v2.0_Chr1g0325621' => 'rch', 'RcHm_v2.0_Chr1g0325631' => 'rch', 'RcHm_v2.0_Chr1g0337581' => 'rch', 'RcHm_v2.0_Chr1g0356371' => 'rch', 'RcHm_v2.0_Chr1g0382031' => 'rch', 'RcHm_v2.0_Chr2g0141321' => 'rch', 'RcHm_v2.0_Chr2g0149181' => 'rch', 'RcHm_v2.0_Chr2g0149201' => 'rch', 'RcHm_v2.0_Chr3g0460481' => 'rch', 'RcHm_v2.0_Chr3g0460851' => 'rch', 'RcHm_v2.0_Chr4g0390631' => 'rch', 'RcHm_v2.0_Chr4g0401291' => 'rch', 'RcHm_v2.0_Chr4g0401451' => 'rch', 'RcHm_v2.0_Chr4g0401571' => 'rch', 'RcHm_v2.0_Chr4g0401581' => 'rch', 'RcHm_v2.0_Chr5g0048661' => 'rch', 'RcHm_v2.0_Chr5g0061041' => 'rch', 'RcHm_v2.0_Chr5g0070971' => 'rch', 'RcHm_v2.0_Chr5g0070981' => 'rch', 'RcHm_v2.0_Chr5g0071011' => 'rch', 'RcHm_v2.0_Chr5g0071031' => 'rch', 'RcHm_v2.0_Chr5g0071041' => 'rch', 'RcHm_v2.0_Chr5g0071071' => 'rch', 'RcHm_v2.0_Chr5g0071241' => 'rch', 'RcHm_v2.0_Chr5g0073001' => 'rch', 'RcHm_v2.0_Chr5g0080401' => 'rch', 'RcHm_v2.0_Chr5g0080411' => 'rch', 'RcHm_v2.0_Chr5g0080431' => 'rch', 'RcHm_v2.0_Chr5g0081581' => 'rch', 'RcHm_v2.0_Chr5g0081611' => 'rch', 'RcHm_v2.0_Chr5g0081621' => 'rch', 'RcHm_v2.0_Chr5g0081631' => 'rch', 'RcHm_v2.0_Chr5g0081651' => 'rch', 'RcHm_v2.0_Chr5g0081681' => 'rch', 'RcHm_v2.0_Chr5g0081691' => 'rch', 'RcHm_v2.0_Chr5g0081701' => 'rch', 'RcHm_v2.0_Chr5g0081711' => 'rch', 'RcHm_v2.0_Chr5g0081721' => 'rch', 'RcHm_v2.0_Chr5g0081771' => 'rch', 'RcHm_v2.0_Chr5g0081811' => 'rch', 'RcHm_v2.0_Chr5g0081871' => 'rch', 'RcHm_v2.0_Chr5g0081881' => 'rch', 'RcHm_v2.0_Chr5g0081891' => 'rch', 'RcHm_v2.0_Chr5g0081941' => 'rch', 'RcHm_v2.0_Chr5g0081991' => 'rch', 'RcHm_v2.0_Chr5g0082011' => 'rch', 'RcHm_v2.0_Chr5g0082041' => 'rch', 'RcHm_v2.0_Chr5g0082061' => 'rch', 'RcHm_v2.0_Chr5g0082071' => 'rch', 'RcHm_v2.0_Chr5g0082091' => 'rch', 'RcHm_v2.0_Chr5g0082101' => 'rch', 'RcHm_v2.0_Chr5g0082111' => 'rch', 'RcHm_v2.0_Chr5g0082121' => 'rch', 'RcHm_v2.0_Chr5g0082131' => 'rch', 'RcHm_v2.0_Chr5g0082161' => 'rch', 'RcHm_v2.0_Chr5g0082181' => 'rch', 'RcHm_v2.0_Chr5g0082191' => 'rch', 'RcHm_v2.0_Chr5g0082221' => 'rch', 'RcHm_v2.0_Chr5g0082241' => 'rch', 'RcHm_v2.0_Chr5g0082281' => 'rch', 'RcHm_v2.0_Chr5g0082311' => 'rch', 'RcHm_v2.0_Chr5g0082341' => 'rch', 'RcHm_v2.0_Chr5g0082351' => 'rch', 'RcHm_v2.0_Chr5g0082361' => 'rch', 'RcHm_v2.0_Chr5g0082381' => 'rch', 'RcHm_v2.0_Chr5g0082401' => 'rch', 'RcHm_v2.0_Chr5g0082481' => 'rch', 'RcHm_v2.0_Chr5g0082491' => 'rch', 'RcHm_v2.0_Chr5g0082511' => 'rch', 'RcHm_v2.0_Chr5g0082541' => 'rch', 'RcHm_v2.0_Chr5g0082571' => 'rch', 'RcHm_v2.0_Chr5g0082581' => 'rch', 'RcHm_v2.0_Chr5g0082641' => 'rch', 'RcHm_v2.0_Chr5g0082681' => 'rch', 'RcHm_v2.0_Chr5g0082691' => 'rch', 'RcHm_v2.0_Chr5g0082711' => 'rch', 'RcHm_v2.0_Chr5g0082721' => 'rch', 'RcHm_v2.0_Chr5g0082741' => 'rch', 'RcHm_v2.0_Chr5g0082761' => 'rch', 'RcHm_v2.0_Chr5g0082791' => 'rch', 'RcHm_v2.0_Chr5g0082911' => 'rch', 'RcHm_v2.0_Chr5g0083581' => 'rch', 'RcHm_v2.0_Chr5g0083791' => 'rch', 'RcHm_v2.0_Chr5g0083801' => 'rch', 'RcHm_v2.0_Chr6g0254081' => 'rch', 'RcHm_v2.0_Chr6g0254101' => 'rch', 'RcHm_v2.0_Chr6g0264921' => 'rch', 'RcHm_v2.0_Chr6g0288571' => 'rch', 'RcHm_v2.0_Chr6g0288581' => 'rch', 'RcHm_v2.0_Chr7g0219981' => 'rch', 'SalBow1G5056' => 'sbo', 'SalBow2G2721' => 'sbo', 'SalBow5G3732' => 'sbo', 'SalBow8G0205' => 'sbo', 'Sed0024216' => 'sed', 'SGA_v2.0_scaffold3G01691' => 'sas', 'SGA_v2.0_scaffold3G01708' => 'sas', 'Sp1g15380' => 'spa', 'THA.LOC104798562' => 'tha', 'Thhalv10006928m.g' => 'esa', 'TWI59G1077' => 'twi', 'TWI59G1427' => 'twi', 'VMungo0647G0371' => 'vmu', 'VMungo1127G1468' => 'vmu', 'Zm00001eb011510' => 'zma', 'Zm00001eb100940' => 'zma', 'Zm00001eb207750' => 'zma', 'Zm00001eb424910' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001506', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001506' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001506', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '420', 'num_species' => '46' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001506' ) ), 'genes' => array( 'A07p38470' => 'bna', 'A08p31020' => 'bna', 'Aa31LG7G2050' => 'aar', 'Actinidia16357' => 'ach', 'Ah.08g217430' => 'amhyb', 'Ah.15g094760' => 'amhyb', 'AL1G29490' => 'aly', 'AT1G17240' => 'ath', 'AT1G17250' => 'ath', 'Atru.chr12.1322' => 'acertr', 'Atru.chr12.1324' => 'acertr', 'Atru.chr6.590' => 'acertr', 'Atru.chr8.2121' => 'acertr', 'AUR62001389' => 'cqu', 'AUR62001390' => 'cqu', 'AUR62025605' => 'cqu', 'AUR62025607' => 'cqu', 'AUR62044634' => 'cqu', 'BcaB03g13011' => 'bca', 'BcaB07g34037' => 'bca', 'BcaC05g25653' => 'bca', 'BcaC07g38838' => 'bca', 'BcaC07g41409' => 'bca', 'BcaC07g41431' => 'bca', 'BolC5t30273H' => 'bol', 'BolC8t49404H' => 'bol', 'BolC8t51947H' => 'bol', 'BraA08t35031Z' => 'bra', 'C05p15660' => 'bna', 'C08p17780' => 'bna', 'C08p43980' => 'bna', 'CARHR017820' => 'chi', 'CARHR261670' => 'chi', 'Cc00_g08540' => 'ccan', 'Cc07_g18760' => 'ccan', 'Ciclev10003246m.g' => 'ccl', 'Ciclev10003327m.g' => 'ccl', 'Ciclev10003983m.g' => 'ccl', 'CiPaw.02G055400' => 'cil', 'CiPaw.02G055500' => 'cil', 'CiPaw.02G055600' => 'cil', 'CiPaw.12G005000' => 'cil', 'CiPaw.12G005100' => 'cil', 'CiPaw.12G005300' => 'cil', 'CiPaw.12G005500' => 'cil', 'CiPaw.12G005700' => 'cil', 'CiPaw.13G168900' => 'cil', 'CiPaw.13G169000' => 'cil', 'CiPaw.13G169100' => 'cil', 'CiPaw.13G169200' => 'cil', 'CiPaw.14G126900' => 'cil', 'CiPaw.14G127500' => 'cil', 'CiPaw.14G127900' => 'cil', 'CiPaw.14G128100' => 'cil', 'COL.COLO4_11779' => 'col', 'Dinv36209' => 'din', 'Dinv36211' => 'din', 'EL10Ac7g18247' => 'bvu', 'Eucgr.C04048' => 'egr', 'Eucgr.L00617' => 'egr', 'FAN02G1459' => 'fan', 'FAN02G3970' => 'fan', 'FAN05G4510' => 'fan', 'FAN09G1045' => 'fan', 'FAN11G0089' => 'fan', 'FAN11G0356' => 'fan', 'FAN11G0737' => 'fan', 'FAN11G0797' => 'fan', 'FAN11G0801' => 'fan', 'FAN11G0839' => 'fan', 'FAN11G1318' => 'fan', 'FAN11G1337' => 'fan', 'FAN11G1463' => 'fan', 'FAN11G1557' => 'fan', 'FAN11G1948' => 'fan', 'FAN11G2167' => 'fan', 'FAN11G2215' => 'fan', 'FAN11G2219' => 'fan', 'FAN11G3464' => 'fan', 'FAN14G0819' => 'fan', 'FAN14G3138' => 'fan', 'FAN16G0055' => 'fan', 'FAN16G1850' => 'fan', 'FAN16G3133' => 'fan', 'FAN16G3150' => 'fan', 'FAN16G3500' => 'fan', 'FAN17G1113' => 'fan', 'FAN17G1705' => 'fan', 'FAN18G0990' => 'fan', 'FAN18G1517' => 'fan', 'FAN20G2034' => 'fan', 'FAN21G0338' => 'fan', 'FAN21G0398' => 'fan', 'FAN21G0463' => 'fan', 'FAN21G0758' => 'fan', 'FAN21G0832' => 'fan', 'FAN21G1104' => 'fan', 'FAN21G1410' => 'fan', 'FAN21G2161' => 'fan', 'FAN21G2324' => 'fan', 'FAN21G2334' => 'fan', 'FAN21G2402' => 'fan', 'FAN21G3266' => 'fan', 'FAN21G3398' => 'fan', 'FAN21G3761' => 'fan', 'FAN25G0304' => 'fan', 'FAN25G0712' => 'fan', 'FAN25G0867' => 'fan', 'FAN25G1095' => 'fan', 'FAN25G1606' => 'fan', 'FAN25G2167' => 'fan', 'FAN25G2247' => 'fan', 'FAN25G2420' => 'fan', 'FAN25G2730' => 'fan', 'FAN25G3207' => 'fan', 'FAN25G3351' => 'fan', 'FAN25G3783' => 'fan', 'FvH4_3g20130' => 'fve', 'FvH4_3g38570' => 'fve', 'FvH4_3g39440' => 'fve', 'FvH4_3g39490' => 'fve', 'FvH4_3g44120' => 'fve', 'FvH4_3g44870' => 'fve', 'FvH4_3g44871' => 'fve', 'FvH4_3g44872' => 'fve', 'FvH4_3g44880' => 'fve', 'FvH4_3g44920' => 'fve', 'FvH4_3g44930' => 'fve', 'FvH4_3g44961' => 'fve', 'FvH4_3g45010' => 'fve', 'FvH4_3g45260' => 'fve', 'FvH4_3g45620' => 'fve', 'FvH4_5g12510' => 'fve', 'FvH4_6g36780' => 'fve', 'FvH4_6g36790' => 'fve', 'FvH4_6g36810' => 'fve', 'Gohir.D05G201880' => 'ghi', 'Gorai.005G078900' => 'gra', 'Gorai.009G207700' => 'gra', 'HanXRQChr08g0231561' => 'han', 'HanXRQChr09g0238721' => 'han', 'HanXRQChr09g0238741' => 'han', 'HanXRQChr09g0238751' => 'han', 'HanXRQChr09g0238781' => 'han', 'HanXRQChr09g0238791' => 'han', 'HanXRQChr09g0265391' => 'han', 'HanXRQChr16g0497971' => 'han', 'HanXRQChr16g0497981' => 'han', 'Haze_14215' => 'cav', 'Haze_20041' => 'cav', 'Haze_23027' => 'cav', 'Haze_23090' => 'cav', 'Haze_23091' => 'cav', 'Haze_23094' => 'cav', 'Haze_23095' => 'cav', 'Haze_23096' => 'cav', 'Haze_23097' => 'cav', 'Haze_23098' => 'cav', 'Haze_23099' => 'cav', 'Haze_23100' => 'cav', 'Haze_23683' => 'cav', 'Haze_23684' => 'cav', 'Hma1.2p1_1043F.1_g251220' => 'hma', 'Lj9A144T48' => 'lonja', 'Lj9A144T49' => 'lonja', 'Lj9A144T50' => 'lonja', 'Lj9C144T10' => 'lonja', 'Lj9C144T11' => 'lonja', 'Lj9C144T19' => 'lonja', 'Lj9C144T5' => 'lonja', 'Lj9C144T6' => 'lonja', 'Lj9C144T7' => 'lonja', 'Manes.07G018000' => 'mes', 'MD00G1077300' => 'mdo', 'MD00G1077400' => 'mdo', 'MD00G1077600' => 'mdo', 'MD00G1077700' => 'mdo', 'MD00G1077800' => 'mdo', 'MD00G1082100' => 'mdo', 'MD00G1082200' => 'mdo', 'MD00G1082300' => 'mdo', 'MD00G1082400' => 'mdo', 'MD00G1082500' => 'mdo', 'MD00G1082600' => 'mdo', 'MD00G1082900' => 'mdo', 'MD02G1111300' => 'mdo', 'MD03G1017100' => 'mdo', 'MD03G1017300' => 'mdo', 'MD03G1017400' => 'mdo', 'MD03G1017700' => 'mdo', 'MD03G1017800' => 'mdo', 'MD03G1018000' => 'mdo', 'MD03G1018100' => 'mdo', 'MD03G1018300' => 'mdo', 'MD03G1019300' => 'mdo', 'MD03G1022100' => 'mdo', 'MD03G1131400' => 'mdo', 'MD03G1178700' => 'mdo', 'MD03G1192900' => 'mdo', 'MD03G1224400' => 'mdo', 'MD03G1227100' => 'mdo', 'MD03G1240600' => 'mdo', 'MD03G1243900' => 'mdo', 'MD03G1244000' => 'mdo', 'MD03G1244200' => 'mdo', 'MD04G1167200' => 'mdo', 'MD05G1078800' => 'mdo', 'MD05G1342800' => 'mdo', 'MD06G1055100' => 'mdo', 'MD09G1166700' => 'mdo', 'MD09G1166800' => 'mdo', 'MD09G1166900' => 'mdo', 'MD10G1316900' => 'mdo', 'MD10G1317500' => 'mdo', 'MD11G1017800' => 'mdo', 'MD11G1017900' => 'mdo', 'MD11G1018100' => 'mdo', 'MD11G1018300' => 'mdo', 'MD11G1018400' => 'mdo', 'MD11G1018500' => 'mdo', 'MD11G1018800' => 'mdo', 'MD11G1018900' => 'mdo', 'MD11G1019000' => 'mdo', 'MD11G1247900' => 'mdo', 'MD11G1248200' => 'mdo', 'MD11G1248600' => 'mdo', 'MD11G1248700' => 'mdo', 'MD11G1249200' => 'mdo', 'MD11G1249300' => 'mdo', 'MD11G1249400' => 'mdo', 'MD13G1259100' => 'mdo', 'MD14G1097700' => 'mdo', 'Migut.N00536' => 'egut', 'MSTRG.12052' => 'ama', 'MSTRG.12803' => 'ama', 'MSTRG.18036' => 'ama', 'MSTRG.25554' => 'ama', 'Oeu019520.1' => 'oeu', 'Oeu019522.1' => 'oeu', 'Oeu019524.1' => 'oeu', 'Oeu019525.1' => 'oeu', 'Oeu019526.1' => 'oeu', 'Oeu019527.1' => 'oeu', 'Oeu021012.1' => 'oeu', 'Oeu023970.1' => 'oeu', 'Oeu023971.1' => 'oeu', 'Oeu060899.2' => 'oeu', 'Oeu060903.1' => 'oeu', 'Oeu060905.1' => 'oeu', 'Os02g0155400' => 'osa', 'Os02g0155600' => 'osa', 'Os02g0155700' => 'osa', 'Os02g0155900' => 'osa', 'Os02g0156200' => 'osa', 'Os02g0156400' => 'osa', 'Os02g0156600' => 'osa', 'Os02g0156633' => 'osa', 'Os02g0156800' => 'osa', 'Os02g0157000' => 'osa', 'Os02g0157100' => 'osa', 'Os02g0157200' => 'osa', 'Os02g0157400' => 'osa', 'Os02g0515125' => 'osa', 'Peaxi162Scf00652g00043' => 'pax', 'Prupe.2G076700' => 'ppe', 'Prupe.2G098300' => 'ppe', 'Prupe.2G098400' => 'ppe', 'Prupe.2G098500' => 'ppe', 'Prupe.2G104600' => 'ppe', 'Prupe.3G024400' => 'ppe', 'Prupe.3G024600' => 'ppe', 'Prupe.3G024700' => 'ppe', 'Prupe.4G161800' => 'ppe', 'Prupe.4G162000' => 'ppe', 'Prupe.4G162500' => 'ppe', 'Prupe.4G162600' => 'ppe', 'Prupe.4G162700' => 'ppe', 'Prupe.4G162800' => 'ppe', 'Prupe.4G162900' => 'ppe', 'Prupe.4G163000' => 'ppe', 'Prupe.4G163100' => 'ppe', 'Prupe.4G163200' => 'ppe', 'Prupe.4G163400' => 'ppe', 'Prupe.4G163500' => 'ppe', 'Prupe.4G163700' => 'ppe', 'Prupe.4G163800' => 'ppe', 'Prupe.4G164200' => 'ppe', 'Prupe.4G168500' => 'ppe', 'Prupe.4G168700' => 'ppe', 'Prupe.4G168800' => 'ppe', 'Prupe.4G169200' => 'ppe', 'Prupe.4G169300' => 'ppe', 'Prupe.4G169500' => 'ppe', 'Prupe.4G169600' => 'ppe', 'Prupe.4G169700' => 'ppe', 'Prupe.4G169800' => 'ppe', 'Prupe.4G169900' => 'ppe', 'Prupe.4G246600' => 'ppe', 'Prupe.4G247100' => 'ppe', 'Prupe.6G009600' => 'ppe', 'Prupe.6G009700' => 'ppe', 'Prupe.6G015500' => 'ppe', 'Prupe.6G015600' => 'ppe', 'Prupe.6G116800' => 'ppe', 'Prupe.8G027500' => 'ppe', 'Prupe.I002800' => 'ppe', 'Prupe.I002900' => 'ppe', 'Psat1g125280' => 'psa', 'RcHm_v2.0_Chr1g0319001' => 'rch', 'RcHm_v2.0_Chr1g0324181' => 'rch', 'RcHm_v2.0_Chr1g0324191' => 'rch', 'RcHm_v2.0_Chr1g0324201' => 'rch', 'RcHm_v2.0_Chr1g0325621' => 'rch', 'RcHm_v2.0_Chr1g0325631' => 'rch', 'RcHm_v2.0_Chr1g0337581' => 'rch', 'RcHm_v2.0_Chr1g0356371' => 'rch', 'RcHm_v2.0_Chr1g0382031' => 'rch', 'RcHm_v2.0_Chr2g0141321' => 'rch', 'RcHm_v2.0_Chr2g0149181' => 'rch', 'RcHm_v2.0_Chr2g0149201' => 'rch', 'RcHm_v2.0_Chr3g0460481' => 'rch', 'RcHm_v2.0_Chr3g0460851' => 'rch', 'RcHm_v2.0_Chr4g0390631' => 'rch', 'RcHm_v2.0_Chr4g0401291' => 'rch', 'RcHm_v2.0_Chr4g0401451' => 'rch', 'RcHm_v2.0_Chr4g0401571' => 'rch', 'RcHm_v2.0_Chr4g0401581' => 'rch', 'RcHm_v2.0_Chr5g0048661' => 'rch', 'RcHm_v2.0_Chr5g0061041' => 'rch', 'RcHm_v2.0_Chr5g0070971' => 'rch', 'RcHm_v2.0_Chr5g0070981' => 'rch', 'RcHm_v2.0_Chr5g0071011' => 'rch', 'RcHm_v2.0_Chr5g0071031' => 'rch', 'RcHm_v2.0_Chr5g0071041' => 'rch', 'RcHm_v2.0_Chr5g0071071' => 'rch', 'RcHm_v2.0_Chr5g0071241' => 'rch', 'RcHm_v2.0_Chr5g0073001' => 'rch', 'RcHm_v2.0_Chr5g0080401' => 'rch', 'RcHm_v2.0_Chr5g0080411' => 'rch', 'RcHm_v2.0_Chr5g0080431' => 'rch', 'RcHm_v2.0_Chr5g0081581' => 'rch', 'RcHm_v2.0_Chr5g0081611' => 'rch', 'RcHm_v2.0_Chr5g0081621' => 'rch', 'RcHm_v2.0_Chr5g0081631' => 'rch', 'RcHm_v2.0_Chr5g0081651' => 'rch', 'RcHm_v2.0_Chr5g0081681' => 'rch', 'RcHm_v2.0_Chr5g0081691' => 'rch', 'RcHm_v2.0_Chr5g0081701' => 'rch', 'RcHm_v2.0_Chr5g0081711' => 'rch', 'RcHm_v2.0_Chr5g0081721' => 'rch', 'RcHm_v2.0_Chr5g0081771' => 'rch', 'RcHm_v2.0_Chr5g0081811' => 'rch', 'RcHm_v2.0_Chr5g0081871' => 'rch', 'RcHm_v2.0_Chr5g0081881' => 'rch', 'RcHm_v2.0_Chr5g0081891' => 'rch', 'RcHm_v2.0_Chr5g0081941' => 'rch', 'RcHm_v2.0_Chr5g0081991' => 'rch', 'RcHm_v2.0_Chr5g0082011' => 'rch', 'RcHm_v2.0_Chr5g0082041' => 'rch', 'RcHm_v2.0_Chr5g0082061' => 'rch', 'RcHm_v2.0_Chr5g0082071' => 'rch', 'RcHm_v2.0_Chr5g0082091' => 'rch', 'RcHm_v2.0_Chr5g0082101' => 'rch', 'RcHm_v2.0_Chr5g0082111' => 'rch', 'RcHm_v2.0_Chr5g0082121' => 'rch', 'RcHm_v2.0_Chr5g0082131' => 'rch', 'RcHm_v2.0_Chr5g0082161' => 'rch', 'RcHm_v2.0_Chr5g0082181' => 'rch', 'RcHm_v2.0_Chr5g0082191' => 'rch', 'RcHm_v2.0_Chr5g0082221' => 'rch', 'RcHm_v2.0_Chr5g0082241' => 'rch', 'RcHm_v2.0_Chr5g0082281' => 'rch', 'RcHm_v2.0_Chr5g0082311' => 'rch', 'RcHm_v2.0_Chr5g0082341' => 'rch', 'RcHm_v2.0_Chr5g0082351' => 'rch', 'RcHm_v2.0_Chr5g0082361' => 'rch', 'RcHm_v2.0_Chr5g0082381' => 'rch', 'RcHm_v2.0_Chr5g0082401' => 'rch', 'RcHm_v2.0_Chr5g0082481' => 'rch', 'RcHm_v2.0_Chr5g0082491' => 'rch', 'RcHm_v2.0_Chr5g0082511' => 'rch', 'RcHm_v2.0_Chr5g0082541' => 'rch', 'RcHm_v2.0_Chr5g0082571' => 'rch', 'RcHm_v2.0_Chr5g0082581' => 'rch', 'RcHm_v2.0_Chr5g0082641' => 'rch', 'RcHm_v2.0_Chr5g0082681' => 'rch', 'RcHm_v2.0_Chr5g0082691' => 'rch', 'RcHm_v2.0_Chr5g0082711' => 'rch', 'RcHm_v2.0_Chr5g0082721' => 'rch', 'RcHm_v2.0_Chr5g0082741' => 'rch', 'RcHm_v2.0_Chr5g0082761' => 'rch', 'RcHm_v2.0_Chr5g0082791' => 'rch', 'RcHm_v2.0_Chr5g0082911' => 'rch', 'RcHm_v2.0_Chr5g0083581' => 'rch', 'RcHm_v2.0_Chr5g0083791' => 'rch', 'RcHm_v2.0_Chr5g0083801' => 'rch', 'RcHm_v2.0_Chr6g0254081' => 'rch', 'RcHm_v2.0_Chr6g0254101' => 'rch', 'RcHm_v2.0_Chr6g0264921' => 'rch', 'RcHm_v2.0_Chr6g0288571' => 'rch', 'RcHm_v2.0_Chr6g0288581' => 'rch', 'RcHm_v2.0_Chr7g0219981' => 'rch', 'SalBow1G5056' => 'sbo', 'SalBow2G2721' => 'sbo', 'SalBow5G3732' => 'sbo', 'SalBow8G0205' => 'sbo', 'Sed0024216' => 'sed', 'SGA_v2.0_scaffold3G01691' => 'sas', 'SGA_v2.0_scaffold3G01708' => 'sas', 'Sp1g15380' => 'spa', 'THA.LOC104798562' => 'tha', 'Thhalv10006928m.g' => 'esa', 'TWI59G1077' => 'twi', 'TWI59G1427' => 'twi', 'VMungo0647G0371' => 'vmu', 'VMungo1127G1468' => 'vmu', 'Zm00001eb011510' => 'zma', 'Zm00001eb100940' => 'zma', 'Zm00001eb207750' => 'zma', 'Zm00001eb424910' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001506' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001506' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001506' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001506' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001506', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '420', 'num_species' => '46' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A07p38470' => 'bna', 'A08p31020' => 'bna', 'Aa31LG7G2050' => 'aar', 'Actinidia16357' => 'ach', 'Ah.08g217430' => 'amhyb', 'Ah.15g094760' => 'amhyb', 'AL1G29490' => 'aly', 'AT1G17240' => 'ath', 'AT1G17250' => 'ath', 'Atru.chr12.1322' => 'acertr', 'Atru.chr12.1324' => 'acertr', 'Atru.chr6.590' => 'acertr', 'Atru.chr8.2121' => 'acertr', 'AUR62001389' => 'cqu', 'AUR62001390' => 'cqu', 'AUR62025605' => 'cqu', 'AUR62025607' => 'cqu', 'AUR62044634' => 'cqu', 'BcaB03g13011' => 'bca', 'BcaB07g34037' => 'bca', 'BcaC05g25653' => 'bca', 'BcaC07g38838' => 'bca', 'BcaC07g41409' => 'bca', 'BcaC07g41431' => 'bca', 'BolC5t30273H' => 'bol', 'BolC8t49404H' => 'bol', 'BolC8t51947H' => 'bol', 'BraA08t35031Z' => 'bra', 'C05p15660' => 'bna', 'C08p17780' => 'bna', 'C08p43980' => 'bna', 'CARHR017820' => 'chi', 'CARHR261670' => 'chi', 'Cc00_g08540' => 'ccan', 'Cc07_g18760' => 'ccan', 'Ciclev10003246m.g' => 'ccl', 'Ciclev10003327m.g' => 'ccl', 'Ciclev10003983m.g' => 'ccl', 'CiPaw.02G055400' => 'cil', 'CiPaw.02G055500' => 'cil', 'CiPaw.02G055600' => 'cil', 'CiPaw.12G005000' => 'cil', 'CiPaw.12G005100' => 'cil', 'CiPaw.12G005300' => 'cil', 'CiPaw.12G005500' => 'cil', 'CiPaw.12G005700' => 'cil', 'CiPaw.13G168900' => 'cil', 'CiPaw.13G169000' => 'cil', 'CiPaw.13G169100' => 'cil', 'CiPaw.13G169200' => 'cil', 'CiPaw.14G126900' => 'cil', 'CiPaw.14G127500' => 'cil', 'CiPaw.14G127900' => 'cil', 'CiPaw.14G128100' => 'cil', 'COL.COLO4_11779' => 'col', 'Dinv36209' => 'din', 'Dinv36211' => 'din', 'EL10Ac7g18247' => 'bvu', 'Eucgr.C04048' => 'egr', 'Eucgr.L00617' => 'egr', 'FAN02G1459' => 'fan', 'FAN02G3970' => 'fan', 'FAN05G4510' => 'fan', 'FAN09G1045' => 'fan', 'FAN11G0089' => 'fan', 'FAN11G0356' => 'fan', 'FAN11G0737' => 'fan', 'FAN11G0797' => 'fan', 'FAN11G0801' => 'fan', 'FAN11G0839' => 'fan', 'FAN11G1318' => 'fan', 'FAN11G1337' => 'fan', 'FAN11G1463' => 'fan', 'FAN11G1557' => 'fan', 'FAN11G1948' => 'fan', 'FAN11G2167' => 'fan', 'FAN11G2215' => 'fan', 'FAN11G2219' => 'fan', 'FAN11G3464' => 'fan', 'FAN14G0819' => 'fan', 'FAN14G3138' => 'fan', 'FAN16G0055' => 'fan', 'FAN16G1850' => 'fan', 'FAN16G3133' => 'fan', 'FAN16G3150' => 'fan', 'FAN16G3500' => 'fan', 'FAN17G1113' => 'fan', 'FAN17G1705' => 'fan', 'FAN18G0990' => 'fan', 'FAN18G1517' => 'fan', 'FAN20G2034' => 'fan', 'FAN21G0338' => 'fan', 'FAN21G0398' => 'fan', 'FAN21G0463' => 'fan', 'FAN21G0758' => 'fan', 'FAN21G0832' => 'fan', 'FAN21G1104' => 'fan', 'FAN21G1410' => 'fan', 'FAN21G2161' => 'fan', 'FAN21G2324' => 'fan', 'FAN21G2334' => 'fan', 'FAN21G2402' => 'fan', 'FAN21G3266' => 'fan', 'FAN21G3398' => 'fan', 'FAN21G3761' => 'fan', 'FAN25G0304' => 'fan', 'FAN25G0712' => 'fan', 'FAN25G0867' => 'fan', 'FAN25G1095' => 'fan', 'FAN25G1606' => 'fan', 'FAN25G2167' => 'fan', 'FAN25G2247' => 'fan', 'FAN25G2420' => 'fan', 'FAN25G2730' => 'fan', 'FAN25G3207' => 'fan', 'FAN25G3351' => 'fan', 'FAN25G3783' => 'fan', 'FvH4_3g20130' => 'fve', 'FvH4_3g38570' => 'fve', 'FvH4_3g39440' => 'fve', 'FvH4_3g39490' => 'fve', 'FvH4_3g44120' => 'fve', 'FvH4_3g44870' => 'fve', 'FvH4_3g44871' => 'fve', 'FvH4_3g44872' => 'fve', 'FvH4_3g44880' => 'fve', 'FvH4_3g44920' => 'fve', 'FvH4_3g44930' => 'fve', 'FvH4_3g44961' => 'fve', 'FvH4_3g45010' => 'fve', 'FvH4_3g45260' => 'fve', 'FvH4_3g45620' => 'fve', 'FvH4_5g12510' => 'fve', 'FvH4_6g36780' => 'fve', 'FvH4_6g36790' => 'fve', 'FvH4_6g36810' => 'fve', 'Gohir.D05G201880' => 'ghi', 'Gorai.005G078900' => 'gra', 'Gorai.009G207700' => 'gra', 'HanXRQChr08g0231561' => 'han', 'HanXRQChr09g0238721' => 'han', 'HanXRQChr09g0238741' => 'han', 'HanXRQChr09g0238751' => 'han', 'HanXRQChr09g0238781' => 'han', 'HanXRQChr09g0238791' => 'han', 'HanXRQChr09g0265391' => 'han', 'HanXRQChr16g0497971' => 'han', 'HanXRQChr16g0497981' => 'han', 'Haze_14215' => 'cav', 'Haze_20041' => 'cav', 'Haze_23027' => 'cav', 'Haze_23090' => 'cav', 'Haze_23091' => 'cav', 'Haze_23094' => 'cav', 'Haze_23095' => 'cav', 'Haze_23096' => 'cav', 'Haze_23097' => 'cav', 'Haze_23098' => 'cav', 'Haze_23099' => 'cav', 'Haze_23100' => 'cav', 'Haze_23683' => 'cav', 'Haze_23684' => 'cav', 'Hma1.2p1_1043F.1_g251220' => 'hma', 'Lj9A144T48' => 'lonja', 'Lj9A144T49' => 'lonja', 'Lj9A144T50' => 'lonja', 'Lj9C144T10' => 'lonja', 'Lj9C144T11' => 'lonja', 'Lj9C144T19' => 'lonja', 'Lj9C144T5' => 'lonja', 'Lj9C144T6' => 'lonja', 'Lj9C144T7' => 'lonja', 'Manes.07G018000' => 'mes', 'MD00G1077300' => 'mdo', 'MD00G1077400' => 'mdo', 'MD00G1077600' => 'mdo', 'MD00G1077700' => 'mdo', 'MD00G1077800' => 'mdo', 'MD00G1082100' => 'mdo', 'MD00G1082200' => 'mdo', 'MD00G1082300' => 'mdo', 'MD00G1082400' => 'mdo', 'MD00G1082500' => 'mdo', 'MD00G1082600' => 'mdo', 'MD00G1082900' => 'mdo', 'MD02G1111300' => 'mdo', 'MD03G1017100' => 'mdo', 'MD03G1017300' => 'mdo', 'MD03G1017400' => 'mdo', 'MD03G1017700' => 'mdo', 'MD03G1017800' => 'mdo', 'MD03G1018000' => 'mdo', 'MD03G1018100' => 'mdo', 'MD03G1018300' => 'mdo', 'MD03G1019300' => 'mdo', 'MD03G1022100' => 'mdo', 'MD03G1131400' => 'mdo', 'MD03G1178700' => 'mdo', 'MD03G1192900' => 'mdo', 'MD03G1224400' => 'mdo', 'MD03G1227100' => 'mdo', 'MD03G1240600' => 'mdo', 'MD03G1243900' => 'mdo', 'MD03G1244000' => 'mdo', 'MD03G1244200' => 'mdo', 'MD04G1167200' => 'mdo', 'MD05G1078800' => 'mdo', 'MD05G1342800' => 'mdo', 'MD06G1055100' => 'mdo', 'MD09G1166700' => 'mdo', 'MD09G1166800' => 'mdo', 'MD09G1166900' => 'mdo', 'MD10G1316900' => 'mdo', 'MD10G1317500' => 'mdo', 'MD11G1017800' => 'mdo', 'MD11G1017900' => 'mdo', 'MD11G1018100' => 'mdo', 'MD11G1018300' => 'mdo', 'MD11G1018400' => 'mdo', 'MD11G1018500' => 'mdo', 'MD11G1018800' => 'mdo', 'MD11G1018900' => 'mdo', 'MD11G1019000' => 'mdo', 'MD11G1247900' => 'mdo', 'MD11G1248200' => 'mdo', 'MD11G1248600' => 'mdo', 'MD11G1248700' => 'mdo', 'MD11G1249200' => 'mdo', 'MD11G1249300' => 'mdo', 'MD11G1249400' => 'mdo', 'MD13G1259100' => 'mdo', 'MD14G1097700' => 'mdo', 'Migut.N00536' => 'egut', 'MSTRG.12052' => 'ama', 'MSTRG.12803' => 'ama', 'MSTRG.18036' => 'ama', 'MSTRG.25554' => 'ama', 'Oeu019520.1' => 'oeu', 'Oeu019522.1' => 'oeu', 'Oeu019524.1' => 'oeu', 'Oeu019525.1' => 'oeu', 'Oeu019526.1' => 'oeu', 'Oeu019527.1' => 'oeu', 'Oeu021012.1' => 'oeu', 'Oeu023970.1' => 'oeu', 'Oeu023971.1' => 'oeu', 'Oeu060899.2' => 'oeu', 'Oeu060903.1' => 'oeu', 'Oeu060905.1' => 'oeu', 'Os02g0155400' => 'osa', 'Os02g0155600' => 'osa', 'Os02g0155700' => 'osa', 'Os02g0155900' => 'osa', 'Os02g0156200' => 'osa', 'Os02g0156400' => 'osa', 'Os02g0156600' => 'osa', 'Os02g0156633' => 'osa', 'Os02g0156800' => 'osa', 'Os02g0157000' => 'osa', 'Os02g0157100' => 'osa', 'Os02g0157200' => 'osa', 'Os02g0157400' => 'osa', 'Os02g0515125' => 'osa', 'Peaxi162Scf00652g00043' => 'pax', 'Prupe.2G076700' => 'ppe', 'Prupe.2G098300' => 'ppe', 'Prupe.2G098400' => 'ppe', 'Prupe.2G098500' => 'ppe', 'Prupe.2G104600' => 'ppe', 'Prupe.3G024400' => 'ppe', 'Prupe.3G024600' => 'ppe', 'Prupe.3G024700' => 'ppe', 'Prupe.4G161800' => 'ppe', 'Prupe.4G162000' => 'ppe', 'Prupe.4G162500' => 'ppe', 'Prupe.4G162600' => 'ppe', 'Prupe.4G162700' => 'ppe', 'Prupe.4G162800' => 'ppe', 'Prupe.4G162900' => 'ppe', 'Prupe.4G163000' => 'ppe', 'Prupe.4G163100' => 'ppe', 'Prupe.4G163200' => 'ppe', 'Prupe.4G163400' => 'ppe', 'Prupe.4G163500' => 'ppe', 'Prupe.4G163700' => 'ppe', 'Prupe.4G163800' => 'ppe', 'Prupe.4G164200' => 'ppe', 'Prupe.4G168500' => 'ppe', 'Prupe.4G168700' => 'ppe', 'Prupe.4G168800' => 'ppe', 'Prupe.4G169200' => 'ppe', 'Prupe.4G169300' => 'ppe', 'Prupe.4G169500' => 'ppe', 'Prupe.4G169600' => 'ppe', 'Prupe.4G169700' => 'ppe', 'Prupe.4G169800' => 'ppe', 'Prupe.4G169900' => 'ppe', 'Prupe.4G246600' => 'ppe', 'Prupe.4G247100' => 'ppe', 'Prupe.6G009600' => 'ppe', 'Prupe.6G009700' => 'ppe', 'Prupe.6G015500' => 'ppe', 'Prupe.6G015600' => 'ppe', 'Prupe.6G116800' => 'ppe', 'Prupe.8G027500' => 'ppe', 'Prupe.I002800' => 'ppe', 'Prupe.I002900' => 'ppe', 'Psat1g125280' => 'psa', 'RcHm_v2.0_Chr1g0319001' => 'rch', 'RcHm_v2.0_Chr1g0324181' => 'rch', 'RcHm_v2.0_Chr1g0324191' => 'rch', 'RcHm_v2.0_Chr1g0324201' => 'rch', 'RcHm_v2.0_Chr1g0325621' => 'rch', 'RcHm_v2.0_Chr1g0325631' => 'rch', 'RcHm_v2.0_Chr1g0337581' => 'rch', 'RcHm_v2.0_Chr1g0356371' => 'rch', 'RcHm_v2.0_Chr1g0382031' => 'rch', 'RcHm_v2.0_Chr2g0141321' => 'rch', 'RcHm_v2.0_Chr2g0149181' => 'rch', 'RcHm_v2.0_Chr2g0149201' => 'rch', 'RcHm_v2.0_Chr3g0460481' => 'rch', 'RcHm_v2.0_Chr3g0460851' => 'rch', 'RcHm_v2.0_Chr4g0390631' => 'rch', 'RcHm_v2.0_Chr4g0401291' => 'rch', 'RcHm_v2.0_Chr4g0401451' => 'rch', 'RcHm_v2.0_Chr4g0401571' => 'rch', 'RcHm_v2.0_Chr4g0401581' => 'rch', 'RcHm_v2.0_Chr5g0048661' => 'rch', 'RcHm_v2.0_Chr5g0061041' => 'rch', 'RcHm_v2.0_Chr5g0070971' => 'rch', 'RcHm_v2.0_Chr5g0070981' => 'rch', 'RcHm_v2.0_Chr5g0071011' => 'rch', 'RcHm_v2.0_Chr5g0071031' => 'rch', 'RcHm_v2.0_Chr5g0071041' => 'rch', 'RcHm_v2.0_Chr5g0071071' => 'rch', 'RcHm_v2.0_Chr5g0071241' => 'rch', 'RcHm_v2.0_Chr5g0073001' => 'rch', 'RcHm_v2.0_Chr5g0080401' => 'rch', 'RcHm_v2.0_Chr5g0080411' => 'rch', 'RcHm_v2.0_Chr5g0080431' => 'rch', 'RcHm_v2.0_Chr5g0081581' => 'rch', 'RcHm_v2.0_Chr5g0081611' => 'rch', 'RcHm_v2.0_Chr5g0081621' => 'rch', 'RcHm_v2.0_Chr5g0081631' => 'rch', 'RcHm_v2.0_Chr5g0081651' => 'rch', 'RcHm_v2.0_Chr5g0081681' => 'rch', 'RcHm_v2.0_Chr5g0081691' => 'rch', 'RcHm_v2.0_Chr5g0081701' => 'rch', 'RcHm_v2.0_Chr5g0081711' => 'rch', 'RcHm_v2.0_Chr5g0081721' => 'rch', 'RcHm_v2.0_Chr5g0081771' => 'rch', 'RcHm_v2.0_Chr5g0081811' => 'rch', 'RcHm_v2.0_Chr5g0081871' => 'rch', 'RcHm_v2.0_Chr5g0081881' => 'rch', 'RcHm_v2.0_Chr5g0081891' => 'rch', 'RcHm_v2.0_Chr5g0081941' => 'rch', 'RcHm_v2.0_Chr5g0081991' => 'rch', 'RcHm_v2.0_Chr5g0082011' => 'rch', 'RcHm_v2.0_Chr5g0082041' => 'rch', 'RcHm_v2.0_Chr5g0082061' => 'rch', 'RcHm_v2.0_Chr5g0082071' => 'rch', 'RcHm_v2.0_Chr5g0082091' => 'rch', 'RcHm_v2.0_Chr5g0082101' => 'rch', 'RcHm_v2.0_Chr5g0082111' => 'rch', 'RcHm_v2.0_Chr5g0082121' => 'rch', 'RcHm_v2.0_Chr5g0082131' => 'rch', 'RcHm_v2.0_Chr5g0082161' => 'rch', 'RcHm_v2.0_Chr5g0082181' => 'rch', 'RcHm_v2.0_Chr5g0082191' => 'rch', 'RcHm_v2.0_Chr5g0082221' => 'rch', 'RcHm_v2.0_Chr5g0082241' => 'rch', 'RcHm_v2.0_Chr5g0082281' => 'rch', 'RcHm_v2.0_Chr5g0082311' => 'rch', 'RcHm_v2.0_Chr5g0082341' => 'rch', 'RcHm_v2.0_Chr5g0082351' => 'rch', 'RcHm_v2.0_Chr5g0082361' => 'rch', 'RcHm_v2.0_Chr5g0082381' => 'rch', 'RcHm_v2.0_Chr5g0082401' => 'rch', 'RcHm_v2.0_Chr5g0082481' => 'rch', 'RcHm_v2.0_Chr5g0082491' => 'rch', 'RcHm_v2.0_Chr5g0082511' => 'rch', 'RcHm_v2.0_Chr5g0082541' => 'rch', 'RcHm_v2.0_Chr5g0082571' => 'rch', 'RcHm_v2.0_Chr5g0082581' => 'rch', 'RcHm_v2.0_Chr5g0082641' => 'rch', 'RcHm_v2.0_Chr5g0082681' => 'rch', 'RcHm_v2.0_Chr5g0082691' => 'rch', 'RcHm_v2.0_Chr5g0082711' => 'rch', 'RcHm_v2.0_Chr5g0082721' => 'rch', 'RcHm_v2.0_Chr5g0082741' => 'rch', 'RcHm_v2.0_Chr5g0082761' => 'rch', 'RcHm_v2.0_Chr5g0082791' => 'rch', 'RcHm_v2.0_Chr5g0082911' => 'rch', 'RcHm_v2.0_Chr5g0083581' => 'rch', 'RcHm_v2.0_Chr5g0083791' => 'rch', 'RcHm_v2.0_Chr5g0083801' => 'rch', 'RcHm_v2.0_Chr6g0254081' => 'rch', 'RcHm_v2.0_Chr6g0254101' => 'rch', 'RcHm_v2.0_Chr6g0264921' => 'rch', 'RcHm_v2.0_Chr6g0288571' => 'rch', 'RcHm_v2.0_Chr6g0288581' => 'rch', 'RcHm_v2.0_Chr7g0219981' => 'rch', 'SalBow1G5056' => 'sbo', 'SalBow2G2721' => 'sbo', 'SalBow5G3732' => 'sbo', 'SalBow8G0205' => 'sbo', 'Sed0024216' => 'sed', 'SGA_v2.0_scaffold3G01691' => 'sas', 'SGA_v2.0_scaffold3G01708' => 'sas', 'Sp1g15380' => 'spa', 'THA.LOC104798562' => 'tha', 'Thhalv10006928m.g' => 'esa', 'TWI59G1077' => 'twi', 'TWI59G1427' => 'twi', 'VMungo0647G0371' => 'vmu', 'VMungo1127G1468' => 'vmu', 'Zm00001eb011510' => 'zma', 'Zm00001eb100940' => 'zma', 'Zm00001eb207750' => 'zma', 'Zm00001eb424910' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001506', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001506' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001506', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '420', 'num_species' => '46' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001506' ) ), 'genes' => array( 'A07p38470' => 'bna', 'A08p31020' => 'bna', 'Aa31LG7G2050' => 'aar', 'Actinidia16357' => 'ach', 'Ah.08g217430' => 'amhyb', 'Ah.15g094760' => 'amhyb', 'AL1G29490' => 'aly', 'AT1G17240' => 'ath', 'AT1G17250' => 'ath', 'Atru.chr12.1322' => 'acertr', 'Atru.chr12.1324' => 'acertr', 'Atru.chr6.590' => 'acertr', 'Atru.chr8.2121' => 'acertr', 'AUR62001389' => 'cqu', 'AUR62001390' => 'cqu', 'AUR62025605' => 'cqu', 'AUR62025607' => 'cqu', 'AUR62044634' => 'cqu', 'BcaB03g13011' => 'bca', 'BcaB07g34037' => 'bca', 'BcaC05g25653' => 'bca', 'BcaC07g38838' => 'bca', 'BcaC07g41409' => 'bca', 'BcaC07g41431' => 'bca', 'BolC5t30273H' => 'bol', 'BolC8t49404H' => 'bol', 'BolC8t51947H' => 'bol', 'BraA08t35031Z' => 'bra', 'C05p15660' => 'bna', 'C08p17780' => 'bna', 'C08p43980' => 'bna', 'CARHR017820' => 'chi', 'CARHR261670' => 'chi', 'Cc00_g08540' => 'ccan', 'Cc07_g18760' => 'ccan', 'Ciclev10003246m.g' => 'ccl', 'Ciclev10003327m.g' => 'ccl', 'Ciclev10003983m.g' => 'ccl', 'CiPaw.02G055400' => 'cil', 'CiPaw.02G055500' => 'cil', 'CiPaw.02G055600' => 'cil', 'CiPaw.12G005000' => 'cil', 'CiPaw.12G005100' => 'cil', 'CiPaw.12G005300' => 'cil', 'CiPaw.12G005500' => 'cil', 'CiPaw.12G005700' => 'cil', 'CiPaw.13G168900' => 'cil', 'CiPaw.13G169000' => 'cil', 'CiPaw.13G169100' => 'cil', 'CiPaw.13G169200' => 'cil', 'CiPaw.14G126900' => 'cil', 'CiPaw.14G127500' => 'cil', 'CiPaw.14G127900' => 'cil', 'CiPaw.14G128100' => 'cil', 'COL.COLO4_11779' => 'col', 'Dinv36209' => 'din', 'Dinv36211' => 'din', 'EL10Ac7g18247' => 'bvu', 'Eucgr.C04048' => 'egr', 'Eucgr.L00617' => 'egr', 'FAN02G1459' => 'fan', 'FAN02G3970' => 'fan', 'FAN05G4510' => 'fan', 'FAN09G1045' => 'fan', 'FAN11G0089' => 'fan', 'FAN11G0356' => 'fan', 'FAN11G0737' => 'fan', 'FAN11G0797' => 'fan', 'FAN11G0801' => 'fan', 'FAN11G0839' => 'fan', 'FAN11G1318' => 'fan', 'FAN11G1337' => 'fan', 'FAN11G1463' => 'fan', 'FAN11G1557' => 'fan', 'FAN11G1948' => 'fan', 'FAN11G2167' => 'fan', 'FAN11G2215' => 'fan', 'FAN11G2219' => 'fan', 'FAN11G3464' => 'fan', 'FAN14G0819' => 'fan', 'FAN14G3138' => 'fan', 'FAN16G0055' => 'fan', 'FAN16G1850' => 'fan', 'FAN16G3133' => 'fan', 'FAN16G3150' => 'fan', 'FAN16G3500' => 'fan', 'FAN17G1113' => 'fan', 'FAN17G1705' => 'fan', 'FAN18G0990' => 'fan', 'FAN18G1517' => 'fan', 'FAN20G2034' => 'fan', 'FAN21G0338' => 'fan', 'FAN21G0398' => 'fan', 'FAN21G0463' => 'fan', 'FAN21G0758' => 'fan', 'FAN21G0832' => 'fan', 'FAN21G1104' => 'fan', 'FAN21G1410' => 'fan', 'FAN21G2161' => 'fan', 'FAN21G2324' => 'fan', 'FAN21G2334' => 'fan', 'FAN21G2402' => 'fan', 'FAN21G3266' => 'fan', 'FAN21G3398' => 'fan', 'FAN21G3761' => 'fan', 'FAN25G0304' => 'fan', 'FAN25G0712' => 'fan', 'FAN25G0867' => 'fan', 'FAN25G1095' => 'fan', 'FAN25G1606' => 'fan', 'FAN25G2167' => 'fan', 'FAN25G2247' => 'fan', 'FAN25G2420' => 'fan', 'FAN25G2730' => 'fan', 'FAN25G3207' => 'fan', 'FAN25G3351' => 'fan', 'FAN25G3783' => 'fan', 'FvH4_3g20130' => 'fve', 'FvH4_3g38570' => 'fve', 'FvH4_3g39440' => 'fve', 'FvH4_3g39490' => 'fve', 'FvH4_3g44120' => 'fve', 'FvH4_3g44870' => 'fve', 'FvH4_3g44871' => 'fve', 'FvH4_3g44872' => 'fve', 'FvH4_3g44880' => 'fve', 'FvH4_3g44920' => 'fve', 'FvH4_3g44930' => 'fve', 'FvH4_3g44961' => 'fve', 'FvH4_3g45010' => 'fve', 'FvH4_3g45260' => 'fve', 'FvH4_3g45620' => 'fve', 'FvH4_5g12510' => 'fve', 'FvH4_6g36780' => 'fve', 'FvH4_6g36790' => 'fve', 'FvH4_6g36810' => 'fve', 'Gohir.D05G201880' => 'ghi', 'Gorai.005G078900' => 'gra', 'Gorai.009G207700' => 'gra', 'HanXRQChr08g0231561' => 'han', 'HanXRQChr09g0238721' => 'han', 'HanXRQChr09g0238741' => 'han', 'HanXRQChr09g0238751' => 'han', 'HanXRQChr09g0238781' => 'han', 'HanXRQChr09g0238791' => 'han', 'HanXRQChr09g0265391' => 'han', 'HanXRQChr16g0497971' => 'han', 'HanXRQChr16g0497981' => 'han', 'Haze_14215' => 'cav', 'Haze_20041' => 'cav', 'Haze_23027' => 'cav', 'Haze_23090' => 'cav', 'Haze_23091' => 'cav', 'Haze_23094' => 'cav', 'Haze_23095' => 'cav', 'Haze_23096' => 'cav', 'Haze_23097' => 'cav', 'Haze_23098' => 'cav', 'Haze_23099' => 'cav', 'Haze_23100' => 'cav', 'Haze_23683' => 'cav', 'Haze_23684' => 'cav', 'Hma1.2p1_1043F.1_g251220' => 'hma', 'Lj9A144T48' => 'lonja', 'Lj9A144T49' => 'lonja', 'Lj9A144T50' => 'lonja', 'Lj9C144T10' => 'lonja', 'Lj9C144T11' => 'lonja', 'Lj9C144T19' => 'lonja', 'Lj9C144T5' => 'lonja', 'Lj9C144T6' => 'lonja', 'Lj9C144T7' => 'lonja', 'Manes.07G018000' => 'mes', 'MD00G1077300' => 'mdo', 'MD00G1077400' => 'mdo', 'MD00G1077600' => 'mdo', 'MD00G1077700' => 'mdo', 'MD00G1077800' => 'mdo', 'MD00G1082100' => 'mdo', 'MD00G1082200' => 'mdo', 'MD00G1082300' => 'mdo', 'MD00G1082400' => 'mdo', 'MD00G1082500' => 'mdo', 'MD00G1082600' => 'mdo', 'MD00G1082900' => 'mdo', 'MD02G1111300' => 'mdo', 'MD03G1017100' => 'mdo', 'MD03G1017300' => 'mdo', 'MD03G1017400' => 'mdo', 'MD03G1017700' => 'mdo', 'MD03G1017800' => 'mdo', 'MD03G1018000' => 'mdo', 'MD03G1018100' => 'mdo', 'MD03G1018300' => 'mdo', 'MD03G1019300' => 'mdo', 'MD03G1022100' => 'mdo', 'MD03G1131400' => 'mdo', 'MD03G1178700' => 'mdo', 'MD03G1192900' => 'mdo', 'MD03G1224400' => 'mdo', 'MD03G1227100' => 'mdo', 'MD03G1240600' => 'mdo', 'MD03G1243900' => 'mdo', 'MD03G1244000' => 'mdo', 'MD03G1244200' => 'mdo', 'MD04G1167200' => 'mdo', 'MD05G1078800' => 'mdo', 'MD05G1342800' => 'mdo', 'MD06G1055100' => 'mdo', 'MD09G1166700' => 'mdo', 'MD09G1166800' => 'mdo', 'MD09G1166900' => 'mdo', 'MD10G1316900' => 'mdo', 'MD10G1317500' => 'mdo', 'MD11G1017800' => 'mdo', 'MD11G1017900' => 'mdo', 'MD11G1018100' => 'mdo', 'MD11G1018300' => 'mdo', 'MD11G1018400' => 'mdo', 'MD11G1018500' => 'mdo', 'MD11G1018800' => 'mdo', 'MD11G1018900' => 'mdo', 'MD11G1019000' => 'mdo', 'MD11G1247900' => 'mdo', 'MD11G1248200' => 'mdo', 'MD11G1248600' => 'mdo', 'MD11G1248700' => 'mdo', 'MD11G1249200' => 'mdo', 'MD11G1249300' => 'mdo', 'MD11G1249400' => 'mdo', 'MD13G1259100' => 'mdo', 'MD14G1097700' => 'mdo', 'Migut.N00536' => 'egut', 'MSTRG.12052' => 'ama', 'MSTRG.12803' => 'ama', 'MSTRG.18036' => 'ama', 'MSTRG.25554' => 'ama', 'Oeu019520.1' => 'oeu', 'Oeu019522.1' => 'oeu', 'Oeu019524.1' => 'oeu', 'Oeu019525.1' => 'oeu', 'Oeu019526.1' => 'oeu', 'Oeu019527.1' => 'oeu', 'Oeu021012.1' => 'oeu', 'Oeu023970.1' => 'oeu', 'Oeu023971.1' => 'oeu', 'Oeu060899.2' => 'oeu', 'Oeu060903.1' => 'oeu', 'Oeu060905.1' => 'oeu', 'Os02g0155400' => 'osa', 'Os02g0155600' => 'osa', 'Os02g0155700' => 'osa', 'Os02g0155900' => 'osa', 'Os02g0156200' => 'osa', 'Os02g0156400' => 'osa', 'Os02g0156600' => 'osa', 'Os02g0156633' => 'osa', 'Os02g0156800' => 'osa', 'Os02g0157000' => 'osa', 'Os02g0157100' => 'osa', 'Os02g0157200' => 'osa', 'Os02g0157400' => 'osa', 'Os02g0515125' => 'osa', 'Peaxi162Scf00652g00043' => 'pax', 'Prupe.2G076700' => 'ppe', 'Prupe.2G098300' => 'ppe', 'Prupe.2G098400' => 'ppe', 'Prupe.2G098500' => 'ppe', 'Prupe.2G104600' => 'ppe', 'Prupe.3G024400' => 'ppe', 'Prupe.3G024600' => 'ppe', 'Prupe.3G024700' => 'ppe', 'Prupe.4G161800' => 'ppe', 'Prupe.4G162000' => 'ppe', 'Prupe.4G162500' => 'ppe', 'Prupe.4G162600' => 'ppe', 'Prupe.4G162700' => 'ppe', 'Prupe.4G162800' => 'ppe', 'Prupe.4G162900' => 'ppe', 'Prupe.4G163000' => 'ppe', 'Prupe.4G163100' => 'ppe', 'Prupe.4G163200' => 'ppe', 'Prupe.4G163400' => 'ppe', 'Prupe.4G163500' => 'ppe', 'Prupe.4G163700' => 'ppe', 'Prupe.4G163800' => 'ppe', 'Prupe.4G164200' => 'ppe', 'Prupe.4G168500' => 'ppe', 'Prupe.4G168700' => 'ppe', 'Prupe.4G168800' => 'ppe', 'Prupe.4G169200' => 'ppe', 'Prupe.4G169300' => 'ppe', 'Prupe.4G169500' => 'ppe', 'Prupe.4G169600' => 'ppe', 'Prupe.4G169700' => 'ppe', 'Prupe.4G169800' => 'ppe', 'Prupe.4G169900' => 'ppe', 'Prupe.4G246600' => 'ppe', 'Prupe.4G247100' => 'ppe', 'Prupe.6G009600' => 'ppe', 'Prupe.6G009700' => 'ppe', 'Prupe.6G015500' => 'ppe', 'Prupe.6G015600' => 'ppe', 'Prupe.6G116800' => 'ppe', 'Prupe.8G027500' => 'ppe', 'Prupe.I002800' => 'ppe', 'Prupe.I002900' => 'ppe', 'Psat1g125280' => 'psa', 'RcHm_v2.0_Chr1g0319001' => 'rch', 'RcHm_v2.0_Chr1g0324181' => 'rch', 'RcHm_v2.0_Chr1g0324191' => 'rch', 'RcHm_v2.0_Chr1g0324201' => 'rch', 'RcHm_v2.0_Chr1g0325621' => 'rch', 'RcHm_v2.0_Chr1g0325631' => 'rch', 'RcHm_v2.0_Chr1g0337581' => 'rch', 'RcHm_v2.0_Chr1g0356371' => 'rch', 'RcHm_v2.0_Chr1g0382031' => 'rch', 'RcHm_v2.0_Chr2g0141321' => 'rch', 'RcHm_v2.0_Chr2g0149181' => 'rch', 'RcHm_v2.0_Chr2g0149201' => 'rch', 'RcHm_v2.0_Chr3g0460481' => 'rch', 'RcHm_v2.0_Chr3g0460851' => 'rch', 'RcHm_v2.0_Chr4g0390631' => 'rch', 'RcHm_v2.0_Chr4g0401291' => 'rch', 'RcHm_v2.0_Chr4g0401451' => 'rch', 'RcHm_v2.0_Chr4g0401571' => 'rch', 'RcHm_v2.0_Chr4g0401581' => 'rch', 'RcHm_v2.0_Chr5g0048661' => 'rch', 'RcHm_v2.0_Chr5g0061041' => 'rch', 'RcHm_v2.0_Chr5g0070971' => 'rch', 'RcHm_v2.0_Chr5g0070981' => 'rch', 'RcHm_v2.0_Chr5g0071011' => 'rch', 'RcHm_v2.0_Chr5g0071031' => 'rch', 'RcHm_v2.0_Chr5g0071041' => 'rch', 'RcHm_v2.0_Chr5g0071071' => 'rch', 'RcHm_v2.0_Chr5g0071241' => 'rch', 'RcHm_v2.0_Chr5g0073001' => 'rch', 'RcHm_v2.0_Chr5g0080401' => 'rch', 'RcHm_v2.0_Chr5g0080411' => 'rch', 'RcHm_v2.0_Chr5g0080431' => 'rch', 'RcHm_v2.0_Chr5g0081581' => 'rch', 'RcHm_v2.0_Chr5g0081611' => 'rch', 'RcHm_v2.0_Chr5g0081621' => 'rch', 'RcHm_v2.0_Chr5g0081631' => 'rch', 'RcHm_v2.0_Chr5g0081651' => 'rch', 'RcHm_v2.0_Chr5g0081681' => 'rch', 'RcHm_v2.0_Chr5g0081691' => 'rch', 'RcHm_v2.0_Chr5g0081701' => 'rch', 'RcHm_v2.0_Chr5g0081711' => 'rch', 'RcHm_v2.0_Chr5g0081721' => 'rch', 'RcHm_v2.0_Chr5g0081771' => 'rch', 'RcHm_v2.0_Chr5g0081811' => 'rch', 'RcHm_v2.0_Chr5g0081871' => 'rch', 'RcHm_v2.0_Chr5g0081881' => 'rch', 'RcHm_v2.0_Chr5g0081891' => 'rch', 'RcHm_v2.0_Chr5g0081941' => 'rch', 'RcHm_v2.0_Chr5g0081991' => 'rch', 'RcHm_v2.0_Chr5g0082011' => 'rch', 'RcHm_v2.0_Chr5g0082041' => 'rch', 'RcHm_v2.0_Chr5g0082061' => 'rch', 'RcHm_v2.0_Chr5g0082071' => 'rch', 'RcHm_v2.0_Chr5g0082091' => 'rch', 'RcHm_v2.0_Chr5g0082101' => 'rch', 'RcHm_v2.0_Chr5g0082111' => 'rch', 'RcHm_v2.0_Chr5g0082121' => 'rch', 'RcHm_v2.0_Chr5g0082131' => 'rch', 'RcHm_v2.0_Chr5g0082161' => 'rch', 'RcHm_v2.0_Chr5g0082181' => 'rch', 'RcHm_v2.0_Chr5g0082191' => 'rch', 'RcHm_v2.0_Chr5g0082221' => 'rch', 'RcHm_v2.0_Chr5g0082241' => 'rch', 'RcHm_v2.0_Chr5g0082281' => 'rch', 'RcHm_v2.0_Chr5g0082311' => 'rch', 'RcHm_v2.0_Chr5g0082341' => 'rch', 'RcHm_v2.0_Chr5g0082351' => 'rch', 'RcHm_v2.0_Chr5g0082361' => 'rch', 'RcHm_v2.0_Chr5g0082381' => 'rch', 'RcHm_v2.0_Chr5g0082401' => 'rch', 'RcHm_v2.0_Chr5g0082481' => 'rch', 'RcHm_v2.0_Chr5g0082491' => 'rch', 'RcHm_v2.0_Chr5g0082511' => 'rch', 'RcHm_v2.0_Chr5g0082541' => 'rch', 'RcHm_v2.0_Chr5g0082571' => 'rch', 'RcHm_v2.0_Chr5g0082581' => 'rch', 'RcHm_v2.0_Chr5g0082641' => 'rch', 'RcHm_v2.0_Chr5g0082681' => 'rch', 'RcHm_v2.0_Chr5g0082691' => 'rch', 'RcHm_v2.0_Chr5g0082711' => 'rch', 'RcHm_v2.0_Chr5g0082721' => 'rch', 'RcHm_v2.0_Chr5g0082741' => 'rch', 'RcHm_v2.0_Chr5g0082761' => 'rch', 'RcHm_v2.0_Chr5g0082791' => 'rch', 'RcHm_v2.0_Chr5g0082911' => 'rch', 'RcHm_v2.0_Chr5g0083581' => 'rch', 'RcHm_v2.0_Chr5g0083791' => 'rch', 'RcHm_v2.0_Chr5g0083801' => 'rch', 'RcHm_v2.0_Chr6g0254081' => 'rch', 'RcHm_v2.0_Chr6g0254101' => 'rch', 'RcHm_v2.0_Chr6g0264921' => 'rch', 'RcHm_v2.0_Chr6g0288571' => 'rch', 'RcHm_v2.0_Chr6g0288581' => 'rch', 'RcHm_v2.0_Chr7g0219981' => 'rch', 'SalBow1G5056' => 'sbo', 'SalBow2G2721' => 'sbo', 'SalBow5G3732' => 'sbo', 'SalBow8G0205' => 'sbo', 'Sed0024216' => 'sed', 'SGA_v2.0_scaffold3G01691' => 'sas', 'SGA_v2.0_scaffold3G01708' => 'sas', 'Sp1g15380' => 'spa', 'THA.LOC104798562' => 'tha', 'Thhalv10006928m.g' => 'esa', 'TWI59G1077' => 'twi', 'TWI59G1427' => 'twi', 'VMungo0647G0371' => 'vmu', 'VMungo1127G1468' => 'vmu', 'Zm00001eb011510' => 'zma', 'Zm00001eb100940' => 'zma', 'Zm00001eb207750' => 'zma', 'Zm00001eb424910' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001506' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001506' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001506' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001506' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001506', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '420', 'num_species' => '46' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A07p38470' => 'bna', 'A08p31020' => 'bna', 'Aa31LG7G2050' => 'aar', 'Actinidia16357' => 'ach', 'Ah.08g217430' => 'amhyb', 'Ah.15g094760' => 'amhyb', 'AL1G29490' => 'aly', 'AT1G17240' => 'ath', 'AT1G17250' => 'ath', 'Atru.chr12.1322' => 'acertr', 'Atru.chr12.1324' => 'acertr', 'Atru.chr6.590' => 'acertr', 'Atru.chr8.2121' => 'acertr', 'AUR62001389' => 'cqu', 'AUR62001390' => 'cqu', 'AUR62025605' => 'cqu', 'AUR62025607' => 'cqu', 'AUR62044634' => 'cqu', 'BcaB03g13011' => 'bca', 'BcaB07g34037' => 'bca', 'BcaC05g25653' => 'bca', 'BcaC07g38838' => 'bca', 'BcaC07g41409' => 'bca', 'BcaC07g41431' => 'bca', 'BolC5t30273H' => 'bol', 'BolC8t49404H' => 'bol', 'BolC8t51947H' => 'bol', 'BraA08t35031Z' => 'bra', 'C05p15660' => 'bna', 'C08p17780' => 'bna', 'C08p43980' => 'bna', 'CARHR017820' => 'chi', 'CARHR261670' => 'chi', 'Cc00_g08540' => 'ccan', 'Cc07_g18760' => 'ccan', 'Ciclev10003246m.g' => 'ccl', 'Ciclev10003327m.g' => 'ccl', 'Ciclev10003983m.g' => 'ccl', 'CiPaw.02G055400' => 'cil', 'CiPaw.02G055500' => 'cil', 'CiPaw.02G055600' => 'cil', 'CiPaw.12G005000' => 'cil', 'CiPaw.12G005100' => 'cil', 'CiPaw.12G005300' => 'cil', 'CiPaw.12G005500' => 'cil', 'CiPaw.12G005700' => 'cil', 'CiPaw.13G168900' => 'cil', 'CiPaw.13G169000' => 'cil', 'CiPaw.13G169100' => 'cil', 'CiPaw.13G169200' => 'cil', 'CiPaw.14G126900' => 'cil', 'CiPaw.14G127500' => 'cil', 'CiPaw.14G127900' => 'cil', 'CiPaw.14G128100' => 'cil', 'COL.COLO4_11779' => 'col', 'Dinv36209' => 'din', 'Dinv36211' => 'din', 'EL10Ac7g18247' => 'bvu', 'Eucgr.C04048' => 'egr', 'Eucgr.L00617' => 'egr', 'FAN02G1459' => 'fan', 'FAN02G3970' => 'fan', 'FAN05G4510' => 'fan', 'FAN09G1045' => 'fan', 'FAN11G0089' => 'fan', 'FAN11G0356' => 'fan', 'FAN11G0737' => 'fan', 'FAN11G0797' => 'fan', 'FAN11G0801' => 'fan', 'FAN11G0839' => 'fan', 'FAN11G1318' => 'fan', 'FAN11G1337' => 'fan', 'FAN11G1463' => 'fan', 'FAN11G1557' => 'fan', 'FAN11G1948' => 'fan', 'FAN11G2167' => 'fan', 'FAN11G2215' => 'fan', 'FAN11G2219' => 'fan', 'FAN11G3464' => 'fan', 'FAN14G0819' => 'fan', 'FAN14G3138' => 'fan', 'FAN16G0055' => 'fan', 'FAN16G1850' => 'fan', 'FAN16G3133' => 'fan', 'FAN16G3150' => 'fan', 'FAN16G3500' => 'fan', 'FAN17G1113' => 'fan', 'FAN17G1705' => 'fan', 'FAN18G0990' => 'fan', 'FAN18G1517' => 'fan', 'FAN20G2034' => 'fan', 'FAN21G0338' => 'fan', 'FAN21G0398' => 'fan', 'FAN21G0463' => 'fan', 'FAN21G0758' => 'fan', 'FAN21G0832' => 'fan', 'FAN21G1104' => 'fan', 'FAN21G1410' => 'fan', 'FAN21G2161' => 'fan', 'FAN21G2324' => 'fan', 'FAN21G2334' => 'fan', 'FAN21G2402' => 'fan', 'FAN21G3266' => 'fan', 'FAN21G3398' => 'fan', 'FAN21G3761' => 'fan', 'FAN25G0304' => 'fan', 'FAN25G0712' => 'fan', 'FAN25G0867' => 'fan', 'FAN25G1095' => 'fan', 'FAN25G1606' => 'fan', 'FAN25G2167' => 'fan', 'FAN25G2247' => 'fan', 'FAN25G2420' => 'fan', 'FAN25G2730' => 'fan', 'FAN25G3207' => 'fan', 'FAN25G3351' => 'fan', 'FAN25G3783' => 'fan', 'FvH4_3g20130' => 'fve', 'FvH4_3g38570' => 'fve', 'FvH4_3g39440' => 'fve', 'FvH4_3g39490' => 'fve', 'FvH4_3g44120' => 'fve', 'FvH4_3g44870' => 'fve', 'FvH4_3g44871' => 'fve', 'FvH4_3g44872' => 'fve', 'FvH4_3g44880' => 'fve', 'FvH4_3g44920' => 'fve', 'FvH4_3g44930' => 'fve', 'FvH4_3g44961' => 'fve', 'FvH4_3g45010' => 'fve', 'FvH4_3g45260' => 'fve', 'FvH4_3g45620' => 'fve', 'FvH4_5g12510' => 'fve', 'FvH4_6g36780' => 'fve', 'FvH4_6g36790' => 'fve', 'FvH4_6g36810' => 'fve', 'Gohir.D05G201880' => 'ghi', 'Gorai.005G078900' => 'gra', 'Gorai.009G207700' => 'gra', 'HanXRQChr08g0231561' => 'han', 'HanXRQChr09g0238721' => 'han', 'HanXRQChr09g0238741' => 'han', 'HanXRQChr09g0238751' => 'han', 'HanXRQChr09g0238781' => 'han', 'HanXRQChr09g0238791' => 'han', 'HanXRQChr09g0265391' => 'han', 'HanXRQChr16g0497971' => 'han', 'HanXRQChr16g0497981' => 'han', 'Haze_14215' => 'cav', 'Haze_20041' => 'cav', 'Haze_23027' => 'cav', 'Haze_23090' => 'cav', 'Haze_23091' => 'cav', 'Haze_23094' => 'cav', 'Haze_23095' => 'cav', 'Haze_23096' => 'cav', 'Haze_23097' => 'cav', 'Haze_23098' => 'cav', 'Haze_23099' => 'cav', 'Haze_23100' => 'cav', 'Haze_23683' => 'cav', 'Haze_23684' => 'cav', 'Hma1.2p1_1043F.1_g251220' => 'hma', 'Lj9A144T48' => 'lonja', 'Lj9A144T49' => 'lonja', 'Lj9A144T50' => 'lonja', 'Lj9C144T10' => 'lonja', 'Lj9C144T11' => 'lonja', 'Lj9C144T19' => 'lonja', 'Lj9C144T5' => 'lonja', 'Lj9C144T6' => 'lonja', 'Lj9C144T7' => 'lonja', 'Manes.07G018000' => 'mes', 'MD00G1077300' => 'mdo', 'MD00G1077400' => 'mdo', 'MD00G1077600' => 'mdo', 'MD00G1077700' => 'mdo', 'MD00G1077800' => 'mdo', 'MD00G1082100' => 'mdo', 'MD00G1082200' => 'mdo', 'MD00G1082300' => 'mdo', 'MD00G1082400' => 'mdo', 'MD00G1082500' => 'mdo', 'MD00G1082600' => 'mdo', 'MD00G1082900' => 'mdo', 'MD02G1111300' => 'mdo', 'MD03G1017100' => 'mdo', 'MD03G1017300' => 'mdo', 'MD03G1017400' => 'mdo', 'MD03G1017700' => 'mdo', 'MD03G1017800' => 'mdo', 'MD03G1018000' => 'mdo', 'MD03G1018100' => 'mdo', 'MD03G1018300' => 'mdo', 'MD03G1019300' => 'mdo', 'MD03G1022100' => 'mdo', 'MD03G1131400' => 'mdo', 'MD03G1178700' => 'mdo', 'MD03G1192900' => 'mdo', 'MD03G1224400' => 'mdo', 'MD03G1227100' => 'mdo', 'MD03G1240600' => 'mdo', 'MD03G1243900' => 'mdo', 'MD03G1244000' => 'mdo', 'MD03G1244200' => 'mdo', 'MD04G1167200' => 'mdo', 'MD05G1078800' => 'mdo', 'MD05G1342800' => 'mdo', 'MD06G1055100' => 'mdo', 'MD09G1166700' => 'mdo', 'MD09G1166800' => 'mdo', 'MD09G1166900' => 'mdo', 'MD10G1316900' => 'mdo', 'MD10G1317500' => 'mdo', 'MD11G1017800' => 'mdo', 'MD11G1017900' => 'mdo', 'MD11G1018100' => 'mdo', 'MD11G1018300' => 'mdo', 'MD11G1018400' => 'mdo', 'MD11G1018500' => 'mdo', 'MD11G1018800' => 'mdo', 'MD11G1018900' => 'mdo', 'MD11G1019000' => 'mdo', 'MD11G1247900' => 'mdo', 'MD11G1248200' => 'mdo', 'MD11G1248600' => 'mdo', 'MD11G1248700' => 'mdo', 'MD11G1249200' => 'mdo', 'MD11G1249300' => 'mdo', 'MD11G1249400' => 'mdo', 'MD13G1259100' => 'mdo', 'MD14G1097700' => 'mdo', 'Migut.N00536' => 'egut', 'MSTRG.12052' => 'ama', 'MSTRG.12803' => 'ama', 'MSTRG.18036' => 'ama', 'MSTRG.25554' => 'ama', 'Oeu019520.1' => 'oeu', 'Oeu019522.1' => 'oeu', 'Oeu019524.1' => 'oeu', 'Oeu019525.1' => 'oeu', 'Oeu019526.1' => 'oeu', 'Oeu019527.1' => 'oeu', 'Oeu021012.1' => 'oeu', 'Oeu023970.1' => 'oeu', 'Oeu023971.1' => 'oeu', 'Oeu060899.2' => 'oeu', 'Oeu060903.1' => 'oeu', 'Oeu060905.1' => 'oeu', 'Os02g0155400' => 'osa', 'Os02g0155600' => 'osa', 'Os02g0155700' => 'osa', 'Os02g0155900' => 'osa', 'Os02g0156200' => 'osa', 'Os02g0156400' => 'osa', 'Os02g0156600' => 'osa', 'Os02g0156633' => 'osa', 'Os02g0156800' => 'osa', 'Os02g0157000' => 'osa', 'Os02g0157100' => 'osa', 'Os02g0157200' => 'osa', 'Os02g0157400' => 'osa', 'Os02g0515125' => 'osa', 'Peaxi162Scf00652g00043' => 'pax', 'Prupe.2G076700' => 'ppe', 'Prupe.2G098300' => 'ppe', 'Prupe.2G098400' => 'ppe', 'Prupe.2G098500' => 'ppe', 'Prupe.2G104600' => 'ppe', 'Prupe.3G024400' => 'ppe', 'Prupe.3G024600' => 'ppe', 'Prupe.3G024700' => 'ppe', 'Prupe.4G161800' => 'ppe', 'Prupe.4G162000' => 'ppe', 'Prupe.4G162500' => 'ppe', 'Prupe.4G162600' => 'ppe', 'Prupe.4G162700' => 'ppe', 'Prupe.4G162800' => 'ppe', 'Prupe.4G162900' => 'ppe', 'Prupe.4G163000' => 'ppe', 'Prupe.4G163100' => 'ppe', 'Prupe.4G163200' => 'ppe', 'Prupe.4G163400' => 'ppe', 'Prupe.4G163500' => 'ppe', 'Prupe.4G163700' => 'ppe', 'Prupe.4G163800' => 'ppe', 'Prupe.4G164200' => 'ppe', 'Prupe.4G168500' => 'ppe', 'Prupe.4G168700' => 'ppe', 'Prupe.4G168800' => 'ppe', 'Prupe.4G169200' => 'ppe', 'Prupe.4G169300' => 'ppe', 'Prupe.4G169500' => 'ppe', 'Prupe.4G169600' => 'ppe', 'Prupe.4G169700' => 'ppe', 'Prupe.4G169800' => 'ppe', 'Prupe.4G169900' => 'ppe', 'Prupe.4G246600' => 'ppe', 'Prupe.4G247100' => 'ppe', 'Prupe.6G009600' => 'ppe', 'Prupe.6G009700' => 'ppe', 'Prupe.6G015500' => 'ppe', 'Prupe.6G015600' => 'ppe', 'Prupe.6G116800' => 'ppe', 'Prupe.8G027500' => 'ppe', 'Prupe.I002800' => 'ppe', 'Prupe.I002900' => 'ppe', 'Psat1g125280' => 'psa', 'RcHm_v2.0_Chr1g0319001' => 'rch', 'RcHm_v2.0_Chr1g0324181' => 'rch', 'RcHm_v2.0_Chr1g0324191' => 'rch', 'RcHm_v2.0_Chr1g0324201' => 'rch', 'RcHm_v2.0_Chr1g0325621' => 'rch', 'RcHm_v2.0_Chr1g0325631' => 'rch', 'RcHm_v2.0_Chr1g0337581' => 'rch', 'RcHm_v2.0_Chr1g0356371' => 'rch', 'RcHm_v2.0_Chr1g0382031' => 'rch', 'RcHm_v2.0_Chr2g0141321' => 'rch', 'RcHm_v2.0_Chr2g0149181' => 'rch', 'RcHm_v2.0_Chr2g0149201' => 'rch', 'RcHm_v2.0_Chr3g0460481' => 'rch', 'RcHm_v2.0_Chr3g0460851' => 'rch', 'RcHm_v2.0_Chr4g0390631' => 'rch', 'RcHm_v2.0_Chr4g0401291' => 'rch', 'RcHm_v2.0_Chr4g0401451' => 'rch', 'RcHm_v2.0_Chr4g0401571' => 'rch', 'RcHm_v2.0_Chr4g0401581' => 'rch', 'RcHm_v2.0_Chr5g0048661' => 'rch', 'RcHm_v2.0_Chr5g0061041' => 'rch', 'RcHm_v2.0_Chr5g0070971' => 'rch', 'RcHm_v2.0_Chr5g0070981' => 'rch', 'RcHm_v2.0_Chr5g0071011' => 'rch', 'RcHm_v2.0_Chr5g0071031' => 'rch', 'RcHm_v2.0_Chr5g0071041' => 'rch', 'RcHm_v2.0_Chr5g0071071' => 'rch', 'RcHm_v2.0_Chr5g0071241' => 'rch', 'RcHm_v2.0_Chr5g0073001' => 'rch', 'RcHm_v2.0_Chr5g0080401' => 'rch', 'RcHm_v2.0_Chr5g0080411' => 'rch', 'RcHm_v2.0_Chr5g0080431' => 'rch', 'RcHm_v2.0_Chr5g0081581' => 'rch', 'RcHm_v2.0_Chr5g0081611' => 'rch', 'RcHm_v2.0_Chr5g0081621' => 'rch', 'RcHm_v2.0_Chr5g0081631' => 'rch', 'RcHm_v2.0_Chr5g0081651' => 'rch', 'RcHm_v2.0_Chr5g0081681' => 'rch', 'RcHm_v2.0_Chr5g0081691' => 'rch', 'RcHm_v2.0_Chr5g0081701' => 'rch', 'RcHm_v2.0_Chr5g0081711' => 'rch', 'RcHm_v2.0_Chr5g0081721' => 'rch', 'RcHm_v2.0_Chr5g0081771' => 'rch', 'RcHm_v2.0_Chr5g0081811' => 'rch', 'RcHm_v2.0_Chr5g0081871' => 'rch', 'RcHm_v2.0_Chr5g0081881' => 'rch', 'RcHm_v2.0_Chr5g0081891' => 'rch', 'RcHm_v2.0_Chr5g0081941' => 'rch', 'RcHm_v2.0_Chr5g0081991' => 'rch', 'RcHm_v2.0_Chr5g0082011' => 'rch', 'RcHm_v2.0_Chr5g0082041' => 'rch', 'RcHm_v2.0_Chr5g0082061' => 'rch', 'RcHm_v2.0_Chr5g0082071' => 'rch', 'RcHm_v2.0_Chr5g0082091' => 'rch', 'RcHm_v2.0_Chr5g0082101' => 'rch', 'RcHm_v2.0_Chr5g0082111' => 'rch', 'RcHm_v2.0_Chr5g0082121' => 'rch', 'RcHm_v2.0_Chr5g0082131' => 'rch', 'RcHm_v2.0_Chr5g0082161' => 'rch', 'RcHm_v2.0_Chr5g0082181' => 'rch', 'RcHm_v2.0_Chr5g0082191' => 'rch', 'RcHm_v2.0_Chr5g0082221' => 'rch', 'RcHm_v2.0_Chr5g0082241' => 'rch', 'RcHm_v2.0_Chr5g0082281' => 'rch', 'RcHm_v2.0_Chr5g0082311' => 'rch', 'RcHm_v2.0_Chr5g0082341' => 'rch', 'RcHm_v2.0_Chr5g0082351' => 'rch', 'RcHm_v2.0_Chr5g0082361' => 'rch', 'RcHm_v2.0_Chr5g0082381' => 'rch', 'RcHm_v2.0_Chr5g0082401' => 'rch', 'RcHm_v2.0_Chr5g0082481' => 'rch', 'RcHm_v2.0_Chr5g0082491' => 'rch', 'RcHm_v2.0_Chr5g0082511' => 'rch', 'RcHm_v2.0_Chr5g0082541' => 'rch', 'RcHm_v2.0_Chr5g0082571' => 'rch', 'RcHm_v2.0_Chr5g0082581' => 'rch', 'RcHm_v2.0_Chr5g0082641' => 'rch', 'RcHm_v2.0_Chr5g0082681' => 'rch', 'RcHm_v2.0_Chr5g0082691' => 'rch', 'RcHm_v2.0_Chr5g0082711' => 'rch', 'RcHm_v2.0_Chr5g0082721' => 'rch', 'RcHm_v2.0_Chr5g0082741' => 'rch', 'RcHm_v2.0_Chr5g0082761' => 'rch', 'RcHm_v2.0_Chr5g0082791' => 'rch', 'RcHm_v2.0_Chr5g0082911' => 'rch', 'RcHm_v2.0_Chr5g0083581' => 'rch', 'RcHm_v2.0_Chr5g0083791' => 'rch', 'RcHm_v2.0_Chr5g0083801' => 'rch', 'RcHm_v2.0_Chr6g0254081' => 'rch', 'RcHm_v2.0_Chr6g0254101' => 'rch', 'RcHm_v2.0_Chr6g0264921' => 'rch', 'RcHm_v2.0_Chr6g0288571' => 'rch', 'RcHm_v2.0_Chr6g0288581' => 'rch', 'RcHm_v2.0_Chr7g0219981' => 'rch', 'SalBow1G5056' => 'sbo', 'SalBow2G2721' => 'sbo', 'SalBow5G3732' => 'sbo', 'SalBow8G0205' => 'sbo', 'Sed0024216' => 'sed', 'SGA_v2.0_scaffold3G01691' => 'sas', 'SGA_v2.0_scaffold3G01708' => 'sas', 'Sp1g15380' => 'spa', 'THA.LOC104798562' => 'tha', 'Thhalv10006928m.g' => 'esa', 'TWI59G1077' => 'twi', 'TWI59G1427' => 'twi', 'VMungo0647G0371' => 'vmu', 'VMungo1127G1468' => 'vmu', 'Zm00001eb011510' => 'zma', 'Zm00001eb100940' => 'zma', 'Zm00001eb207750' => 'zma', 'Zm00001eb424910' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001506', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001506' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001506', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '420', 'num_species' => '46' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001506' ) ), 'genes' => array( 'A07p38470' => 'bna', 'A08p31020' => 'bna', 'Aa31LG7G2050' => 'aar', 'Actinidia16357' => 'ach', 'Ah.08g217430' => 'amhyb', 'Ah.15g094760' => 'amhyb', 'AL1G29490' => 'aly', 'AT1G17240' => 'ath', 'AT1G17250' => 'ath', 'Atru.chr12.1322' => 'acertr', 'Atru.chr12.1324' => 'acertr', 'Atru.chr6.590' => 'acertr', 'Atru.chr8.2121' => 'acertr', 'AUR62001389' => 'cqu', 'AUR62001390' => 'cqu', 'AUR62025605' => 'cqu', 'AUR62025607' => 'cqu', 'AUR62044634' => 'cqu', 'BcaB03g13011' => 'bca', 'BcaB07g34037' => 'bca', 'BcaC05g25653' => 'bca', 'BcaC07g38838' => 'bca', 'BcaC07g41409' => 'bca', 'BcaC07g41431' => 'bca', 'BolC5t30273H' => 'bol', 'BolC8t49404H' => 'bol', 'BolC8t51947H' => 'bol', 'BraA08t35031Z' => 'bra', 'C05p15660' => 'bna', 'C08p17780' => 'bna', 'C08p43980' => 'bna', 'CARHR017820' => 'chi', 'CARHR261670' => 'chi', 'Cc00_g08540' => 'ccan', 'Cc07_g18760' => 'ccan', 'Ciclev10003246m.g' => 'ccl', 'Ciclev10003327m.g' => 'ccl', 'Ciclev10003983m.g' => 'ccl', 'CiPaw.02G055400' => 'cil', 'CiPaw.02G055500' => 'cil', 'CiPaw.02G055600' => 'cil', 'CiPaw.12G005000' => 'cil', 'CiPaw.12G005100' => 'cil', 'CiPaw.12G005300' => 'cil', 'CiPaw.12G005500' => 'cil', 'CiPaw.12G005700' => 'cil', 'CiPaw.13G168900' => 'cil', 'CiPaw.13G169000' => 'cil', 'CiPaw.13G169100' => 'cil', 'CiPaw.13G169200' => 'cil', 'CiPaw.14G126900' => 'cil', 'CiPaw.14G127500' => 'cil', 'CiPaw.14G127900' => 'cil', 'CiPaw.14G128100' => 'cil', 'COL.COLO4_11779' => 'col', 'Dinv36209' => 'din', 'Dinv36211' => 'din', 'EL10Ac7g18247' => 'bvu', 'Eucgr.C04048' => 'egr', 'Eucgr.L00617' => 'egr', 'FAN02G1459' => 'fan', 'FAN02G3970' => 'fan', 'FAN05G4510' => 'fan', 'FAN09G1045' => 'fan', 'FAN11G0089' => 'fan', 'FAN11G0356' => 'fan', 'FAN11G0737' => 'fan', 'FAN11G0797' => 'fan', 'FAN11G0801' => 'fan', 'FAN11G0839' => 'fan', 'FAN11G1318' => 'fan', 'FAN11G1337' => 'fan', 'FAN11G1463' => 'fan', 'FAN11G1557' => 'fan', 'FAN11G1948' => 'fan', 'FAN11G2167' => 'fan', 'FAN11G2215' => 'fan', 'FAN11G2219' => 'fan', 'FAN11G3464' => 'fan', 'FAN14G0819' => 'fan', 'FAN14G3138' => 'fan', 'FAN16G0055' => 'fan', 'FAN16G1850' => 'fan', 'FAN16G3133' => 'fan', 'FAN16G3150' => 'fan', 'FAN16G3500' => 'fan', 'FAN17G1113' => 'fan', 'FAN17G1705' => 'fan', 'FAN18G0990' => 'fan', 'FAN18G1517' => 'fan', 'FAN20G2034' => 'fan', 'FAN21G0338' => 'fan', 'FAN21G0398' => 'fan', 'FAN21G0463' => 'fan', 'FAN21G0758' => 'fan', 'FAN21G0832' => 'fan', 'FAN21G1104' => 'fan', 'FAN21G1410' => 'fan', 'FAN21G2161' => 'fan', 'FAN21G2324' => 'fan', 'FAN21G2334' => 'fan', 'FAN21G2402' => 'fan', 'FAN21G3266' => 'fan', 'FAN21G3398' => 'fan', 'FAN21G3761' => 'fan', 'FAN25G0304' => 'fan', 'FAN25G0712' => 'fan', 'FAN25G0867' => 'fan', 'FAN25G1095' => 'fan', 'FAN25G1606' => 'fan', 'FAN25G2167' => 'fan', 'FAN25G2247' => 'fan', 'FAN25G2420' => 'fan', 'FAN25G2730' => 'fan', 'FAN25G3207' => 'fan', 'FAN25G3351' => 'fan', 'FAN25G3783' => 'fan', 'FvH4_3g20130' => 'fve', 'FvH4_3g38570' => 'fve', 'FvH4_3g39440' => 'fve', 'FvH4_3g39490' => 'fve', 'FvH4_3g44120' => 'fve', 'FvH4_3g44870' => 'fve', 'FvH4_3g44871' => 'fve', 'FvH4_3g44872' => 'fve', 'FvH4_3g44880' => 'fve', 'FvH4_3g44920' => 'fve', 'FvH4_3g44930' => 'fve', 'FvH4_3g44961' => 'fve', 'FvH4_3g45010' => 'fve', 'FvH4_3g45260' => 'fve', 'FvH4_3g45620' => 'fve', 'FvH4_5g12510' => 'fve', 'FvH4_6g36780' => 'fve', 'FvH4_6g36790' => 'fve', 'FvH4_6g36810' => 'fve', 'Gohir.D05G201880' => 'ghi', 'Gorai.005G078900' => 'gra', 'Gorai.009G207700' => 'gra', 'HanXRQChr08g0231561' => 'han', 'HanXRQChr09g0238721' => 'han', 'HanXRQChr09g0238741' => 'han', 'HanXRQChr09g0238751' => 'han', 'HanXRQChr09g0238781' => 'han', 'HanXRQChr09g0238791' => 'han', 'HanXRQChr09g0265391' => 'han', 'HanXRQChr16g0497971' => 'han', 'HanXRQChr16g0497981' => 'han', 'Haze_14215' => 'cav', 'Haze_20041' => 'cav', 'Haze_23027' => 'cav', 'Haze_23090' => 'cav', 'Haze_23091' => 'cav', 'Haze_23094' => 'cav', 'Haze_23095' => 'cav', 'Haze_23096' => 'cav', 'Haze_23097' => 'cav', 'Haze_23098' => 'cav', 'Haze_23099' => 'cav', 'Haze_23100' => 'cav', 'Haze_23683' => 'cav', 'Haze_23684' => 'cav', 'Hma1.2p1_1043F.1_g251220' => 'hma', 'Lj9A144T48' => 'lonja', 'Lj9A144T49' => 'lonja', 'Lj9A144T50' => 'lonja', 'Lj9C144T10' => 'lonja', 'Lj9C144T11' => 'lonja', 'Lj9C144T19' => 'lonja', 'Lj9C144T5' => 'lonja', 'Lj9C144T6' => 'lonja', 'Lj9C144T7' => 'lonja', 'Manes.07G018000' => 'mes', 'MD00G1077300' => 'mdo', 'MD00G1077400' => 'mdo', 'MD00G1077600' => 'mdo', 'MD00G1077700' => 'mdo', 'MD00G1077800' => 'mdo', 'MD00G1082100' => 'mdo', 'MD00G1082200' => 'mdo', 'MD00G1082300' => 'mdo', 'MD00G1082400' => 'mdo', 'MD00G1082500' => 'mdo', 'MD00G1082600' => 'mdo', 'MD00G1082900' => 'mdo', 'MD02G1111300' => 'mdo', 'MD03G1017100' => 'mdo', 'MD03G1017300' => 'mdo', 'MD03G1017400' => 'mdo', 'MD03G1017700' => 'mdo', 'MD03G1017800' => 'mdo', 'MD03G1018000' => 'mdo', 'MD03G1018100' => 'mdo', 'MD03G1018300' => 'mdo', 'MD03G1019300' => 'mdo', 'MD03G1022100' => 'mdo', 'MD03G1131400' => 'mdo', 'MD03G1178700' => 'mdo', 'MD03G1192900' => 'mdo', 'MD03G1224400' => 'mdo', 'MD03G1227100' => 'mdo', 'MD03G1240600' => 'mdo', 'MD03G1243900' => 'mdo', 'MD03G1244000' => 'mdo', 'MD03G1244200' => 'mdo', 'MD04G1167200' => 'mdo', 'MD05G1078800' => 'mdo', 'MD05G1342800' => 'mdo', 'MD06G1055100' => 'mdo', 'MD09G1166700' => 'mdo', 'MD09G1166800' => 'mdo', 'MD09G1166900' => 'mdo', 'MD10G1316900' => 'mdo', 'MD10G1317500' => 'mdo', 'MD11G1017800' => 'mdo', 'MD11G1017900' => 'mdo', 'MD11G1018100' => 'mdo', 'MD11G1018300' => 'mdo', 'MD11G1018400' => 'mdo', 'MD11G1018500' => 'mdo', 'MD11G1018800' => 'mdo', 'MD11G1018900' => 'mdo', 'MD11G1019000' => 'mdo', 'MD11G1247900' => 'mdo', 'MD11G1248200' => 'mdo', 'MD11G1248600' => 'mdo', 'MD11G1248700' => 'mdo', 'MD11G1249200' => 'mdo', 'MD11G1249300' => 'mdo', 'MD11G1249400' => 'mdo', 'MD13G1259100' => 'mdo', 'MD14G1097700' => 'mdo', 'Migut.N00536' => 'egut', 'MSTRG.12052' => 'ama', 'MSTRG.12803' => 'ama', 'MSTRG.18036' => 'ama', 'MSTRG.25554' => 'ama', 'Oeu019520.1' => 'oeu', 'Oeu019522.1' => 'oeu', 'Oeu019524.1' => 'oeu', 'Oeu019525.1' => 'oeu', 'Oeu019526.1' => 'oeu', 'Oeu019527.1' => 'oeu', 'Oeu021012.1' => 'oeu', 'Oeu023970.1' => 'oeu', 'Oeu023971.1' => 'oeu', 'Oeu060899.2' => 'oeu', 'Oeu060903.1' => 'oeu', 'Oeu060905.1' => 'oeu', 'Os02g0155400' => 'osa', 'Os02g0155600' => 'osa', 'Os02g0155700' => 'osa', 'Os02g0155900' => 'osa', 'Os02g0156200' => 'osa', 'Os02g0156400' => 'osa', 'Os02g0156600' => 'osa', 'Os02g0156633' => 'osa', 'Os02g0156800' => 'osa', 'Os02g0157000' => 'osa', 'Os02g0157100' => 'osa', 'Os02g0157200' => 'osa', 'Os02g0157400' => 'osa', 'Os02g0515125' => 'osa', 'Peaxi162Scf00652g00043' => 'pax', 'Prupe.2G076700' => 'ppe', 'Prupe.2G098300' => 'ppe', 'Prupe.2G098400' => 'ppe', 'Prupe.2G098500' => 'ppe', 'Prupe.2G104600' => 'ppe', 'Prupe.3G024400' => 'ppe', 'Prupe.3G024600' => 'ppe', 'Prupe.3G024700' => 'ppe', 'Prupe.4G161800' => 'ppe', 'Prupe.4G162000' => 'ppe', 'Prupe.4G162500' => 'ppe', 'Prupe.4G162600' => 'ppe', 'Prupe.4G162700' => 'ppe', 'Prupe.4G162800' => 'ppe', 'Prupe.4G162900' => 'ppe', 'Prupe.4G163000' => 'ppe', 'Prupe.4G163100' => 'ppe', 'Prupe.4G163200' => 'ppe', 'Prupe.4G163400' => 'ppe', 'Prupe.4G163500' => 'ppe', 'Prupe.4G163700' => 'ppe', 'Prupe.4G163800' => 'ppe', 'Prupe.4G164200' => 'ppe', 'Prupe.4G168500' => 'ppe', 'Prupe.4G168700' => 'ppe', 'Prupe.4G168800' => 'ppe', 'Prupe.4G169200' => 'ppe', 'Prupe.4G169300' => 'ppe', 'Prupe.4G169500' => 'ppe', 'Prupe.4G169600' => 'ppe', 'Prupe.4G169700' => 'ppe', 'Prupe.4G169800' => 'ppe', 'Prupe.4G169900' => 'ppe', 'Prupe.4G246600' => 'ppe', 'Prupe.4G247100' => 'ppe', 'Prupe.6G009600' => 'ppe', 'Prupe.6G009700' => 'ppe', 'Prupe.6G015500' => 'ppe', 'Prupe.6G015600' => 'ppe', 'Prupe.6G116800' => 'ppe', 'Prupe.8G027500' => 'ppe', 'Prupe.I002800' => 'ppe', 'Prupe.I002900' => 'ppe', 'Psat1g125280' => 'psa', 'RcHm_v2.0_Chr1g0319001' => 'rch', 'RcHm_v2.0_Chr1g0324181' => 'rch', 'RcHm_v2.0_Chr1g0324191' => 'rch', 'RcHm_v2.0_Chr1g0324201' => 'rch', 'RcHm_v2.0_Chr1g0325621' => 'rch', 'RcHm_v2.0_Chr1g0325631' => 'rch', 'RcHm_v2.0_Chr1g0337581' => 'rch', 'RcHm_v2.0_Chr1g0356371' => 'rch', 'RcHm_v2.0_Chr1g0382031' => 'rch', 'RcHm_v2.0_Chr2g0141321' => 'rch', 'RcHm_v2.0_Chr2g0149181' => 'rch', 'RcHm_v2.0_Chr2g0149201' => 'rch', 'RcHm_v2.0_Chr3g0460481' => 'rch', 'RcHm_v2.0_Chr3g0460851' => 'rch', 'RcHm_v2.0_Chr4g0390631' => 'rch', 'RcHm_v2.0_Chr4g0401291' => 'rch', 'RcHm_v2.0_Chr4g0401451' => 'rch', 'RcHm_v2.0_Chr4g0401571' => 'rch', 'RcHm_v2.0_Chr4g0401581' => 'rch', 'RcHm_v2.0_Chr5g0048661' => 'rch', 'RcHm_v2.0_Chr5g0061041' => 'rch', 'RcHm_v2.0_Chr5g0070971' => 'rch', 'RcHm_v2.0_Chr5g0070981' => 'rch', 'RcHm_v2.0_Chr5g0071011' => 'rch', 'RcHm_v2.0_Chr5g0071031' => 'rch', 'RcHm_v2.0_Chr5g0071041' => 'rch', 'RcHm_v2.0_Chr5g0071071' => 'rch', 'RcHm_v2.0_Chr5g0071241' => 'rch', 'RcHm_v2.0_Chr5g0073001' => 'rch', 'RcHm_v2.0_Chr5g0080401' => 'rch', 'RcHm_v2.0_Chr5g0080411' => 'rch', 'RcHm_v2.0_Chr5g0080431' => 'rch', 'RcHm_v2.0_Chr5g0081581' => 'rch', 'RcHm_v2.0_Chr5g0081611' => 'rch', 'RcHm_v2.0_Chr5g0081621' => 'rch', 'RcHm_v2.0_Chr5g0081631' => 'rch', 'RcHm_v2.0_Chr5g0081651' => 'rch', 'RcHm_v2.0_Chr5g0081681' => 'rch', 'RcHm_v2.0_Chr5g0081691' => 'rch', 'RcHm_v2.0_Chr5g0081701' => 'rch', 'RcHm_v2.0_Chr5g0081711' => 'rch', 'RcHm_v2.0_Chr5g0081721' => 'rch', 'RcHm_v2.0_Chr5g0081771' => 'rch', 'RcHm_v2.0_Chr5g0081811' => 'rch', 'RcHm_v2.0_Chr5g0081871' => 'rch', 'RcHm_v2.0_Chr5g0081881' => 'rch', 'RcHm_v2.0_Chr5g0081891' => 'rch', 'RcHm_v2.0_Chr5g0081941' => 'rch', 'RcHm_v2.0_Chr5g0081991' => 'rch', 'RcHm_v2.0_Chr5g0082011' => 'rch', 'RcHm_v2.0_Chr5g0082041' => 'rch', 'RcHm_v2.0_Chr5g0082061' => 'rch', 'RcHm_v2.0_Chr5g0082071' => 'rch', 'RcHm_v2.0_Chr5g0082091' => 'rch', 'RcHm_v2.0_Chr5g0082101' => 'rch', 'RcHm_v2.0_Chr5g0082111' => 'rch', 'RcHm_v2.0_Chr5g0082121' => 'rch', 'RcHm_v2.0_Chr5g0082131' => 'rch', 'RcHm_v2.0_Chr5g0082161' => 'rch', 'RcHm_v2.0_Chr5g0082181' => 'rch', 'RcHm_v2.0_Chr5g0082191' => 'rch', 'RcHm_v2.0_Chr5g0082221' => 'rch', 'RcHm_v2.0_Chr5g0082241' => 'rch', 'RcHm_v2.0_Chr5g0082281' => 'rch', 'RcHm_v2.0_Chr5g0082311' => 'rch', 'RcHm_v2.0_Chr5g0082341' => 'rch', 'RcHm_v2.0_Chr5g0082351' => 'rch', 'RcHm_v2.0_Chr5g0082361' => 'rch', 'RcHm_v2.0_Chr5g0082381' => 'rch', 'RcHm_v2.0_Chr5g0082401' => 'rch', 'RcHm_v2.0_Chr5g0082481' => 'rch', 'RcHm_v2.0_Chr5g0082491' => 'rch', 'RcHm_v2.0_Chr5g0082511' => 'rch', 'RcHm_v2.0_Chr5g0082541' => 'rch', 'RcHm_v2.0_Chr5g0082571' => 'rch', 'RcHm_v2.0_Chr5g0082581' => 'rch', 'RcHm_v2.0_Chr5g0082641' => 'rch', 'RcHm_v2.0_Chr5g0082681' => 'rch', 'RcHm_v2.0_Chr5g0082691' => 'rch', 'RcHm_v2.0_Chr5g0082711' => 'rch', 'RcHm_v2.0_Chr5g0082721' => 'rch', 'RcHm_v2.0_Chr5g0082741' => 'rch', 'RcHm_v2.0_Chr5g0082761' => 'rch', 'RcHm_v2.0_Chr5g0082791' => 'rch', 'RcHm_v2.0_Chr5g0082911' => 'rch', 'RcHm_v2.0_Chr5g0083581' => 'rch', 'RcHm_v2.0_Chr5g0083791' => 'rch', 'RcHm_v2.0_Chr5g0083801' => 'rch', 'RcHm_v2.0_Chr6g0254081' => 'rch', 'RcHm_v2.0_Chr6g0254101' => 'rch', 'RcHm_v2.0_Chr6g0264921' => 'rch', 'RcHm_v2.0_Chr6g0288571' => 'rch', 'RcHm_v2.0_Chr6g0288581' => 'rch', 'RcHm_v2.0_Chr7g0219981' => 'rch', 'SalBow1G5056' => 'sbo', 'SalBow2G2721' => 'sbo', 'SalBow5G3732' => 'sbo', 'SalBow8G0205' => 'sbo', 'Sed0024216' => 'sed', 'SGA_v2.0_scaffold3G01691' => 'sas', 'SGA_v2.0_scaffold3G01708' => 'sas', 'Sp1g15380' => 'spa', 'THA.LOC104798562' => 'tha', 'Thhalv10006928m.g' => 'esa', 'TWI59G1077' => 'twi', 'TWI59G1427' => 'twi', 'VMungo0647G0371' => 'vmu', 'VMungo1127G1468' => 'vmu', 'Zm00001eb011510' => 'zma', 'Zm00001eb100940' => 'zma', 'Zm00001eb207750' => 'zma', 'Zm00001eb424910' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001506' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001506' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001506' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001506' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151