Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001319', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '475', 'num_species' => '26' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A05p21870' => 'bna', 'A05p22140' => 'bna', 'A05p22230' => 'bna', 'A05p22420' => 'bna', 'A05p22730' => 'bna', 'A05p22740' => 'bna', 'A05p22750' => 'bna', 'A05p22760' => 'bna', 'A06p23760' => 'bna', 'A06p23900' => 'bna', 'A06p24020' => 'bna', 'A06p24050' => 'bna', 'A06p24430' => 'bna', 'A06p24440' => 'bna', 'A06p24850' => 'bna', 'A06p24920' => 'bna', 'A06p25410' => 'bna', 'A06p25480' => 'bna', 'A06p25560' => 'bna', 'A06p25670' => 'bna', 'A06p26000' => 'bna', 'A06p26080' => 'bna', 'A06p26510' => 'bna', 'A09p30660' => 'bna', 'A09p30670' => 'bna', 'Atru.chr10.44' => 'acertr', 'Atru.chr10.52' => 'acertr', 'Atru.chr12.1863' => 'acertr', 'BcaB04g16894' => 'bca', 'BcaC06g35652' => 'bca', 'BcaC06g35655' => 'bca', 'BcaC07g37373' => 'bca', 'BcaNung05730' => 'bca', 'BcaNung06258' => 'bca', 'BcaNung06496' => 'bca', 'BcaNung07277' => 'bca', 'BNapus_Darmor_BZH_scaffold_65p00080' => 'bna', 'BraA05t21122Z' => 'bra', 'BraA09t38623Z' => 'bra', 'BraA09t38635Z' => 'bra', 'BraSC65t46599Z' => 'bra', 'C02p52880' => 'bna', 'C02p52990' => 'bna', 'C07p00030' => 'bna', 'C07p12440' => 'bna', 'CARHR111740' => 'chi', 'Carub.0002s0966' => 'cru', 'Carub.0026s0006' => 'cru', 'Ca_14542_v3' => 'car', 'Ca_26109_v3' => 'car', 'Cc00_g25870' => 'ccan', 'Cfa020971' => 'cfa', 'Ciclev10029524m.g' => 'ccl', 'Ciclev10029531m.g' => 'ccl', 'CiPaw.15G100800' => 'cil', 'CiPaw.15G104600' => 'cil', 'CiPaw.15G105500' => 'cil', 'CiPaw.15G106700' => 'cil', 'CiPaw.15G110600' => 'cil', 'Duzib160G0894' => 'dzi', 'Duzib170G0310' => 'dzi', 'EL10As19g24172' => 'bvu', 'EL10As19g24179' => 'bvu', 'EL10As7g23709' => 'bvu', 'EL10As7g23710' => 'bvu', 'EL10As7g23712' => 'bvu', 'Glyma.13G011150' => 'gma', 'Glyma.13G013700' => 'gma', 'Glyma.U007802' => 'gma', 'Lj2g0014759' => 'lja', 'Lj6g0022573' => 'lja', 'LjContig00006g0020595' => 'lja', 'LjContig00371g0024011' => 'lja', 'LjContig00488g0020088' => 'lja', 'Manes.S000981' => 'mes', 'Manes.S007521' => 'mes', 'Manes.S014388' => 'mes', 'Manes.S017332' => 'mes', 'Manes.S022390' => 'mes', 'Manes.S022616' => 'mes', 'Manes.S024416' => 'mes', 'Manes.S024816' => 'mes', 'Manes.S026016' => 'mes', 'Manes.S027952' => 'mes', 'Manes.S030952' => 'mes', 'Manes.S032316' => 'mes', 'Manes.S032716' => 'mes', 'Manes.S034016' => 'mes', 'Manes.S034516' => 'mes', 'Manes.S042716' => 'mes', 'Manes.S044316' => 'mes', 'Manes.S044716' => 'mes', 'Manes.S048016' => 'mes', 'Manes.S048516' => 'mes', 'Manes.S049516' => 'mes', 'Manes.S053516' => 'mes', 'Manes.S055616' => 'mes', 'Migut.A01090' => 'egut', 'Migut.A01183' => 'egut', 'Migut.A01185' => 'egut', 'Migut.A01195' => 'egut', 'Migut.A01197' => 'egut', 'Migut.A01210' => 'egut', 'Migut.A01214' => 'egut', 'Migut.A01216' => 'egut', 'Migut.A01219' => 'egut', 'Migut.A01222' => 'egut', 'Migut.A01224' => 'egut', 'Migut.A01225' => 'egut', 'Migut.A01227' => 'egut', 'Migut.A01230' => 'egut', 'Migut.A01231' => 'egut', 'Migut.A01236' => 'egut', 'Migut.A01238' => 'egut', 'Migut.A01243' => 'egut', 'Migut.A01244' => 'egut', 'Migut.C00300' => 'egut', 'Migut.C00304' => 'egut', 'Migut.C00307' => 'egut', 'Migut.C00309' => 'egut', 'Migut.C00310' => 'egut', 'Migut.G00886' => 'egut', 'Migut.G00887' => 'egut', 'Migut.G00892' => 'egut', 'Migut.G00895' => 'egut', 'Migut.O00540' => 'egut', 'Migut.O00593' => 'egut', 'Migut.O00639' => 'egut', 'Migut.O00649' => 'egut', 'Migut.O00650' => 'egut', 'Migut.O00654' => 'egut', 'Nn038s41644' => 'nnu', 'Nn038s41666' => 'nnu', 'Nn040s41714' => 'nnu', 'Nn040s41736' => 'nnu', 'Nn040s41759' => 'nnu', 'Nn040s41782' => 'nnu', 'Nn046s41834' => 'nnu', 'Nn046s41857' => 'nnu', 'Nn046s41903' => 'nnu', 'Nn058s41950' => 'nnu', 'Nn058s41972' => 'nnu', 'Nn058s41995' => 'nnu', 'Nn059s42013' => 'nnu', 'Nn059s42036' => 'nnu', 'Nn059s42059' => 'nnu', 'Nn061s42083' => 'nnu', 'Nn061s42106' => 'nnu', 'Nn061s42129' => 'nnu', 'Nn062s42139' => 'nnu', 'Nn062s42162' => 'nnu', 'Nn062s42184' => 'nnu', 'Nn062s42205' => 'nnu', 'Nn067s42243' => 'nnu', 'Nn067s42265' => 'nnu', 'Nn067s42288' => 'nnu', 'Nn069s42306' => 'nnu', 'Nn069s42330' => 'nnu', 'Nn069s42353' => 'nnu', 'Nn072s42412' => 'nnu', 'Nn072s42434' => 'nnu', 'Nn072s42456' => 'nnu', 'Nn076s42483' => 'nnu', 'Nn076s42506' => 'nnu', 'Nn076s42528' => 'nnu', 'Nn077s42548' => 'nnu', 'Nn077s42571' => 'nnu', 'Nn078s42625' => 'nnu', 'Nn078s42647' => 'nnu', 'Nn078s42670' => 'nnu', 'Nn085s42691' => 'nnu', 'Nn085s42715' => 'nnu', 'Nn085s42723' => 'nnu', 'Nn085s42744' => 'nnu', 'Nn087s42767' => 'nnu', 'Nn087s42789' => 'nnu', 'Nn087s42811' => 'nnu', 'Nn090s42829' => 'nnu', 'Nn090s42852' => 'nnu', 'Nn094s42903' => 'nnu', 'Nn094s42905' => 'nnu', 'Nn094s42928' => 'nnu', 'Nn095s42960' => 'nnu', 'Nn095s42982' => 'nnu', 'Nn095s43004' => 'nnu', 'Nn097s43021' => 'nnu', 'Nn097s43045' => 'nnu', 'Nn097s43067' => 'nnu', 'Nn098s43077' => 'nnu', 'Nn098s43100' => 'nnu', 'Nn104s43142' => 'nnu', 'Nn104s43144' => 'nnu', 'Nn104s43167' => 'nnu', 'Nn105s43198' => 'nnu', 'Nn105s43220' => 'nnu', 'Nn108s43265' => 'nnu', 'Nn108s43287' => 'nnu', 'Nn110s43325' => 'nnu', 'Nn110s43348' => 'nnu', 'Nn116s43391' => 'nnu', 'Nn116s43412' => 'nnu', 'Nn119s43435' => 'nnu', 'Nn119s43458' => 'nnu', 'Nn122s43480' => 'nnu', 'Nn122s43503' => 'nnu', 'Nn122s43526' => 'nnu', 'Nn124s43533' => 'nnu', 'Nn124s43556' => 'nnu', 'Nn124s43578' => 'nnu', 'Nn125s43581' => 'nnu', 'Nn125s43605' => 'nnu', 'Nn125s43627' => 'nnu', 'Nn126s43636' => 'nnu', 'Nn126s43659' => 'nnu', 'Nn126s43681' => 'nnu', 'Nn129s43711' => 'nnu', 'Nn129s43734' => 'nnu', 'Nn130s43760' => 'nnu', 'Nn130s43782' => 'nnu', 'Nn136s43815' => 'nnu', 'Nn136s43838' => 'nnu', 'Nn137s43873' => 'nnu', 'Nn137s43896' => 'nnu', 'Nn139s43918' => 'nnu', 'Nn139s43940' => 'nnu', 'Nn141s43972' => 'nnu', 'Nn142s44009' => 'nnu', 'Nn142s44031' => 'nnu', 'Nn143s44062' => 'nnu', 'Nn143s44084' => 'nnu', 'Nn148s44117' => 'nnu', 'Nn148s44139' => 'nnu', 'Nn151s44157' => 'nnu', 'Nn151s44179' => 'nnu', 'Nn152s44203' => 'nnu', 'Nn152s44225' => 'nnu', 'Nn153s44234' => 'nnu', 'Nn153s44257' => 'nnu', 'Nn157s44314' => 'nnu', 'Nn157s44336' => 'nnu', 'Nn159s44360' => 'nnu', 'Nn159s44383' => 'nnu', 'Nn165s44407' => 'nnu', 'Nn165s44429' => 'nnu', 'Nn167s44457' => 'nnu', 'Nn167s44479' => 'nnu', 'Nn175s44513' => 'nnu', 'Nn175s44527' => 'nnu', 'Nn177s44543' => 'nnu', 'Nn177s44566' => 'nnu', 'Nn178s44589' => 'nnu', 'Nn178s44612' => 'nnu', 'Nn185s44631' => 'nnu', 'Nn185s44654' => 'nnu', 'Nn188s44678' => 'nnu', 'Nn188s44700' => 'nnu', 'Nn189s44714' => 'nnu', 'Nn189s44737' => 'nnu', 'Nn190s44751' => 'nnu', 'Nn190s44774' => 'nnu', 'Nn194s44792' => 'nnu', 'Nn194s44816' => 'nnu', 'Nn195s44835' => 'nnu', 'Nn196s44851' => 'nnu', 'Nn196s44873' => 'nnu', 'Nn1g00031' => 'nnu', 'Nn200s44898' => 'nnu', 'Nn201s44929' => 'nnu', 'Nn201s44953' => 'nnu', 'Nn202s44970' => 'nnu', 'Nn202s44992' => 'nnu', 'Nn203s45003' => 'nnu', 'Nn203s45026' => 'nnu', 'Nn204s45052' => 'nnu', 'Nn207s45074' => 'nnu', 'Nn207s45096' => 'nnu', 'Nn208s45127' => 'nnu', 'Nn209s45139' => 'nnu', 'Nn209s45161' => 'nnu', 'Nn210s45171' => 'nnu', 'Nn210s45193' => 'nnu', 'Nn213s45230' => 'nnu', 'Nn217s45254' => 'nnu', 'Nn217s45279' => 'nnu', 'Nn220s45310' => 'nnu', 'Nn221s45332' => 'nnu', 'Nn222s45352' => 'nnu', 'Nn222s45376' => 'nnu', 'Nn223s45384' => 'nnu', 'Nn223s45406' => 'nnu', 'Nn224s45434' => 'nnu', 'Nn227s45465' => 'nnu', 'Nn229s45495' => 'nnu', 'Nn230s45539' => 'nnu', 'Nn236s45578' => 'nnu', 'Nn237s45609' => 'nnu', 'Nn238s45634' => 'nnu', 'Nn240s45670' => 'nnu', 'Nn242s45698' => 'nnu', 'Nn244s45739' => 'nnu', 'Nn245s45753' => 'nnu', 'Nn245s45775' => 'nnu', 'Nn246s45793' => 'nnu', 'Nn247s45802' => 'nnu', 'Nn247s45826' => 'nnu', 'Nn250s45848' => 'nnu', 'Nn251s45860' => 'nnu', 'Nn252s45895' => 'nnu', 'Nn260s45912' => 'nnu', 'Nn260s45935' => 'nnu', 'Nn267s45973' => 'nnu', 'Nn268s45997' => 'nnu', 'Nn272s46029' => 'nnu', 'Nn273s46041' => 'nnu', 'Nn275s46074' => 'nnu', 'Nn282s46083' => 'nnu', 'Nn284s46112' => 'nnu', 'Nn288s46165' => 'nnu', 'Nn289s46171' => 'nnu', 'Nn294s46210' => 'nnu', 'Nn299s46214' => 'nnu', 'Nn2g16035' => 'nnu', 'Nn306s46251' => 'nnu', 'Nn307s46263' => 'nnu', 'Nn310s46288' => 'nnu', 'Nn315s46312' => 'nnu', 'Nn318s46318' => 'nnu', 'Nn327s46359' => 'nnu', 'Nn329s46370' => 'nnu', 'Nn338s46400' => 'nnu', 'Nn341s46424' => 'nnu', 'Nn344s46452' => 'nnu', 'Nn352s46487' => 'nnu', 'Nn356s46503' => 'nnu', 'Nn365s46515' => 'nnu', 'Nn376s46547' => 'nnu', 'Nn3g16070' => 'nnu', 'Nn3g16104' => 'nnu', 'Nn3g20492' => 'nnu', 'Nn3g20517' => 'nnu', 'Nn3g20539' => 'nnu', 'Nn3g20842' => 'nnu', 'Nn408s46577' => 'nnu', 'Nn422s46603' => 'nnu', 'Nn437s46674' => 'nnu', 'Nn444s46696' => 'nnu', 'Nn4g25097' => 'nnu', 'Nn4g25906' => 'nnu', 'Nn5g26986' => 'nnu', 'Nn5g27006' => 'nnu', 'Nn5g27010' => 'nnu', 'Nn5g27030' => 'nnu', 'Nn5g27319' => 'nnu', 'Nn5g31172' => 'nnu', 'Nn5g31215' => 'nnu', 'Nn5g31245' => 'nnu', 'Nn5g31268' => 'nnu', 'Nn5g31286' => 'nnu', 'Nn5g31305' => 'nnu', 'Nn5g31324' => 'nnu', 'Nn5g31351' => 'nnu', 'Nn5g31380' => 'nnu', 'Nn5g31402' => 'nnu', 'Nn5g31422' => 'nnu', 'Nn5g31445' => 'nnu', 'Nn5g31458' => 'nnu', 'Nn5g31478' => 'nnu', 'Nn6g32484' => 'nnu', 'Nn6g32486' => 'nnu', 'Nn6g32509' => 'nnu', 'Nn6g32529' => 'nnu', 'Nn6g32551' => 'nnu', 'Nn6g32573' => 'nnu', 'Nn6g32595' => 'nnu', 'Nn6g32596' => 'nnu', 'Nn6g32624' => 'nnu', 'Nn6g32651' => 'nnu', 'Nn6g32672' => 'nnu', 'Nn6g32695' => 'nnu', 'Nn6g32720' => 'nnu', 'Nn6g32730' => 'nnu', 'Nn6g32754' => 'nnu', 'Nn6g32764' => 'nnu', 'Nn6g32780' => 'nnu', 'Nn6g32781' => 'nnu', 'Nn6g32802' => 'nnu', 'Nn6g32814' => 'nnu', 'Nn6g32848' => 'nnu', 'Nn6g32862' => 'nnu', 'Nn6g32883' => 'nnu', 'Nn6g32910' => 'nnu', 'Nn6g32933' => 'nnu', 'Nn6g32956' => 'nnu', 'Nn6g32975' => 'nnu', 'Nn6g32993' => 'nnu', 'Nn6g33031' => 'nnu', 'Nn6g33053' => 'nnu', 'Nn6g33061' => 'nnu', 'Nn6g33081' => 'nnu', 'Nn6g33101' => 'nnu', 'Nn6g33110' => 'nnu', 'Nn6g33129' => 'nnu', 'Nn6g33145' => 'nnu', 'Nn6g33164' => 'nnu', 'Nn6g33178' => 'nnu', 'Nn6g33216' => 'nnu', 'Nn6g33235' => 'nnu', 'Nn6g33239' => 'nnu', 'Nn8g40311' => 'nnu', 'Nn8g40335' => 'nnu', 'Nn8g41314' => 'nnu', 'Nn8g41338' => 'nnu', 'Oeu008745.1' => 'oeu', 'PGSC0003DMG400019038' => 'stu', 'PGSC0003DMG400035518' => 'stu', 'PGSC0003DMG400043383' => 'stu', 'Phvul.002G055275' => 'pvu', 'Phvul.002G055425' => 'pvu', 'Phvul.003G000434' => 'pvu', 'Phvul.003G090301' => 'pvu', 'Phvul.L002175' => 'pvu', 'Potri.008G223900' => 'ptr', 'Potri.008G224102' => 'ptr', 'Potri.008G224138' => 'ptr', 'Potri.008G224165' => 'ptr', 'Potri.008G224201' => 'ptr', 'Potri.008G224264' => 'ptr', 'Potri.008G224282' => 'ptr', 'Potri.008G224301' => 'ptr', 'Potri.008G224319' => 'ptr', 'Potri.008G224346' => 'ptr', 'Potri.008G224364' => 'ptr', 'Potri.008G224400' => 'ptr', 'Potri.008G224601' => 'ptr', 'Potri.008G225001' => 'ptr', 'Potri.008G225201' => 'ptr', 'Potri.008G225401' => 'ptr', 'Potri.014G185372' => 'ptr', 'Potri.014G185444' => 'ptr', 'Potri.014G185660' => 'ptr', 'Potri.014G185876' => 'ptr', 'Potri.014G186020' => 'ptr', 'Potri.014G186164' => 'ptr', 'Potri.014G186380' => 'ptr', 'Potri.014G186524' => 'ptr', 'Potri.014G186600' => 'ptr', 'Potri.T124505' => 'ptr', 'Sopen00g004120' => 'spe', 'Sopen00g006740' => 'spe', 'Sopen06g001500' => 'spe', 'Thhalv10028274m.g' => 'esa', 'Thhalv10028342m.g' => 'esa', 'unitig_124.g30880' => 'ugi', 'unitig_127.g34227' => 'ugi', 'unitig_135.g35479' => 'ugi', 'unitig_139.g29582' => 'ugi', 'unitig_143.g32398' => 'ugi', 'unitig_145.g32340' => 'ugi', 'unitig_145.g32367' => 'ugi', 'unitig_175.g35439' => 'ugi', 'unitig_579.g34805' => 'ugi', 'unitig_581.g33717' => 'ugi', 'unitig_583.g34786' => 'ugi', 'unitig_659.g33186' => 'ugi', 'unitig_669.g33613' => 'ugi', 'unitig_681.g32559' => 'ugi', 'unitig_685.g33134' => 'ugi', 'unitig_721.g34551' => 'ugi', 'unitig_805.g34440' => 'ugi', 'unitig_809.g34388' => 'ugi', 'unitig_830.g33044' => 'ugi', 'unitig_881.g33004' => 'ugi', 'unitig_882.g34274' => 'ugi', 'unitig_96.g33476' => 'ugi', 'Zm00001eb439550' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001319', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001319' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001319', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '475', 'num_species' => '26' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001319' ) ), 'genes' => array( 'A05p21870' => 'bna', 'A05p22140' => 'bna', 'A05p22230' => 'bna', 'A05p22420' => 'bna', 'A05p22730' => 'bna', 'A05p22740' => 'bna', 'A05p22750' => 'bna', 'A05p22760' => 'bna', 'A06p23760' => 'bna', 'A06p23900' => 'bna', 'A06p24020' => 'bna', 'A06p24050' => 'bna', 'A06p24430' => 'bna', 'A06p24440' => 'bna', 'A06p24850' => 'bna', 'A06p24920' => 'bna', 'A06p25410' => 'bna', 'A06p25480' => 'bna', 'A06p25560' => 'bna', 'A06p25670' => 'bna', 'A06p26000' => 'bna', 'A06p26080' => 'bna', 'A06p26510' => 'bna', 'A09p30660' => 'bna', 'A09p30670' => 'bna', 'Atru.chr10.44' => 'acertr', 'Atru.chr10.52' => 'acertr', 'Atru.chr12.1863' => 'acertr', 'BcaB04g16894' => 'bca', 'BcaC06g35652' => 'bca', 'BcaC06g35655' => 'bca', 'BcaC07g37373' => 'bca', 'BcaNung05730' => 'bca', 'BcaNung06258' => 'bca', 'BcaNung06496' => 'bca', 'BcaNung07277' => 'bca', 'BNapus_Darmor_BZH_scaffold_65p00080' => 'bna', 'BraA05t21122Z' => 'bra', 'BraA09t38623Z' => 'bra', 'BraA09t38635Z' => 'bra', 'BraSC65t46599Z' => 'bra', 'C02p52880' => 'bna', 'C02p52990' => 'bna', 'C07p00030' => 'bna', 'C07p12440' => 'bna', 'CARHR111740' => 'chi', 'Carub.0002s0966' => 'cru', 'Carub.0026s0006' => 'cru', 'Ca_14542_v3' => 'car', 'Ca_26109_v3' => 'car', 'Cc00_g25870' => 'ccan', 'Cfa020971' => 'cfa', 'Ciclev10029524m.g' => 'ccl', 'Ciclev10029531m.g' => 'ccl', 'CiPaw.15G100800' => 'cil', 'CiPaw.15G104600' => 'cil', 'CiPaw.15G105500' => 'cil', 'CiPaw.15G106700' => 'cil', 'CiPaw.15G110600' => 'cil', 'Duzib160G0894' => 'dzi', 'Duzib170G0310' => 'dzi', 'EL10As19g24172' => 'bvu', 'EL10As19g24179' => 'bvu', 'EL10As7g23709' => 'bvu', 'EL10As7g23710' => 'bvu', 'EL10As7g23712' => 'bvu', 'Glyma.13G011150' => 'gma', 'Glyma.13G013700' => 'gma', 'Glyma.U007802' => 'gma', 'Lj2g0014759' => 'lja', 'Lj6g0022573' => 'lja', 'LjContig00006g0020595' => 'lja', 'LjContig00371g0024011' => 'lja', 'LjContig00488g0020088' => 'lja', 'Manes.S000981' => 'mes', 'Manes.S007521' => 'mes', 'Manes.S014388' => 'mes', 'Manes.S017332' => 'mes', 'Manes.S022390' => 'mes', 'Manes.S022616' => 'mes', 'Manes.S024416' => 'mes', 'Manes.S024816' => 'mes', 'Manes.S026016' => 'mes', 'Manes.S027952' => 'mes', 'Manes.S030952' => 'mes', 'Manes.S032316' => 'mes', 'Manes.S032716' => 'mes', 'Manes.S034016' => 'mes', 'Manes.S034516' => 'mes', 'Manes.S042716' => 'mes', 'Manes.S044316' => 'mes', 'Manes.S044716' => 'mes', 'Manes.S048016' => 'mes', 'Manes.S048516' => 'mes', 'Manes.S049516' => 'mes', 'Manes.S053516' => 'mes', 'Manes.S055616' => 'mes', 'Migut.A01090' => 'egut', 'Migut.A01183' => 'egut', 'Migut.A01185' => 'egut', 'Migut.A01195' => 'egut', 'Migut.A01197' => 'egut', 'Migut.A01210' => 'egut', 'Migut.A01214' => 'egut', 'Migut.A01216' => 'egut', 'Migut.A01219' => 'egut', 'Migut.A01222' => 'egut', 'Migut.A01224' => 'egut', 'Migut.A01225' => 'egut', 'Migut.A01227' => 'egut', 'Migut.A01230' => 'egut', 'Migut.A01231' => 'egut', 'Migut.A01236' => 'egut', 'Migut.A01238' => 'egut', 'Migut.A01243' => 'egut', 'Migut.A01244' => 'egut', 'Migut.C00300' => 'egut', 'Migut.C00304' => 'egut', 'Migut.C00307' => 'egut', 'Migut.C00309' => 'egut', 'Migut.C00310' => 'egut', 'Migut.G00886' => 'egut', 'Migut.G00887' => 'egut', 'Migut.G00892' => 'egut', 'Migut.G00895' => 'egut', 'Migut.O00540' => 'egut', 'Migut.O00593' => 'egut', 'Migut.O00639' => 'egut', 'Migut.O00649' => 'egut', 'Migut.O00650' => 'egut', 'Migut.O00654' => 'egut', 'Nn038s41644' => 'nnu', 'Nn038s41666' => 'nnu', 'Nn040s41714' => 'nnu', 'Nn040s41736' => 'nnu', 'Nn040s41759' => 'nnu', 'Nn040s41782' => 'nnu', 'Nn046s41834' => 'nnu', 'Nn046s41857' => 'nnu', 'Nn046s41903' => 'nnu', 'Nn058s41950' => 'nnu', 'Nn058s41972' => 'nnu', 'Nn058s41995' => 'nnu', 'Nn059s42013' => 'nnu', 'Nn059s42036' => 'nnu', 'Nn059s42059' => 'nnu', 'Nn061s42083' => 'nnu', 'Nn061s42106' => 'nnu', 'Nn061s42129' => 'nnu', 'Nn062s42139' => 'nnu', 'Nn062s42162' => 'nnu', 'Nn062s42184' => 'nnu', 'Nn062s42205' => 'nnu', 'Nn067s42243' => 'nnu', 'Nn067s42265' => 'nnu', 'Nn067s42288' => 'nnu', 'Nn069s42306' => 'nnu', 'Nn069s42330' => 'nnu', 'Nn069s42353' => 'nnu', 'Nn072s42412' => 'nnu', 'Nn072s42434' => 'nnu', 'Nn072s42456' => 'nnu', 'Nn076s42483' => 'nnu', 'Nn076s42506' => 'nnu', 'Nn076s42528' => 'nnu', 'Nn077s42548' => 'nnu', 'Nn077s42571' => 'nnu', 'Nn078s42625' => 'nnu', 'Nn078s42647' => 'nnu', 'Nn078s42670' => 'nnu', 'Nn085s42691' => 'nnu', 'Nn085s42715' => 'nnu', 'Nn085s42723' => 'nnu', 'Nn085s42744' => 'nnu', 'Nn087s42767' => 'nnu', 'Nn087s42789' => 'nnu', 'Nn087s42811' => 'nnu', 'Nn090s42829' => 'nnu', 'Nn090s42852' => 'nnu', 'Nn094s42903' => 'nnu', 'Nn094s42905' => 'nnu', 'Nn094s42928' => 'nnu', 'Nn095s42960' => 'nnu', 'Nn095s42982' => 'nnu', 'Nn095s43004' => 'nnu', 'Nn097s43021' => 'nnu', 'Nn097s43045' => 'nnu', 'Nn097s43067' => 'nnu', 'Nn098s43077' => 'nnu', 'Nn098s43100' => 'nnu', 'Nn104s43142' => 'nnu', 'Nn104s43144' => 'nnu', 'Nn104s43167' => 'nnu', 'Nn105s43198' => 'nnu', 'Nn105s43220' => 'nnu', 'Nn108s43265' => 'nnu', 'Nn108s43287' => 'nnu', 'Nn110s43325' => 'nnu', 'Nn110s43348' => 'nnu', 'Nn116s43391' => 'nnu', 'Nn116s43412' => 'nnu', 'Nn119s43435' => 'nnu', 'Nn119s43458' => 'nnu', 'Nn122s43480' => 'nnu', 'Nn122s43503' => 'nnu', 'Nn122s43526' => 'nnu', 'Nn124s43533' => 'nnu', 'Nn124s43556' => 'nnu', 'Nn124s43578' => 'nnu', 'Nn125s43581' => 'nnu', 'Nn125s43605' => 'nnu', 'Nn125s43627' => 'nnu', 'Nn126s43636' => 'nnu', 'Nn126s43659' => 'nnu', 'Nn126s43681' => 'nnu', 'Nn129s43711' => 'nnu', 'Nn129s43734' => 'nnu', 'Nn130s43760' => 'nnu', 'Nn130s43782' => 'nnu', 'Nn136s43815' => 'nnu', 'Nn136s43838' => 'nnu', 'Nn137s43873' => 'nnu', 'Nn137s43896' => 'nnu', 'Nn139s43918' => 'nnu', 'Nn139s43940' => 'nnu', 'Nn141s43972' => 'nnu', 'Nn142s44009' => 'nnu', 'Nn142s44031' => 'nnu', 'Nn143s44062' => 'nnu', 'Nn143s44084' => 'nnu', 'Nn148s44117' => 'nnu', 'Nn148s44139' => 'nnu', 'Nn151s44157' => 'nnu', 'Nn151s44179' => 'nnu', 'Nn152s44203' => 'nnu', 'Nn152s44225' => 'nnu', 'Nn153s44234' => 'nnu', 'Nn153s44257' => 'nnu', 'Nn157s44314' => 'nnu', 'Nn157s44336' => 'nnu', 'Nn159s44360' => 'nnu', 'Nn159s44383' => 'nnu', 'Nn165s44407' => 'nnu', 'Nn165s44429' => 'nnu', 'Nn167s44457' => 'nnu', 'Nn167s44479' => 'nnu', 'Nn175s44513' => 'nnu', 'Nn175s44527' => 'nnu', 'Nn177s44543' => 'nnu', 'Nn177s44566' => 'nnu', 'Nn178s44589' => 'nnu', 'Nn178s44612' => 'nnu', 'Nn185s44631' => 'nnu', 'Nn185s44654' => 'nnu', 'Nn188s44678' => 'nnu', 'Nn188s44700' => 'nnu', 'Nn189s44714' => 'nnu', 'Nn189s44737' => 'nnu', 'Nn190s44751' => 'nnu', 'Nn190s44774' => 'nnu', 'Nn194s44792' => 'nnu', 'Nn194s44816' => 'nnu', 'Nn195s44835' => 'nnu', 'Nn196s44851' => 'nnu', 'Nn196s44873' => 'nnu', 'Nn1g00031' => 'nnu', 'Nn200s44898' => 'nnu', 'Nn201s44929' => 'nnu', 'Nn201s44953' => 'nnu', 'Nn202s44970' => 'nnu', 'Nn202s44992' => 'nnu', 'Nn203s45003' => 'nnu', 'Nn203s45026' => 'nnu', 'Nn204s45052' => 'nnu', 'Nn207s45074' => 'nnu', 'Nn207s45096' => 'nnu', 'Nn208s45127' => 'nnu', 'Nn209s45139' => 'nnu', 'Nn209s45161' => 'nnu', 'Nn210s45171' => 'nnu', 'Nn210s45193' => 'nnu', 'Nn213s45230' => 'nnu', 'Nn217s45254' => 'nnu', 'Nn217s45279' => 'nnu', 'Nn220s45310' => 'nnu', 'Nn221s45332' => 'nnu', 'Nn222s45352' => 'nnu', 'Nn222s45376' => 'nnu', 'Nn223s45384' => 'nnu', 'Nn223s45406' => 'nnu', 'Nn224s45434' => 'nnu', 'Nn227s45465' => 'nnu', 'Nn229s45495' => 'nnu', 'Nn230s45539' => 'nnu', 'Nn236s45578' => 'nnu', 'Nn237s45609' => 'nnu', 'Nn238s45634' => 'nnu', 'Nn240s45670' => 'nnu', 'Nn242s45698' => 'nnu', 'Nn244s45739' => 'nnu', 'Nn245s45753' => 'nnu', 'Nn245s45775' => 'nnu', 'Nn246s45793' => 'nnu', 'Nn247s45802' => 'nnu', 'Nn247s45826' => 'nnu', 'Nn250s45848' => 'nnu', 'Nn251s45860' => 'nnu', 'Nn252s45895' => 'nnu', 'Nn260s45912' => 'nnu', 'Nn260s45935' => 'nnu', 'Nn267s45973' => 'nnu', 'Nn268s45997' => 'nnu', 'Nn272s46029' => 'nnu', 'Nn273s46041' => 'nnu', 'Nn275s46074' => 'nnu', 'Nn282s46083' => 'nnu', 'Nn284s46112' => 'nnu', 'Nn288s46165' => 'nnu', 'Nn289s46171' => 'nnu', 'Nn294s46210' => 'nnu', 'Nn299s46214' => 'nnu', 'Nn2g16035' => 'nnu', 'Nn306s46251' => 'nnu', 'Nn307s46263' => 'nnu', 'Nn310s46288' => 'nnu', 'Nn315s46312' => 'nnu', 'Nn318s46318' => 'nnu', 'Nn327s46359' => 'nnu', 'Nn329s46370' => 'nnu', 'Nn338s46400' => 'nnu', 'Nn341s46424' => 'nnu', 'Nn344s46452' => 'nnu', 'Nn352s46487' => 'nnu', 'Nn356s46503' => 'nnu', 'Nn365s46515' => 'nnu', 'Nn376s46547' => 'nnu', 'Nn3g16070' => 'nnu', 'Nn3g16104' => 'nnu', 'Nn3g20492' => 'nnu', 'Nn3g20517' => 'nnu', 'Nn3g20539' => 'nnu', 'Nn3g20842' => 'nnu', 'Nn408s46577' => 'nnu', 'Nn422s46603' => 'nnu', 'Nn437s46674' => 'nnu', 'Nn444s46696' => 'nnu', 'Nn4g25097' => 'nnu', 'Nn4g25906' => 'nnu', 'Nn5g26986' => 'nnu', 'Nn5g27006' => 'nnu', 'Nn5g27010' => 'nnu', 'Nn5g27030' => 'nnu', 'Nn5g27319' => 'nnu', 'Nn5g31172' => 'nnu', 'Nn5g31215' => 'nnu', 'Nn5g31245' => 'nnu', 'Nn5g31268' => 'nnu', 'Nn5g31286' => 'nnu', 'Nn5g31305' => 'nnu', 'Nn5g31324' => 'nnu', 'Nn5g31351' => 'nnu', 'Nn5g31380' => 'nnu', 'Nn5g31402' => 'nnu', 'Nn5g31422' => 'nnu', 'Nn5g31445' => 'nnu', 'Nn5g31458' => 'nnu', 'Nn5g31478' => 'nnu', 'Nn6g32484' => 'nnu', 'Nn6g32486' => 'nnu', 'Nn6g32509' => 'nnu', 'Nn6g32529' => 'nnu', 'Nn6g32551' => 'nnu', 'Nn6g32573' => 'nnu', 'Nn6g32595' => 'nnu', 'Nn6g32596' => 'nnu', 'Nn6g32624' => 'nnu', 'Nn6g32651' => 'nnu', 'Nn6g32672' => 'nnu', 'Nn6g32695' => 'nnu', 'Nn6g32720' => 'nnu', 'Nn6g32730' => 'nnu', 'Nn6g32754' => 'nnu', 'Nn6g32764' => 'nnu', 'Nn6g32780' => 'nnu', 'Nn6g32781' => 'nnu', 'Nn6g32802' => 'nnu', 'Nn6g32814' => 'nnu', 'Nn6g32848' => 'nnu', 'Nn6g32862' => 'nnu', 'Nn6g32883' => 'nnu', 'Nn6g32910' => 'nnu', 'Nn6g32933' => 'nnu', 'Nn6g32956' => 'nnu', 'Nn6g32975' => 'nnu', 'Nn6g32993' => 'nnu', 'Nn6g33031' => 'nnu', 'Nn6g33053' => 'nnu', 'Nn6g33061' => 'nnu', 'Nn6g33081' => 'nnu', 'Nn6g33101' => 'nnu', 'Nn6g33110' => 'nnu', 'Nn6g33129' => 'nnu', 'Nn6g33145' => 'nnu', 'Nn6g33164' => 'nnu', 'Nn6g33178' => 'nnu', 'Nn6g33216' => 'nnu', 'Nn6g33235' => 'nnu', 'Nn6g33239' => 'nnu', 'Nn8g40311' => 'nnu', 'Nn8g40335' => 'nnu', 'Nn8g41314' => 'nnu', 'Nn8g41338' => 'nnu', 'Oeu008745.1' => 'oeu', 'PGSC0003DMG400019038' => 'stu', 'PGSC0003DMG400035518' => 'stu', 'PGSC0003DMG400043383' => 'stu', 'Phvul.002G055275' => 'pvu', 'Phvul.002G055425' => 'pvu', 'Phvul.003G000434' => 'pvu', 'Phvul.003G090301' => 'pvu', 'Phvul.L002175' => 'pvu', 'Potri.008G223900' => 'ptr', 'Potri.008G224102' => 'ptr', 'Potri.008G224138' => 'ptr', 'Potri.008G224165' => 'ptr', 'Potri.008G224201' => 'ptr', 'Potri.008G224264' => 'ptr', 'Potri.008G224282' => 'ptr', 'Potri.008G224301' => 'ptr', 'Potri.008G224319' => 'ptr', 'Potri.008G224346' => 'ptr', 'Potri.008G224364' => 'ptr', 'Potri.008G224400' => 'ptr', 'Potri.008G224601' => 'ptr', 'Potri.008G225001' => 'ptr', 'Potri.008G225201' => 'ptr', 'Potri.008G225401' => 'ptr', 'Potri.014G185372' => 'ptr', 'Potri.014G185444' => 'ptr', 'Potri.014G185660' => 'ptr', 'Potri.014G185876' => 'ptr', 'Potri.014G186020' => 'ptr', 'Potri.014G186164' => 'ptr', 'Potri.014G186380' => 'ptr', 'Potri.014G186524' => 'ptr', 'Potri.014G186600' => 'ptr', 'Potri.T124505' => 'ptr', 'Sopen00g004120' => 'spe', 'Sopen00g006740' => 'spe', 'Sopen06g001500' => 'spe', 'Thhalv10028274m.g' => 'esa', 'Thhalv10028342m.g' => 'esa', 'unitig_124.g30880' => 'ugi', 'unitig_127.g34227' => 'ugi', 'unitig_135.g35479' => 'ugi', 'unitig_139.g29582' => 'ugi', 'unitig_143.g32398' => 'ugi', 'unitig_145.g32340' => 'ugi', 'unitig_145.g32367' => 'ugi', 'unitig_175.g35439' => 'ugi', 'unitig_579.g34805' => 'ugi', 'unitig_581.g33717' => 'ugi', 'unitig_583.g34786' => 'ugi', 'unitig_659.g33186' => 'ugi', 'unitig_669.g33613' => 'ugi', 'unitig_681.g32559' => 'ugi', 'unitig_685.g33134' => 'ugi', 'unitig_721.g34551' => 'ugi', 'unitig_805.g34440' => 'ugi', 'unitig_809.g34388' => 'ugi', 'unitig_830.g33044' => 'ugi', 'unitig_881.g33004' => 'ugi', 'unitig_882.g34274' => 'ugi', 'unitig_96.g33476' => 'ugi', 'Zm00001eb439550' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001319' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001319' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001319' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001319' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001319', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '475', 'num_species' => '26' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A05p21870' => 'bna', 'A05p22140' => 'bna', 'A05p22230' => 'bna', 'A05p22420' => 'bna', 'A05p22730' => 'bna', 'A05p22740' => 'bna', 'A05p22750' => 'bna', 'A05p22760' => 'bna', 'A06p23760' => 'bna', 'A06p23900' => 'bna', 'A06p24020' => 'bna', 'A06p24050' => 'bna', 'A06p24430' => 'bna', 'A06p24440' => 'bna', 'A06p24850' => 'bna', 'A06p24920' => 'bna', 'A06p25410' => 'bna', 'A06p25480' => 'bna', 'A06p25560' => 'bna', 'A06p25670' => 'bna', 'A06p26000' => 'bna', 'A06p26080' => 'bna', 'A06p26510' => 'bna', 'A09p30660' => 'bna', 'A09p30670' => 'bna', 'Atru.chr10.44' => 'acertr', 'Atru.chr10.52' => 'acertr', 'Atru.chr12.1863' => 'acertr', 'BcaB04g16894' => 'bca', 'BcaC06g35652' => 'bca', 'BcaC06g35655' => 'bca', 'BcaC07g37373' => 'bca', 'BcaNung05730' => 'bca', 'BcaNung06258' => 'bca', 'BcaNung06496' => 'bca', 'BcaNung07277' => 'bca', 'BNapus_Darmor_BZH_scaffold_65p00080' => 'bna', 'BraA05t21122Z' => 'bra', 'BraA09t38623Z' => 'bra', 'BraA09t38635Z' => 'bra', 'BraSC65t46599Z' => 'bra', 'C02p52880' => 'bna', 'C02p52990' => 'bna', 'C07p00030' => 'bna', 'C07p12440' => 'bna', 'CARHR111740' => 'chi', 'Carub.0002s0966' => 'cru', 'Carub.0026s0006' => 'cru', 'Ca_14542_v3' => 'car', 'Ca_26109_v3' => 'car', 'Cc00_g25870' => 'ccan', 'Cfa020971' => 'cfa', 'Ciclev10029524m.g' => 'ccl', 'Ciclev10029531m.g' => 'ccl', 'CiPaw.15G100800' => 'cil', 'CiPaw.15G104600' => 'cil', 'CiPaw.15G105500' => 'cil', 'CiPaw.15G106700' => 'cil', 'CiPaw.15G110600' => 'cil', 'Duzib160G0894' => 'dzi', 'Duzib170G0310' => 'dzi', 'EL10As19g24172' => 'bvu', 'EL10As19g24179' => 'bvu', 'EL10As7g23709' => 'bvu', 'EL10As7g23710' => 'bvu', 'EL10As7g23712' => 'bvu', 'Glyma.13G011150' => 'gma', 'Glyma.13G013700' => 'gma', 'Glyma.U007802' => 'gma', 'Lj2g0014759' => 'lja', 'Lj6g0022573' => 'lja', 'LjContig00006g0020595' => 'lja', 'LjContig00371g0024011' => 'lja', 'LjContig00488g0020088' => 'lja', 'Manes.S000981' => 'mes', 'Manes.S007521' => 'mes', 'Manes.S014388' => 'mes', 'Manes.S017332' => 'mes', 'Manes.S022390' => 'mes', 'Manes.S022616' => 'mes', 'Manes.S024416' => 'mes', 'Manes.S024816' => 'mes', 'Manes.S026016' => 'mes', 'Manes.S027952' => 'mes', 'Manes.S030952' => 'mes', 'Manes.S032316' => 'mes', 'Manes.S032716' => 'mes', 'Manes.S034016' => 'mes', 'Manes.S034516' => 'mes', 'Manes.S042716' => 'mes', 'Manes.S044316' => 'mes', 'Manes.S044716' => 'mes', 'Manes.S048016' => 'mes', 'Manes.S048516' => 'mes', 'Manes.S049516' => 'mes', 'Manes.S053516' => 'mes', 'Manes.S055616' => 'mes', 'Migut.A01090' => 'egut', 'Migut.A01183' => 'egut', 'Migut.A01185' => 'egut', 'Migut.A01195' => 'egut', 'Migut.A01197' => 'egut', 'Migut.A01210' => 'egut', 'Migut.A01214' => 'egut', 'Migut.A01216' => 'egut', 'Migut.A01219' => 'egut', 'Migut.A01222' => 'egut', 'Migut.A01224' => 'egut', 'Migut.A01225' => 'egut', 'Migut.A01227' => 'egut', 'Migut.A01230' => 'egut', 'Migut.A01231' => 'egut', 'Migut.A01236' => 'egut', 'Migut.A01238' => 'egut', 'Migut.A01243' => 'egut', 'Migut.A01244' => 'egut', 'Migut.C00300' => 'egut', 'Migut.C00304' => 'egut', 'Migut.C00307' => 'egut', 'Migut.C00309' => 'egut', 'Migut.C00310' => 'egut', 'Migut.G00886' => 'egut', 'Migut.G00887' => 'egut', 'Migut.G00892' => 'egut', 'Migut.G00895' => 'egut', 'Migut.O00540' => 'egut', 'Migut.O00593' => 'egut', 'Migut.O00639' => 'egut', 'Migut.O00649' => 'egut', 'Migut.O00650' => 'egut', 'Migut.O00654' => 'egut', 'Nn038s41644' => 'nnu', 'Nn038s41666' => 'nnu', 'Nn040s41714' => 'nnu', 'Nn040s41736' => 'nnu', 'Nn040s41759' => 'nnu', 'Nn040s41782' => 'nnu', 'Nn046s41834' => 'nnu', 'Nn046s41857' => 'nnu', 'Nn046s41903' => 'nnu', 'Nn058s41950' => 'nnu', 'Nn058s41972' => 'nnu', 'Nn058s41995' => 'nnu', 'Nn059s42013' => 'nnu', 'Nn059s42036' => 'nnu', 'Nn059s42059' => 'nnu', 'Nn061s42083' => 'nnu', 'Nn061s42106' => 'nnu', 'Nn061s42129' => 'nnu', 'Nn062s42139' => 'nnu', 'Nn062s42162' => 'nnu', 'Nn062s42184' => 'nnu', 'Nn062s42205' => 'nnu', 'Nn067s42243' => 'nnu', 'Nn067s42265' => 'nnu', 'Nn067s42288' => 'nnu', 'Nn069s42306' => 'nnu', 'Nn069s42330' => 'nnu', 'Nn069s42353' => 'nnu', 'Nn072s42412' => 'nnu', 'Nn072s42434' => 'nnu', 'Nn072s42456' => 'nnu', 'Nn076s42483' => 'nnu', 'Nn076s42506' => 'nnu', 'Nn076s42528' => 'nnu', 'Nn077s42548' => 'nnu', 'Nn077s42571' => 'nnu', 'Nn078s42625' => 'nnu', 'Nn078s42647' => 'nnu', 'Nn078s42670' => 'nnu', 'Nn085s42691' => 'nnu', 'Nn085s42715' => 'nnu', 'Nn085s42723' => 'nnu', 'Nn085s42744' => 'nnu', 'Nn087s42767' => 'nnu', 'Nn087s42789' => 'nnu', 'Nn087s42811' => 'nnu', 'Nn090s42829' => 'nnu', 'Nn090s42852' => 'nnu', 'Nn094s42903' => 'nnu', 'Nn094s42905' => 'nnu', 'Nn094s42928' => 'nnu', 'Nn095s42960' => 'nnu', 'Nn095s42982' => 'nnu', 'Nn095s43004' => 'nnu', 'Nn097s43021' => 'nnu', 'Nn097s43045' => 'nnu', 'Nn097s43067' => 'nnu', 'Nn098s43077' => 'nnu', 'Nn098s43100' => 'nnu', 'Nn104s43142' => 'nnu', 'Nn104s43144' => 'nnu', 'Nn104s43167' => 'nnu', 'Nn105s43198' => 'nnu', 'Nn105s43220' => 'nnu', 'Nn108s43265' => 'nnu', 'Nn108s43287' => 'nnu', 'Nn110s43325' => 'nnu', 'Nn110s43348' => 'nnu', 'Nn116s43391' => 'nnu', 'Nn116s43412' => 'nnu', 'Nn119s43435' => 'nnu', 'Nn119s43458' => 'nnu', 'Nn122s43480' => 'nnu', 'Nn122s43503' => 'nnu', 'Nn122s43526' => 'nnu', 'Nn124s43533' => 'nnu', 'Nn124s43556' => 'nnu', 'Nn124s43578' => 'nnu', 'Nn125s43581' => 'nnu', 'Nn125s43605' => 'nnu', 'Nn125s43627' => 'nnu', 'Nn126s43636' => 'nnu', 'Nn126s43659' => 'nnu', 'Nn126s43681' => 'nnu', 'Nn129s43711' => 'nnu', 'Nn129s43734' => 'nnu', 'Nn130s43760' => 'nnu', 'Nn130s43782' => 'nnu', 'Nn136s43815' => 'nnu', 'Nn136s43838' => 'nnu', 'Nn137s43873' => 'nnu', 'Nn137s43896' => 'nnu', 'Nn139s43918' => 'nnu', 'Nn139s43940' => 'nnu', 'Nn141s43972' => 'nnu', 'Nn142s44009' => 'nnu', 'Nn142s44031' => 'nnu', 'Nn143s44062' => 'nnu', 'Nn143s44084' => 'nnu', 'Nn148s44117' => 'nnu', 'Nn148s44139' => 'nnu', 'Nn151s44157' => 'nnu', 'Nn151s44179' => 'nnu', 'Nn152s44203' => 'nnu', 'Nn152s44225' => 'nnu', 'Nn153s44234' => 'nnu', 'Nn153s44257' => 'nnu', 'Nn157s44314' => 'nnu', 'Nn157s44336' => 'nnu', 'Nn159s44360' => 'nnu', 'Nn159s44383' => 'nnu', 'Nn165s44407' => 'nnu', 'Nn165s44429' => 'nnu', 'Nn167s44457' => 'nnu', 'Nn167s44479' => 'nnu', 'Nn175s44513' => 'nnu', 'Nn175s44527' => 'nnu', 'Nn177s44543' => 'nnu', 'Nn177s44566' => 'nnu', 'Nn178s44589' => 'nnu', 'Nn178s44612' => 'nnu', 'Nn185s44631' => 'nnu', 'Nn185s44654' => 'nnu', 'Nn188s44678' => 'nnu', 'Nn188s44700' => 'nnu', 'Nn189s44714' => 'nnu', 'Nn189s44737' => 'nnu', 'Nn190s44751' => 'nnu', 'Nn190s44774' => 'nnu', 'Nn194s44792' => 'nnu', 'Nn194s44816' => 'nnu', 'Nn195s44835' => 'nnu', 'Nn196s44851' => 'nnu', 'Nn196s44873' => 'nnu', 'Nn1g00031' => 'nnu', 'Nn200s44898' => 'nnu', 'Nn201s44929' => 'nnu', 'Nn201s44953' => 'nnu', 'Nn202s44970' => 'nnu', 'Nn202s44992' => 'nnu', 'Nn203s45003' => 'nnu', 'Nn203s45026' => 'nnu', 'Nn204s45052' => 'nnu', 'Nn207s45074' => 'nnu', 'Nn207s45096' => 'nnu', 'Nn208s45127' => 'nnu', 'Nn209s45139' => 'nnu', 'Nn209s45161' => 'nnu', 'Nn210s45171' => 'nnu', 'Nn210s45193' => 'nnu', 'Nn213s45230' => 'nnu', 'Nn217s45254' => 'nnu', 'Nn217s45279' => 'nnu', 'Nn220s45310' => 'nnu', 'Nn221s45332' => 'nnu', 'Nn222s45352' => 'nnu', 'Nn222s45376' => 'nnu', 'Nn223s45384' => 'nnu', 'Nn223s45406' => 'nnu', 'Nn224s45434' => 'nnu', 'Nn227s45465' => 'nnu', 'Nn229s45495' => 'nnu', 'Nn230s45539' => 'nnu', 'Nn236s45578' => 'nnu', 'Nn237s45609' => 'nnu', 'Nn238s45634' => 'nnu', 'Nn240s45670' => 'nnu', 'Nn242s45698' => 'nnu', 'Nn244s45739' => 'nnu', 'Nn245s45753' => 'nnu', 'Nn245s45775' => 'nnu', 'Nn246s45793' => 'nnu', 'Nn247s45802' => 'nnu', 'Nn247s45826' => 'nnu', 'Nn250s45848' => 'nnu', 'Nn251s45860' => 'nnu', 'Nn252s45895' => 'nnu', 'Nn260s45912' => 'nnu', 'Nn260s45935' => 'nnu', 'Nn267s45973' => 'nnu', 'Nn268s45997' => 'nnu', 'Nn272s46029' => 'nnu', 'Nn273s46041' => 'nnu', 'Nn275s46074' => 'nnu', 'Nn282s46083' => 'nnu', 'Nn284s46112' => 'nnu', 'Nn288s46165' => 'nnu', 'Nn289s46171' => 'nnu', 'Nn294s46210' => 'nnu', 'Nn299s46214' => 'nnu', 'Nn2g16035' => 'nnu', 'Nn306s46251' => 'nnu', 'Nn307s46263' => 'nnu', 'Nn310s46288' => 'nnu', 'Nn315s46312' => 'nnu', 'Nn318s46318' => 'nnu', 'Nn327s46359' => 'nnu', 'Nn329s46370' => 'nnu', 'Nn338s46400' => 'nnu', 'Nn341s46424' => 'nnu', 'Nn344s46452' => 'nnu', 'Nn352s46487' => 'nnu', 'Nn356s46503' => 'nnu', 'Nn365s46515' => 'nnu', 'Nn376s46547' => 'nnu', 'Nn3g16070' => 'nnu', 'Nn3g16104' => 'nnu', 'Nn3g20492' => 'nnu', 'Nn3g20517' => 'nnu', 'Nn3g20539' => 'nnu', 'Nn3g20842' => 'nnu', 'Nn408s46577' => 'nnu', 'Nn422s46603' => 'nnu', 'Nn437s46674' => 'nnu', 'Nn444s46696' => 'nnu', 'Nn4g25097' => 'nnu', 'Nn4g25906' => 'nnu', 'Nn5g26986' => 'nnu', 'Nn5g27006' => 'nnu', 'Nn5g27010' => 'nnu', 'Nn5g27030' => 'nnu', 'Nn5g27319' => 'nnu', 'Nn5g31172' => 'nnu', 'Nn5g31215' => 'nnu', 'Nn5g31245' => 'nnu', 'Nn5g31268' => 'nnu', 'Nn5g31286' => 'nnu', 'Nn5g31305' => 'nnu', 'Nn5g31324' => 'nnu', 'Nn5g31351' => 'nnu', 'Nn5g31380' => 'nnu', 'Nn5g31402' => 'nnu', 'Nn5g31422' => 'nnu', 'Nn5g31445' => 'nnu', 'Nn5g31458' => 'nnu', 'Nn5g31478' => 'nnu', 'Nn6g32484' => 'nnu', 'Nn6g32486' => 'nnu', 'Nn6g32509' => 'nnu', 'Nn6g32529' => 'nnu', 'Nn6g32551' => 'nnu', 'Nn6g32573' => 'nnu', 'Nn6g32595' => 'nnu', 'Nn6g32596' => 'nnu', 'Nn6g32624' => 'nnu', 'Nn6g32651' => 'nnu', 'Nn6g32672' => 'nnu', 'Nn6g32695' => 'nnu', 'Nn6g32720' => 'nnu', 'Nn6g32730' => 'nnu', 'Nn6g32754' => 'nnu', 'Nn6g32764' => 'nnu', 'Nn6g32780' => 'nnu', 'Nn6g32781' => 'nnu', 'Nn6g32802' => 'nnu', 'Nn6g32814' => 'nnu', 'Nn6g32848' => 'nnu', 'Nn6g32862' => 'nnu', 'Nn6g32883' => 'nnu', 'Nn6g32910' => 'nnu', 'Nn6g32933' => 'nnu', 'Nn6g32956' => 'nnu', 'Nn6g32975' => 'nnu', 'Nn6g32993' => 'nnu', 'Nn6g33031' => 'nnu', 'Nn6g33053' => 'nnu', 'Nn6g33061' => 'nnu', 'Nn6g33081' => 'nnu', 'Nn6g33101' => 'nnu', 'Nn6g33110' => 'nnu', 'Nn6g33129' => 'nnu', 'Nn6g33145' => 'nnu', 'Nn6g33164' => 'nnu', 'Nn6g33178' => 'nnu', 'Nn6g33216' => 'nnu', 'Nn6g33235' => 'nnu', 'Nn6g33239' => 'nnu', 'Nn8g40311' => 'nnu', 'Nn8g40335' => 'nnu', 'Nn8g41314' => 'nnu', 'Nn8g41338' => 'nnu', 'Oeu008745.1' => 'oeu', 'PGSC0003DMG400019038' => 'stu', 'PGSC0003DMG400035518' => 'stu', 'PGSC0003DMG400043383' => 'stu', 'Phvul.002G055275' => 'pvu', 'Phvul.002G055425' => 'pvu', 'Phvul.003G000434' => 'pvu', 'Phvul.003G090301' => 'pvu', 'Phvul.L002175' => 'pvu', 'Potri.008G223900' => 'ptr', 'Potri.008G224102' => 'ptr', 'Potri.008G224138' => 'ptr', 'Potri.008G224165' => 'ptr', 'Potri.008G224201' => 'ptr', 'Potri.008G224264' => 'ptr', 'Potri.008G224282' => 'ptr', 'Potri.008G224301' => 'ptr', 'Potri.008G224319' => 'ptr', 'Potri.008G224346' => 'ptr', 'Potri.008G224364' => 'ptr', 'Potri.008G224400' => 'ptr', 'Potri.008G224601' => 'ptr', 'Potri.008G225001' => 'ptr', 'Potri.008G225201' => 'ptr', 'Potri.008G225401' => 'ptr', 'Potri.014G185372' => 'ptr', 'Potri.014G185444' => 'ptr', 'Potri.014G185660' => 'ptr', 'Potri.014G185876' => 'ptr', 'Potri.014G186020' => 'ptr', 'Potri.014G186164' => 'ptr', 'Potri.014G186380' => 'ptr', 'Potri.014G186524' => 'ptr', 'Potri.014G186600' => 'ptr', 'Potri.T124505' => 'ptr', 'Sopen00g004120' => 'spe', 'Sopen00g006740' => 'spe', 'Sopen06g001500' => 'spe', 'Thhalv10028274m.g' => 'esa', 'Thhalv10028342m.g' => 'esa', 'unitig_124.g30880' => 'ugi', 'unitig_127.g34227' => 'ugi', 'unitig_135.g35479' => 'ugi', 'unitig_139.g29582' => 'ugi', 'unitig_143.g32398' => 'ugi', 'unitig_145.g32340' => 'ugi', 'unitig_145.g32367' => 'ugi', 'unitig_175.g35439' => 'ugi', 'unitig_579.g34805' => 'ugi', 'unitig_581.g33717' => 'ugi', 'unitig_583.g34786' => 'ugi', 'unitig_659.g33186' => 'ugi', 'unitig_669.g33613' => 'ugi', 'unitig_681.g32559' => 'ugi', 'unitig_685.g33134' => 'ugi', 'unitig_721.g34551' => 'ugi', 'unitig_805.g34440' => 'ugi', 'unitig_809.g34388' => 'ugi', 'unitig_830.g33044' => 'ugi', 'unitig_881.g33004' => 'ugi', 'unitig_882.g34274' => 'ugi', 'unitig_96.g33476' => 'ugi', 'Zm00001eb439550' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001319', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001319' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001319', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '475', 'num_species' => '26' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001319' ) ), 'genes' => array( 'A05p21870' => 'bna', 'A05p22140' => 'bna', 'A05p22230' => 'bna', 'A05p22420' => 'bna', 'A05p22730' => 'bna', 'A05p22740' => 'bna', 'A05p22750' => 'bna', 'A05p22760' => 'bna', 'A06p23760' => 'bna', 'A06p23900' => 'bna', 'A06p24020' => 'bna', 'A06p24050' => 'bna', 'A06p24430' => 'bna', 'A06p24440' => 'bna', 'A06p24850' => 'bna', 'A06p24920' => 'bna', 'A06p25410' => 'bna', 'A06p25480' => 'bna', 'A06p25560' => 'bna', 'A06p25670' => 'bna', 'A06p26000' => 'bna', 'A06p26080' => 'bna', 'A06p26510' => 'bna', 'A09p30660' => 'bna', 'A09p30670' => 'bna', 'Atru.chr10.44' => 'acertr', 'Atru.chr10.52' => 'acertr', 'Atru.chr12.1863' => 'acertr', 'BcaB04g16894' => 'bca', 'BcaC06g35652' => 'bca', 'BcaC06g35655' => 'bca', 'BcaC07g37373' => 'bca', 'BcaNung05730' => 'bca', 'BcaNung06258' => 'bca', 'BcaNung06496' => 'bca', 'BcaNung07277' => 'bca', 'BNapus_Darmor_BZH_scaffold_65p00080' => 'bna', 'BraA05t21122Z' => 'bra', 'BraA09t38623Z' => 'bra', 'BraA09t38635Z' => 'bra', 'BraSC65t46599Z' => 'bra', 'C02p52880' => 'bna', 'C02p52990' => 'bna', 'C07p00030' => 'bna', 'C07p12440' => 'bna', 'CARHR111740' => 'chi', 'Carub.0002s0966' => 'cru', 'Carub.0026s0006' => 'cru', 'Ca_14542_v3' => 'car', 'Ca_26109_v3' => 'car', 'Cc00_g25870' => 'ccan', 'Cfa020971' => 'cfa', 'Ciclev10029524m.g' => 'ccl', 'Ciclev10029531m.g' => 'ccl', 'CiPaw.15G100800' => 'cil', 'CiPaw.15G104600' => 'cil', 'CiPaw.15G105500' => 'cil', 'CiPaw.15G106700' => 'cil', 'CiPaw.15G110600' => 'cil', 'Duzib160G0894' => 'dzi', 'Duzib170G0310' => 'dzi', 'EL10As19g24172' => 'bvu', 'EL10As19g24179' => 'bvu', 'EL10As7g23709' => 'bvu', 'EL10As7g23710' => 'bvu', 'EL10As7g23712' => 'bvu', 'Glyma.13G011150' => 'gma', 'Glyma.13G013700' => 'gma', 'Glyma.U007802' => 'gma', 'Lj2g0014759' => 'lja', 'Lj6g0022573' => 'lja', 'LjContig00006g0020595' => 'lja', 'LjContig00371g0024011' => 'lja', 'LjContig00488g0020088' => 'lja', 'Manes.S000981' => 'mes', 'Manes.S007521' => 'mes', 'Manes.S014388' => 'mes', 'Manes.S017332' => 'mes', 'Manes.S022390' => 'mes', 'Manes.S022616' => 'mes', 'Manes.S024416' => 'mes', 'Manes.S024816' => 'mes', 'Manes.S026016' => 'mes', 'Manes.S027952' => 'mes', 'Manes.S030952' => 'mes', 'Manes.S032316' => 'mes', 'Manes.S032716' => 'mes', 'Manes.S034016' => 'mes', 'Manes.S034516' => 'mes', 'Manes.S042716' => 'mes', 'Manes.S044316' => 'mes', 'Manes.S044716' => 'mes', 'Manes.S048016' => 'mes', 'Manes.S048516' => 'mes', 'Manes.S049516' => 'mes', 'Manes.S053516' => 'mes', 'Manes.S055616' => 'mes', 'Migut.A01090' => 'egut', 'Migut.A01183' => 'egut', 'Migut.A01185' => 'egut', 'Migut.A01195' => 'egut', 'Migut.A01197' => 'egut', 'Migut.A01210' => 'egut', 'Migut.A01214' => 'egut', 'Migut.A01216' => 'egut', 'Migut.A01219' => 'egut', 'Migut.A01222' => 'egut', 'Migut.A01224' => 'egut', 'Migut.A01225' => 'egut', 'Migut.A01227' => 'egut', 'Migut.A01230' => 'egut', 'Migut.A01231' => 'egut', 'Migut.A01236' => 'egut', 'Migut.A01238' => 'egut', 'Migut.A01243' => 'egut', 'Migut.A01244' => 'egut', 'Migut.C00300' => 'egut', 'Migut.C00304' => 'egut', 'Migut.C00307' => 'egut', 'Migut.C00309' => 'egut', 'Migut.C00310' => 'egut', 'Migut.G00886' => 'egut', 'Migut.G00887' => 'egut', 'Migut.G00892' => 'egut', 'Migut.G00895' => 'egut', 'Migut.O00540' => 'egut', 'Migut.O00593' => 'egut', 'Migut.O00639' => 'egut', 'Migut.O00649' => 'egut', 'Migut.O00650' => 'egut', 'Migut.O00654' => 'egut', 'Nn038s41644' => 'nnu', 'Nn038s41666' => 'nnu', 'Nn040s41714' => 'nnu', 'Nn040s41736' => 'nnu', 'Nn040s41759' => 'nnu', 'Nn040s41782' => 'nnu', 'Nn046s41834' => 'nnu', 'Nn046s41857' => 'nnu', 'Nn046s41903' => 'nnu', 'Nn058s41950' => 'nnu', 'Nn058s41972' => 'nnu', 'Nn058s41995' => 'nnu', 'Nn059s42013' => 'nnu', 'Nn059s42036' => 'nnu', 'Nn059s42059' => 'nnu', 'Nn061s42083' => 'nnu', 'Nn061s42106' => 'nnu', 'Nn061s42129' => 'nnu', 'Nn062s42139' => 'nnu', 'Nn062s42162' => 'nnu', 'Nn062s42184' => 'nnu', 'Nn062s42205' => 'nnu', 'Nn067s42243' => 'nnu', 'Nn067s42265' => 'nnu', 'Nn067s42288' => 'nnu', 'Nn069s42306' => 'nnu', 'Nn069s42330' => 'nnu', 'Nn069s42353' => 'nnu', 'Nn072s42412' => 'nnu', 'Nn072s42434' => 'nnu', 'Nn072s42456' => 'nnu', 'Nn076s42483' => 'nnu', 'Nn076s42506' => 'nnu', 'Nn076s42528' => 'nnu', 'Nn077s42548' => 'nnu', 'Nn077s42571' => 'nnu', 'Nn078s42625' => 'nnu', 'Nn078s42647' => 'nnu', 'Nn078s42670' => 'nnu', 'Nn085s42691' => 'nnu', 'Nn085s42715' => 'nnu', 'Nn085s42723' => 'nnu', 'Nn085s42744' => 'nnu', 'Nn087s42767' => 'nnu', 'Nn087s42789' => 'nnu', 'Nn087s42811' => 'nnu', 'Nn090s42829' => 'nnu', 'Nn090s42852' => 'nnu', 'Nn094s42903' => 'nnu', 'Nn094s42905' => 'nnu', 'Nn094s42928' => 'nnu', 'Nn095s42960' => 'nnu', 'Nn095s42982' => 'nnu', 'Nn095s43004' => 'nnu', 'Nn097s43021' => 'nnu', 'Nn097s43045' => 'nnu', 'Nn097s43067' => 'nnu', 'Nn098s43077' => 'nnu', 'Nn098s43100' => 'nnu', 'Nn104s43142' => 'nnu', 'Nn104s43144' => 'nnu', 'Nn104s43167' => 'nnu', 'Nn105s43198' => 'nnu', 'Nn105s43220' => 'nnu', 'Nn108s43265' => 'nnu', 'Nn108s43287' => 'nnu', 'Nn110s43325' => 'nnu', 'Nn110s43348' => 'nnu', 'Nn116s43391' => 'nnu', 'Nn116s43412' => 'nnu', 'Nn119s43435' => 'nnu', 'Nn119s43458' => 'nnu', 'Nn122s43480' => 'nnu', 'Nn122s43503' => 'nnu', 'Nn122s43526' => 'nnu', 'Nn124s43533' => 'nnu', 'Nn124s43556' => 'nnu', 'Nn124s43578' => 'nnu', 'Nn125s43581' => 'nnu', 'Nn125s43605' => 'nnu', 'Nn125s43627' => 'nnu', 'Nn126s43636' => 'nnu', 'Nn126s43659' => 'nnu', 'Nn126s43681' => 'nnu', 'Nn129s43711' => 'nnu', 'Nn129s43734' => 'nnu', 'Nn130s43760' => 'nnu', 'Nn130s43782' => 'nnu', 'Nn136s43815' => 'nnu', 'Nn136s43838' => 'nnu', 'Nn137s43873' => 'nnu', 'Nn137s43896' => 'nnu', 'Nn139s43918' => 'nnu', 'Nn139s43940' => 'nnu', 'Nn141s43972' => 'nnu', 'Nn142s44009' => 'nnu', 'Nn142s44031' => 'nnu', 'Nn143s44062' => 'nnu', 'Nn143s44084' => 'nnu', 'Nn148s44117' => 'nnu', 'Nn148s44139' => 'nnu', 'Nn151s44157' => 'nnu', 'Nn151s44179' => 'nnu', 'Nn152s44203' => 'nnu', 'Nn152s44225' => 'nnu', 'Nn153s44234' => 'nnu', 'Nn153s44257' => 'nnu', 'Nn157s44314' => 'nnu', 'Nn157s44336' => 'nnu', 'Nn159s44360' => 'nnu', 'Nn159s44383' => 'nnu', 'Nn165s44407' => 'nnu', 'Nn165s44429' => 'nnu', 'Nn167s44457' => 'nnu', 'Nn167s44479' => 'nnu', 'Nn175s44513' => 'nnu', 'Nn175s44527' => 'nnu', 'Nn177s44543' => 'nnu', 'Nn177s44566' => 'nnu', 'Nn178s44589' => 'nnu', 'Nn178s44612' => 'nnu', 'Nn185s44631' => 'nnu', 'Nn185s44654' => 'nnu', 'Nn188s44678' => 'nnu', 'Nn188s44700' => 'nnu', 'Nn189s44714' => 'nnu', 'Nn189s44737' => 'nnu', 'Nn190s44751' => 'nnu', 'Nn190s44774' => 'nnu', 'Nn194s44792' => 'nnu', 'Nn194s44816' => 'nnu', 'Nn195s44835' => 'nnu', 'Nn196s44851' => 'nnu', 'Nn196s44873' => 'nnu', 'Nn1g00031' => 'nnu', 'Nn200s44898' => 'nnu', 'Nn201s44929' => 'nnu', 'Nn201s44953' => 'nnu', 'Nn202s44970' => 'nnu', 'Nn202s44992' => 'nnu', 'Nn203s45003' => 'nnu', 'Nn203s45026' => 'nnu', 'Nn204s45052' => 'nnu', 'Nn207s45074' => 'nnu', 'Nn207s45096' => 'nnu', 'Nn208s45127' => 'nnu', 'Nn209s45139' => 'nnu', 'Nn209s45161' => 'nnu', 'Nn210s45171' => 'nnu', 'Nn210s45193' => 'nnu', 'Nn213s45230' => 'nnu', 'Nn217s45254' => 'nnu', 'Nn217s45279' => 'nnu', 'Nn220s45310' => 'nnu', 'Nn221s45332' => 'nnu', 'Nn222s45352' => 'nnu', 'Nn222s45376' => 'nnu', 'Nn223s45384' => 'nnu', 'Nn223s45406' => 'nnu', 'Nn224s45434' => 'nnu', 'Nn227s45465' => 'nnu', 'Nn229s45495' => 'nnu', 'Nn230s45539' => 'nnu', 'Nn236s45578' => 'nnu', 'Nn237s45609' => 'nnu', 'Nn238s45634' => 'nnu', 'Nn240s45670' => 'nnu', 'Nn242s45698' => 'nnu', 'Nn244s45739' => 'nnu', 'Nn245s45753' => 'nnu', 'Nn245s45775' => 'nnu', 'Nn246s45793' => 'nnu', 'Nn247s45802' => 'nnu', 'Nn247s45826' => 'nnu', 'Nn250s45848' => 'nnu', 'Nn251s45860' => 'nnu', 'Nn252s45895' => 'nnu', 'Nn260s45912' => 'nnu', 'Nn260s45935' => 'nnu', 'Nn267s45973' => 'nnu', 'Nn268s45997' => 'nnu', 'Nn272s46029' => 'nnu', 'Nn273s46041' => 'nnu', 'Nn275s46074' => 'nnu', 'Nn282s46083' => 'nnu', 'Nn284s46112' => 'nnu', 'Nn288s46165' => 'nnu', 'Nn289s46171' => 'nnu', 'Nn294s46210' => 'nnu', 'Nn299s46214' => 'nnu', 'Nn2g16035' => 'nnu', 'Nn306s46251' => 'nnu', 'Nn307s46263' => 'nnu', 'Nn310s46288' => 'nnu', 'Nn315s46312' => 'nnu', 'Nn318s46318' => 'nnu', 'Nn327s46359' => 'nnu', 'Nn329s46370' => 'nnu', 'Nn338s46400' => 'nnu', 'Nn341s46424' => 'nnu', 'Nn344s46452' => 'nnu', 'Nn352s46487' => 'nnu', 'Nn356s46503' => 'nnu', 'Nn365s46515' => 'nnu', 'Nn376s46547' => 'nnu', 'Nn3g16070' => 'nnu', 'Nn3g16104' => 'nnu', 'Nn3g20492' => 'nnu', 'Nn3g20517' => 'nnu', 'Nn3g20539' => 'nnu', 'Nn3g20842' => 'nnu', 'Nn408s46577' => 'nnu', 'Nn422s46603' => 'nnu', 'Nn437s46674' => 'nnu', 'Nn444s46696' => 'nnu', 'Nn4g25097' => 'nnu', 'Nn4g25906' => 'nnu', 'Nn5g26986' => 'nnu', 'Nn5g27006' => 'nnu', 'Nn5g27010' => 'nnu', 'Nn5g27030' => 'nnu', 'Nn5g27319' => 'nnu', 'Nn5g31172' => 'nnu', 'Nn5g31215' => 'nnu', 'Nn5g31245' => 'nnu', 'Nn5g31268' => 'nnu', 'Nn5g31286' => 'nnu', 'Nn5g31305' => 'nnu', 'Nn5g31324' => 'nnu', 'Nn5g31351' => 'nnu', 'Nn5g31380' => 'nnu', 'Nn5g31402' => 'nnu', 'Nn5g31422' => 'nnu', 'Nn5g31445' => 'nnu', 'Nn5g31458' => 'nnu', 'Nn5g31478' => 'nnu', 'Nn6g32484' => 'nnu', 'Nn6g32486' => 'nnu', 'Nn6g32509' => 'nnu', 'Nn6g32529' => 'nnu', 'Nn6g32551' => 'nnu', 'Nn6g32573' => 'nnu', 'Nn6g32595' => 'nnu', 'Nn6g32596' => 'nnu', 'Nn6g32624' => 'nnu', 'Nn6g32651' => 'nnu', 'Nn6g32672' => 'nnu', 'Nn6g32695' => 'nnu', 'Nn6g32720' => 'nnu', 'Nn6g32730' => 'nnu', 'Nn6g32754' => 'nnu', 'Nn6g32764' => 'nnu', 'Nn6g32780' => 'nnu', 'Nn6g32781' => 'nnu', 'Nn6g32802' => 'nnu', 'Nn6g32814' => 'nnu', 'Nn6g32848' => 'nnu', 'Nn6g32862' => 'nnu', 'Nn6g32883' => 'nnu', 'Nn6g32910' => 'nnu', 'Nn6g32933' => 'nnu', 'Nn6g32956' => 'nnu', 'Nn6g32975' => 'nnu', 'Nn6g32993' => 'nnu', 'Nn6g33031' => 'nnu', 'Nn6g33053' => 'nnu', 'Nn6g33061' => 'nnu', 'Nn6g33081' => 'nnu', 'Nn6g33101' => 'nnu', 'Nn6g33110' => 'nnu', 'Nn6g33129' => 'nnu', 'Nn6g33145' => 'nnu', 'Nn6g33164' => 'nnu', 'Nn6g33178' => 'nnu', 'Nn6g33216' => 'nnu', 'Nn6g33235' => 'nnu', 'Nn6g33239' => 'nnu', 'Nn8g40311' => 'nnu', 'Nn8g40335' => 'nnu', 'Nn8g41314' => 'nnu', 'Nn8g41338' => 'nnu', 'Oeu008745.1' => 'oeu', 'PGSC0003DMG400019038' => 'stu', 'PGSC0003DMG400035518' => 'stu', 'PGSC0003DMG400043383' => 'stu', 'Phvul.002G055275' => 'pvu', 'Phvul.002G055425' => 'pvu', 'Phvul.003G000434' => 'pvu', 'Phvul.003G090301' => 'pvu', 'Phvul.L002175' => 'pvu', 'Potri.008G223900' => 'ptr', 'Potri.008G224102' => 'ptr', 'Potri.008G224138' => 'ptr', 'Potri.008G224165' => 'ptr', 'Potri.008G224201' => 'ptr', 'Potri.008G224264' => 'ptr', 'Potri.008G224282' => 'ptr', 'Potri.008G224301' => 'ptr', 'Potri.008G224319' => 'ptr', 'Potri.008G224346' => 'ptr', 'Potri.008G224364' => 'ptr', 'Potri.008G224400' => 'ptr', 'Potri.008G224601' => 'ptr', 'Potri.008G225001' => 'ptr', 'Potri.008G225201' => 'ptr', 'Potri.008G225401' => 'ptr', 'Potri.014G185372' => 'ptr', 'Potri.014G185444' => 'ptr', 'Potri.014G185660' => 'ptr', 'Potri.014G185876' => 'ptr', 'Potri.014G186020' => 'ptr', 'Potri.014G186164' => 'ptr', 'Potri.014G186380' => 'ptr', 'Potri.014G186524' => 'ptr', 'Potri.014G186600' => 'ptr', 'Potri.T124505' => 'ptr', 'Sopen00g004120' => 'spe', 'Sopen00g006740' => 'spe', 'Sopen06g001500' => 'spe', 'Thhalv10028274m.g' => 'esa', 'Thhalv10028342m.g' => 'esa', 'unitig_124.g30880' => 'ugi', 'unitig_127.g34227' => 'ugi', 'unitig_135.g35479' => 'ugi', 'unitig_139.g29582' => 'ugi', 'unitig_143.g32398' => 'ugi', 'unitig_145.g32340' => 'ugi', 'unitig_145.g32367' => 'ugi', 'unitig_175.g35439' => 'ugi', 'unitig_579.g34805' => 'ugi', 'unitig_581.g33717' => 'ugi', 'unitig_583.g34786' => 'ugi', 'unitig_659.g33186' => 'ugi', 'unitig_669.g33613' => 'ugi', 'unitig_681.g32559' => 'ugi', 'unitig_685.g33134' => 'ugi', 'unitig_721.g34551' => 'ugi', 'unitig_805.g34440' => 'ugi', 'unitig_809.g34388' => 'ugi', 'unitig_830.g33044' => 'ugi', 'unitig_881.g33004' => 'ugi', 'unitig_882.g34274' => 'ugi', 'unitig_96.g33476' => 'ugi', 'Zm00001eb439550' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001319' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001319' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001319' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001319' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001319', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '475', 'num_species' => '26' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A05p21870' => 'bna', 'A05p22140' => 'bna', 'A05p22230' => 'bna', 'A05p22420' => 'bna', 'A05p22730' => 'bna', 'A05p22740' => 'bna', 'A05p22750' => 'bna', 'A05p22760' => 'bna', 'A06p23760' => 'bna', 'A06p23900' => 'bna', 'A06p24020' => 'bna', 'A06p24050' => 'bna', 'A06p24430' => 'bna', 'A06p24440' => 'bna', 'A06p24850' => 'bna', 'A06p24920' => 'bna', 'A06p25410' => 'bna', 'A06p25480' => 'bna', 'A06p25560' => 'bna', 'A06p25670' => 'bna', 'A06p26000' => 'bna', 'A06p26080' => 'bna', 'A06p26510' => 'bna', 'A09p30660' => 'bna', 'A09p30670' => 'bna', 'Atru.chr10.44' => 'acertr', 'Atru.chr10.52' => 'acertr', 'Atru.chr12.1863' => 'acertr', 'BcaB04g16894' => 'bca', 'BcaC06g35652' => 'bca', 'BcaC06g35655' => 'bca', 'BcaC07g37373' => 'bca', 'BcaNung05730' => 'bca', 'BcaNung06258' => 'bca', 'BcaNung06496' => 'bca', 'BcaNung07277' => 'bca', 'BNapus_Darmor_BZH_scaffold_65p00080' => 'bna', 'BraA05t21122Z' => 'bra', 'BraA09t38623Z' => 'bra', 'BraA09t38635Z' => 'bra', 'BraSC65t46599Z' => 'bra', 'C02p52880' => 'bna', 'C02p52990' => 'bna', 'C07p00030' => 'bna', 'C07p12440' => 'bna', 'CARHR111740' => 'chi', 'Carub.0002s0966' => 'cru', 'Carub.0026s0006' => 'cru', 'Ca_14542_v3' => 'car', 'Ca_26109_v3' => 'car', 'Cc00_g25870' => 'ccan', 'Cfa020971' => 'cfa', 'Ciclev10029524m.g' => 'ccl', 'Ciclev10029531m.g' => 'ccl', 'CiPaw.15G100800' => 'cil', 'CiPaw.15G104600' => 'cil', 'CiPaw.15G105500' => 'cil', 'CiPaw.15G106700' => 'cil', 'CiPaw.15G110600' => 'cil', 'Duzib160G0894' => 'dzi', 'Duzib170G0310' => 'dzi', 'EL10As19g24172' => 'bvu', 'EL10As19g24179' => 'bvu', 'EL10As7g23709' => 'bvu', 'EL10As7g23710' => 'bvu', 'EL10As7g23712' => 'bvu', 'Glyma.13G011150' => 'gma', 'Glyma.13G013700' => 'gma', 'Glyma.U007802' => 'gma', 'Lj2g0014759' => 'lja', 'Lj6g0022573' => 'lja', 'LjContig00006g0020595' => 'lja', 'LjContig00371g0024011' => 'lja', 'LjContig00488g0020088' => 'lja', 'Manes.S000981' => 'mes', 'Manes.S007521' => 'mes', 'Manes.S014388' => 'mes', 'Manes.S017332' => 'mes', 'Manes.S022390' => 'mes', 'Manes.S022616' => 'mes', 'Manes.S024416' => 'mes', 'Manes.S024816' => 'mes', 'Manes.S026016' => 'mes', 'Manes.S027952' => 'mes', 'Manes.S030952' => 'mes', 'Manes.S032316' => 'mes', 'Manes.S032716' => 'mes', 'Manes.S034016' => 'mes', 'Manes.S034516' => 'mes', 'Manes.S042716' => 'mes', 'Manes.S044316' => 'mes', 'Manes.S044716' => 'mes', 'Manes.S048016' => 'mes', 'Manes.S048516' => 'mes', 'Manes.S049516' => 'mes', 'Manes.S053516' => 'mes', 'Manes.S055616' => 'mes', 'Migut.A01090' => 'egut', 'Migut.A01183' => 'egut', 'Migut.A01185' => 'egut', 'Migut.A01195' => 'egut', 'Migut.A01197' => 'egut', 'Migut.A01210' => 'egut', 'Migut.A01214' => 'egut', 'Migut.A01216' => 'egut', 'Migut.A01219' => 'egut', 'Migut.A01222' => 'egut', 'Migut.A01224' => 'egut', 'Migut.A01225' => 'egut', 'Migut.A01227' => 'egut', 'Migut.A01230' => 'egut', 'Migut.A01231' => 'egut', 'Migut.A01236' => 'egut', 'Migut.A01238' => 'egut', 'Migut.A01243' => 'egut', 'Migut.A01244' => 'egut', 'Migut.C00300' => 'egut', 'Migut.C00304' => 'egut', 'Migut.C00307' => 'egut', 'Migut.C00309' => 'egut', 'Migut.C00310' => 'egut', 'Migut.G00886' => 'egut', 'Migut.G00887' => 'egut', 'Migut.G00892' => 'egut', 'Migut.G00895' => 'egut', 'Migut.O00540' => 'egut', 'Migut.O00593' => 'egut', 'Migut.O00639' => 'egut', 'Migut.O00649' => 'egut', 'Migut.O00650' => 'egut', 'Migut.O00654' => 'egut', 'Nn038s41644' => 'nnu', 'Nn038s41666' => 'nnu', 'Nn040s41714' => 'nnu', 'Nn040s41736' => 'nnu', 'Nn040s41759' => 'nnu', 'Nn040s41782' => 'nnu', 'Nn046s41834' => 'nnu', 'Nn046s41857' => 'nnu', 'Nn046s41903' => 'nnu', 'Nn058s41950' => 'nnu', 'Nn058s41972' => 'nnu', 'Nn058s41995' => 'nnu', 'Nn059s42013' => 'nnu', 'Nn059s42036' => 'nnu', 'Nn059s42059' => 'nnu', 'Nn061s42083' => 'nnu', 'Nn061s42106' => 'nnu', 'Nn061s42129' => 'nnu', 'Nn062s42139' => 'nnu', 'Nn062s42162' => 'nnu', 'Nn062s42184' => 'nnu', 'Nn062s42205' => 'nnu', 'Nn067s42243' => 'nnu', 'Nn067s42265' => 'nnu', 'Nn067s42288' => 'nnu', 'Nn069s42306' => 'nnu', 'Nn069s42330' => 'nnu', 'Nn069s42353' => 'nnu', 'Nn072s42412' => 'nnu', 'Nn072s42434' => 'nnu', 'Nn072s42456' => 'nnu', 'Nn076s42483' => 'nnu', 'Nn076s42506' => 'nnu', 'Nn076s42528' => 'nnu', 'Nn077s42548' => 'nnu', 'Nn077s42571' => 'nnu', 'Nn078s42625' => 'nnu', 'Nn078s42647' => 'nnu', 'Nn078s42670' => 'nnu', 'Nn085s42691' => 'nnu', 'Nn085s42715' => 'nnu', 'Nn085s42723' => 'nnu', 'Nn085s42744' => 'nnu', 'Nn087s42767' => 'nnu', 'Nn087s42789' => 'nnu', 'Nn087s42811' => 'nnu', 'Nn090s42829' => 'nnu', 'Nn090s42852' => 'nnu', 'Nn094s42903' => 'nnu', 'Nn094s42905' => 'nnu', 'Nn094s42928' => 'nnu', 'Nn095s42960' => 'nnu', 'Nn095s42982' => 'nnu', 'Nn095s43004' => 'nnu', 'Nn097s43021' => 'nnu', 'Nn097s43045' => 'nnu', 'Nn097s43067' => 'nnu', 'Nn098s43077' => 'nnu', 'Nn098s43100' => 'nnu', 'Nn104s43142' => 'nnu', 'Nn104s43144' => 'nnu', 'Nn104s43167' => 'nnu', 'Nn105s43198' => 'nnu', 'Nn105s43220' => 'nnu', 'Nn108s43265' => 'nnu', 'Nn108s43287' => 'nnu', 'Nn110s43325' => 'nnu', 'Nn110s43348' => 'nnu', 'Nn116s43391' => 'nnu', 'Nn116s43412' => 'nnu', 'Nn119s43435' => 'nnu', 'Nn119s43458' => 'nnu', 'Nn122s43480' => 'nnu', 'Nn122s43503' => 'nnu', 'Nn122s43526' => 'nnu', 'Nn124s43533' => 'nnu', 'Nn124s43556' => 'nnu', 'Nn124s43578' => 'nnu', 'Nn125s43581' => 'nnu', 'Nn125s43605' => 'nnu', 'Nn125s43627' => 'nnu', 'Nn126s43636' => 'nnu', 'Nn126s43659' => 'nnu', 'Nn126s43681' => 'nnu', 'Nn129s43711' => 'nnu', 'Nn129s43734' => 'nnu', 'Nn130s43760' => 'nnu', 'Nn130s43782' => 'nnu', 'Nn136s43815' => 'nnu', 'Nn136s43838' => 'nnu', 'Nn137s43873' => 'nnu', 'Nn137s43896' => 'nnu', 'Nn139s43918' => 'nnu', 'Nn139s43940' => 'nnu', 'Nn141s43972' => 'nnu', 'Nn142s44009' => 'nnu', 'Nn142s44031' => 'nnu', 'Nn143s44062' => 'nnu', 'Nn143s44084' => 'nnu', 'Nn148s44117' => 'nnu', 'Nn148s44139' => 'nnu', 'Nn151s44157' => 'nnu', 'Nn151s44179' => 'nnu', 'Nn152s44203' => 'nnu', 'Nn152s44225' => 'nnu', 'Nn153s44234' => 'nnu', 'Nn153s44257' => 'nnu', 'Nn157s44314' => 'nnu', 'Nn157s44336' => 'nnu', 'Nn159s44360' => 'nnu', 'Nn159s44383' => 'nnu', 'Nn165s44407' => 'nnu', 'Nn165s44429' => 'nnu', 'Nn167s44457' => 'nnu', 'Nn167s44479' => 'nnu', 'Nn175s44513' => 'nnu', 'Nn175s44527' => 'nnu', 'Nn177s44543' => 'nnu', 'Nn177s44566' => 'nnu', 'Nn178s44589' => 'nnu', 'Nn178s44612' => 'nnu', 'Nn185s44631' => 'nnu', 'Nn185s44654' => 'nnu', 'Nn188s44678' => 'nnu', 'Nn188s44700' => 'nnu', 'Nn189s44714' => 'nnu', 'Nn189s44737' => 'nnu', 'Nn190s44751' => 'nnu', 'Nn190s44774' => 'nnu', 'Nn194s44792' => 'nnu', 'Nn194s44816' => 'nnu', 'Nn195s44835' => 'nnu', 'Nn196s44851' => 'nnu', 'Nn196s44873' => 'nnu', 'Nn1g00031' => 'nnu', 'Nn200s44898' => 'nnu', 'Nn201s44929' => 'nnu', 'Nn201s44953' => 'nnu', 'Nn202s44970' => 'nnu', 'Nn202s44992' => 'nnu', 'Nn203s45003' => 'nnu', 'Nn203s45026' => 'nnu', 'Nn204s45052' => 'nnu', 'Nn207s45074' => 'nnu', 'Nn207s45096' => 'nnu', 'Nn208s45127' => 'nnu', 'Nn209s45139' => 'nnu', 'Nn209s45161' => 'nnu', 'Nn210s45171' => 'nnu', 'Nn210s45193' => 'nnu', 'Nn213s45230' => 'nnu', 'Nn217s45254' => 'nnu', 'Nn217s45279' => 'nnu', 'Nn220s45310' => 'nnu', 'Nn221s45332' => 'nnu', 'Nn222s45352' => 'nnu', 'Nn222s45376' => 'nnu', 'Nn223s45384' => 'nnu', 'Nn223s45406' => 'nnu', 'Nn224s45434' => 'nnu', 'Nn227s45465' => 'nnu', 'Nn229s45495' => 'nnu', 'Nn230s45539' => 'nnu', 'Nn236s45578' => 'nnu', 'Nn237s45609' => 'nnu', 'Nn238s45634' => 'nnu', 'Nn240s45670' => 'nnu', 'Nn242s45698' => 'nnu', 'Nn244s45739' => 'nnu', 'Nn245s45753' => 'nnu', 'Nn245s45775' => 'nnu', 'Nn246s45793' => 'nnu', 'Nn247s45802' => 'nnu', 'Nn247s45826' => 'nnu', 'Nn250s45848' => 'nnu', 'Nn251s45860' => 'nnu', 'Nn252s45895' => 'nnu', 'Nn260s45912' => 'nnu', 'Nn260s45935' => 'nnu', 'Nn267s45973' => 'nnu', 'Nn268s45997' => 'nnu', 'Nn272s46029' => 'nnu', 'Nn273s46041' => 'nnu', 'Nn275s46074' => 'nnu', 'Nn282s46083' => 'nnu', 'Nn284s46112' => 'nnu', 'Nn288s46165' => 'nnu', 'Nn289s46171' => 'nnu', 'Nn294s46210' => 'nnu', 'Nn299s46214' => 'nnu', 'Nn2g16035' => 'nnu', 'Nn306s46251' => 'nnu', 'Nn307s46263' => 'nnu', 'Nn310s46288' => 'nnu', 'Nn315s46312' => 'nnu', 'Nn318s46318' => 'nnu', 'Nn327s46359' => 'nnu', 'Nn329s46370' => 'nnu', 'Nn338s46400' => 'nnu', 'Nn341s46424' => 'nnu', 'Nn344s46452' => 'nnu', 'Nn352s46487' => 'nnu', 'Nn356s46503' => 'nnu', 'Nn365s46515' => 'nnu', 'Nn376s46547' => 'nnu', 'Nn3g16070' => 'nnu', 'Nn3g16104' => 'nnu', 'Nn3g20492' => 'nnu', 'Nn3g20517' => 'nnu', 'Nn3g20539' => 'nnu', 'Nn3g20842' => 'nnu', 'Nn408s46577' => 'nnu', 'Nn422s46603' => 'nnu', 'Nn437s46674' => 'nnu', 'Nn444s46696' => 'nnu', 'Nn4g25097' => 'nnu', 'Nn4g25906' => 'nnu', 'Nn5g26986' => 'nnu', 'Nn5g27006' => 'nnu', 'Nn5g27010' => 'nnu', 'Nn5g27030' => 'nnu', 'Nn5g27319' => 'nnu', 'Nn5g31172' => 'nnu', 'Nn5g31215' => 'nnu', 'Nn5g31245' => 'nnu', 'Nn5g31268' => 'nnu', 'Nn5g31286' => 'nnu', 'Nn5g31305' => 'nnu', 'Nn5g31324' => 'nnu', 'Nn5g31351' => 'nnu', 'Nn5g31380' => 'nnu', 'Nn5g31402' => 'nnu', 'Nn5g31422' => 'nnu', 'Nn5g31445' => 'nnu', 'Nn5g31458' => 'nnu', 'Nn5g31478' => 'nnu', 'Nn6g32484' => 'nnu', 'Nn6g32486' => 'nnu', 'Nn6g32509' => 'nnu', 'Nn6g32529' => 'nnu', 'Nn6g32551' => 'nnu', 'Nn6g32573' => 'nnu', 'Nn6g32595' => 'nnu', 'Nn6g32596' => 'nnu', 'Nn6g32624' => 'nnu', 'Nn6g32651' => 'nnu', 'Nn6g32672' => 'nnu', 'Nn6g32695' => 'nnu', 'Nn6g32720' => 'nnu', 'Nn6g32730' => 'nnu', 'Nn6g32754' => 'nnu', 'Nn6g32764' => 'nnu', 'Nn6g32780' => 'nnu', 'Nn6g32781' => 'nnu', 'Nn6g32802' => 'nnu', 'Nn6g32814' => 'nnu', 'Nn6g32848' => 'nnu', 'Nn6g32862' => 'nnu', 'Nn6g32883' => 'nnu', 'Nn6g32910' => 'nnu', 'Nn6g32933' => 'nnu', 'Nn6g32956' => 'nnu', 'Nn6g32975' => 'nnu', 'Nn6g32993' => 'nnu', 'Nn6g33031' => 'nnu', 'Nn6g33053' => 'nnu', 'Nn6g33061' => 'nnu', 'Nn6g33081' => 'nnu', 'Nn6g33101' => 'nnu', 'Nn6g33110' => 'nnu', 'Nn6g33129' => 'nnu', 'Nn6g33145' => 'nnu', 'Nn6g33164' => 'nnu', 'Nn6g33178' => 'nnu', 'Nn6g33216' => 'nnu', 'Nn6g33235' => 'nnu', 'Nn6g33239' => 'nnu', 'Nn8g40311' => 'nnu', 'Nn8g40335' => 'nnu', 'Nn8g41314' => 'nnu', 'Nn8g41338' => 'nnu', 'Oeu008745.1' => 'oeu', 'PGSC0003DMG400019038' => 'stu', 'PGSC0003DMG400035518' => 'stu', 'PGSC0003DMG400043383' => 'stu', 'Phvul.002G055275' => 'pvu', 'Phvul.002G055425' => 'pvu', 'Phvul.003G000434' => 'pvu', 'Phvul.003G090301' => 'pvu', 'Phvul.L002175' => 'pvu', 'Potri.008G223900' => 'ptr', 'Potri.008G224102' => 'ptr', 'Potri.008G224138' => 'ptr', 'Potri.008G224165' => 'ptr', 'Potri.008G224201' => 'ptr', 'Potri.008G224264' => 'ptr', 'Potri.008G224282' => 'ptr', 'Potri.008G224301' => 'ptr', 'Potri.008G224319' => 'ptr', 'Potri.008G224346' => 'ptr', 'Potri.008G224364' => 'ptr', 'Potri.008G224400' => 'ptr', 'Potri.008G224601' => 'ptr', 'Potri.008G225001' => 'ptr', 'Potri.008G225201' => 'ptr', 'Potri.008G225401' => 'ptr', 'Potri.014G185372' => 'ptr', 'Potri.014G185444' => 'ptr', 'Potri.014G185660' => 'ptr', 'Potri.014G185876' => 'ptr', 'Potri.014G186020' => 'ptr', 'Potri.014G186164' => 'ptr', 'Potri.014G186380' => 'ptr', 'Potri.014G186524' => 'ptr', 'Potri.014G186600' => 'ptr', 'Potri.T124505' => 'ptr', 'Sopen00g004120' => 'spe', 'Sopen00g006740' => 'spe', 'Sopen06g001500' => 'spe', 'Thhalv10028274m.g' => 'esa', 'Thhalv10028342m.g' => 'esa', 'unitig_124.g30880' => 'ugi', 'unitig_127.g34227' => 'ugi', 'unitig_135.g35479' => 'ugi', 'unitig_139.g29582' => 'ugi', 'unitig_143.g32398' => 'ugi', 'unitig_145.g32340' => 'ugi', 'unitig_145.g32367' => 'ugi', 'unitig_175.g35439' => 'ugi', 'unitig_579.g34805' => 'ugi', 'unitig_581.g33717' => 'ugi', 'unitig_583.g34786' => 'ugi', 'unitig_659.g33186' => 'ugi', 'unitig_669.g33613' => 'ugi', 'unitig_681.g32559' => 'ugi', 'unitig_685.g33134' => 'ugi', 'unitig_721.g34551' => 'ugi', 'unitig_805.g34440' => 'ugi', 'unitig_809.g34388' => 'ugi', 'unitig_830.g33044' => 'ugi', 'unitig_881.g33004' => 'ugi', 'unitig_882.g34274' => 'ugi', 'unitig_96.g33476' => 'ugi', 'Zm00001eb439550' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001319', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001319' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001319', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '475', 'num_species' => '26' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001319' ) ), 'genes' => array( 'A05p21870' => 'bna', 'A05p22140' => 'bna', 'A05p22230' => 'bna', 'A05p22420' => 'bna', 'A05p22730' => 'bna', 'A05p22740' => 'bna', 'A05p22750' => 'bna', 'A05p22760' => 'bna', 'A06p23760' => 'bna', 'A06p23900' => 'bna', 'A06p24020' => 'bna', 'A06p24050' => 'bna', 'A06p24430' => 'bna', 'A06p24440' => 'bna', 'A06p24850' => 'bna', 'A06p24920' => 'bna', 'A06p25410' => 'bna', 'A06p25480' => 'bna', 'A06p25560' => 'bna', 'A06p25670' => 'bna', 'A06p26000' => 'bna', 'A06p26080' => 'bna', 'A06p26510' => 'bna', 'A09p30660' => 'bna', 'A09p30670' => 'bna', 'Atru.chr10.44' => 'acertr', 'Atru.chr10.52' => 'acertr', 'Atru.chr12.1863' => 'acertr', 'BcaB04g16894' => 'bca', 'BcaC06g35652' => 'bca', 'BcaC06g35655' => 'bca', 'BcaC07g37373' => 'bca', 'BcaNung05730' => 'bca', 'BcaNung06258' => 'bca', 'BcaNung06496' => 'bca', 'BcaNung07277' => 'bca', 'BNapus_Darmor_BZH_scaffold_65p00080' => 'bna', 'BraA05t21122Z' => 'bra', 'BraA09t38623Z' => 'bra', 'BraA09t38635Z' => 'bra', 'BraSC65t46599Z' => 'bra', 'C02p52880' => 'bna', 'C02p52990' => 'bna', 'C07p00030' => 'bna', 'C07p12440' => 'bna', 'CARHR111740' => 'chi', 'Carub.0002s0966' => 'cru', 'Carub.0026s0006' => 'cru', 'Ca_14542_v3' => 'car', 'Ca_26109_v3' => 'car', 'Cc00_g25870' => 'ccan', 'Cfa020971' => 'cfa', 'Ciclev10029524m.g' => 'ccl', 'Ciclev10029531m.g' => 'ccl', 'CiPaw.15G100800' => 'cil', 'CiPaw.15G104600' => 'cil', 'CiPaw.15G105500' => 'cil', 'CiPaw.15G106700' => 'cil', 'CiPaw.15G110600' => 'cil', 'Duzib160G0894' => 'dzi', 'Duzib170G0310' => 'dzi', 'EL10As19g24172' => 'bvu', 'EL10As19g24179' => 'bvu', 'EL10As7g23709' => 'bvu', 'EL10As7g23710' => 'bvu', 'EL10As7g23712' => 'bvu', 'Glyma.13G011150' => 'gma', 'Glyma.13G013700' => 'gma', 'Glyma.U007802' => 'gma', 'Lj2g0014759' => 'lja', 'Lj6g0022573' => 'lja', 'LjContig00006g0020595' => 'lja', 'LjContig00371g0024011' => 'lja', 'LjContig00488g0020088' => 'lja', 'Manes.S000981' => 'mes', 'Manes.S007521' => 'mes', 'Manes.S014388' => 'mes', 'Manes.S017332' => 'mes', 'Manes.S022390' => 'mes', 'Manes.S022616' => 'mes', 'Manes.S024416' => 'mes', 'Manes.S024816' => 'mes', 'Manes.S026016' => 'mes', 'Manes.S027952' => 'mes', 'Manes.S030952' => 'mes', 'Manes.S032316' => 'mes', 'Manes.S032716' => 'mes', 'Manes.S034016' => 'mes', 'Manes.S034516' => 'mes', 'Manes.S042716' => 'mes', 'Manes.S044316' => 'mes', 'Manes.S044716' => 'mes', 'Manes.S048016' => 'mes', 'Manes.S048516' => 'mes', 'Manes.S049516' => 'mes', 'Manes.S053516' => 'mes', 'Manes.S055616' => 'mes', 'Migut.A01090' => 'egut', 'Migut.A01183' => 'egut', 'Migut.A01185' => 'egut', 'Migut.A01195' => 'egut', 'Migut.A01197' => 'egut', 'Migut.A01210' => 'egut', 'Migut.A01214' => 'egut', 'Migut.A01216' => 'egut', 'Migut.A01219' => 'egut', 'Migut.A01222' => 'egut', 'Migut.A01224' => 'egut', 'Migut.A01225' => 'egut', 'Migut.A01227' => 'egut', 'Migut.A01230' => 'egut', 'Migut.A01231' => 'egut', 'Migut.A01236' => 'egut', 'Migut.A01238' => 'egut', 'Migut.A01243' => 'egut', 'Migut.A01244' => 'egut', 'Migut.C00300' => 'egut', 'Migut.C00304' => 'egut', 'Migut.C00307' => 'egut', 'Migut.C00309' => 'egut', 'Migut.C00310' => 'egut', 'Migut.G00886' => 'egut', 'Migut.G00887' => 'egut', 'Migut.G00892' => 'egut', 'Migut.G00895' => 'egut', 'Migut.O00540' => 'egut', 'Migut.O00593' => 'egut', 'Migut.O00639' => 'egut', 'Migut.O00649' => 'egut', 'Migut.O00650' => 'egut', 'Migut.O00654' => 'egut', 'Nn038s41644' => 'nnu', 'Nn038s41666' => 'nnu', 'Nn040s41714' => 'nnu', 'Nn040s41736' => 'nnu', 'Nn040s41759' => 'nnu', 'Nn040s41782' => 'nnu', 'Nn046s41834' => 'nnu', 'Nn046s41857' => 'nnu', 'Nn046s41903' => 'nnu', 'Nn058s41950' => 'nnu', 'Nn058s41972' => 'nnu', 'Nn058s41995' => 'nnu', 'Nn059s42013' => 'nnu', 'Nn059s42036' => 'nnu', 'Nn059s42059' => 'nnu', 'Nn061s42083' => 'nnu', 'Nn061s42106' => 'nnu', 'Nn061s42129' => 'nnu', 'Nn062s42139' => 'nnu', 'Nn062s42162' => 'nnu', 'Nn062s42184' => 'nnu', 'Nn062s42205' => 'nnu', 'Nn067s42243' => 'nnu', 'Nn067s42265' => 'nnu', 'Nn067s42288' => 'nnu', 'Nn069s42306' => 'nnu', 'Nn069s42330' => 'nnu', 'Nn069s42353' => 'nnu', 'Nn072s42412' => 'nnu', 'Nn072s42434' => 'nnu', 'Nn072s42456' => 'nnu', 'Nn076s42483' => 'nnu', 'Nn076s42506' => 'nnu', 'Nn076s42528' => 'nnu', 'Nn077s42548' => 'nnu', 'Nn077s42571' => 'nnu', 'Nn078s42625' => 'nnu', 'Nn078s42647' => 'nnu', 'Nn078s42670' => 'nnu', 'Nn085s42691' => 'nnu', 'Nn085s42715' => 'nnu', 'Nn085s42723' => 'nnu', 'Nn085s42744' => 'nnu', 'Nn087s42767' => 'nnu', 'Nn087s42789' => 'nnu', 'Nn087s42811' => 'nnu', 'Nn090s42829' => 'nnu', 'Nn090s42852' => 'nnu', 'Nn094s42903' => 'nnu', 'Nn094s42905' => 'nnu', 'Nn094s42928' => 'nnu', 'Nn095s42960' => 'nnu', 'Nn095s42982' => 'nnu', 'Nn095s43004' => 'nnu', 'Nn097s43021' => 'nnu', 'Nn097s43045' => 'nnu', 'Nn097s43067' => 'nnu', 'Nn098s43077' => 'nnu', 'Nn098s43100' => 'nnu', 'Nn104s43142' => 'nnu', 'Nn104s43144' => 'nnu', 'Nn104s43167' => 'nnu', 'Nn105s43198' => 'nnu', 'Nn105s43220' => 'nnu', 'Nn108s43265' => 'nnu', 'Nn108s43287' => 'nnu', 'Nn110s43325' => 'nnu', 'Nn110s43348' => 'nnu', 'Nn116s43391' => 'nnu', 'Nn116s43412' => 'nnu', 'Nn119s43435' => 'nnu', 'Nn119s43458' => 'nnu', 'Nn122s43480' => 'nnu', 'Nn122s43503' => 'nnu', 'Nn122s43526' => 'nnu', 'Nn124s43533' => 'nnu', 'Nn124s43556' => 'nnu', 'Nn124s43578' => 'nnu', 'Nn125s43581' => 'nnu', 'Nn125s43605' => 'nnu', 'Nn125s43627' => 'nnu', 'Nn126s43636' => 'nnu', 'Nn126s43659' => 'nnu', 'Nn126s43681' => 'nnu', 'Nn129s43711' => 'nnu', 'Nn129s43734' => 'nnu', 'Nn130s43760' => 'nnu', 'Nn130s43782' => 'nnu', 'Nn136s43815' => 'nnu', 'Nn136s43838' => 'nnu', 'Nn137s43873' => 'nnu', 'Nn137s43896' => 'nnu', 'Nn139s43918' => 'nnu', 'Nn139s43940' => 'nnu', 'Nn141s43972' => 'nnu', 'Nn142s44009' => 'nnu', 'Nn142s44031' => 'nnu', 'Nn143s44062' => 'nnu', 'Nn143s44084' => 'nnu', 'Nn148s44117' => 'nnu', 'Nn148s44139' => 'nnu', 'Nn151s44157' => 'nnu', 'Nn151s44179' => 'nnu', 'Nn152s44203' => 'nnu', 'Nn152s44225' => 'nnu', 'Nn153s44234' => 'nnu', 'Nn153s44257' => 'nnu', 'Nn157s44314' => 'nnu', 'Nn157s44336' => 'nnu', 'Nn159s44360' => 'nnu', 'Nn159s44383' => 'nnu', 'Nn165s44407' => 'nnu', 'Nn165s44429' => 'nnu', 'Nn167s44457' => 'nnu', 'Nn167s44479' => 'nnu', 'Nn175s44513' => 'nnu', 'Nn175s44527' => 'nnu', 'Nn177s44543' => 'nnu', 'Nn177s44566' => 'nnu', 'Nn178s44589' => 'nnu', 'Nn178s44612' => 'nnu', 'Nn185s44631' => 'nnu', 'Nn185s44654' => 'nnu', 'Nn188s44678' => 'nnu', 'Nn188s44700' => 'nnu', 'Nn189s44714' => 'nnu', 'Nn189s44737' => 'nnu', 'Nn190s44751' => 'nnu', 'Nn190s44774' => 'nnu', 'Nn194s44792' => 'nnu', 'Nn194s44816' => 'nnu', 'Nn195s44835' => 'nnu', 'Nn196s44851' => 'nnu', 'Nn196s44873' => 'nnu', 'Nn1g00031' => 'nnu', 'Nn200s44898' => 'nnu', 'Nn201s44929' => 'nnu', 'Nn201s44953' => 'nnu', 'Nn202s44970' => 'nnu', 'Nn202s44992' => 'nnu', 'Nn203s45003' => 'nnu', 'Nn203s45026' => 'nnu', 'Nn204s45052' => 'nnu', 'Nn207s45074' => 'nnu', 'Nn207s45096' => 'nnu', 'Nn208s45127' => 'nnu', 'Nn209s45139' => 'nnu', 'Nn209s45161' => 'nnu', 'Nn210s45171' => 'nnu', 'Nn210s45193' => 'nnu', 'Nn213s45230' => 'nnu', 'Nn217s45254' => 'nnu', 'Nn217s45279' => 'nnu', 'Nn220s45310' => 'nnu', 'Nn221s45332' => 'nnu', 'Nn222s45352' => 'nnu', 'Nn222s45376' => 'nnu', 'Nn223s45384' => 'nnu', 'Nn223s45406' => 'nnu', 'Nn224s45434' => 'nnu', 'Nn227s45465' => 'nnu', 'Nn229s45495' => 'nnu', 'Nn230s45539' => 'nnu', 'Nn236s45578' => 'nnu', 'Nn237s45609' => 'nnu', 'Nn238s45634' => 'nnu', 'Nn240s45670' => 'nnu', 'Nn242s45698' => 'nnu', 'Nn244s45739' => 'nnu', 'Nn245s45753' => 'nnu', 'Nn245s45775' => 'nnu', 'Nn246s45793' => 'nnu', 'Nn247s45802' => 'nnu', 'Nn247s45826' => 'nnu', 'Nn250s45848' => 'nnu', 'Nn251s45860' => 'nnu', 'Nn252s45895' => 'nnu', 'Nn260s45912' => 'nnu', 'Nn260s45935' => 'nnu', 'Nn267s45973' => 'nnu', 'Nn268s45997' => 'nnu', 'Nn272s46029' => 'nnu', 'Nn273s46041' => 'nnu', 'Nn275s46074' => 'nnu', 'Nn282s46083' => 'nnu', 'Nn284s46112' => 'nnu', 'Nn288s46165' => 'nnu', 'Nn289s46171' => 'nnu', 'Nn294s46210' => 'nnu', 'Nn299s46214' => 'nnu', 'Nn2g16035' => 'nnu', 'Nn306s46251' => 'nnu', 'Nn307s46263' => 'nnu', 'Nn310s46288' => 'nnu', 'Nn315s46312' => 'nnu', 'Nn318s46318' => 'nnu', 'Nn327s46359' => 'nnu', 'Nn329s46370' => 'nnu', 'Nn338s46400' => 'nnu', 'Nn341s46424' => 'nnu', 'Nn344s46452' => 'nnu', 'Nn352s46487' => 'nnu', 'Nn356s46503' => 'nnu', 'Nn365s46515' => 'nnu', 'Nn376s46547' => 'nnu', 'Nn3g16070' => 'nnu', 'Nn3g16104' => 'nnu', 'Nn3g20492' => 'nnu', 'Nn3g20517' => 'nnu', 'Nn3g20539' => 'nnu', 'Nn3g20842' => 'nnu', 'Nn408s46577' => 'nnu', 'Nn422s46603' => 'nnu', 'Nn437s46674' => 'nnu', 'Nn444s46696' => 'nnu', 'Nn4g25097' => 'nnu', 'Nn4g25906' => 'nnu', 'Nn5g26986' => 'nnu', 'Nn5g27006' => 'nnu', 'Nn5g27010' => 'nnu', 'Nn5g27030' => 'nnu', 'Nn5g27319' => 'nnu', 'Nn5g31172' => 'nnu', 'Nn5g31215' => 'nnu', 'Nn5g31245' => 'nnu', 'Nn5g31268' => 'nnu', 'Nn5g31286' => 'nnu', 'Nn5g31305' => 'nnu', 'Nn5g31324' => 'nnu', 'Nn5g31351' => 'nnu', 'Nn5g31380' => 'nnu', 'Nn5g31402' => 'nnu', 'Nn5g31422' => 'nnu', 'Nn5g31445' => 'nnu', 'Nn5g31458' => 'nnu', 'Nn5g31478' => 'nnu', 'Nn6g32484' => 'nnu', 'Nn6g32486' => 'nnu', 'Nn6g32509' => 'nnu', 'Nn6g32529' => 'nnu', 'Nn6g32551' => 'nnu', 'Nn6g32573' => 'nnu', 'Nn6g32595' => 'nnu', 'Nn6g32596' => 'nnu', 'Nn6g32624' => 'nnu', 'Nn6g32651' => 'nnu', 'Nn6g32672' => 'nnu', 'Nn6g32695' => 'nnu', 'Nn6g32720' => 'nnu', 'Nn6g32730' => 'nnu', 'Nn6g32754' => 'nnu', 'Nn6g32764' => 'nnu', 'Nn6g32780' => 'nnu', 'Nn6g32781' => 'nnu', 'Nn6g32802' => 'nnu', 'Nn6g32814' => 'nnu', 'Nn6g32848' => 'nnu', 'Nn6g32862' => 'nnu', 'Nn6g32883' => 'nnu', 'Nn6g32910' => 'nnu', 'Nn6g32933' => 'nnu', 'Nn6g32956' => 'nnu', 'Nn6g32975' => 'nnu', 'Nn6g32993' => 'nnu', 'Nn6g33031' => 'nnu', 'Nn6g33053' => 'nnu', 'Nn6g33061' => 'nnu', 'Nn6g33081' => 'nnu', 'Nn6g33101' => 'nnu', 'Nn6g33110' => 'nnu', 'Nn6g33129' => 'nnu', 'Nn6g33145' => 'nnu', 'Nn6g33164' => 'nnu', 'Nn6g33178' => 'nnu', 'Nn6g33216' => 'nnu', 'Nn6g33235' => 'nnu', 'Nn6g33239' => 'nnu', 'Nn8g40311' => 'nnu', 'Nn8g40335' => 'nnu', 'Nn8g41314' => 'nnu', 'Nn8g41338' => 'nnu', 'Oeu008745.1' => 'oeu', 'PGSC0003DMG400019038' => 'stu', 'PGSC0003DMG400035518' => 'stu', 'PGSC0003DMG400043383' => 'stu', 'Phvul.002G055275' => 'pvu', 'Phvul.002G055425' => 'pvu', 'Phvul.003G000434' => 'pvu', 'Phvul.003G090301' => 'pvu', 'Phvul.L002175' => 'pvu', 'Potri.008G223900' => 'ptr', 'Potri.008G224102' => 'ptr', 'Potri.008G224138' => 'ptr', 'Potri.008G224165' => 'ptr', 'Potri.008G224201' => 'ptr', 'Potri.008G224264' => 'ptr', 'Potri.008G224282' => 'ptr', 'Potri.008G224301' => 'ptr', 'Potri.008G224319' => 'ptr', 'Potri.008G224346' => 'ptr', 'Potri.008G224364' => 'ptr', 'Potri.008G224400' => 'ptr', 'Potri.008G224601' => 'ptr', 'Potri.008G225001' => 'ptr', 'Potri.008G225201' => 'ptr', 'Potri.008G225401' => 'ptr', 'Potri.014G185372' => 'ptr', 'Potri.014G185444' => 'ptr', 'Potri.014G185660' => 'ptr', 'Potri.014G185876' => 'ptr', 'Potri.014G186020' => 'ptr', 'Potri.014G186164' => 'ptr', 'Potri.014G186380' => 'ptr', 'Potri.014G186524' => 'ptr', 'Potri.014G186600' => 'ptr', 'Potri.T124505' => 'ptr', 'Sopen00g004120' => 'spe', 'Sopen00g006740' => 'spe', 'Sopen06g001500' => 'spe', 'Thhalv10028274m.g' => 'esa', 'Thhalv10028342m.g' => 'esa', 'unitig_124.g30880' => 'ugi', 'unitig_127.g34227' => 'ugi', 'unitig_135.g35479' => 'ugi', 'unitig_139.g29582' => 'ugi', 'unitig_143.g32398' => 'ugi', 'unitig_145.g32340' => 'ugi', 'unitig_145.g32367' => 'ugi', 'unitig_175.g35439' => 'ugi', 'unitig_579.g34805' => 'ugi', 'unitig_581.g33717' => 'ugi', 'unitig_583.g34786' => 'ugi', 'unitig_659.g33186' => 'ugi', 'unitig_669.g33613' => 'ugi', 'unitig_681.g32559' => 'ugi', 'unitig_685.g33134' => 'ugi', 'unitig_721.g34551' => 'ugi', 'unitig_805.g34440' => 'ugi', 'unitig_809.g34388' => 'ugi', 'unitig_830.g33044' => 'ugi', 'unitig_881.g33004' => 'ugi', 'unitig_882.g34274' => 'ugi', 'unitig_96.g33476' => 'ugi', 'Zm00001eb439550' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001319' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001319' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001319' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001319' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001319', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '475', 'num_species' => '26' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A05p21870' => 'bna', 'A05p22140' => 'bna', 'A05p22230' => 'bna', 'A05p22420' => 'bna', 'A05p22730' => 'bna', 'A05p22740' => 'bna', 'A05p22750' => 'bna', 'A05p22760' => 'bna', 'A06p23760' => 'bna', 'A06p23900' => 'bna', 'A06p24020' => 'bna', 'A06p24050' => 'bna', 'A06p24430' => 'bna', 'A06p24440' => 'bna', 'A06p24850' => 'bna', 'A06p24920' => 'bna', 'A06p25410' => 'bna', 'A06p25480' => 'bna', 'A06p25560' => 'bna', 'A06p25670' => 'bna', 'A06p26000' => 'bna', 'A06p26080' => 'bna', 'A06p26510' => 'bna', 'A09p30660' => 'bna', 'A09p30670' => 'bna', 'Atru.chr10.44' => 'acertr', 'Atru.chr10.52' => 'acertr', 'Atru.chr12.1863' => 'acertr', 'BcaB04g16894' => 'bca', 'BcaC06g35652' => 'bca', 'BcaC06g35655' => 'bca', 'BcaC07g37373' => 'bca', 'BcaNung05730' => 'bca', 'BcaNung06258' => 'bca', 'BcaNung06496' => 'bca', 'BcaNung07277' => 'bca', 'BNapus_Darmor_BZH_scaffold_65p00080' => 'bna', 'BraA05t21122Z' => 'bra', 'BraA09t38623Z' => 'bra', 'BraA09t38635Z' => 'bra', 'BraSC65t46599Z' => 'bra', 'C02p52880' => 'bna', 'C02p52990' => 'bna', 'C07p00030' => 'bna', 'C07p12440' => 'bna', 'CARHR111740' => 'chi', 'Carub.0002s0966' => 'cru', 'Carub.0026s0006' => 'cru', 'Ca_14542_v3' => 'car', 'Ca_26109_v3' => 'car', 'Cc00_g25870' => 'ccan', 'Cfa020971' => 'cfa', 'Ciclev10029524m.g' => 'ccl', 'Ciclev10029531m.g' => 'ccl', 'CiPaw.15G100800' => 'cil', 'CiPaw.15G104600' => 'cil', 'CiPaw.15G105500' => 'cil', 'CiPaw.15G106700' => 'cil', 'CiPaw.15G110600' => 'cil', 'Duzib160G0894' => 'dzi', 'Duzib170G0310' => 'dzi', 'EL10As19g24172' => 'bvu', 'EL10As19g24179' => 'bvu', 'EL10As7g23709' => 'bvu', 'EL10As7g23710' => 'bvu', 'EL10As7g23712' => 'bvu', 'Glyma.13G011150' => 'gma', 'Glyma.13G013700' => 'gma', 'Glyma.U007802' => 'gma', 'Lj2g0014759' => 'lja', 'Lj6g0022573' => 'lja', 'LjContig00006g0020595' => 'lja', 'LjContig00371g0024011' => 'lja', 'LjContig00488g0020088' => 'lja', 'Manes.S000981' => 'mes', 'Manes.S007521' => 'mes', 'Manes.S014388' => 'mes', 'Manes.S017332' => 'mes', 'Manes.S022390' => 'mes', 'Manes.S022616' => 'mes', 'Manes.S024416' => 'mes', 'Manes.S024816' => 'mes', 'Manes.S026016' => 'mes', 'Manes.S027952' => 'mes', 'Manes.S030952' => 'mes', 'Manes.S032316' => 'mes', 'Manes.S032716' => 'mes', 'Manes.S034016' => 'mes', 'Manes.S034516' => 'mes', 'Manes.S042716' => 'mes', 'Manes.S044316' => 'mes', 'Manes.S044716' => 'mes', 'Manes.S048016' => 'mes', 'Manes.S048516' => 'mes', 'Manes.S049516' => 'mes', 'Manes.S053516' => 'mes', 'Manes.S055616' => 'mes', 'Migut.A01090' => 'egut', 'Migut.A01183' => 'egut', 'Migut.A01185' => 'egut', 'Migut.A01195' => 'egut', 'Migut.A01197' => 'egut', 'Migut.A01210' => 'egut', 'Migut.A01214' => 'egut', 'Migut.A01216' => 'egut', 'Migut.A01219' => 'egut', 'Migut.A01222' => 'egut', 'Migut.A01224' => 'egut', 'Migut.A01225' => 'egut', 'Migut.A01227' => 'egut', 'Migut.A01230' => 'egut', 'Migut.A01231' => 'egut', 'Migut.A01236' => 'egut', 'Migut.A01238' => 'egut', 'Migut.A01243' => 'egut', 'Migut.A01244' => 'egut', 'Migut.C00300' => 'egut', 'Migut.C00304' => 'egut', 'Migut.C00307' => 'egut', 'Migut.C00309' => 'egut', 'Migut.C00310' => 'egut', 'Migut.G00886' => 'egut', 'Migut.G00887' => 'egut', 'Migut.G00892' => 'egut', 'Migut.G00895' => 'egut', 'Migut.O00540' => 'egut', 'Migut.O00593' => 'egut', 'Migut.O00639' => 'egut', 'Migut.O00649' => 'egut', 'Migut.O00650' => 'egut', 'Migut.O00654' => 'egut', 'Nn038s41644' => 'nnu', 'Nn038s41666' => 'nnu', 'Nn040s41714' => 'nnu', 'Nn040s41736' => 'nnu', 'Nn040s41759' => 'nnu', 'Nn040s41782' => 'nnu', 'Nn046s41834' => 'nnu', 'Nn046s41857' => 'nnu', 'Nn046s41903' => 'nnu', 'Nn058s41950' => 'nnu', 'Nn058s41972' => 'nnu', 'Nn058s41995' => 'nnu', 'Nn059s42013' => 'nnu', 'Nn059s42036' => 'nnu', 'Nn059s42059' => 'nnu', 'Nn061s42083' => 'nnu', 'Nn061s42106' => 'nnu', 'Nn061s42129' => 'nnu', 'Nn062s42139' => 'nnu', 'Nn062s42162' => 'nnu', 'Nn062s42184' => 'nnu', 'Nn062s42205' => 'nnu', 'Nn067s42243' => 'nnu', 'Nn067s42265' => 'nnu', 'Nn067s42288' => 'nnu', 'Nn069s42306' => 'nnu', 'Nn069s42330' => 'nnu', 'Nn069s42353' => 'nnu', 'Nn072s42412' => 'nnu', 'Nn072s42434' => 'nnu', 'Nn072s42456' => 'nnu', 'Nn076s42483' => 'nnu', 'Nn076s42506' => 'nnu', 'Nn076s42528' => 'nnu', 'Nn077s42548' => 'nnu', 'Nn077s42571' => 'nnu', 'Nn078s42625' => 'nnu', 'Nn078s42647' => 'nnu', 'Nn078s42670' => 'nnu', 'Nn085s42691' => 'nnu', 'Nn085s42715' => 'nnu', 'Nn085s42723' => 'nnu', 'Nn085s42744' => 'nnu', 'Nn087s42767' => 'nnu', 'Nn087s42789' => 'nnu', 'Nn087s42811' => 'nnu', 'Nn090s42829' => 'nnu', 'Nn090s42852' => 'nnu', 'Nn094s42903' => 'nnu', 'Nn094s42905' => 'nnu', 'Nn094s42928' => 'nnu', 'Nn095s42960' => 'nnu', 'Nn095s42982' => 'nnu', 'Nn095s43004' => 'nnu', 'Nn097s43021' => 'nnu', 'Nn097s43045' => 'nnu', 'Nn097s43067' => 'nnu', 'Nn098s43077' => 'nnu', 'Nn098s43100' => 'nnu', 'Nn104s43142' => 'nnu', 'Nn104s43144' => 'nnu', 'Nn104s43167' => 'nnu', 'Nn105s43198' => 'nnu', 'Nn105s43220' => 'nnu', 'Nn108s43265' => 'nnu', 'Nn108s43287' => 'nnu', 'Nn110s43325' => 'nnu', 'Nn110s43348' => 'nnu', 'Nn116s43391' => 'nnu', 'Nn116s43412' => 'nnu', 'Nn119s43435' => 'nnu', 'Nn119s43458' => 'nnu', 'Nn122s43480' => 'nnu', 'Nn122s43503' => 'nnu', 'Nn122s43526' => 'nnu', 'Nn124s43533' => 'nnu', 'Nn124s43556' => 'nnu', 'Nn124s43578' => 'nnu', 'Nn125s43581' => 'nnu', 'Nn125s43605' => 'nnu', 'Nn125s43627' => 'nnu', 'Nn126s43636' => 'nnu', 'Nn126s43659' => 'nnu', 'Nn126s43681' => 'nnu', 'Nn129s43711' => 'nnu', 'Nn129s43734' => 'nnu', 'Nn130s43760' => 'nnu', 'Nn130s43782' => 'nnu', 'Nn136s43815' => 'nnu', 'Nn136s43838' => 'nnu', 'Nn137s43873' => 'nnu', 'Nn137s43896' => 'nnu', 'Nn139s43918' => 'nnu', 'Nn139s43940' => 'nnu', 'Nn141s43972' => 'nnu', 'Nn142s44009' => 'nnu', 'Nn142s44031' => 'nnu', 'Nn143s44062' => 'nnu', 'Nn143s44084' => 'nnu', 'Nn148s44117' => 'nnu', 'Nn148s44139' => 'nnu', 'Nn151s44157' => 'nnu', 'Nn151s44179' => 'nnu', 'Nn152s44203' => 'nnu', 'Nn152s44225' => 'nnu', 'Nn153s44234' => 'nnu', 'Nn153s44257' => 'nnu', 'Nn157s44314' => 'nnu', 'Nn157s44336' => 'nnu', 'Nn159s44360' => 'nnu', 'Nn159s44383' => 'nnu', 'Nn165s44407' => 'nnu', 'Nn165s44429' => 'nnu', 'Nn167s44457' => 'nnu', 'Nn167s44479' => 'nnu', 'Nn175s44513' => 'nnu', 'Nn175s44527' => 'nnu', 'Nn177s44543' => 'nnu', 'Nn177s44566' => 'nnu', 'Nn178s44589' => 'nnu', 'Nn178s44612' => 'nnu', 'Nn185s44631' => 'nnu', 'Nn185s44654' => 'nnu', 'Nn188s44678' => 'nnu', 'Nn188s44700' => 'nnu', 'Nn189s44714' => 'nnu', 'Nn189s44737' => 'nnu', 'Nn190s44751' => 'nnu', 'Nn190s44774' => 'nnu', 'Nn194s44792' => 'nnu', 'Nn194s44816' => 'nnu', 'Nn195s44835' => 'nnu', 'Nn196s44851' => 'nnu', 'Nn196s44873' => 'nnu', 'Nn1g00031' => 'nnu', 'Nn200s44898' => 'nnu', 'Nn201s44929' => 'nnu', 'Nn201s44953' => 'nnu', 'Nn202s44970' => 'nnu', 'Nn202s44992' => 'nnu', 'Nn203s45003' => 'nnu', 'Nn203s45026' => 'nnu', 'Nn204s45052' => 'nnu', 'Nn207s45074' => 'nnu', 'Nn207s45096' => 'nnu', 'Nn208s45127' => 'nnu', 'Nn209s45139' => 'nnu', 'Nn209s45161' => 'nnu', 'Nn210s45171' => 'nnu', 'Nn210s45193' => 'nnu', 'Nn213s45230' => 'nnu', 'Nn217s45254' => 'nnu', 'Nn217s45279' => 'nnu', 'Nn220s45310' => 'nnu', 'Nn221s45332' => 'nnu', 'Nn222s45352' => 'nnu', 'Nn222s45376' => 'nnu', 'Nn223s45384' => 'nnu', 'Nn223s45406' => 'nnu', 'Nn224s45434' => 'nnu', 'Nn227s45465' => 'nnu', 'Nn229s45495' => 'nnu', 'Nn230s45539' => 'nnu', 'Nn236s45578' => 'nnu', 'Nn237s45609' => 'nnu', 'Nn238s45634' => 'nnu', 'Nn240s45670' => 'nnu', 'Nn242s45698' => 'nnu', 'Nn244s45739' => 'nnu', 'Nn245s45753' => 'nnu', 'Nn245s45775' => 'nnu', 'Nn246s45793' => 'nnu', 'Nn247s45802' => 'nnu', 'Nn247s45826' => 'nnu', 'Nn250s45848' => 'nnu', 'Nn251s45860' => 'nnu', 'Nn252s45895' => 'nnu', 'Nn260s45912' => 'nnu', 'Nn260s45935' => 'nnu', 'Nn267s45973' => 'nnu', 'Nn268s45997' => 'nnu', 'Nn272s46029' => 'nnu', 'Nn273s46041' => 'nnu', 'Nn275s46074' => 'nnu', 'Nn282s46083' => 'nnu', 'Nn284s46112' => 'nnu', 'Nn288s46165' => 'nnu', 'Nn289s46171' => 'nnu', 'Nn294s46210' => 'nnu', 'Nn299s46214' => 'nnu', 'Nn2g16035' => 'nnu', 'Nn306s46251' => 'nnu', 'Nn307s46263' => 'nnu', 'Nn310s46288' => 'nnu', 'Nn315s46312' => 'nnu', 'Nn318s46318' => 'nnu', 'Nn327s46359' => 'nnu', 'Nn329s46370' => 'nnu', 'Nn338s46400' => 'nnu', 'Nn341s46424' => 'nnu', 'Nn344s46452' => 'nnu', 'Nn352s46487' => 'nnu', 'Nn356s46503' => 'nnu', 'Nn365s46515' => 'nnu', 'Nn376s46547' => 'nnu', 'Nn3g16070' => 'nnu', 'Nn3g16104' => 'nnu', 'Nn3g20492' => 'nnu', 'Nn3g20517' => 'nnu', 'Nn3g20539' => 'nnu', 'Nn3g20842' => 'nnu', 'Nn408s46577' => 'nnu', 'Nn422s46603' => 'nnu', 'Nn437s46674' => 'nnu', 'Nn444s46696' => 'nnu', 'Nn4g25097' => 'nnu', 'Nn4g25906' => 'nnu', 'Nn5g26986' => 'nnu', 'Nn5g27006' => 'nnu', 'Nn5g27010' => 'nnu', 'Nn5g27030' => 'nnu', 'Nn5g27319' => 'nnu', 'Nn5g31172' => 'nnu', 'Nn5g31215' => 'nnu', 'Nn5g31245' => 'nnu', 'Nn5g31268' => 'nnu', 'Nn5g31286' => 'nnu', 'Nn5g31305' => 'nnu', 'Nn5g31324' => 'nnu', 'Nn5g31351' => 'nnu', 'Nn5g31380' => 'nnu', 'Nn5g31402' => 'nnu', 'Nn5g31422' => 'nnu', 'Nn5g31445' => 'nnu', 'Nn5g31458' => 'nnu', 'Nn5g31478' => 'nnu', 'Nn6g32484' => 'nnu', 'Nn6g32486' => 'nnu', 'Nn6g32509' => 'nnu', 'Nn6g32529' => 'nnu', 'Nn6g32551' => 'nnu', 'Nn6g32573' => 'nnu', 'Nn6g32595' => 'nnu', 'Nn6g32596' => 'nnu', 'Nn6g32624' => 'nnu', 'Nn6g32651' => 'nnu', 'Nn6g32672' => 'nnu', 'Nn6g32695' => 'nnu', 'Nn6g32720' => 'nnu', 'Nn6g32730' => 'nnu', 'Nn6g32754' => 'nnu', 'Nn6g32764' => 'nnu', 'Nn6g32780' => 'nnu', 'Nn6g32781' => 'nnu', 'Nn6g32802' => 'nnu', 'Nn6g32814' => 'nnu', 'Nn6g32848' => 'nnu', 'Nn6g32862' => 'nnu', 'Nn6g32883' => 'nnu', 'Nn6g32910' => 'nnu', 'Nn6g32933' => 'nnu', 'Nn6g32956' => 'nnu', 'Nn6g32975' => 'nnu', 'Nn6g32993' => 'nnu', 'Nn6g33031' => 'nnu', 'Nn6g33053' => 'nnu', 'Nn6g33061' => 'nnu', 'Nn6g33081' => 'nnu', 'Nn6g33101' => 'nnu', 'Nn6g33110' => 'nnu', 'Nn6g33129' => 'nnu', 'Nn6g33145' => 'nnu', 'Nn6g33164' => 'nnu', 'Nn6g33178' => 'nnu', 'Nn6g33216' => 'nnu', 'Nn6g33235' => 'nnu', 'Nn6g33239' => 'nnu', 'Nn8g40311' => 'nnu', 'Nn8g40335' => 'nnu', 'Nn8g41314' => 'nnu', 'Nn8g41338' => 'nnu', 'Oeu008745.1' => 'oeu', 'PGSC0003DMG400019038' => 'stu', 'PGSC0003DMG400035518' => 'stu', 'PGSC0003DMG400043383' => 'stu', 'Phvul.002G055275' => 'pvu', 'Phvul.002G055425' => 'pvu', 'Phvul.003G000434' => 'pvu', 'Phvul.003G090301' => 'pvu', 'Phvul.L002175' => 'pvu', 'Potri.008G223900' => 'ptr', 'Potri.008G224102' => 'ptr', 'Potri.008G224138' => 'ptr', 'Potri.008G224165' => 'ptr', 'Potri.008G224201' => 'ptr', 'Potri.008G224264' => 'ptr', 'Potri.008G224282' => 'ptr', 'Potri.008G224301' => 'ptr', 'Potri.008G224319' => 'ptr', 'Potri.008G224346' => 'ptr', 'Potri.008G224364' => 'ptr', 'Potri.008G224400' => 'ptr', 'Potri.008G224601' => 'ptr', 'Potri.008G225001' => 'ptr', 'Potri.008G225201' => 'ptr', 'Potri.008G225401' => 'ptr', 'Potri.014G185372' => 'ptr', 'Potri.014G185444' => 'ptr', 'Potri.014G185660' => 'ptr', 'Potri.014G185876' => 'ptr', 'Potri.014G186020' => 'ptr', 'Potri.014G186164' => 'ptr', 'Potri.014G186380' => 'ptr', 'Potri.014G186524' => 'ptr', 'Potri.014G186600' => 'ptr', 'Potri.T124505' => 'ptr', 'Sopen00g004120' => 'spe', 'Sopen00g006740' => 'spe', 'Sopen06g001500' => 'spe', 'Thhalv10028274m.g' => 'esa', 'Thhalv10028342m.g' => 'esa', 'unitig_124.g30880' => 'ugi', 'unitig_127.g34227' => 'ugi', 'unitig_135.g35479' => 'ugi', 'unitig_139.g29582' => 'ugi', 'unitig_143.g32398' => 'ugi', 'unitig_145.g32340' => 'ugi', 'unitig_145.g32367' => 'ugi', 'unitig_175.g35439' => 'ugi', 'unitig_579.g34805' => 'ugi', 'unitig_581.g33717' => 'ugi', 'unitig_583.g34786' => 'ugi', 'unitig_659.g33186' => 'ugi', 'unitig_669.g33613' => 'ugi', 'unitig_681.g32559' => 'ugi', 'unitig_685.g33134' => 'ugi', 'unitig_721.g34551' => 'ugi', 'unitig_805.g34440' => 'ugi', 'unitig_809.g34388' => 'ugi', 'unitig_830.g33044' => 'ugi', 'unitig_881.g33004' => 'ugi', 'unitig_882.g34274' => 'ugi', 'unitig_96.g33476' => 'ugi', 'Zm00001eb439550' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001319', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001319' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001319', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '475', 'num_species' => '26' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001319' ) ), 'genes' => array( 'A05p21870' => 'bna', 'A05p22140' => 'bna', 'A05p22230' => 'bna', 'A05p22420' => 'bna', 'A05p22730' => 'bna', 'A05p22740' => 'bna', 'A05p22750' => 'bna', 'A05p22760' => 'bna', 'A06p23760' => 'bna', 'A06p23900' => 'bna', 'A06p24020' => 'bna', 'A06p24050' => 'bna', 'A06p24430' => 'bna', 'A06p24440' => 'bna', 'A06p24850' => 'bna', 'A06p24920' => 'bna', 'A06p25410' => 'bna', 'A06p25480' => 'bna', 'A06p25560' => 'bna', 'A06p25670' => 'bna', 'A06p26000' => 'bna', 'A06p26080' => 'bna', 'A06p26510' => 'bna', 'A09p30660' => 'bna', 'A09p30670' => 'bna', 'Atru.chr10.44' => 'acertr', 'Atru.chr10.52' => 'acertr', 'Atru.chr12.1863' => 'acertr', 'BcaB04g16894' => 'bca', 'BcaC06g35652' => 'bca', 'BcaC06g35655' => 'bca', 'BcaC07g37373' => 'bca', 'BcaNung05730' => 'bca', 'BcaNung06258' => 'bca', 'BcaNung06496' => 'bca', 'BcaNung07277' => 'bca', 'BNapus_Darmor_BZH_scaffold_65p00080' => 'bna', 'BraA05t21122Z' => 'bra', 'BraA09t38623Z' => 'bra', 'BraA09t38635Z' => 'bra', 'BraSC65t46599Z' => 'bra', 'C02p52880' => 'bna', 'C02p52990' => 'bna', 'C07p00030' => 'bna', 'C07p12440' => 'bna', 'CARHR111740' => 'chi', 'Carub.0002s0966' => 'cru', 'Carub.0026s0006' => 'cru', 'Ca_14542_v3' => 'car', 'Ca_26109_v3' => 'car', 'Cc00_g25870' => 'ccan', 'Cfa020971' => 'cfa', 'Ciclev10029524m.g' => 'ccl', 'Ciclev10029531m.g' => 'ccl', 'CiPaw.15G100800' => 'cil', 'CiPaw.15G104600' => 'cil', 'CiPaw.15G105500' => 'cil', 'CiPaw.15G106700' => 'cil', 'CiPaw.15G110600' => 'cil', 'Duzib160G0894' => 'dzi', 'Duzib170G0310' => 'dzi', 'EL10As19g24172' => 'bvu', 'EL10As19g24179' => 'bvu', 'EL10As7g23709' => 'bvu', 'EL10As7g23710' => 'bvu', 'EL10As7g23712' => 'bvu', 'Glyma.13G011150' => 'gma', 'Glyma.13G013700' => 'gma', 'Glyma.U007802' => 'gma', 'Lj2g0014759' => 'lja', 'Lj6g0022573' => 'lja', 'LjContig00006g0020595' => 'lja', 'LjContig00371g0024011' => 'lja', 'LjContig00488g0020088' => 'lja', 'Manes.S000981' => 'mes', 'Manes.S007521' => 'mes', 'Manes.S014388' => 'mes', 'Manes.S017332' => 'mes', 'Manes.S022390' => 'mes', 'Manes.S022616' => 'mes', 'Manes.S024416' => 'mes', 'Manes.S024816' => 'mes', 'Manes.S026016' => 'mes', 'Manes.S027952' => 'mes', 'Manes.S030952' => 'mes', 'Manes.S032316' => 'mes', 'Manes.S032716' => 'mes', 'Manes.S034016' => 'mes', 'Manes.S034516' => 'mes', 'Manes.S042716' => 'mes', 'Manes.S044316' => 'mes', 'Manes.S044716' => 'mes', 'Manes.S048016' => 'mes', 'Manes.S048516' => 'mes', 'Manes.S049516' => 'mes', 'Manes.S053516' => 'mes', 'Manes.S055616' => 'mes', 'Migut.A01090' => 'egut', 'Migut.A01183' => 'egut', 'Migut.A01185' => 'egut', 'Migut.A01195' => 'egut', 'Migut.A01197' => 'egut', 'Migut.A01210' => 'egut', 'Migut.A01214' => 'egut', 'Migut.A01216' => 'egut', 'Migut.A01219' => 'egut', 'Migut.A01222' => 'egut', 'Migut.A01224' => 'egut', 'Migut.A01225' => 'egut', 'Migut.A01227' => 'egut', 'Migut.A01230' => 'egut', 'Migut.A01231' => 'egut', 'Migut.A01236' => 'egut', 'Migut.A01238' => 'egut', 'Migut.A01243' => 'egut', 'Migut.A01244' => 'egut', 'Migut.C00300' => 'egut', 'Migut.C00304' => 'egut', 'Migut.C00307' => 'egut', 'Migut.C00309' => 'egut', 'Migut.C00310' => 'egut', 'Migut.G00886' => 'egut', 'Migut.G00887' => 'egut', 'Migut.G00892' => 'egut', 'Migut.G00895' => 'egut', 'Migut.O00540' => 'egut', 'Migut.O00593' => 'egut', 'Migut.O00639' => 'egut', 'Migut.O00649' => 'egut', 'Migut.O00650' => 'egut', 'Migut.O00654' => 'egut', 'Nn038s41644' => 'nnu', 'Nn038s41666' => 'nnu', 'Nn040s41714' => 'nnu', 'Nn040s41736' => 'nnu', 'Nn040s41759' => 'nnu', 'Nn040s41782' => 'nnu', 'Nn046s41834' => 'nnu', 'Nn046s41857' => 'nnu', 'Nn046s41903' => 'nnu', 'Nn058s41950' => 'nnu', 'Nn058s41972' => 'nnu', 'Nn058s41995' => 'nnu', 'Nn059s42013' => 'nnu', 'Nn059s42036' => 'nnu', 'Nn059s42059' => 'nnu', 'Nn061s42083' => 'nnu', 'Nn061s42106' => 'nnu', 'Nn061s42129' => 'nnu', 'Nn062s42139' => 'nnu', 'Nn062s42162' => 'nnu', 'Nn062s42184' => 'nnu', 'Nn062s42205' => 'nnu', 'Nn067s42243' => 'nnu', 'Nn067s42265' => 'nnu', 'Nn067s42288' => 'nnu', 'Nn069s42306' => 'nnu', 'Nn069s42330' => 'nnu', 'Nn069s42353' => 'nnu', 'Nn072s42412' => 'nnu', 'Nn072s42434' => 'nnu', 'Nn072s42456' => 'nnu', 'Nn076s42483' => 'nnu', 'Nn076s42506' => 'nnu', 'Nn076s42528' => 'nnu', 'Nn077s42548' => 'nnu', 'Nn077s42571' => 'nnu', 'Nn078s42625' => 'nnu', 'Nn078s42647' => 'nnu', 'Nn078s42670' => 'nnu', 'Nn085s42691' => 'nnu', 'Nn085s42715' => 'nnu', 'Nn085s42723' => 'nnu', 'Nn085s42744' => 'nnu', 'Nn087s42767' => 'nnu', 'Nn087s42789' => 'nnu', 'Nn087s42811' => 'nnu', 'Nn090s42829' => 'nnu', 'Nn090s42852' => 'nnu', 'Nn094s42903' => 'nnu', 'Nn094s42905' => 'nnu', 'Nn094s42928' => 'nnu', 'Nn095s42960' => 'nnu', 'Nn095s42982' => 'nnu', 'Nn095s43004' => 'nnu', 'Nn097s43021' => 'nnu', 'Nn097s43045' => 'nnu', 'Nn097s43067' => 'nnu', 'Nn098s43077' => 'nnu', 'Nn098s43100' => 'nnu', 'Nn104s43142' => 'nnu', 'Nn104s43144' => 'nnu', 'Nn104s43167' => 'nnu', 'Nn105s43198' => 'nnu', 'Nn105s43220' => 'nnu', 'Nn108s43265' => 'nnu', 'Nn108s43287' => 'nnu', 'Nn110s43325' => 'nnu', 'Nn110s43348' => 'nnu', 'Nn116s43391' => 'nnu', 'Nn116s43412' => 'nnu', 'Nn119s43435' => 'nnu', 'Nn119s43458' => 'nnu', 'Nn122s43480' => 'nnu', 'Nn122s43503' => 'nnu', 'Nn122s43526' => 'nnu', 'Nn124s43533' => 'nnu', 'Nn124s43556' => 'nnu', 'Nn124s43578' => 'nnu', 'Nn125s43581' => 'nnu', 'Nn125s43605' => 'nnu', 'Nn125s43627' => 'nnu', 'Nn126s43636' => 'nnu', 'Nn126s43659' => 'nnu', 'Nn126s43681' => 'nnu', 'Nn129s43711' => 'nnu', 'Nn129s43734' => 'nnu', 'Nn130s43760' => 'nnu', 'Nn130s43782' => 'nnu', 'Nn136s43815' => 'nnu', 'Nn136s43838' => 'nnu', 'Nn137s43873' => 'nnu', 'Nn137s43896' => 'nnu', 'Nn139s43918' => 'nnu', 'Nn139s43940' => 'nnu', 'Nn141s43972' => 'nnu', 'Nn142s44009' => 'nnu', 'Nn142s44031' => 'nnu', 'Nn143s44062' => 'nnu', 'Nn143s44084' => 'nnu', 'Nn148s44117' => 'nnu', 'Nn148s44139' => 'nnu', 'Nn151s44157' => 'nnu', 'Nn151s44179' => 'nnu', 'Nn152s44203' => 'nnu', 'Nn152s44225' => 'nnu', 'Nn153s44234' => 'nnu', 'Nn153s44257' => 'nnu', 'Nn157s44314' => 'nnu', 'Nn157s44336' => 'nnu', 'Nn159s44360' => 'nnu', 'Nn159s44383' => 'nnu', 'Nn165s44407' => 'nnu', 'Nn165s44429' => 'nnu', 'Nn167s44457' => 'nnu', 'Nn167s44479' => 'nnu', 'Nn175s44513' => 'nnu', 'Nn175s44527' => 'nnu', 'Nn177s44543' => 'nnu', 'Nn177s44566' => 'nnu', 'Nn178s44589' => 'nnu', 'Nn178s44612' => 'nnu', 'Nn185s44631' => 'nnu', 'Nn185s44654' => 'nnu', 'Nn188s44678' => 'nnu', 'Nn188s44700' => 'nnu', 'Nn189s44714' => 'nnu', 'Nn189s44737' => 'nnu', 'Nn190s44751' => 'nnu', 'Nn190s44774' => 'nnu', 'Nn194s44792' => 'nnu', 'Nn194s44816' => 'nnu', 'Nn195s44835' => 'nnu', 'Nn196s44851' => 'nnu', 'Nn196s44873' => 'nnu', 'Nn1g00031' => 'nnu', 'Nn200s44898' => 'nnu', 'Nn201s44929' => 'nnu', 'Nn201s44953' => 'nnu', 'Nn202s44970' => 'nnu', 'Nn202s44992' => 'nnu', 'Nn203s45003' => 'nnu', 'Nn203s45026' => 'nnu', 'Nn204s45052' => 'nnu', 'Nn207s45074' => 'nnu', 'Nn207s45096' => 'nnu', 'Nn208s45127' => 'nnu', 'Nn209s45139' => 'nnu', 'Nn209s45161' => 'nnu', 'Nn210s45171' => 'nnu', 'Nn210s45193' => 'nnu', 'Nn213s45230' => 'nnu', 'Nn217s45254' => 'nnu', 'Nn217s45279' => 'nnu', 'Nn220s45310' => 'nnu', 'Nn221s45332' => 'nnu', 'Nn222s45352' => 'nnu', 'Nn222s45376' => 'nnu', 'Nn223s45384' => 'nnu', 'Nn223s45406' => 'nnu', 'Nn224s45434' => 'nnu', 'Nn227s45465' => 'nnu', 'Nn229s45495' => 'nnu', 'Nn230s45539' => 'nnu', 'Nn236s45578' => 'nnu', 'Nn237s45609' => 'nnu', 'Nn238s45634' => 'nnu', 'Nn240s45670' => 'nnu', 'Nn242s45698' => 'nnu', 'Nn244s45739' => 'nnu', 'Nn245s45753' => 'nnu', 'Nn245s45775' => 'nnu', 'Nn246s45793' => 'nnu', 'Nn247s45802' => 'nnu', 'Nn247s45826' => 'nnu', 'Nn250s45848' => 'nnu', 'Nn251s45860' => 'nnu', 'Nn252s45895' => 'nnu', 'Nn260s45912' => 'nnu', 'Nn260s45935' => 'nnu', 'Nn267s45973' => 'nnu', 'Nn268s45997' => 'nnu', 'Nn272s46029' => 'nnu', 'Nn273s46041' => 'nnu', 'Nn275s46074' => 'nnu', 'Nn282s46083' => 'nnu', 'Nn284s46112' => 'nnu', 'Nn288s46165' => 'nnu', 'Nn289s46171' => 'nnu', 'Nn294s46210' => 'nnu', 'Nn299s46214' => 'nnu', 'Nn2g16035' => 'nnu', 'Nn306s46251' => 'nnu', 'Nn307s46263' => 'nnu', 'Nn310s46288' => 'nnu', 'Nn315s46312' => 'nnu', 'Nn318s46318' => 'nnu', 'Nn327s46359' => 'nnu', 'Nn329s46370' => 'nnu', 'Nn338s46400' => 'nnu', 'Nn341s46424' => 'nnu', 'Nn344s46452' => 'nnu', 'Nn352s46487' => 'nnu', 'Nn356s46503' => 'nnu', 'Nn365s46515' => 'nnu', 'Nn376s46547' => 'nnu', 'Nn3g16070' => 'nnu', 'Nn3g16104' => 'nnu', 'Nn3g20492' => 'nnu', 'Nn3g20517' => 'nnu', 'Nn3g20539' => 'nnu', 'Nn3g20842' => 'nnu', 'Nn408s46577' => 'nnu', 'Nn422s46603' => 'nnu', 'Nn437s46674' => 'nnu', 'Nn444s46696' => 'nnu', 'Nn4g25097' => 'nnu', 'Nn4g25906' => 'nnu', 'Nn5g26986' => 'nnu', 'Nn5g27006' => 'nnu', 'Nn5g27010' => 'nnu', 'Nn5g27030' => 'nnu', 'Nn5g27319' => 'nnu', 'Nn5g31172' => 'nnu', 'Nn5g31215' => 'nnu', 'Nn5g31245' => 'nnu', 'Nn5g31268' => 'nnu', 'Nn5g31286' => 'nnu', 'Nn5g31305' => 'nnu', 'Nn5g31324' => 'nnu', 'Nn5g31351' => 'nnu', 'Nn5g31380' => 'nnu', 'Nn5g31402' => 'nnu', 'Nn5g31422' => 'nnu', 'Nn5g31445' => 'nnu', 'Nn5g31458' => 'nnu', 'Nn5g31478' => 'nnu', 'Nn6g32484' => 'nnu', 'Nn6g32486' => 'nnu', 'Nn6g32509' => 'nnu', 'Nn6g32529' => 'nnu', 'Nn6g32551' => 'nnu', 'Nn6g32573' => 'nnu', 'Nn6g32595' => 'nnu', 'Nn6g32596' => 'nnu', 'Nn6g32624' => 'nnu', 'Nn6g32651' => 'nnu', 'Nn6g32672' => 'nnu', 'Nn6g32695' => 'nnu', 'Nn6g32720' => 'nnu', 'Nn6g32730' => 'nnu', 'Nn6g32754' => 'nnu', 'Nn6g32764' => 'nnu', 'Nn6g32780' => 'nnu', 'Nn6g32781' => 'nnu', 'Nn6g32802' => 'nnu', 'Nn6g32814' => 'nnu', 'Nn6g32848' => 'nnu', 'Nn6g32862' => 'nnu', 'Nn6g32883' => 'nnu', 'Nn6g32910' => 'nnu', 'Nn6g32933' => 'nnu', 'Nn6g32956' => 'nnu', 'Nn6g32975' => 'nnu', 'Nn6g32993' => 'nnu', 'Nn6g33031' => 'nnu', 'Nn6g33053' => 'nnu', 'Nn6g33061' => 'nnu', 'Nn6g33081' => 'nnu', 'Nn6g33101' => 'nnu', 'Nn6g33110' => 'nnu', 'Nn6g33129' => 'nnu', 'Nn6g33145' => 'nnu', 'Nn6g33164' => 'nnu', 'Nn6g33178' => 'nnu', 'Nn6g33216' => 'nnu', 'Nn6g33235' => 'nnu', 'Nn6g33239' => 'nnu', 'Nn8g40311' => 'nnu', 'Nn8g40335' => 'nnu', 'Nn8g41314' => 'nnu', 'Nn8g41338' => 'nnu', 'Oeu008745.1' => 'oeu', 'PGSC0003DMG400019038' => 'stu', 'PGSC0003DMG400035518' => 'stu', 'PGSC0003DMG400043383' => 'stu', 'Phvul.002G055275' => 'pvu', 'Phvul.002G055425' => 'pvu', 'Phvul.003G000434' => 'pvu', 'Phvul.003G090301' => 'pvu', 'Phvul.L002175' => 'pvu', 'Potri.008G223900' => 'ptr', 'Potri.008G224102' => 'ptr', 'Potri.008G224138' => 'ptr', 'Potri.008G224165' => 'ptr', 'Potri.008G224201' => 'ptr', 'Potri.008G224264' => 'ptr', 'Potri.008G224282' => 'ptr', 'Potri.008G224301' => 'ptr', 'Potri.008G224319' => 'ptr', 'Potri.008G224346' => 'ptr', 'Potri.008G224364' => 'ptr', 'Potri.008G224400' => 'ptr', 'Potri.008G224601' => 'ptr', 'Potri.008G225001' => 'ptr', 'Potri.008G225201' => 'ptr', 'Potri.008G225401' => 'ptr', 'Potri.014G185372' => 'ptr', 'Potri.014G185444' => 'ptr', 'Potri.014G185660' => 'ptr', 'Potri.014G185876' => 'ptr', 'Potri.014G186020' => 'ptr', 'Potri.014G186164' => 'ptr', 'Potri.014G186380' => 'ptr', 'Potri.014G186524' => 'ptr', 'Potri.014G186600' => 'ptr', 'Potri.T124505' => 'ptr', 'Sopen00g004120' => 'spe', 'Sopen00g006740' => 'spe', 'Sopen06g001500' => 'spe', 'Thhalv10028274m.g' => 'esa', 'Thhalv10028342m.g' => 'esa', 'unitig_124.g30880' => 'ugi', 'unitig_127.g34227' => 'ugi', 'unitig_135.g35479' => 'ugi', 'unitig_139.g29582' => 'ugi', 'unitig_143.g32398' => 'ugi', 'unitig_145.g32340' => 'ugi', 'unitig_145.g32367' => 'ugi', 'unitig_175.g35439' => 'ugi', 'unitig_579.g34805' => 'ugi', 'unitig_581.g33717' => 'ugi', 'unitig_583.g34786' => 'ugi', 'unitig_659.g33186' => 'ugi', 'unitig_669.g33613' => 'ugi', 'unitig_681.g32559' => 'ugi', 'unitig_685.g33134' => 'ugi', 'unitig_721.g34551' => 'ugi', 'unitig_805.g34440' => 'ugi', 'unitig_809.g34388' => 'ugi', 'unitig_830.g33044' => 'ugi', 'unitig_881.g33004' => 'ugi', 'unitig_882.g34274' => 'ugi', 'unitig_96.g33476' => 'ugi', 'Zm00001eb439550' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001319' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001319' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001319' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001319' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151