Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001275', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '492', 'num_species' => '5' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'CBR_g48875' => 'cbr', 'Nn3g20827' => 'nnu', 'PGSC0003DMG400044391' => 'stu', 'Solyc00g006650.1' => 'sly', 'Solyc00g007920.1' => 'sly', 'Solyc00g007930.1' => 'sly', 'Solyc00g007940.1' => 'sly', 'Solyc00g016590.1' => 'sly', 'Solyc00g500005.1' => 'sly', 'Solyc00g500007.1' => 'sly', 'Solyc00g500008.1' => 'sly', 'Solyc00g500009.1' => 'sly', 'Solyc00g500010.1' => 'sly', 'Solyc00g500012.1' => 'sly', 'Solyc00g500015.1' => 'sly', 'Solyc00g500016.1' => 'sly', 'Solyc00g500017.1' => 'sly', 'Solyc00g500089.1' => 'sly', 'Solyc00g500161.1' => 'sly', 'Solyc00g500162.1' => 'sly', 'Solyc00g500163.1' => 'sly', 'Solyc00g500164.1' => 'sly', 'Solyc00g500165.1' => 'sly', 'Solyc00g500174.1' => 'sly', 'Solyc00g500175.1' => 'sly', 'Solyc00g500176.1' => 'sly', 'Solyc00g500178.1' => 'sly', 'Solyc00g500233.1' => 'sly', 'Solyc00g500265.1' => 'sly', 'Solyc00g500266.1' => 'sly', 'Solyc00g500267.1' => 'sly', 'Solyc00g500288.1' => 'sly', 'Solyc00g500306.1' => 'sly', 'Solyc00g500307.1' => 'sly', 'Solyc00g500368.1' => 'sly', 'Solyc00g500369.1' => 'sly', 'Solyc00g500370.1' => 'sly', 'Solyc00g500371.1' => 'sly', 'Solyc00g500372.1' => 'sly', 'Solyc00g500375.1' => 'sly', 'Solyc00g500382.1' => 'sly', 'Solyc00g500383.1' => 'sly', 'Solyc00g500388.1' => 'sly', 'Solyc00g500389.1' => 'sly', 'Solyc00g500390.1' => 'sly', 'Solyc00g500391.1' => 'sly', 'Solyc00g500392.1' => 'sly', 'Solyc00g500393.1' => 'sly', 'Solyc00g500394.1' => 'sly', 'Solyc00g500396.1' => 'sly', 'Solyc00g500397.1' => 'sly', 'Solyc00g500399.1' => 'sly', 'Solyc00g500400.1' => 'sly', 'Solyc00g500401.1' => 'sly', 'Solyc00g500402.1' => 'sly', 'Solyc00g500403.1' => 'sly', 'Solyc00g500404.1' => 'sly', 'Solyc01g028980.1' => 'sly', 'Solyc01g038230.1' => 'sly', 'Solyc01g038232.1' => 'sly', 'Solyc01g038238.1' => 'sly', 'Solyc02g005560.1' => 'sly', 'Solyc02g005570.1' => 'sly', 'Solyc02g005580.1' => 'sly', 'Solyc02g049100.1' => 'sly', 'Solyc03g046593.1' => 'sly', 'Solyc03g046595.1' => 'sly', 'Solyc03g150119.1' => 'sly', 'Solyc03g150120.1' => 'sly', 'Solyc04g039775.1' => 'sly', 'Solyc06g010130.1' => 'sly', 'Solyc06g010140.1' => 'sly', 'Solyc06g011661.1' => 'sly', 'Solyc06g011664.1' => 'sly', 'Solyc06g011669.1' => 'sly', 'Solyc06g016673.1' => 'sly', 'Solyc06g016677.1' => 'sly', 'Solyc06g016720.3' => 'sly', 'Solyc06g016730.1' => 'sly', 'Solyc07g020795.1' => 'sly', 'Solyc08g016791.1' => 'sly', 'Solyc08g016792.1' => 'sly', 'Solyc08g016794.1' => 'sly', 'Solyc08g016796.1' => 'sly', 'Solyc08g016806.1' => 'sly', 'Solyc08g016807.1' => 'sly', 'Solyc08g150109.1' => 'sly', 'Solyc08g150110.1' => 'sly', 'Solyc08g150111.1' => 'sly', 'Solyc08g150120.1' => 'sly', 'Solyc11g051171.1' => 'sly', 'Solyc11g051172.1' => 'sly', 'Solyc11g051174.1' => 'sly', 'Solyc11g051176.1' => 'sly', 'Solyc12g026360.1' => 'sly', 'Solyc12g082767.1' => 'sly', 'Solyc12g082770.3' => 'sly', 'Solyc12g082790.1' => 'sly', 'Solyc12g082791.1' => 'sly', 'Solyc12g082792.1' => 'sly', 'Solyc12g082794.1' => 'sly', 'Solyc12g082795.1' => 'sly', 'Solyc12g082796.1' => 'sly', 'Sopen00g001130' => 'spe', 'Sopen00g001170' => 'spe', 'Sopen00g001190' => 'spe', 'Sopen00g001200' => 'spe', 'Sopen00g001210' => 'spe', 'Sopen00g001230' => 'spe', 'Sopen00g001240' => 'spe', 'Sopen00g001250' => 'spe', 'Sopen00g001260' => 'spe', 'Sopen00g001280' => 'spe', 'Sopen00g001290' => 'spe', 'Sopen00g001300' => 'spe', 'Sopen00g001310' => 'spe', 'Sopen00g001320' => 'spe', 'Sopen00g001330' => 'spe', 'Sopen00g001340' => 'spe', 'Sopen00g001350' => 'spe', 'Sopen00g001380' => 'spe', 'Sopen00g001390' => 'spe', 'Sopen00g001400' => 'spe', 'Sopen00g001420' => 'spe', 'Sopen00g001470' => 'spe', 'Sopen00g001520' => 'spe', 'Sopen00g001560' => 'spe', 'Sopen00g001580' => 'spe', 'Sopen00g001600' => 'spe', 'Sopen00g001620' => 'spe', 'Sopen00g001640' => 'spe', 'Sopen00g001650' => 'spe', 'Sopen00g001700' => 'spe', 'Sopen00g001780' => 'spe', 'Sopen00g001790' => 'spe', 'Sopen00g001940' => 'spe', 'Sopen00g002010' => 'spe', 'Sopen00g002030' => 'spe', 'Sopen00g002040' => 'spe', 'Sopen00g002070' => 'spe', 'Sopen00g002090' => 'spe', 'Sopen00g002110' => 'spe', 'Sopen00g002130' => 'spe', 'Sopen00g002140' => 'spe', 'Sopen00g002170' => 'spe', 'Sopen00g002180' => 'spe', 'Sopen00g002190' => 'spe', 'Sopen00g002200' => 'spe', 'Sopen00g002350' => 'spe', 'Sopen00g002450' => 'spe', 'Sopen00g002470' => 'spe', 'Sopen00g002480' => 'spe', 'Sopen00g002500' => 'spe', 'Sopen00g002580' => 'spe', 'Sopen00g002600' => 'spe', 'Sopen00g002780' => 'spe', 'Sopen00g002790' => 'spe', 'Sopen00g002830' => 'spe', 'Sopen00g002850' => 'spe', 'Sopen00g002870' => 'spe', 'Sopen00g002920' => 'spe', 'Sopen00g002960' => 'spe', 'Sopen00g003070' => 'spe', 'Sopen00g003080' => 'spe', 'Sopen00g003490' => 'spe', 'Sopen00g003500' => 'spe', 'Sopen00g003510' => 'spe', 'Sopen00g003570' => 'spe', 'Sopen00g003640' => 'spe', 'Sopen00g003650' => 'spe', 'Sopen00g003790' => 'spe', 'Sopen00g003800' => 'spe', 'Sopen00g003820' => 'spe', 'Sopen00g003840' => 'spe', 'Sopen00g003860' => 'spe', 'Sopen00g003880' => 'spe', 'Sopen00g003890' => 'spe', 'Sopen00g003910' => 'spe', 'Sopen00g003970' => 'spe', 'Sopen00g004000' => 'spe', 'Sopen00g004040' => 'spe', 'Sopen00g004160' => 'spe', 'Sopen00g004250' => 'spe', 'Sopen00g004340' => 'spe', 'Sopen00g004380' => 'spe', 'Sopen00g004390' => 'spe', 'Sopen00g004400' => 'spe', 'Sopen00g004410' => 'spe', 'Sopen00g004420' => 'spe', 'Sopen00g004460' => 'spe', 'Sopen00g004470' => 'spe', 'Sopen00g004480' => 'spe', 'Sopen00g004500' => 'spe', 'Sopen00g004510' => 'spe', 'Sopen00g004520' => 'spe', 'Sopen00g004550' => 'spe', 'Sopen00g004710' => 'spe', 'Sopen00g004720' => 'spe', 'Sopen00g004780' => 'spe', 'Sopen00g004850' => 'spe', 'Sopen00g004860' => 'spe', 'Sopen00g004940' => 'spe', 'Sopen00g005170' => 'spe', 'Sopen00g005200' => 'spe', 'Sopen00g005210' => 'spe', 'Sopen00g005280' => 'spe', 'Sopen00g005300' => 'spe', 'Sopen00g005340' => 'spe', 'Sopen00g005400' => 'spe', 'Sopen00g005440' => 'spe', 'Sopen00g005480' => 'spe', 'Sopen00g005510' => 'spe', 'Sopen00g005520' => 'spe', 'Sopen00g005550' => 'spe', 'Sopen00g005570' => 'spe', 'Sopen00g005580' => 'spe', 'Sopen00g005680' => 'spe', 'Sopen00g005710' => 'spe', 'Sopen00g005770' => 'spe', 'Sopen00g005780' => 'spe', 'Sopen00g005900' => 'spe', 'Sopen00g005960' => 'spe', 'Sopen00g005980' => 'spe', 'Sopen00g006010' => 'spe', 'Sopen00g006040' => 'spe', 'Sopen00g006060' => 'spe', 'Sopen00g006080' => 'spe', 'Sopen00g006090' => 'spe', 'Sopen00g006120' => 'spe', 'Sopen00g006160' => 'spe', 'Sopen00g006180' => 'spe', 'Sopen00g006220' => 'spe', 'Sopen00g006240' => 'spe', 'Sopen00g006250' => 'spe', 'Sopen00g006260' => 'spe', 'Sopen00g006290' => 'spe', 'Sopen00g006300' => 'spe', 'Sopen00g006330' => 'spe', 'Sopen00g006370' => 'spe', 'Sopen00g006380' => 'spe', 'Sopen00g006400' => 'spe', 'Sopen00g006410' => 'spe', 'Sopen00g006530' => 'spe', 'Sopen00g006550' => 'spe', 'Sopen00g006570' => 'spe', 'Sopen00g006670' => 'spe', 'Sopen00g006680' => 'spe', 'Sopen00g006700' => 'spe', 'Sopen00g006720' => 'spe', 'Sopen00g006850' => 'spe', 'Sopen00g006860' => 'spe', 'Sopen00g006890' => 'spe', 'Sopen00g006930' 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=> 'spe', 'Sopen00g012090' => 'spe', 'Sopen00g012110' => 'spe', 'Sopen00g012130' => 'spe', 'Sopen00g012140' => 'spe', 'Sopen00g012150' => 'spe', 'Sopen00g012170' => 'spe', 'Sopen00g012180' => 'spe', 'Sopen00g012200' => 'spe', 'Sopen00g012210' => 'spe', 'Sopen00g012240' => 'spe', 'Sopen00g012270' => 'spe', 'Sopen00g012280' => 'spe', 'Sopen00g012290' => 'spe', 'Sopen00g012300' => 'spe', 'Sopen00g012320' => 'spe', 'Sopen00g012360' => 'spe', 'Sopen00g012380' => 'spe', 'Sopen00g012430' => 'spe', 'Sopen00g012440' => 'spe', 'Sopen00g012450' => 'spe', 'Sopen00g012460' => 'spe', 'Sopen00g012470' => 'spe', 'Sopen00g012480' => 'spe', 'Sopen00g012530' => 'spe', 'Sopen00g012640' => 'spe', 'Sopen00g012800' => 'spe', 'Sopen00g012900' => 'spe', 'Sopen00g012920' => 'spe', 'Sopen00g013220' => 'spe', 'Sopen00g013240' => 'spe', 'Sopen00g013250' => 'spe', 'Sopen00g013260' => 'spe', 'Sopen00g013310' => 'spe', 'Sopen00g013560' => 'spe', 'Sopen00g013640' => 'spe', 'Sopen00g013670' => 'spe', 'Sopen00g013710' => 'spe', 'Sopen00g013740' => 'spe', 'Sopen00g014040' => 'spe', 'Sopen00g014140' => 'spe', 'Sopen00g014250' => 'spe', 'Sopen00g014300' => 'spe', 'Sopen00g014310' => 'spe', 'Sopen00g014320' => 'spe', 'Sopen00g014330' => 'spe', 'Sopen00g014340' => 'spe', 'Sopen00g014370' => 'spe', 'Sopen00g014380' => 'spe', 'Sopen01g017930' => 'spe', 'Sopen01g017940' => 'spe', 'Sopen02g002410' => 'spe', 'Sopen02g002440' => 'spe', 'Sopen02g002460' => 'spe', 'Sopen02g002470' => 'spe', 'Sopen02g002490' => 'spe', 'Sopen02g002660' => 'spe', 'Sopen02g002670' => 'spe', 'Sopen02g002690' => 'spe', 'Sopen02g005030' => 'spe', 'Sopen02g005060' => 'spe', 'Sopen02g005580' => 'spe', 'Sopen02g005600' => 'spe', 'Sopen02g005620' => 'spe', 'Sopen02g005640' => 'spe', 'Sopen02g005650' => 'spe', 'Sopen02g006940' => 'spe', 'Sopen02g006960' => 'spe', 'Sopen02g006990' => 'spe', 'Sopen02g007010' => 'spe', 'Sopen02g007080' => 'spe', 'Sopen02g007220' => 'spe', 'Sopen02g008120' => 'spe', 'Sopen02g008130' => 'spe', 'Sopen02g008170' => 'spe', 'Sopen02g008180' => 'spe', 'Sopen02g008210' => 'spe', 'Sopen02g008320' => 'spe', 'Sopen03g019040' => 'spe', 'Sopen03g019050' => 'spe', 'Sopen03g019060' => 'spe', 'Sopen03g019070' => 'spe', 'Sopen04g010220' => 'spe', 'Sopen04g010230' => 'spe', 'Sopen04g010240' => 'spe', 'Sopen04g010270' => 'spe', 'Sopen04g010280' => 'spe', 'Sopen04g010300' => 'spe', 'Sopen04g016160' => 'spe', 'Sopen04g024070' => 'spe', 'Sopen05g022490' => 'spe', 'Sopen06g004910' => 'spe', 'Sopen06g004940' => 'spe', 'Sopen06g004950' => 'spe', 'Sopen06g007060' => 'spe', 'Sopen06g007070' => 'spe', 'Sopen06g007080' => 'spe', 'Sopen06g007090' => 'spe', 'Sopen06g007130' => 'spe', 'Sopen06g007180' => 'spe', 'Sopen06g007530' => 'spe', 'Sopen06g009240' => 'spe', 'Sopen06g009260' => 'spe', 'Sopen06g009280' => 'spe', 'Sopen06g016680' => 'spe', 'Sopen06g016700' => 'spe', 'Sopen07g009420' => 'spe', 'Sopen07g009500' => 'spe', 'Sopen08g007410' => 'spe', 'Sopen09g010080' => 'spe', 'Sopen09g010100' => 'spe', 'Sopen12g011570' => 'spe', 'Sopen12g012170' => 'spe', 'Sopen12g012180' => 'spe', 'Sopen12g012190' => 'spe', 'Sopen12g012200' => 'spe', 'Sopen12g012210' => 'spe', 'Sopen12g012230' => 'spe', 'Sopen12g012240' => 'spe', 'Sopen12g012260' => 'spe', 'Sopen12g012270' => 'spe', 'Sopen12g012280' => 'spe', 'Sopen12g012290' => 'spe', 'Sopen12g012300' => 'spe', 'Sopen12g012310' => 'spe', 'Sopen12g012980' => 'spe', 'Sopen12g015550' => 'spe', 'Sopen12g024800' => 'spe', 'Sopen12g025480' => 'spe' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001275', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001275' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001275', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '492', 'num_species' => '5' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001275' ) ), 'genes' => array( 'CBR_g48875' => 'cbr', 'Nn3g20827' => 'nnu', 'PGSC0003DMG400044391' => 'stu', 'Solyc00g006650.1' => 'sly', 'Solyc00g007920.1' => 'sly', 'Solyc00g007930.1' => 'sly', 'Solyc00g007940.1' => 'sly', 'Solyc00g016590.1' => 'sly', 'Solyc00g500005.1' => 'sly', 'Solyc00g500007.1' => 'sly', 'Solyc00g500008.1' => 'sly', 'Solyc00g500009.1' => 'sly', 'Solyc00g500010.1' => 'sly', 'Solyc00g500012.1' => 'sly', 'Solyc00g500015.1' => 'sly', 'Solyc00g500016.1' => 'sly', 'Solyc00g500017.1' => 'sly', 'Solyc00g500089.1' => 'sly', 'Solyc00g500161.1' => 'sly', 'Solyc00g500162.1' => 'sly', 'Solyc00g500163.1' => 'sly', 'Solyc00g500164.1' => 'sly', 'Solyc00g500165.1' => 'sly', 'Solyc00g500174.1' => 'sly', 'Solyc00g500175.1' => 'sly', 'Solyc00g500176.1' => 'sly', 'Solyc00g500178.1' => 'sly', 'Solyc00g500233.1' => 'sly', 'Solyc00g500265.1' => 'sly', 'Solyc00g500266.1' => 'sly', 'Solyc00g500267.1' => 'sly', 'Solyc00g500288.1' => 'sly', 'Solyc00g500306.1' => 'sly', 'Solyc00g500307.1' => 'sly', 'Solyc00g500368.1' => 'sly', 'Solyc00g500369.1' => 'sly', 'Solyc00g500370.1' => 'sly', 'Solyc00g500371.1' => 'sly', 'Solyc00g500372.1' => 'sly', 'Solyc00g500375.1' => 'sly', 'Solyc00g500382.1' => 'sly', 'Solyc00g500383.1' => 'sly', 'Solyc00g500388.1' => 'sly', 'Solyc00g500389.1' => 'sly', 'Solyc00g500390.1' => 'sly', 'Solyc00g500391.1' => 'sly', 'Solyc00g500392.1' => 'sly', 'Solyc00g500393.1' => 'sly', 'Solyc00g500394.1' => 'sly', 'Solyc00g500396.1' => 'sly', 'Solyc00g500397.1' => 'sly', 'Solyc00g500399.1' => 'sly', 'Solyc00g500400.1' => 'sly', 'Solyc00g500401.1' => 'sly', 'Solyc00g500402.1' => 'sly', 'Solyc00g500403.1' => 'sly', 'Solyc00g500404.1' => 'sly', 'Solyc01g028980.1' => 'sly', 'Solyc01g038230.1' => 'sly', 'Solyc01g038232.1' => 'sly', 'Solyc01g038238.1' => 'sly', 'Solyc02g005560.1' => 'sly', 'Solyc02g005570.1' => 'sly', 'Solyc02g005580.1' => 'sly', 'Solyc02g049100.1' => 'sly', 'Solyc03g046593.1' => 'sly', 'Solyc03g046595.1' => 'sly', 'Solyc03g150119.1' => 'sly', 'Solyc03g150120.1' => 'sly', 'Solyc04g039775.1' => 'sly', 'Solyc06g010130.1' => 'sly', 'Solyc06g010140.1' => 'sly', 'Solyc06g011661.1' => 'sly', 'Solyc06g011664.1' => 'sly', 'Solyc06g011669.1' => 'sly', 'Solyc06g016673.1' => 'sly', 'Solyc06g016677.1' => 'sly', 'Solyc06g016720.3' => 'sly', 'Solyc06g016730.1' => 'sly', 'Solyc07g020795.1' => 'sly', 'Solyc08g016791.1' => 'sly', 'Solyc08g016792.1' => 'sly', 'Solyc08g016794.1' => 'sly', 'Solyc08g016796.1' => 'sly', 'Solyc08g016806.1' => 'sly', 'Solyc08g016807.1' => 'sly', 'Solyc08g150109.1' => 'sly', 'Solyc08g150110.1' => 'sly', 'Solyc08g150111.1' => 'sly', 'Solyc08g150120.1' => 'sly', 'Solyc11g051171.1' => 'sly', 'Solyc11g051172.1' => 'sly', 'Solyc11g051174.1' => 'sly', 'Solyc11g051176.1' => 'sly', 'Solyc12g026360.1' => 'sly', 'Solyc12g082767.1' => 'sly', 'Solyc12g082770.3' => 'sly', 'Solyc12g082790.1' => 'sly', 'Solyc12g082791.1' => 'sly', 'Solyc12g082792.1' => 'sly', 'Solyc12g082794.1' => 'sly', 'Solyc12g082795.1' => 'sly', 'Solyc12g082796.1' => 'sly', 'Sopen00g001130' => 'spe', 'Sopen00g001170' => 'spe', 'Sopen00g001190' => 'spe', 'Sopen00g001200' => 'spe', 'Sopen00g001210' => 'spe', 'Sopen00g001230' => 'spe', 'Sopen00g001240' => 'spe', 'Sopen00g001250' => 'spe', 'Sopen00g001260' => 'spe', 'Sopen00g001280' => 'spe', 'Sopen00g001290' => 'spe', 'Sopen00g001300' => 'spe', 'Sopen00g001310' => 'spe', 'Sopen00g001320' => 'spe', 'Sopen00g001330' => 'spe', 'Sopen00g001340' => 'spe', 'Sopen00g001350' => 'spe', 'Sopen00g001380' => 'spe', 'Sopen00g001390' => 'spe', 'Sopen00g001400' => 'spe', 'Sopen00g001420' => 'spe', 'Sopen00g001470' => 'spe', 'Sopen00g001520' => 'spe', 'Sopen00g001560' => 'spe', 'Sopen00g001580' => 'spe', 'Sopen00g001600' => 'spe', 'Sopen00g001620' => 'spe', 'Sopen00g001640' => 'spe', 'Sopen00g001650' => 'spe', 'Sopen00g001700' => 'spe', 'Sopen00g001780' => 'spe', 'Sopen00g001790' => 'spe', 'Sopen00g001940' => 'spe', 'Sopen00g002010' => 'spe', 'Sopen00g002030' => 'spe', 'Sopen00g002040' => 'spe', 'Sopen00g002070' => 'spe', 'Sopen00g002090' => 'spe', 'Sopen00g002110' => 'spe', 'Sopen00g002130' 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=> 'spe', 'Sopen12g012180' => 'spe', 'Sopen12g012190' => 'spe', 'Sopen12g012200' => 'spe', 'Sopen12g012210' => 'spe', 'Sopen12g012230' => 'spe', 'Sopen12g012240' => 'spe', 'Sopen12g012260' => 'spe', 'Sopen12g012270' => 'spe', 'Sopen12g012280' => 'spe', 'Sopen12g012290' => 'spe', 'Sopen12g012300' => 'spe', 'Sopen12g012310' => 'spe', 'Sopen12g012980' => 'spe', 'Sopen12g015550' => 'spe', 'Sopen12g024800' => 'spe', 'Sopen12g025480' => 'spe' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001275' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001275' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001275' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001275' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001275', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '492', 'num_species' => '5' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'CBR_g48875' => 'cbr', 'Nn3g20827' => 'nnu', 'PGSC0003DMG400044391' => 'stu', 'Solyc00g006650.1' => 'sly', 'Solyc00g007920.1' => 'sly', 'Solyc00g007930.1' => 'sly', 'Solyc00g007940.1' => 'sly', 'Solyc00g016590.1' => 'sly', 'Solyc00g500005.1' => 'sly', 'Solyc00g500007.1' => 'sly', 'Solyc00g500008.1' => 'sly', 'Solyc00g500009.1' => 'sly', 'Solyc00g500010.1' => 'sly', 'Solyc00g500012.1' => 'sly', 'Solyc00g500015.1' => 'sly', 'Solyc00g500016.1' => 'sly', 'Solyc00g500017.1' => 'sly', 'Solyc00g500089.1' => 'sly', 'Solyc00g500161.1' => 'sly', 'Solyc00g500162.1' => 'sly', 'Solyc00g500163.1' => 'sly', 'Solyc00g500164.1' => 'sly', 'Solyc00g500165.1' => 'sly', 'Solyc00g500174.1' => 'sly', 'Solyc00g500175.1' => 'sly', 'Solyc00g500176.1' => 'sly', 'Solyc00g500178.1' => 'sly', 'Solyc00g500233.1' => 'sly', 'Solyc00g500265.1' => 'sly', 'Solyc00g500266.1' => 'sly', 'Solyc00g500267.1' => 'sly', 'Solyc00g500288.1' => 'sly', 'Solyc00g500306.1' => 'sly', 'Solyc00g500307.1' => 'sly', 'Solyc00g500368.1' => 'sly', 'Solyc00g500369.1' => 'sly', 'Solyc00g500370.1' => 'sly', 'Solyc00g500371.1' => 'sly', 'Solyc00g500372.1' => 'sly', 'Solyc00g500375.1' => 'sly', 'Solyc00g500382.1' => 'sly', 'Solyc00g500383.1' => 'sly', 'Solyc00g500388.1' => 'sly', 'Solyc00g500389.1' => 'sly', 'Solyc00g500390.1' => 'sly', 'Solyc00g500391.1' => 'sly', 'Solyc00g500392.1' => 'sly', 'Solyc00g500393.1' => 'sly', 'Solyc00g500394.1' => 'sly', 'Solyc00g500396.1' => 'sly', 'Solyc00g500397.1' => 'sly', 'Solyc00g500399.1' => 'sly', 'Solyc00g500400.1' => 'sly', 'Solyc00g500401.1' => 'sly', 'Solyc00g500402.1' => 'sly', 'Solyc00g500403.1' => 'sly', 'Solyc00g500404.1' => 'sly', 'Solyc01g028980.1' => 'sly', 'Solyc01g038230.1' => 'sly', 'Solyc01g038232.1' => 'sly', 'Solyc01g038238.1' => 'sly', 'Solyc02g005560.1' => 'sly', 'Solyc02g005570.1' => 'sly', 'Solyc02g005580.1' => 'sly', 'Solyc02g049100.1' => 'sly', 'Solyc03g046593.1' => 'sly', 'Solyc03g046595.1' => 'sly', 'Solyc03g150119.1' => 'sly', 'Solyc03g150120.1' => 'sly', 'Solyc04g039775.1' => 'sly', 'Solyc06g010130.1' => 'sly', 'Solyc06g010140.1' => 'sly', 'Solyc06g011661.1' => 'sly', 'Solyc06g011664.1' => 'sly', 'Solyc06g011669.1' => 'sly', 'Solyc06g016673.1' => 'sly', 'Solyc06g016677.1' => 'sly', 'Solyc06g016720.3' => 'sly', 'Solyc06g016730.1' => 'sly', 'Solyc07g020795.1' => 'sly', 'Solyc08g016791.1' => 'sly', 'Solyc08g016792.1' => 'sly', 'Solyc08g016794.1' => 'sly', 'Solyc08g016796.1' => 'sly', 'Solyc08g016806.1' => 'sly', 'Solyc08g016807.1' => 'sly', 'Solyc08g150109.1' => 'sly', 'Solyc08g150110.1' => 'sly', 'Solyc08g150111.1' => 'sly', 'Solyc08g150120.1' => 'sly', 'Solyc11g051171.1' => 'sly', 'Solyc11g051172.1' => 'sly', 'Solyc11g051174.1' => 'sly', 'Solyc11g051176.1' => 'sly', 'Solyc12g026360.1' => 'sly', 'Solyc12g082767.1' => 'sly', 'Solyc12g082770.3' => 'sly', 'Solyc12g082790.1' => 'sly', 'Solyc12g082791.1' => 'sly', 'Solyc12g082792.1' => 'sly', 'Solyc12g082794.1' => 'sly', 'Solyc12g082795.1' => 'sly', 'Solyc12g082796.1' => 'sly', 'Sopen00g001130' => 'spe', 'Sopen00g001170' => 'spe', 'Sopen00g001190' => 'spe', 'Sopen00g001200' => 'spe', 'Sopen00g001210' => 'spe', 'Sopen00g001230' => 'spe', 'Sopen00g001240' => 'spe', 'Sopen00g001250' => 'spe', 'Sopen00g001260' => 'spe', 'Sopen00g001280' => 'spe', 'Sopen00g001290' => 'spe', 'Sopen00g001300' => 'spe', 'Sopen00g001310' => 'spe', 'Sopen00g001320' => 'spe', 'Sopen00g001330' => 'spe', 'Sopen00g001340' => 'spe', 'Sopen00g001350' => 'spe', 'Sopen00g001380' => 'spe', 'Sopen00g001390' => 'spe', 'Sopen00g001400' => 'spe', 'Sopen00g001420' => 'spe', 'Sopen00g001470' => 'spe', 'Sopen00g001520' => 'spe', 'Sopen00g001560' => 'spe', 'Sopen00g001580' => 'spe', 'Sopen00g001600' => 'spe', 'Sopen00g001620' => 'spe', 'Sopen00g001640' => 'spe', 'Sopen00g001650' => 'spe', 'Sopen00g001700' => 'spe', 'Sopen00g001780' => 'spe', 'Sopen00g001790' => 'spe', 'Sopen00g001940' => 'spe', 'Sopen00g002010' => 'spe', 'Sopen00g002030' => 'spe', 'Sopen00g002040' => 'spe', 'Sopen00g002070' => 'spe', 'Sopen00g002090' => 'spe', 'Sopen00g002110' => 'spe', 'Sopen00g002130' => 'spe', 'Sopen00g002140' => 'spe', 'Sopen00g002170' => 'spe', 'Sopen00g002180' => 'spe', 'Sopen00g002190' => 'spe', 'Sopen00g002200' => 'spe', 'Sopen00g002350' => 'spe', 'Sopen00g002450' => 'spe', 'Sopen00g002470' => 'spe', 'Sopen00g002480' => 'spe', 'Sopen00g002500' => 'spe', 'Sopen00g002580' => 'spe', 'Sopen00g002600' => 'spe', 'Sopen00g002780' => 'spe', 'Sopen00g002790' => 'spe', 'Sopen00g002830' => 'spe', 'Sopen00g002850' => 'spe', 'Sopen00g002870' => 'spe', 'Sopen00g002920' => 'spe', 'Sopen00g002960' => 'spe', 'Sopen00g003070' => 'spe', 'Sopen00g003080' => 'spe', 'Sopen00g003490' => 'spe', 'Sopen00g003500' => 'spe', 'Sopen00g003510' => 'spe', 'Sopen00g003570' => 'spe', 'Sopen00g003640' => 'spe', 'Sopen00g003650' => 'spe', 'Sopen00g003790' => 'spe', 'Sopen00g003800' => 'spe', 'Sopen00g003820' => 'spe', 'Sopen00g003840' => 'spe', 'Sopen00g003860' => 'spe', 'Sopen00g003880' => 'spe', 'Sopen00g003890' => 'spe', 'Sopen00g003910' => 'spe', 'Sopen00g003970' => 'spe', 'Sopen00g004000' => 'spe', 'Sopen00g004040' => 'spe', 'Sopen00g004160' => 'spe', 'Sopen00g004250' => 'spe', 'Sopen00g004340' => 'spe', 'Sopen00g004380' => 'spe', 'Sopen00g004390' => 'spe', 'Sopen00g004400' => 'spe', 'Sopen00g004410' => 'spe', 'Sopen00g004420' => 'spe', 'Sopen00g004460' => 'spe', 'Sopen00g004470' => 'spe', 'Sopen00g004480' => 'spe', 'Sopen00g004500' => 'spe', 'Sopen00g004510' => 'spe', 'Sopen00g004520' => 'spe', 'Sopen00g004550' => 'spe', 'Sopen00g004710' => 'spe', 'Sopen00g004720' => 'spe', 'Sopen00g004780' => 'spe', 'Sopen00g004850' => 'spe', 'Sopen00g004860' => 'spe', 'Sopen00g004940' => 'spe', 'Sopen00g005170' => 'spe', 'Sopen00g005200' => 'spe', 'Sopen00g005210' => 'spe', 'Sopen00g005280' => 'spe', 'Sopen00g005300' => 'spe', 'Sopen00g005340' => 'spe', 'Sopen00g005400' => 'spe', 'Sopen00g005440' => 'spe', 'Sopen00g005480' => 'spe', 'Sopen00g005510' => 'spe', 'Sopen00g005520' => 'spe', 'Sopen00g005550' => 'spe', 'Sopen00g005570' => 'spe', 'Sopen00g005580' => 'spe', 'Sopen00g005680' => 'spe', 'Sopen00g005710' => 'spe', 'Sopen00g005770' => 'spe', 'Sopen00g005780' => 'spe', 'Sopen00g005900' => 'spe', 'Sopen00g005960' => 'spe', 'Sopen00g005980' => 'spe', 'Sopen00g006010' => 'spe', 'Sopen00g006040' => 'spe', 'Sopen00g006060' => 'spe', 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'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001275', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '492', 'num_species' => '5' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001275' ) ), 'genes' => array( 'CBR_g48875' => 'cbr', 'Nn3g20827' => 'nnu', 'PGSC0003DMG400044391' => 'stu', 'Solyc00g006650.1' => 'sly', 'Solyc00g007920.1' => 'sly', 'Solyc00g007930.1' => 'sly', 'Solyc00g007940.1' => 'sly', 'Solyc00g016590.1' => 'sly', 'Solyc00g500005.1' => 'sly', 'Solyc00g500007.1' => 'sly', 'Solyc00g500008.1' => 'sly', 'Solyc00g500009.1' => 'sly', 'Solyc00g500010.1' => 'sly', 'Solyc00g500012.1' => 'sly', 'Solyc00g500015.1' => 'sly', 'Solyc00g500016.1' => 'sly', 'Solyc00g500017.1' => 'sly', 'Solyc00g500089.1' => 'sly', 'Solyc00g500161.1' => 'sly', 'Solyc00g500162.1' => 'sly', 'Solyc00g500163.1' => 'sly', 'Solyc00g500164.1' => 'sly', 'Solyc00g500165.1' => 'sly', 'Solyc00g500174.1' => 'sly', 'Solyc00g500175.1' => 'sly', 'Solyc00g500176.1' => 'sly', 'Solyc00g500178.1' => 'sly', 'Solyc00g500233.1' => 'sly', 'Solyc00g500265.1' => 'sly', 'Solyc00g500266.1' => 'sly', 'Solyc00g500267.1' => 'sly', 'Solyc00g500288.1' => 'sly', 'Solyc00g500306.1' => 'sly', 'Solyc00g500307.1' => 'sly', 'Solyc00g500368.1' => 'sly', 'Solyc00g500369.1' => 'sly', 'Solyc00g500370.1' => 'sly', 'Solyc00g500371.1' => 'sly', 'Solyc00g500372.1' => 'sly', 'Solyc00g500375.1' => 'sly', 'Solyc00g500382.1' => 'sly', 'Solyc00g500383.1' => 'sly', 'Solyc00g500388.1' => 'sly', 'Solyc00g500389.1' => 'sly', 'Solyc00g500390.1' => 'sly', 'Solyc00g500391.1' => 'sly', 'Solyc00g500392.1' => 'sly', 'Solyc00g500393.1' => 'sly', 'Solyc00g500394.1' => 'sly', 'Solyc00g500396.1' => 'sly', 'Solyc00g500397.1' => 'sly', 'Solyc00g500399.1' => 'sly', 'Solyc00g500400.1' => 'sly', 'Solyc00g500401.1' => 'sly', 'Solyc00g500402.1' => 'sly', 'Solyc00g500403.1' => 'sly', 'Solyc00g500404.1' => 'sly', 'Solyc01g028980.1' => 'sly', 'Solyc01g038230.1' => 'sly', 'Solyc01g038232.1' => 'sly', 'Solyc01g038238.1' => 'sly', 'Solyc02g005560.1' => 'sly', 'Solyc02g005570.1' => 'sly', 'Solyc02g005580.1' => 'sly', 'Solyc02g049100.1' => 'sly', 'Solyc03g046593.1' => 'sly', 'Solyc03g046595.1' => 'sly', 'Solyc03g150119.1' => 'sly', 'Solyc03g150120.1' => 'sly', 'Solyc04g039775.1' => 'sly', 'Solyc06g010130.1' => 'sly', 'Solyc06g010140.1' => 'sly', 'Solyc06g011661.1' => 'sly', 'Solyc06g011664.1' => 'sly', 'Solyc06g011669.1' => 'sly', 'Solyc06g016673.1' => 'sly', 'Solyc06g016677.1' => 'sly', 'Solyc06g016720.3' => 'sly', 'Solyc06g016730.1' => 'sly', 'Solyc07g020795.1' => 'sly', 'Solyc08g016791.1' => 'sly', 'Solyc08g016792.1' => 'sly', 'Solyc08g016794.1' => 'sly', 'Solyc08g016796.1' => 'sly', 'Solyc08g016806.1' => 'sly', 'Solyc08g016807.1' => 'sly', 'Solyc08g150109.1' => 'sly', 'Solyc08g150110.1' => 'sly', 'Solyc08g150111.1' => 'sly', 'Solyc08g150120.1' => 'sly', 'Solyc11g051171.1' => 'sly', 'Solyc11g051172.1' => 'sly', 'Solyc11g051174.1' => 'sly', 'Solyc11g051176.1' => 'sly', 'Solyc12g026360.1' => 'sly', 'Solyc12g082767.1' => 'sly', 'Solyc12g082770.3' => 'sly', 'Solyc12g082790.1' => 'sly', 'Solyc12g082791.1' => 'sly', 'Solyc12g082792.1' => 'sly', 'Solyc12g082794.1' => 'sly', 'Solyc12g082795.1' => 'sly', 'Solyc12g082796.1' => 'sly', 'Sopen00g001130' => 'spe', 'Sopen00g001170' => 'spe', 'Sopen00g001190' => 'spe', 'Sopen00g001200' => 'spe', 'Sopen00g001210' => 'spe', 'Sopen00g001230' => 'spe', 'Sopen00g001240' => 'spe', 'Sopen00g001250' => 'spe', 'Sopen00g001260' => 'spe', 'Sopen00g001280' => 'spe', 'Sopen00g001290' => 'spe', 'Sopen00g001300' => 'spe', 'Sopen00g001310' => 'spe', 'Sopen00g001320' => 'spe', 'Sopen00g001330' => 'spe', 'Sopen00g001340' => 'spe', 'Sopen00g001350' => 'spe', 'Sopen00g001380' => 'spe', 'Sopen00g001390' => 'spe', 'Sopen00g001400' => 'spe', 'Sopen00g001420' => 'spe', 'Sopen00g001470' => 'spe', 'Sopen00g001520' => 'spe', 'Sopen00g001560' => 'spe', 'Sopen00g001580' => 'spe', 'Sopen00g001600' => 'spe', 'Sopen00g001620' => 'spe', 'Sopen00g001640' => 'spe', 'Sopen00g001650' => 'spe', 'Sopen00g001700' => 'spe', 'Sopen00g001780' => 'spe', 'Sopen00g001790' => 'spe', 'Sopen00g001940' => 'spe', 'Sopen00g002010' => 'spe', 'Sopen00g002030' => 'spe', 'Sopen00g002040' => 'spe', 'Sopen00g002070' => 'spe', 'Sopen00g002090' => 'spe', 'Sopen00g002110' => 'spe', 'Sopen00g002130' => 'spe', 'Sopen00g002140' => 'spe', 'Sopen00g002170' => 'spe', 'Sopen00g002180' => 'spe', 'Sopen00g002190' => 'spe', 'Sopen00g002200' => 'spe', 'Sopen00g002350' => 'spe', 'Sopen00g002450' => 'spe', 'Sopen00g002470' => 'spe', 'Sopen00g002480' => 'spe', 'Sopen00g002500' => 'spe', 'Sopen00g002580' => 'spe', 'Sopen00g002600' => 'spe', 'Sopen00g002780' => 'spe', 'Sopen00g002790' => 'spe', 'Sopen00g002830' => 'spe', 'Sopen00g002850' => 'spe', 'Sopen00g002870' => 'spe', 'Sopen00g002920' => 'spe', 'Sopen00g002960' => 'spe', 'Sopen00g003070' => 'spe', 'Sopen00g003080' => 'spe', 'Sopen00g003490' => 'spe', 'Sopen00g003500' => 'spe', 'Sopen00g003510' => 'spe', 'Sopen00g003570' => 'spe', 'Sopen00g003640' => 'spe', 'Sopen00g003650' => 'spe', 'Sopen00g003790' => 'spe', 'Sopen00g003800' => 'spe', 'Sopen00g003820' => 'spe', 'Sopen00g003840' => 'spe', 'Sopen00g003860' => 'spe', 'Sopen00g003880' => 'spe', 'Sopen00g003890' => 'spe', 'Sopen00g003910' => 'spe', 'Sopen00g003970' => 'spe', 'Sopen00g004000' => 'spe', 'Sopen00g004040' => 'spe', 'Sopen00g004160' => 'spe', 'Sopen00g004250' => 'spe', 'Sopen00g004340' => 'spe', 'Sopen00g004380' => 'spe', 'Sopen00g004390' => 'spe', 'Sopen00g004400' => 'spe', 'Sopen00g004410' => 'spe', 'Sopen00g004420' => 'spe', 'Sopen00g004460' => 'spe', 'Sopen00g004470' => 'spe', 'Sopen00g004480' => 'spe', 'Sopen00g004500' => 'spe', 'Sopen00g004510' => 'spe', 'Sopen00g004520' => 'spe', 'Sopen00g004550' => 'spe', 'Sopen00g004710' => 'spe', 'Sopen00g004720' => 'spe', 'Sopen00g004780' => 'spe', 'Sopen00g004850' => 'spe', 'Sopen00g004860' => 'spe', 'Sopen00g004940' => 'spe', 'Sopen00g005170' => 'spe', 'Sopen00g005200' => 'spe', 'Sopen00g005210' => 'spe', 'Sopen00g005280' => 'spe', 'Sopen00g005300' => 'spe', 'Sopen00g005340' => 'spe', 'Sopen00g005400' => 'spe', 'Sopen00g005440' => 'spe', 'Sopen00g005480' => 'spe', 'Sopen00g005510' => 'spe', 'Sopen00g005520' => 'spe', 'Sopen00g005550' => 'spe', 'Sopen00g005570' => 'spe', 'Sopen00g005580' => 'spe', 'Sopen00g005680' => 'spe', 'Sopen00g005710' => 'spe', 'Sopen00g005770' => 'spe', 'Sopen00g005780' => 'spe', 'Sopen00g005900' => 'spe', 'Sopen00g005960' => 'spe', 'Sopen00g005980' => 'spe', 'Sopen00g006010' => 'spe', 'Sopen00g006040' => 'spe', 'Sopen00g006060' => 'spe', 'Sopen00g006080' => 'spe', 'Sopen00g006090' => 'spe', 'Sopen00g006120' => 'spe', 'Sopen00g006160' => 'spe', 'Sopen00g006180' => 'spe', 'Sopen00g006220' => 'spe', 'Sopen00g006240' => 'spe', 'Sopen00g006250' => 'spe', 'Sopen00g006260' => 'spe', 'Sopen00g006290' => 'spe', 'Sopen00g006300' => 'spe', 'Sopen00g006330' => 'spe', 'Sopen00g006370' => 'spe', 'Sopen00g006380' => 'spe', 'Sopen00g006400' => 'spe', 'Sopen00g006410' => 'spe', 'Sopen00g006530' => 'spe', 'Sopen00g006550' => 'spe', 'Sopen00g006570' => 'spe', 'Sopen00g006670' => 'spe', 'Sopen00g006680' => 'spe', 'Sopen00g006700' => 'spe', 'Sopen00g006720' => 'spe', 'Sopen00g006850' => 'spe', 'Sopen00g006860' => 'spe', 'Sopen00g006890' => 'spe', 'Sopen00g006930' => 'spe', 'Sopen00g006970' => 'spe', 'Sopen00g006980' => 'spe', 'Sopen00g007020' => 'spe', 'Sopen00g007160' => 'spe', 'Sopen00g007170' => 'spe', 'Sopen00g007240' => 'spe', 'Sopen00g007250' => 'spe', 'Sopen00g007270' => 'spe', 'Sopen00g007280' => 'spe', 'Sopen00g007340' => 'spe', 'Sopen00g007390' => 'spe', 'Sopen00g007470' => 'spe', 'Sopen00g007480' => 'spe', 'Sopen00g007510' => 'spe', 'Sopen00g007550' => 'spe', 'Sopen00g007570' => 'spe', 'Sopen00g007580' => 'spe', 'Sopen00g007590' => 'spe', 'Sopen00g007610' => 'spe', 'Sopen00g007640' => 'spe', 'Sopen00g007750' => 'spe', 'Sopen00g007760' => 'spe', 'Sopen00g007780' => 'spe', 'Sopen00g007900' => 'spe', 'Sopen00g008020' => 'spe', 'Sopen00g008060' => 'spe', 'Sopen00g008150' => 'spe', 'Sopen00g008210' => 'spe', 'Sopen00g008220' => 'spe', 'Sopen00g008310' => 'spe', 'Sopen00g008320' => 'spe', 'Sopen00g008340' => 'spe', 'Sopen00g008410' => 'spe', 'Sopen00g008490' => 'spe', 'Sopen00g008540' => 'spe', 'Sopen00g008590' => 'spe', 'Sopen00g008650' => 'spe', 'Sopen00g008660' => 'spe', 'Sopen00g008770' => 'spe', 'Sopen00g008790' => 'spe', 'Sopen00g008850' => 'spe', 'Sopen00g008860' => 'spe', 'Sopen00g008900' => 'spe', 'Sopen00g009030' => 'spe', 'Sopen00g009070' => 'spe', 'Sopen00g009110' => 'spe', 'Sopen00g009160' => 'spe', 'Sopen00g009210' => 'spe', 'Sopen00g009300' => 'spe', 'Sopen00g009440' => 'spe', 'Sopen00g009480' => 'spe', 'Sopen00g009520' => 'spe', 'Sopen00g009680' => 'spe', 'Sopen00g009780' => 'spe', 'Sopen00g009850' => 'spe', 'Sopen00g009890' => 'spe', 'Sopen00g009920' => 'spe', 'Sopen00g010100' => 'spe', 'Sopen00g010160' => 'spe', 'Sopen00g010170' => 'spe', 'Sopen00g010240' => 'spe', 'Sopen00g010310' => 'spe', 'Sopen00g010320' => 'spe', 'Sopen00g010360' => 'spe', 'Sopen00g010530' => 'spe', 'Sopen00g010540' => 'spe', 'Sopen00g010590' => 'spe', 'Sopen00g010620' => 'spe', 'Sopen00g010640' => 'spe', 'Sopen00g010650' => 'spe', 'Sopen00g010670' => 'spe', 'Sopen00g010680' => 'spe', 'Sopen00g010730' => 'spe', 'Sopen00g010750' => 'spe', 'Sopen00g010780' => 'spe', 'Sopen00g010820' => 'spe', 'Sopen00g010840' => 'spe', 'Sopen00g010950' => 'spe', 'Sopen00g010960' => 'spe', 'Sopen00g010980' => 'spe', 'Sopen00g011010' => 'spe', 'Sopen00g011060' => 'spe', 'Sopen00g011070' => 'spe', 'Sopen00g011100' => 'spe', 'Sopen00g011120' => 'spe', 'Sopen00g011140' => 'spe', 'Sopen00g011170' => 'spe', 'Sopen00g011200' => 'spe', 'Sopen00g011220' => 'spe', 'Sopen00g011270' => 'spe', 'Sopen00g011280' => 'spe', 'Sopen00g011300' => 'spe', 'Sopen00g011310' => 'spe', 'Sopen00g011400' => 'spe', 'Sopen00g011460' => 'spe', 'Sopen00g011490' => 'spe', 'Sopen00g011510' => 'spe', 'Sopen00g011520' => 'spe', 'Sopen00g011540' => 'spe', 'Sopen00g011570' => 'spe', 'Sopen00g011610' => 'spe', 'Sopen00g011740' => 'spe', 'Sopen00g011860' => 'spe', 'Sopen00g011870' => 'spe', 'Sopen00g011890' => 'spe', 'Sopen00g011900' => 'spe', 'Sopen00g011920' => 'spe', 'Sopen00g011950' => 'spe', 'Sopen00g011960' => 'spe', 'Sopen00g011980' => 'spe', 'Sopen00g012060' => 'spe', 'Sopen00g012090' => 'spe', 'Sopen00g012110' => 'spe', 'Sopen00g012130' => 'spe', 'Sopen00g012140' => 'spe', 'Sopen00g012150' => 'spe', 'Sopen00g012170' => 'spe', 'Sopen00g012180' => 'spe', 'Sopen00g012200' => 'spe', 'Sopen00g012210' => 'spe', 'Sopen00g012240' => 'spe', 'Sopen00g012270' => 'spe', 'Sopen00g012280' => 'spe', 'Sopen00g012290' => 'spe', 'Sopen00g012300' => 'spe', 'Sopen00g012320' => 'spe', 'Sopen00g012360' => 'spe', 'Sopen00g012380' => 'spe', 'Sopen00g012430' => 'spe', 'Sopen00g012440' => 'spe', 'Sopen00g012450' => 'spe', 'Sopen00g012460' => 'spe', 'Sopen00g012470' => 'spe', 'Sopen00g012480' => 'spe', 'Sopen00g012530' => 'spe', 'Sopen00g012640' => 'spe', 'Sopen00g012800' => 'spe', 'Sopen00g012900' => 'spe', 'Sopen00g012920' => 'spe', 'Sopen00g013220' => 'spe', 'Sopen00g013240' => 'spe', 'Sopen00g013250' => 'spe', 'Sopen00g013260' => 'spe', 'Sopen00g013310' => 'spe', 'Sopen00g013560' => 'spe', 'Sopen00g013640' => 'spe', 'Sopen00g013670' => 'spe', 'Sopen00g013710' => 'spe', 'Sopen00g013740' => 'spe', 'Sopen00g014040' => 'spe', 'Sopen00g014140' => 'spe', 'Sopen00g014250' => 'spe', 'Sopen00g014300' => 'spe', 'Sopen00g014310' => 'spe', 'Sopen00g014320' => 'spe', 'Sopen00g014330' => 'spe', 'Sopen00g014340' => 'spe', 'Sopen00g014370' => 'spe', 'Sopen00g014380' => 'spe', 'Sopen01g017930' => 'spe', 'Sopen01g017940' => 'spe', 'Sopen02g002410' => 'spe', 'Sopen02g002440' => 'spe', 'Sopen02g002460' => 'spe', 'Sopen02g002470' => 'spe', 'Sopen02g002490' => 'spe', 'Sopen02g002660' => 'spe', 'Sopen02g002670' => 'spe', 'Sopen02g002690' => 'spe', 'Sopen02g005030' => 'spe', 'Sopen02g005060' => 'spe', 'Sopen02g005580' => 'spe', 'Sopen02g005600' => 'spe', 'Sopen02g005620' => 'spe', 'Sopen02g005640' => 'spe', 'Sopen02g005650' => 'spe', 'Sopen02g006940' => 'spe', 'Sopen02g006960' => 'spe', 'Sopen02g006990' => 'spe', 'Sopen02g007010' => 'spe', 'Sopen02g007080' => 'spe', 'Sopen02g007220' => 'spe', 'Sopen02g008120' => 'spe', 'Sopen02g008130' => 'spe', 'Sopen02g008170' => 'spe', 'Sopen02g008180' => 'spe', 'Sopen02g008210' => 'spe', 'Sopen02g008320' => 'spe', 'Sopen03g019040' => 'spe', 'Sopen03g019050' => 'spe', 'Sopen03g019060' => 'spe', 'Sopen03g019070' => 'spe', 'Sopen04g010220' => 'spe', 'Sopen04g010230' => 'spe', 'Sopen04g010240' => 'spe', 'Sopen04g010270' => 'spe', 'Sopen04g010280' => 'spe', 'Sopen04g010300' => 'spe', 'Sopen04g016160' => 'spe', 'Sopen04g024070' => 'spe', 'Sopen05g022490' => 'spe', 'Sopen06g004910' => 'spe', 'Sopen06g004940' => 'spe', 'Sopen06g004950' => 'spe', 'Sopen06g007060' => 'spe', 'Sopen06g007070' => 'spe', 'Sopen06g007080' => 'spe', 'Sopen06g007090' => 'spe', 'Sopen06g007130' => 'spe', 'Sopen06g007180' => 'spe', 'Sopen06g007530' => 'spe', 'Sopen06g009240' => 'spe', 'Sopen06g009260' => 'spe', 'Sopen06g009280' => 'spe', 'Sopen06g016680' => 'spe', 'Sopen06g016700' => 'spe', 'Sopen07g009420' => 'spe', 'Sopen07g009500' => 'spe', 'Sopen08g007410' => 'spe', 'Sopen09g010080' => 'spe', 'Sopen09g010100' => 'spe', 'Sopen12g011570' => 'spe', 'Sopen12g012170' => 'spe', 'Sopen12g012180' => 'spe', 'Sopen12g012190' => 'spe', 'Sopen12g012200' => 'spe', 'Sopen12g012210' => 'spe', 'Sopen12g012230' => 'spe', 'Sopen12g012240' => 'spe', 'Sopen12g012260' => 'spe', 'Sopen12g012270' => 'spe', 'Sopen12g012280' => 'spe', 'Sopen12g012290' => 'spe', 'Sopen12g012300' => 'spe', 'Sopen12g012310' => 'spe', 'Sopen12g012980' => 'spe', 'Sopen12g015550' => 'spe', 'Sopen12g024800' => 'spe', 'Sopen12g025480' => 'spe' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001275' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001275' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001275' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001275' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001275', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '492', 'num_species' => '5' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'CBR_g48875' => 'cbr', 'Nn3g20827' => 'nnu', 'PGSC0003DMG400044391' => 'stu', 'Solyc00g006650.1' => 'sly', 'Solyc00g007920.1' => 'sly', 'Solyc00g007930.1' => 'sly', 'Solyc00g007940.1' => 'sly', 'Solyc00g016590.1' => 'sly', 'Solyc00g500005.1' => 'sly', 'Solyc00g500007.1' => 'sly', 'Solyc00g500008.1' => 'sly', 'Solyc00g500009.1' => 'sly', 'Solyc00g500010.1' => 'sly', 'Solyc00g500012.1' => 'sly', 'Solyc00g500015.1' => 'sly', 'Solyc00g500016.1' => 'sly', 'Solyc00g500017.1' => 'sly', 'Solyc00g500089.1' => 'sly', 'Solyc00g500161.1' => 'sly', 'Solyc00g500162.1' => 'sly', 'Solyc00g500163.1' => 'sly', 'Solyc00g500164.1' => 'sly', 'Solyc00g500165.1' => 'sly', 'Solyc00g500174.1' => 'sly', 'Solyc00g500175.1' => 'sly', 'Solyc00g500176.1' => 'sly', 'Solyc00g500178.1' => 'sly', 'Solyc00g500233.1' => 'sly', 'Solyc00g500265.1' => 'sly', 'Solyc00g500266.1' => 'sly', 'Solyc00g500267.1' => 'sly', 'Solyc00g500288.1' => 'sly', 'Solyc00g500306.1' => 'sly', 'Solyc00g500307.1' => 'sly', 'Solyc00g500368.1' => 'sly', 'Solyc00g500369.1' => 'sly', 'Solyc00g500370.1' => 'sly', 'Solyc00g500371.1' => 'sly', 'Solyc00g500372.1' => 'sly', 'Solyc00g500375.1' => 'sly', 'Solyc00g500382.1' => 'sly', 'Solyc00g500383.1' => 'sly', 'Solyc00g500388.1' => 'sly', 'Solyc00g500389.1' => 'sly', 'Solyc00g500390.1' => 'sly', 'Solyc00g500391.1' => 'sly', 'Solyc00g500392.1' => 'sly', 'Solyc00g500393.1' => 'sly', 'Solyc00g500394.1' => 'sly', 'Solyc00g500396.1' => 'sly', 'Solyc00g500397.1' => 'sly', 'Solyc00g500399.1' => 'sly', 'Solyc00g500400.1' => 'sly', 'Solyc00g500401.1' => 'sly', 'Solyc00g500402.1' => 'sly', 'Solyc00g500403.1' => 'sly', 'Solyc00g500404.1' => 'sly', 'Solyc01g028980.1' => 'sly', 'Solyc01g038230.1' => 'sly', 'Solyc01g038232.1' => 'sly', 'Solyc01g038238.1' => 'sly', 'Solyc02g005560.1' => 'sly', 'Solyc02g005570.1' => 'sly', 'Solyc02g005580.1' => 'sly', 'Solyc02g049100.1' => 'sly', 'Solyc03g046593.1' => 'sly', 'Solyc03g046595.1' => 'sly', 'Solyc03g150119.1' => 'sly', 'Solyc03g150120.1' => 'sly', 'Solyc04g039775.1' => 'sly', 'Solyc06g010130.1' => 'sly', 'Solyc06g010140.1' => 'sly', 'Solyc06g011661.1' => 'sly', 'Solyc06g011664.1' => 'sly', 'Solyc06g011669.1' => 'sly', 'Solyc06g016673.1' => 'sly', 'Solyc06g016677.1' => 'sly', 'Solyc06g016720.3' => 'sly', 'Solyc06g016730.1' => 'sly', 'Solyc07g020795.1' => 'sly', 'Solyc08g016791.1' => 'sly', 'Solyc08g016792.1' => 'sly', 'Solyc08g016794.1' => 'sly', 'Solyc08g016796.1' => 'sly', 'Solyc08g016806.1' => 'sly', 'Solyc08g016807.1' => 'sly', 'Solyc08g150109.1' => 'sly', 'Solyc08g150110.1' => 'sly', 'Solyc08g150111.1' => 'sly', 'Solyc08g150120.1' => 'sly', 'Solyc11g051171.1' => 'sly', 'Solyc11g051172.1' => 'sly', 'Solyc11g051174.1' => 'sly', 'Solyc11g051176.1' => 'sly', 'Solyc12g026360.1' => 'sly', 'Solyc12g082767.1' => 'sly', 'Solyc12g082770.3' => 'sly', 'Solyc12g082790.1' => 'sly', 'Solyc12g082791.1' => 'sly', 'Solyc12g082792.1' => 'sly', 'Solyc12g082794.1' => 'sly', 'Solyc12g082795.1' => 'sly', 'Solyc12g082796.1' => 'sly', 'Sopen00g001130' => 'spe', 'Sopen00g001170' => 'spe', 'Sopen00g001190' => 'spe', 'Sopen00g001200' => 'spe', 'Sopen00g001210' => 'spe', 'Sopen00g001230' => 'spe', 'Sopen00g001240' => 'spe', 'Sopen00g001250' => 'spe', 'Sopen00g001260' => 'spe', 'Sopen00g001280' => 'spe', 'Sopen00g001290' => 'spe', 'Sopen00g001300' => 'spe', 'Sopen00g001310' => 'spe', 'Sopen00g001320' => 'spe', 'Sopen00g001330' => 'spe', 'Sopen00g001340' => 'spe', 'Sopen00g001350' => 'spe', 'Sopen00g001380' => 'spe', 'Sopen00g001390' => 'spe', 'Sopen00g001400' => 'spe', 'Sopen00g001420' => 'spe', 'Sopen00g001470' => 'spe', 'Sopen00g001520' => 'spe', 'Sopen00g001560' => 'spe', 'Sopen00g001580' => 'spe', 'Sopen00g001600' => 'spe', 'Sopen00g001620' => 'spe', 'Sopen00g001640' => 'spe', 'Sopen00g001650' => 'spe', 'Sopen00g001700' => 'spe', 'Sopen00g001780' => 'spe', 'Sopen00g001790' => 'spe', 'Sopen00g001940' => 'spe', 'Sopen00g002010' => 'spe', 'Sopen00g002030' => 'spe', 'Sopen00g002040' => 'spe', 'Sopen00g002070' => 'spe', 'Sopen00g002090' => 'spe', 'Sopen00g002110' => 'spe', 'Sopen00g002130' => 'spe', 'Sopen00g002140' => 'spe', 'Sopen00g002170' => 'spe', 'Sopen00g002180' => 'spe', 'Sopen00g002190' => 'spe', 'Sopen00g002200' => 'spe', 'Sopen00g002350' => 'spe', 'Sopen00g002450' => 'spe', 'Sopen00g002470' => 'spe', 'Sopen00g002480' => 'spe', 'Sopen00g002500' => 'spe', 'Sopen00g002580' => 'spe', 'Sopen00g002600' => 'spe', 'Sopen00g002780' => 'spe', 'Sopen00g002790' => 'spe', 'Sopen00g002830' => 'spe', 'Sopen00g002850' => 'spe', 'Sopen00g002870' => 'spe', 'Sopen00g002920' => 'spe', 'Sopen00g002960' => 'spe', 'Sopen00g003070' => 'spe', 'Sopen00g003080' => 'spe', 'Sopen00g003490' => 'spe', 'Sopen00g003500' => 'spe', 'Sopen00g003510' => 'spe', 'Sopen00g003570' => 'spe', 'Sopen00g003640' => 'spe', 'Sopen00g003650' => 'spe', 'Sopen00g003790' => 'spe', 'Sopen00g003800' => 'spe', 'Sopen00g003820' => 'spe', 'Sopen00g003840' => 'spe', 'Sopen00g003860' => 'spe', 'Sopen00g003880' => 'spe', 'Sopen00g003890' => 'spe', 'Sopen00g003910' => 'spe', 'Sopen00g003970' => 'spe', 'Sopen00g004000' => 'spe', 'Sopen00g004040' => 'spe', 'Sopen00g004160' => 'spe', 'Sopen00g004250' => 'spe', 'Sopen00g004340' => 'spe', 'Sopen00g004380' => 'spe', 'Sopen00g004390' => 'spe', 'Sopen00g004400' => 'spe', 'Sopen00g004410' => 'spe', 'Sopen00g004420' => 'spe', 'Sopen00g004460' => 'spe', 'Sopen00g004470' => 'spe', 'Sopen00g004480' => 'spe', 'Sopen00g004500' => 'spe', 'Sopen00g004510' => 'spe', 'Sopen00g004520' => 'spe', 'Sopen00g004550' => 'spe', 'Sopen00g004710' => 'spe', 'Sopen00g004720' => 'spe', 'Sopen00g004780' => 'spe', 'Sopen00g004850' => 'spe', 'Sopen00g004860' => 'spe', 'Sopen00g004940' => 'spe', 'Sopen00g005170' => 'spe', 'Sopen00g005200' => 'spe', 'Sopen00g005210' => 'spe', 'Sopen00g005280' => 'spe', 'Sopen00g005300' => 'spe', 'Sopen00g005340' => 'spe', 'Sopen00g005400' => 'spe', 'Sopen00g005440' => 'spe', 'Sopen00g005480' => 'spe', 'Sopen00g005510' => 'spe', 'Sopen00g005520' => 'spe', 'Sopen00g005550' => 'spe', 'Sopen00g005570' => 'spe', 'Sopen00g005580' => 'spe', 'Sopen00g005680' => 'spe', 'Sopen00g005710' => 'spe', 'Sopen00g005770' => 'spe', 'Sopen00g005780' => 'spe', 'Sopen00g005900' => 'spe', 'Sopen00g005960' => 'spe', 'Sopen00g005980' => 'spe', 'Sopen00g006010' => 'spe', 'Sopen00g006040' => 'spe', 'Sopen00g006060' => 'spe', 'Sopen00g006080' => 'spe', 'Sopen00g006090' => 'spe', 'Sopen00g006120' => 'spe', 'Sopen00g006160' => 'spe', 'Sopen00g006180' => 'spe', 'Sopen00g006220' => 'spe', 'Sopen00g006240' => 'spe', 'Sopen00g006250' => 'spe', 'Sopen00g006260' => 'spe', 'Sopen00g006290' => 'spe', 'Sopen00g006300' => 'spe', 'Sopen00g006330' => 'spe', 'Sopen00g006370' => 'spe', 'Sopen00g006380' => 'spe', 'Sopen00g006400' => 'spe', 'Sopen00g006410' => 'spe', 'Sopen00g006530' => 'spe', 'Sopen00g006550' => 'spe', 'Sopen00g006570' => 'spe', 'Sopen00g006670' => 'spe', 'Sopen00g006680' => 'spe', 'Sopen00g006700' => 'spe', 'Sopen00g006720' => 'spe', 'Sopen00g006850' => 'spe', 'Sopen00g006860' => 'spe', 'Sopen00g006890' => 'spe', 'Sopen00g006930' => 'spe', 'Sopen00g006970' => 'spe', 'Sopen00g006980' => 'spe', 'Sopen00g007020' => 'spe', 'Sopen00g007160' => 'spe', 'Sopen00g007170' => 'spe', 'Sopen00g007240' => 'spe', 'Sopen00g007250' => 'spe', 'Sopen00g007270' => 'spe', 'Sopen00g007280' => 'spe', 'Sopen00g007340' => 'spe', 'Sopen00g007390' => 'spe', 'Sopen00g007470' => 'spe', 'Sopen00g007480' => 'spe', 'Sopen00g007510' => 'spe', 'Sopen00g007550' => 'spe', 'Sopen00g007570' => 'spe', 'Sopen00g007580' => 'spe', 'Sopen00g007590' => 'spe', 'Sopen00g007610' => 'spe', 'Sopen00g007640' => 'spe', 'Sopen00g007750' => 'spe', 'Sopen00g007760' => 'spe', 'Sopen00g007780' => 'spe', 'Sopen00g007900' => 'spe', 'Sopen00g008020' => 'spe', 'Sopen00g008060' => 'spe', 'Sopen00g008150' => 'spe', 'Sopen00g008210' => 'spe', 'Sopen00g008220' => 'spe', 'Sopen00g008310' => 'spe', 'Sopen00g008320' => 'spe', 'Sopen00g008340' => 'spe', 'Sopen00g008410' => 'spe', 'Sopen00g008490' => 'spe', 'Sopen00g008540' => 'spe', 'Sopen00g008590' => 'spe', 'Sopen00g008650' => 'spe', 'Sopen00g008660' => 'spe', 'Sopen00g008770' => 'spe', 'Sopen00g008790' => 'spe', 'Sopen00g008850' => 'spe', 'Sopen00g008860' => 'spe', 'Sopen00g008900' => 'spe', 'Sopen00g009030' => 'spe', 'Sopen00g009070' => 'spe', 'Sopen00g009110' => 'spe', 'Sopen00g009160' => 'spe', 'Sopen00g009210' => 'spe', 'Sopen00g009300' => 'spe', 'Sopen00g009440' => 'spe', 'Sopen00g009480' => 'spe', 'Sopen00g009520' => 'spe', 'Sopen00g009680' => 'spe', 'Sopen00g009780' => 'spe', 'Sopen00g009850' => 'spe', 'Sopen00g009890' => 'spe', 'Sopen00g009920' => 'spe', 'Sopen00g010100' => 'spe', 'Sopen00g010160' => 'spe', 'Sopen00g010170' => 'spe', 'Sopen00g010240' => 'spe', 'Sopen00g010310' => 'spe', 'Sopen00g010320' => 'spe', 'Sopen00g010360' => 'spe', 'Sopen00g010530' => 'spe', 'Sopen00g010540' => 'spe', 'Sopen00g010590' => 'spe', 'Sopen00g010620' => 'spe', 'Sopen00g010640' => 'spe', 'Sopen00g010650' => 'spe', 'Sopen00g010670' => 'spe', 'Sopen00g010680' => 'spe', 'Sopen00g010730' => 'spe', 'Sopen00g010750' => 'spe', 'Sopen00g010780' => 'spe', 'Sopen00g010820' => 'spe', 'Sopen00g010840' => 'spe', 'Sopen00g010950' => 'spe', 'Sopen00g010960' => 'spe', 'Sopen00g010980' => 'spe', 'Sopen00g011010' => 'spe', 'Sopen00g011060' => 'spe', 'Sopen00g011070' => 'spe', 'Sopen00g011100' => 'spe', 'Sopen00g011120' => 'spe', 'Sopen00g011140' => 'spe', 'Sopen00g011170' => 'spe', 'Sopen00g011200' => 'spe', 'Sopen00g011220' => 'spe', 'Sopen00g011270' => 'spe', 'Sopen00g011280' => 'spe', 'Sopen00g011300' => 'spe', 'Sopen00g011310' => 'spe', 'Sopen00g011400' => 'spe', 'Sopen00g011460' => 'spe', 'Sopen00g011490' => 'spe', 'Sopen00g011510' => 'spe', 'Sopen00g011520' => 'spe', 'Sopen00g011540' => 'spe', 'Sopen00g011570' => 'spe', 'Sopen00g011610' => 'spe', 'Sopen00g011740' => 'spe', 'Sopen00g011860' => 'spe', 'Sopen00g011870' => 'spe', 'Sopen00g011890' => 'spe', 'Sopen00g011900' => 'spe', 'Sopen00g011920' => 'spe', 'Sopen00g011950' => 'spe', 'Sopen00g011960' => 'spe', 'Sopen00g011980' => 'spe', 'Sopen00g012060' => 'spe', 'Sopen00g012090' => 'spe', 'Sopen00g012110' => 'spe', 'Sopen00g012130' => 'spe', 'Sopen00g012140' => 'spe', 'Sopen00g012150' => 'spe', 'Sopen00g012170' => 'spe', 'Sopen00g012180' => 'spe', 'Sopen00g012200' => 'spe', 'Sopen00g012210' => 'spe', 'Sopen00g012240' => 'spe', 'Sopen00g012270' => 'spe', 'Sopen00g012280' => 'spe', 'Sopen00g012290' => 'spe', 'Sopen00g012300' => 'spe', 'Sopen00g012320' => 'spe', 'Sopen00g012360' => 'spe', 'Sopen00g012380' => 'spe', 'Sopen00g012430' => 'spe', 'Sopen00g012440' => 'spe', 'Sopen00g012450' => 'spe', 'Sopen00g012460' => 'spe', 'Sopen00g012470' => 'spe', 'Sopen00g012480' => 'spe', 'Sopen00g012530' => 'spe', 'Sopen00g012640' => 'spe', 'Sopen00g012800' => 'spe', 'Sopen00g012900' => 'spe', 'Sopen00g012920' => 'spe', 'Sopen00g013220' => 'spe', 'Sopen00g013240' => 'spe', 'Sopen00g013250' => 'spe', 'Sopen00g013260' => 'spe', 'Sopen00g013310' => 'spe', 'Sopen00g013560' => 'spe', 'Sopen00g013640' => 'spe', 'Sopen00g013670' => 'spe', 'Sopen00g013710' => 'spe', 'Sopen00g013740' => 'spe', 'Sopen00g014040' => 'spe', 'Sopen00g014140' => 'spe', 'Sopen00g014250' => 'spe', 'Sopen00g014300' => 'spe', 'Sopen00g014310' => 'spe', 'Sopen00g014320' => 'spe', 'Sopen00g014330' => 'spe', 'Sopen00g014340' => 'spe', 'Sopen00g014370' => 'spe', 'Sopen00g014380' => 'spe', 'Sopen01g017930' => 'spe', 'Sopen01g017940' => 'spe', 'Sopen02g002410' => 'spe', 'Sopen02g002440' => 'spe', 'Sopen02g002460' => 'spe', 'Sopen02g002470' => 'spe', 'Sopen02g002490' => 'spe', 'Sopen02g002660' => 'spe', 'Sopen02g002670' => 'spe', 'Sopen02g002690' => 'spe', 'Sopen02g005030' => 'spe', 'Sopen02g005060' => 'spe', 'Sopen02g005580' => 'spe', 'Sopen02g005600' => 'spe', 'Sopen02g005620' => 'spe', 'Sopen02g005640' => 'spe', 'Sopen02g005650' => 'spe', 'Sopen02g006940' => 'spe', 'Sopen02g006960' => 'spe', 'Sopen02g006990' => 'spe', 'Sopen02g007010' => 'spe', 'Sopen02g007080' => 'spe', 'Sopen02g007220' => 'spe', 'Sopen02g008120' => 'spe', 'Sopen02g008130' => 'spe', 'Sopen02g008170' => 'spe', 'Sopen02g008180' => 'spe', 'Sopen02g008210' => 'spe', 'Sopen02g008320' => 'spe', 'Sopen03g019040' => 'spe', 'Sopen03g019050' => 'spe', 'Sopen03g019060' => 'spe', 'Sopen03g019070' => 'spe', 'Sopen04g010220' => 'spe', 'Sopen04g010230' => 'spe', 'Sopen04g010240' => 'spe', 'Sopen04g010270' => 'spe', 'Sopen04g010280' => 'spe', 'Sopen04g010300' => 'spe', 'Sopen04g016160' => 'spe', 'Sopen04g024070' => 'spe', 'Sopen05g022490' => 'spe', 'Sopen06g004910' => 'spe', 'Sopen06g004940' => 'spe', 'Sopen06g004950' => 'spe', 'Sopen06g007060' => 'spe', 'Sopen06g007070' => 'spe', 'Sopen06g007080' => 'spe', 'Sopen06g007090' => 'spe', 'Sopen06g007130' => 'spe', 'Sopen06g007180' => 'spe', 'Sopen06g007530' => 'spe', 'Sopen06g009240' => 'spe', 'Sopen06g009260' => 'spe', 'Sopen06g009280' => 'spe', 'Sopen06g016680' => 'spe', 'Sopen06g016700' => 'spe', 'Sopen07g009420' => 'spe', 'Sopen07g009500' => 'spe', 'Sopen08g007410' => 'spe', 'Sopen09g010080' => 'spe', 'Sopen09g010100' => 'spe', 'Sopen12g011570' => 'spe', 'Sopen12g012170' => 'spe', 'Sopen12g012180' => 'spe', 'Sopen12g012190' => 'spe', 'Sopen12g012200' => 'spe', 'Sopen12g012210' => 'spe', 'Sopen12g012230' => 'spe', 'Sopen12g012240' => 'spe', 'Sopen12g012260' => 'spe', 'Sopen12g012270' => 'spe', 'Sopen12g012280' => 'spe', 'Sopen12g012290' => 'spe', 'Sopen12g012300' => 'spe', 'Sopen12g012310' => 'spe', 'Sopen12g012980' => 'spe', 'Sopen12g015550' => 'spe', 'Sopen12g024800' => 'spe', 'Sopen12g025480' => 'spe' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001275', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001275' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001275', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '492', 'num_species' => '5' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001275' ) ), 'genes' => array( 'CBR_g48875' => 'cbr', 'Nn3g20827' => 'nnu', 'PGSC0003DMG400044391' => 'stu', 'Solyc00g006650.1' => 'sly', 'Solyc00g007920.1' => 'sly', 'Solyc00g007930.1' => 'sly', 'Solyc00g007940.1' => 'sly', 'Solyc00g016590.1' => 'sly', 'Solyc00g500005.1' => 'sly', 'Solyc00g500007.1' => 'sly', 'Solyc00g500008.1' => 'sly', 'Solyc00g500009.1' => 'sly', 'Solyc00g500010.1' => 'sly', 'Solyc00g500012.1' => 'sly', 'Solyc00g500015.1' => 'sly', 'Solyc00g500016.1' => 'sly', 'Solyc00g500017.1' => 'sly', 'Solyc00g500089.1' => 'sly', 'Solyc00g500161.1' => 'sly', 'Solyc00g500162.1' => 'sly', 'Solyc00g500163.1' => 'sly', 'Solyc00g500164.1' => 'sly', 'Solyc00g500165.1' => 'sly', 'Solyc00g500174.1' => 'sly', 'Solyc00g500175.1' => 'sly', 'Solyc00g500176.1' => 'sly', 'Solyc00g500178.1' => 'sly', 'Solyc00g500233.1' => 'sly', 'Solyc00g500265.1' => 'sly', 'Solyc00g500266.1' => 'sly', 'Solyc00g500267.1' => 'sly', 'Solyc00g500288.1' => 'sly', 'Solyc00g500306.1' => 'sly', 'Solyc00g500307.1' => 'sly', 'Solyc00g500368.1' => 'sly', 'Solyc00g500369.1' => 'sly', 'Solyc00g500370.1' => 'sly', 'Solyc00g500371.1' => 'sly', 'Solyc00g500372.1' => 'sly', 'Solyc00g500375.1' => 'sly', 'Solyc00g500382.1' => 'sly', 'Solyc00g500383.1' => 'sly', 'Solyc00g500388.1' => 'sly', 'Solyc00g500389.1' => 'sly', 'Solyc00g500390.1' => 'sly', 'Solyc00g500391.1' => 'sly', 'Solyc00g500392.1' => 'sly', 'Solyc00g500393.1' => 'sly', 'Solyc00g500394.1' => 'sly', 'Solyc00g500396.1' => 'sly', 'Solyc00g500397.1' => 'sly', 'Solyc00g500399.1' => 'sly', 'Solyc00g500400.1' => 'sly', 'Solyc00g500401.1' => 'sly', 'Solyc00g500402.1' => 'sly', 'Solyc00g500403.1' => 'sly', 'Solyc00g500404.1' => 'sly', 'Solyc01g028980.1' => 'sly', 'Solyc01g038230.1' => 'sly', 'Solyc01g038232.1' => 'sly', 'Solyc01g038238.1' => 'sly', 'Solyc02g005560.1' => 'sly', 'Solyc02g005570.1' => 'sly', 'Solyc02g005580.1' => 'sly', 'Solyc02g049100.1' => 'sly', 'Solyc03g046593.1' => 'sly', 'Solyc03g046595.1' => 'sly', 'Solyc03g150119.1' => 'sly', 'Solyc03g150120.1' => 'sly', 'Solyc04g039775.1' => 'sly', 'Solyc06g010130.1' => 'sly', 'Solyc06g010140.1' => 'sly', 'Solyc06g011661.1' => 'sly', 'Solyc06g011664.1' => 'sly', 'Solyc06g011669.1' => 'sly', 'Solyc06g016673.1' => 'sly', 'Solyc06g016677.1' => 'sly', 'Solyc06g016720.3' => 'sly', 'Solyc06g016730.1' => 'sly', 'Solyc07g020795.1' => 'sly', 'Solyc08g016791.1' => 'sly', 'Solyc08g016792.1' => 'sly', 'Solyc08g016794.1' => 'sly', 'Solyc08g016796.1' => 'sly', 'Solyc08g016806.1' => 'sly', 'Solyc08g016807.1' => 'sly', 'Solyc08g150109.1' => 'sly', 'Solyc08g150110.1' => 'sly', 'Solyc08g150111.1' => 'sly', 'Solyc08g150120.1' => 'sly', 'Solyc11g051171.1' => 'sly', 'Solyc11g051172.1' => 'sly', 'Solyc11g051174.1' => 'sly', 'Solyc11g051176.1' => 'sly', 'Solyc12g026360.1' => 'sly', 'Solyc12g082767.1' => 'sly', 'Solyc12g082770.3' => 'sly', 'Solyc12g082790.1' => 'sly', 'Solyc12g082791.1' => 'sly', 'Solyc12g082792.1' => 'sly', 'Solyc12g082794.1' => 'sly', 'Solyc12g082795.1' => 'sly', 'Solyc12g082796.1' => 'sly', 'Sopen00g001130' => 'spe', 'Sopen00g001170' 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=> 'spe', 'Sopen12g012170' => 'spe', 'Sopen12g012180' => 'spe', 'Sopen12g012190' => 'spe', 'Sopen12g012200' => 'spe', 'Sopen12g012210' => 'spe', 'Sopen12g012230' => 'spe', 'Sopen12g012240' => 'spe', 'Sopen12g012260' => 'spe', 'Sopen12g012270' => 'spe', 'Sopen12g012280' => 'spe', 'Sopen12g012290' => 'spe', 'Sopen12g012300' => 'spe', 'Sopen12g012310' => 'spe', 'Sopen12g012980' => 'spe', 'Sopen12g015550' => 'spe', 'Sopen12g024800' => 'spe', 'Sopen12g025480' => 'spe' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001275' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001275' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001275' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001275' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001275', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '492', 'num_species' => '5' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'CBR_g48875' => 'cbr', 'Nn3g20827' => 'nnu', 'PGSC0003DMG400044391' => 'stu', 'Solyc00g006650.1' => 'sly', 'Solyc00g007920.1' => 'sly', 'Solyc00g007930.1' => 'sly', 'Solyc00g007940.1' => 'sly', 'Solyc00g016590.1' => 'sly', 'Solyc00g500005.1' => 'sly', 'Solyc00g500007.1' => 'sly', 'Solyc00g500008.1' => 'sly', 'Solyc00g500009.1' => 'sly', 'Solyc00g500010.1' => 'sly', 'Solyc00g500012.1' => 'sly', 'Solyc00g500015.1' => 'sly', 'Solyc00g500016.1' => 'sly', 'Solyc00g500017.1' => 'sly', 'Solyc00g500089.1' => 'sly', 'Solyc00g500161.1' => 'sly', 'Solyc00g500162.1' => 'sly', 'Solyc00g500163.1' => 'sly', 'Solyc00g500164.1' => 'sly', 'Solyc00g500165.1' => 'sly', 'Solyc00g500174.1' => 'sly', 'Solyc00g500175.1' => 'sly', 'Solyc00g500176.1' => 'sly', 'Solyc00g500178.1' => 'sly', 'Solyc00g500233.1' => 'sly', 'Solyc00g500265.1' => 'sly', 'Solyc00g500266.1' => 'sly', 'Solyc00g500267.1' => 'sly', 'Solyc00g500288.1' => 'sly', 'Solyc00g500306.1' => 'sly', 'Solyc00g500307.1' => 'sly', 'Solyc00g500368.1' => 'sly', 'Solyc00g500369.1' => 'sly', 'Solyc00g500370.1' => 'sly', 'Solyc00g500371.1' => 'sly', 'Solyc00g500372.1' => 'sly', 'Solyc00g500375.1' => 'sly', 'Solyc00g500382.1' => 'sly', 'Solyc00g500383.1' => 'sly', 'Solyc00g500388.1' => 'sly', 'Solyc00g500389.1' => 'sly', 'Solyc00g500390.1' => 'sly', 'Solyc00g500391.1' => 'sly', 'Solyc00g500392.1' => 'sly', 'Solyc00g500393.1' => 'sly', 'Solyc00g500394.1' => 'sly', 'Solyc00g500396.1' => 'sly', 'Solyc00g500397.1' => 'sly', 'Solyc00g500399.1' => 'sly', 'Solyc00g500400.1' => 'sly', 'Solyc00g500401.1' => 'sly', 'Solyc00g500402.1' => 'sly', 'Solyc00g500403.1' => 'sly', 'Solyc00g500404.1' => 'sly', 'Solyc01g028980.1' => 'sly', 'Solyc01g038230.1' => 'sly', 'Solyc01g038232.1' => 'sly', 'Solyc01g038238.1' => 'sly', 'Solyc02g005560.1' => 'sly', 'Solyc02g005570.1' => 'sly', 'Solyc02g005580.1' => 'sly', 'Solyc02g049100.1' => 'sly', 'Solyc03g046593.1' => 'sly', 'Solyc03g046595.1' => 'sly', 'Solyc03g150119.1' => 'sly', 'Solyc03g150120.1' => 'sly', 'Solyc04g039775.1' => 'sly', 'Solyc06g010130.1' => 'sly', 'Solyc06g010140.1' => 'sly', 'Solyc06g011661.1' => 'sly', 'Solyc06g011664.1' => 'sly', 'Solyc06g011669.1' => 'sly', 'Solyc06g016673.1' => 'sly', 'Solyc06g016677.1' => 'sly', 'Solyc06g016720.3' => 'sly', 'Solyc06g016730.1' => 'sly', 'Solyc07g020795.1' => 'sly', 'Solyc08g016791.1' => 'sly', 'Solyc08g016792.1' => 'sly', 'Solyc08g016794.1' => 'sly', 'Solyc08g016796.1' => 'sly', 'Solyc08g016806.1' => 'sly', 'Solyc08g016807.1' => 'sly', 'Solyc08g150109.1' => 'sly', 'Solyc08g150110.1' => 'sly', 'Solyc08g150111.1' => 'sly', 'Solyc08g150120.1' => 'sly', 'Solyc11g051171.1' => 'sly', 'Solyc11g051172.1' => 'sly', 'Solyc11g051174.1' => 'sly', 'Solyc11g051176.1' => 'sly', 'Solyc12g026360.1' => 'sly', 'Solyc12g082767.1' => 'sly', 'Solyc12g082770.3' => 'sly', 'Solyc12g082790.1' => 'sly', 'Solyc12g082791.1' => 'sly', 'Solyc12g082792.1' => 'sly', 'Solyc12g082794.1' => 'sly', 'Solyc12g082795.1' => 'sly', 'Solyc12g082796.1' => 'sly', 'Sopen00g001130' => 'spe', 'Sopen00g001170' => 'spe', 'Sopen00g001190' => 'spe', 'Sopen00g001200' => 'spe', 'Sopen00g001210' => 'spe', 'Sopen00g001230' => 'spe', 'Sopen00g001240' => 'spe', 'Sopen00g001250' => 'spe', 'Sopen00g001260' => 'spe', 'Sopen00g001280' => 'spe', 'Sopen00g001290' => 'spe', 'Sopen00g001300' => 'spe', 'Sopen00g001310' => 'spe', 'Sopen00g001320' => 'spe', 'Sopen00g001330' => 'spe', 'Sopen00g001340' => 'spe', 'Sopen00g001350' => 'spe', 'Sopen00g001380' => 'spe', 'Sopen00g001390' => 'spe', 'Sopen00g001400' => 'spe', 'Sopen00g001420' => 'spe', 'Sopen00g001470' => 'spe', 'Sopen00g001520' => 'spe', 'Sopen00g001560' => 'spe', 'Sopen00g001580' => 'spe', 'Sopen00g001600' => 'spe', 'Sopen00g001620' => 'spe', 'Sopen00g001640' => 'spe', 'Sopen00g001650' => 'spe', 'Sopen00g001700' => 'spe', 'Sopen00g001780' => 'spe', 'Sopen00g001790' => 'spe', 'Sopen00g001940' => 'spe', 'Sopen00g002010' => 'spe', 'Sopen00g002030' => 'spe', 'Sopen00g002040' => 'spe', 'Sopen00g002070' => 'spe', 'Sopen00g002090' => 'spe', 'Sopen00g002110' => 'spe', 'Sopen00g002130' => 'spe', 'Sopen00g002140' => 'spe', 'Sopen00g002170' => 'spe', 'Sopen00g002180' => 'spe', 'Sopen00g002190' => 'spe', 'Sopen00g002200' => 'spe', 'Sopen00g002350' => 'spe', 'Sopen00g002450' => 'spe', 'Sopen00g002470' => 'spe', 'Sopen00g002480' => 'spe', 'Sopen00g002500' => 'spe', 'Sopen00g002580' => 'spe', 'Sopen00g002600' => 'spe', 'Sopen00g002780' => 'spe', 'Sopen00g002790' => 'spe', 'Sopen00g002830' => 'spe', 'Sopen00g002850' => 'spe', 'Sopen00g002870' => 'spe', 'Sopen00g002920' => 'spe', 'Sopen00g002960' => 'spe', 'Sopen00g003070' => 'spe', 'Sopen00g003080' => 'spe', 'Sopen00g003490' => 'spe', 'Sopen00g003500' => 'spe', 'Sopen00g003510' => 'spe', 'Sopen00g003570' => 'spe', 'Sopen00g003640' => 'spe', 'Sopen00g003650' => 'spe', 'Sopen00g003790' => 'spe', 'Sopen00g003800' => 'spe', 'Sopen00g003820' => 'spe', 'Sopen00g003840' => 'spe', 'Sopen00g003860' => 'spe', 'Sopen00g003880' => 'spe', 'Sopen00g003890' => 'spe', 'Sopen00g003910' => 'spe', 'Sopen00g003970' => 'spe', 'Sopen00g004000' => 'spe', 'Sopen00g004040' => 'spe', 'Sopen00g004160' => 'spe', 'Sopen00g004250' => 'spe', 'Sopen00g004340' => 'spe', 'Sopen00g004380' => 'spe', 'Sopen00g004390' => 'spe', 'Sopen00g004400' => 'spe', 'Sopen00g004410' => 'spe', 'Sopen00g004420' => 'spe', 'Sopen00g004460' => 'spe', 'Sopen00g004470' => 'spe', 'Sopen00g004480' => 'spe', 'Sopen00g004500' => 'spe', 'Sopen00g004510' => 'spe', 'Sopen00g004520' => 'spe', 'Sopen00g004550' => 'spe', 'Sopen00g004710' => 'spe', 'Sopen00g004720' => 'spe', 'Sopen00g004780' => 'spe', 'Sopen00g004850' => 'spe', 'Sopen00g004860' => 'spe', 'Sopen00g004940' => 'spe', 'Sopen00g005170' => 'spe', 'Sopen00g005200' => 'spe', 'Sopen00g005210' => 'spe', 'Sopen00g005280' => 'spe', 'Sopen00g005300' => 'spe', 'Sopen00g005340' => 'spe', 'Sopen00g005400' => 'spe', 'Sopen00g005440' => 'spe', 'Sopen00g005480' => 'spe', 'Sopen00g005510' => 'spe', 'Sopen00g005520' => 'spe', 'Sopen00g005550' => 'spe', 'Sopen00g005570' => 'spe', 'Sopen00g005580' => 'spe', 'Sopen00g005680' => 'spe', 'Sopen00g005710' => 'spe', 'Sopen00g005770' => 'spe', 'Sopen00g005780' => 'spe', 'Sopen00g005900' => 'spe', 'Sopen00g005960' => 'spe', 'Sopen00g005980' => 'spe', 'Sopen00g006010' => 'spe', 'Sopen00g006040' => 'spe', 'Sopen00g006060' => 'spe', 'Sopen00g006080' => 'spe', 'Sopen00g006090' => 'spe', 'Sopen00g006120' => 'spe', 'Sopen00g006160' => 'spe', 'Sopen00g006180' => 'spe', 'Sopen00g006220' => 'spe', 'Sopen00g006240' => 'spe', 'Sopen00g006250' => 'spe', 'Sopen00g006260' => 'spe', 'Sopen00g006290' => 'spe', 'Sopen00g006300' => 'spe', 'Sopen00g006330' => 'spe', 'Sopen00g006370' => 'spe', 'Sopen00g006380' => 'spe', 'Sopen00g006400' => 'spe', 'Sopen00g006410' => 'spe', 'Sopen00g006530' => 'spe', 'Sopen00g006550' => 'spe', 'Sopen00g006570' => 'spe', 'Sopen00g006670' => 'spe', 'Sopen00g006680' => 'spe', 'Sopen00g006700' => 'spe', 'Sopen00g006720' => 'spe', 'Sopen00g006850' => 'spe', 'Sopen00g006860' => 'spe', 'Sopen00g006890' => 'spe', 'Sopen00g006930' 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'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001275', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '492', 'num_species' => '5' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001275' ) ), 'genes' => array( 'CBR_g48875' => 'cbr', 'Nn3g20827' => 'nnu', 'PGSC0003DMG400044391' => 'stu', 'Solyc00g006650.1' => 'sly', 'Solyc00g007920.1' => 'sly', 'Solyc00g007930.1' => 'sly', 'Solyc00g007940.1' => 'sly', 'Solyc00g016590.1' => 'sly', 'Solyc00g500005.1' => 'sly', 'Solyc00g500007.1' => 'sly', 'Solyc00g500008.1' => 'sly', 'Solyc00g500009.1' => 'sly', 'Solyc00g500010.1' => 'sly', 'Solyc00g500012.1' => 'sly', 'Solyc00g500015.1' => 'sly', 'Solyc00g500016.1' => 'sly', 'Solyc00g500017.1' => 'sly', 'Solyc00g500089.1' => 'sly', 'Solyc00g500161.1' => 'sly', 'Solyc00g500162.1' => 'sly', 'Solyc00g500163.1' => 'sly', 'Solyc00g500164.1' => 'sly', 'Solyc00g500165.1' => 'sly', 'Solyc00g500174.1' => 'sly', 'Solyc00g500175.1' => 'sly', 'Solyc00g500176.1' => 'sly', 'Solyc00g500178.1' => 'sly', 'Solyc00g500233.1' => 'sly', 'Solyc00g500265.1' => 'sly', 'Solyc00g500266.1' => 'sly', 'Solyc00g500267.1' => 'sly', 'Solyc00g500288.1' => 'sly', 'Solyc00g500306.1' => 'sly', 'Solyc00g500307.1' => 'sly', 'Solyc00g500368.1' => 'sly', 'Solyc00g500369.1' => 'sly', 'Solyc00g500370.1' => 'sly', 'Solyc00g500371.1' => 'sly', 'Solyc00g500372.1' => 'sly', 'Solyc00g500375.1' => 'sly', 'Solyc00g500382.1' => 'sly', 'Solyc00g500383.1' => 'sly', 'Solyc00g500388.1' => 'sly', 'Solyc00g500389.1' => 'sly', 'Solyc00g500390.1' => 'sly', 'Solyc00g500391.1' => 'sly', 'Solyc00g500392.1' => 'sly', 'Solyc00g500393.1' => 'sly', 'Solyc00g500394.1' => 'sly', 'Solyc00g500396.1' => 'sly', 'Solyc00g500397.1' => 'sly', 'Solyc00g500399.1' => 'sly', 'Solyc00g500400.1' => 'sly', 'Solyc00g500401.1' => 'sly', 'Solyc00g500402.1' => 'sly', 'Solyc00g500403.1' => 'sly', 'Solyc00g500404.1' => 'sly', 'Solyc01g028980.1' => 'sly', 'Solyc01g038230.1' => 'sly', 'Solyc01g038232.1' => 'sly', 'Solyc01g038238.1' => 'sly', 'Solyc02g005560.1' => 'sly', 'Solyc02g005570.1' => 'sly', 'Solyc02g005580.1' => 'sly', 'Solyc02g049100.1' => 'sly', 'Solyc03g046593.1' => 'sly', 'Solyc03g046595.1' => 'sly', 'Solyc03g150119.1' => 'sly', 'Solyc03g150120.1' => 'sly', 'Solyc04g039775.1' => 'sly', 'Solyc06g010130.1' => 'sly', 'Solyc06g010140.1' => 'sly', 'Solyc06g011661.1' => 'sly', 'Solyc06g011664.1' => 'sly', 'Solyc06g011669.1' => 'sly', 'Solyc06g016673.1' => 'sly', 'Solyc06g016677.1' => 'sly', 'Solyc06g016720.3' => 'sly', 'Solyc06g016730.1' => 'sly', 'Solyc07g020795.1' => 'sly', 'Solyc08g016791.1' => 'sly', 'Solyc08g016792.1' => 'sly', 'Solyc08g016794.1' => 'sly', 'Solyc08g016796.1' => 'sly', 'Solyc08g016806.1' => 'sly', 'Solyc08g016807.1' => 'sly', 'Solyc08g150109.1' => 'sly', 'Solyc08g150110.1' => 'sly', 'Solyc08g150111.1' => 'sly', 'Solyc08g150120.1' => 'sly', 'Solyc11g051171.1' => 'sly', 'Solyc11g051172.1' => 'sly', 'Solyc11g051174.1' => 'sly', 'Solyc11g051176.1' => 'sly', 'Solyc12g026360.1' => 'sly', 'Solyc12g082767.1' => 'sly', 'Solyc12g082770.3' => 'sly', 'Solyc12g082790.1' => 'sly', 'Solyc12g082791.1' => 'sly', 'Solyc12g082792.1' => 'sly', 'Solyc12g082794.1' => 'sly', 'Solyc12g082795.1' => 'sly', 'Solyc12g082796.1' => 'sly', 'Sopen00g001130' => 'spe', 'Sopen00g001170' => 'spe', 'Sopen00g001190' => 'spe', 'Sopen00g001200' => 'spe', 'Sopen00g001210' => 'spe', 'Sopen00g001230' => 'spe', 'Sopen00g001240' => 'spe', 'Sopen00g001250' => 'spe', 'Sopen00g001260' => 'spe', 'Sopen00g001280' => 'spe', 'Sopen00g001290' => 'spe', 'Sopen00g001300' => 'spe', 'Sopen00g001310' => 'spe', 'Sopen00g001320' => 'spe', 'Sopen00g001330' => 'spe', 'Sopen00g001340' => 'spe', 'Sopen00g001350' => 'spe', 'Sopen00g001380' => 'spe', 'Sopen00g001390' => 'spe', 'Sopen00g001400' => 'spe', 'Sopen00g001420' => 'spe', 'Sopen00g001470' => 'spe', 'Sopen00g001520' => 'spe', 'Sopen00g001560' => 'spe', 'Sopen00g001580' => 'spe', 'Sopen00g001600' => 'spe', 'Sopen00g001620' => 'spe', 'Sopen00g001640' => 'spe', 'Sopen00g001650' => 'spe', 'Sopen00g001700' => 'spe', 'Sopen00g001780' => 'spe', 'Sopen00g001790' => 'spe', 'Sopen00g001940' => 'spe', 'Sopen00g002010' => 'spe', 'Sopen00g002030' => 'spe', 'Sopen00g002040' => 'spe', 'Sopen00g002070' => 'spe', 'Sopen00g002090' => 'spe', 'Sopen00g002110' => 'spe', 'Sopen00g002130' => 'spe', 'Sopen00g002140' => 'spe', 'Sopen00g002170' => 'spe', 'Sopen00g002180' => 'spe', 'Sopen00g002190' => 'spe', 'Sopen00g002200' => 'spe', 'Sopen00g002350' => 'spe', 'Sopen00g002450' => 'spe', 'Sopen00g002470' => 'spe', 'Sopen00g002480' => 'spe', 'Sopen00g002500' => 'spe', 'Sopen00g002580' => 'spe', 'Sopen00g002600' => 'spe', 'Sopen00g002780' => 'spe', 'Sopen00g002790' => 'spe', 'Sopen00g002830' => 'spe', 'Sopen00g002850' => 'spe', 'Sopen00g002870' => 'spe', 'Sopen00g002920' => 'spe', 'Sopen00g002960' => 'spe', 'Sopen00g003070' => 'spe', 'Sopen00g003080' => 'spe', 'Sopen00g003490' => 'spe', 'Sopen00g003500' => 'spe', 'Sopen00g003510' => 'spe', 'Sopen00g003570' => 'spe', 'Sopen00g003640' => 'spe', 'Sopen00g003650' => 'spe', 'Sopen00g003790' => 'spe', 'Sopen00g003800' => 'spe', 'Sopen00g003820' => 'spe', 'Sopen00g003840' => 'spe', 'Sopen00g003860' => 'spe', 'Sopen00g003880' => 'spe', 'Sopen00g003890' => 'spe', 'Sopen00g003910' => 'spe', 'Sopen00g003970' => 'spe', 'Sopen00g004000' => 'spe', 'Sopen00g004040' => 'spe', 'Sopen00g004160' => 'spe', 'Sopen00g004250' => 'spe', 'Sopen00g004340' => 'spe', 'Sopen00g004380' => 'spe', 'Sopen00g004390' => 'spe', 'Sopen00g004400' => 'spe', 'Sopen00g004410' => 'spe', 'Sopen00g004420' => 'spe', 'Sopen00g004460' => 'spe', 'Sopen00g004470' => 'spe', 'Sopen00g004480' => 'spe', 'Sopen00g004500' => 'spe', 'Sopen00g004510' => 'spe', 'Sopen00g004520' => 'spe', 'Sopen00g004550' => 'spe', 'Sopen00g004710' => 'spe', 'Sopen00g004720' => 'spe', 'Sopen00g004780' => 'spe', 'Sopen00g004850' => 'spe', 'Sopen00g004860' => 'spe', 'Sopen00g004940' => 'spe', 'Sopen00g005170' => 'spe', 'Sopen00g005200' => 'spe', 'Sopen00g005210' => 'spe', 'Sopen00g005280' => 'spe', 'Sopen00g005300' => 'spe', 'Sopen00g005340' => 'spe', 'Sopen00g005400' => 'spe', 'Sopen00g005440' => 'spe', 'Sopen00g005480' => 'spe', 'Sopen00g005510' => 'spe', 'Sopen00g005520' => 'spe', 'Sopen00g005550' => 'spe', 'Sopen00g005570' => 'spe', 'Sopen00g005580' => 'spe', 'Sopen00g005680' => 'spe', 'Sopen00g005710' => 'spe', 'Sopen00g005770' => 'spe', 'Sopen00g005780' => 'spe', 'Sopen00g005900' => 'spe', 'Sopen00g005960' => 'spe', 'Sopen00g005980' => 'spe', 'Sopen00g006010' => 'spe', 'Sopen00g006040' => 'spe', 'Sopen00g006060' => 'spe', 'Sopen00g006080' => 'spe', 'Sopen00g006090' => 'spe', 'Sopen00g006120' => 'spe', 'Sopen00g006160' => 'spe', 'Sopen00g006180' => 'spe', 'Sopen00g006220' => 'spe', 'Sopen00g006240' => 'spe', 'Sopen00g006250' => 'spe', 'Sopen00g006260' => 'spe', 'Sopen00g006290' => 'spe', 'Sopen00g006300' => 'spe', 'Sopen00g006330' => 'spe', 'Sopen00g006370' => 'spe', 'Sopen00g006380' => 'spe', 'Sopen00g006400' => 'spe', 'Sopen00g006410' => 'spe', 'Sopen00g006530' => 'spe', 'Sopen00g006550' => 'spe', 'Sopen00g006570' => 'spe', 'Sopen00g006670' => 'spe', 'Sopen00g006680' => 'spe', 'Sopen00g006700' => 'spe', 'Sopen00g006720' => 'spe', 'Sopen00g006850' => 'spe', 'Sopen00g006860' => 'spe', 'Sopen00g006890' => 'spe', 'Sopen00g006930' => 'spe', 'Sopen00g006970' => 'spe', 'Sopen00g006980' => 'spe', 'Sopen00g007020' => 'spe', 'Sopen00g007160' => 'spe', 'Sopen00g007170' => 'spe', 'Sopen00g007240' => 'spe', 'Sopen00g007250' => 'spe', 'Sopen00g007270' => 'spe', 'Sopen00g007280' => 'spe', 'Sopen00g007340' => 'spe', 'Sopen00g007390' => 'spe', 'Sopen00g007470' => 'spe', 'Sopen00g007480' => 'spe', 'Sopen00g007510' => 'spe', 'Sopen00g007550' => 'spe', 'Sopen00g007570' => 'spe', 'Sopen00g007580' => 'spe', 'Sopen00g007590' => 'spe', 'Sopen00g007610' => 'spe', 'Sopen00g007640' => 'spe', 'Sopen00g007750' => 'spe', 'Sopen00g007760' => 'spe', 'Sopen00g007780' => 'spe', 'Sopen00g007900' => 'spe', 'Sopen00g008020' => 'spe', 'Sopen00g008060' => 'spe', 'Sopen00g008150' => 'spe', 'Sopen00g008210' => 'spe', 'Sopen00g008220' => 'spe', 'Sopen00g008310' => 'spe', 'Sopen00g008320' => 'spe', 'Sopen00g008340' => 'spe', 'Sopen00g008410' => 'spe', 'Sopen00g008490' => 'spe', 'Sopen00g008540' => 'spe', 'Sopen00g008590' => 'spe', 'Sopen00g008650' => 'spe', 'Sopen00g008660' => 'spe', 'Sopen00g008770' => 'spe', 'Sopen00g008790' => 'spe', 'Sopen00g008850' => 'spe', 'Sopen00g008860' => 'spe', 'Sopen00g008900' => 'spe', 'Sopen00g009030' => 'spe', 'Sopen00g009070' => 'spe', 'Sopen00g009110' => 'spe', 'Sopen00g009160' => 'spe', 'Sopen00g009210' => 'spe', 'Sopen00g009300' => 'spe', 'Sopen00g009440' => 'spe', 'Sopen00g009480' => 'spe', 'Sopen00g009520' => 'spe', 'Sopen00g009680' => 'spe', 'Sopen00g009780' => 'spe', 'Sopen00g009850' => 'spe', 'Sopen00g009890' => 'spe', 'Sopen00g009920' => 'spe', 'Sopen00g010100' => 'spe', 'Sopen00g010160' => 'spe', 'Sopen00g010170' => 'spe', 'Sopen00g010240' => 'spe', 'Sopen00g010310' => 'spe', 'Sopen00g010320' => 'spe', 'Sopen00g010360' => 'spe', 'Sopen00g010530' => 'spe', 'Sopen00g010540' => 'spe', 'Sopen00g010590' => 'spe', 'Sopen00g010620' => 'spe', 'Sopen00g010640' => 'spe', 'Sopen00g010650' => 'spe', 'Sopen00g010670' => 'spe', 'Sopen00g010680' => 'spe', 'Sopen00g010730' => 'spe', 'Sopen00g010750' => 'spe', 'Sopen00g010780' => 'spe', 'Sopen00g010820' => 'spe', 'Sopen00g010840' => 'spe', 'Sopen00g010950' => 'spe', 'Sopen00g010960' => 'spe', 'Sopen00g010980' => 'spe', 'Sopen00g011010' => 'spe', 'Sopen00g011060' => 'spe', 'Sopen00g011070' => 'spe', 'Sopen00g011100' => 'spe', 'Sopen00g011120' => 'spe', 'Sopen00g011140' => 'spe', 'Sopen00g011170' => 'spe', 'Sopen00g011200' => 'spe', 'Sopen00g011220' => 'spe', 'Sopen00g011270' => 'spe', 'Sopen00g011280' => 'spe', 'Sopen00g011300' => 'spe', 'Sopen00g011310' => 'spe', 'Sopen00g011400' => 'spe', 'Sopen00g011460' => 'spe', 'Sopen00g011490' => 'spe', 'Sopen00g011510' => 'spe', 'Sopen00g011520' => 'spe', 'Sopen00g011540' => 'spe', 'Sopen00g011570' => 'spe', 'Sopen00g011610' => 'spe', 'Sopen00g011740' => 'spe', 'Sopen00g011860' => 'spe', 'Sopen00g011870' => 'spe', 'Sopen00g011890' => 'spe', 'Sopen00g011900' => 'spe', 'Sopen00g011920' => 'spe', 'Sopen00g011950' => 'spe', 'Sopen00g011960' => 'spe', 'Sopen00g011980' => 'spe', 'Sopen00g012060' => 'spe', 'Sopen00g012090' => 'spe', 'Sopen00g012110' => 'spe', 'Sopen00g012130' => 'spe', 'Sopen00g012140' => 'spe', 'Sopen00g012150' => 'spe', 'Sopen00g012170' => 'spe', 'Sopen00g012180' => 'spe', 'Sopen00g012200' => 'spe', 'Sopen00g012210' => 'spe', 'Sopen00g012240' => 'spe', 'Sopen00g012270' => 'spe', 'Sopen00g012280' => 'spe', 'Sopen00g012290' => 'spe', 'Sopen00g012300' => 'spe', 'Sopen00g012320' => 'spe', 'Sopen00g012360' => 'spe', 'Sopen00g012380' => 'spe', 'Sopen00g012430' => 'spe', 'Sopen00g012440' => 'spe', 'Sopen00g012450' => 'spe', 'Sopen00g012460' => 'spe', 'Sopen00g012470' => 'spe', 'Sopen00g012480' => 'spe', 'Sopen00g012530' => 'spe', 'Sopen00g012640' => 'spe', 'Sopen00g012800' => 'spe', 'Sopen00g012900' => 'spe', 'Sopen00g012920' => 'spe', 'Sopen00g013220' => 'spe', 'Sopen00g013240' => 'spe', 'Sopen00g013250' => 'spe', 'Sopen00g013260' => 'spe', 'Sopen00g013310' => 'spe', 'Sopen00g013560' => 'spe', 'Sopen00g013640' => 'spe', 'Sopen00g013670' => 'spe', 'Sopen00g013710' => 'spe', 'Sopen00g013740' => 'spe', 'Sopen00g014040' => 'spe', 'Sopen00g014140' => 'spe', 'Sopen00g014250' => 'spe', 'Sopen00g014300' => 'spe', 'Sopen00g014310' => 'spe', 'Sopen00g014320' => 'spe', 'Sopen00g014330' => 'spe', 'Sopen00g014340' => 'spe', 'Sopen00g014370' => 'spe', 'Sopen00g014380' => 'spe', 'Sopen01g017930' => 'spe', 'Sopen01g017940' => 'spe', 'Sopen02g002410' => 'spe', 'Sopen02g002440' => 'spe', 'Sopen02g002460' => 'spe', 'Sopen02g002470' => 'spe', 'Sopen02g002490' => 'spe', 'Sopen02g002660' => 'spe', 'Sopen02g002670' => 'spe', 'Sopen02g002690' => 'spe', 'Sopen02g005030' => 'spe', 'Sopen02g005060' => 'spe', 'Sopen02g005580' => 'spe', 'Sopen02g005600' => 'spe', 'Sopen02g005620' => 'spe', 'Sopen02g005640' => 'spe', 'Sopen02g005650' => 'spe', 'Sopen02g006940' => 'spe', 'Sopen02g006960' => 'spe', 'Sopen02g006990' => 'spe', 'Sopen02g007010' => 'spe', 'Sopen02g007080' => 'spe', 'Sopen02g007220' => 'spe', 'Sopen02g008120' => 'spe', 'Sopen02g008130' => 'spe', 'Sopen02g008170' => 'spe', 'Sopen02g008180' => 'spe', 'Sopen02g008210' => 'spe', 'Sopen02g008320' => 'spe', 'Sopen03g019040' => 'spe', 'Sopen03g019050' => 'spe', 'Sopen03g019060' => 'spe', 'Sopen03g019070' => 'spe', 'Sopen04g010220' => 'spe', 'Sopen04g010230' => 'spe', 'Sopen04g010240' => 'spe', 'Sopen04g010270' => 'spe', 'Sopen04g010280' => 'spe', 'Sopen04g010300' => 'spe', 'Sopen04g016160' => 'spe', 'Sopen04g024070' => 'spe', 'Sopen05g022490' => 'spe', 'Sopen06g004910' => 'spe', 'Sopen06g004940' => 'spe', 'Sopen06g004950' => 'spe', 'Sopen06g007060' => 'spe', 'Sopen06g007070' => 'spe', 'Sopen06g007080' => 'spe', 'Sopen06g007090' => 'spe', 'Sopen06g007130' => 'spe', 'Sopen06g007180' => 'spe', 'Sopen06g007530' => 'spe', 'Sopen06g009240' => 'spe', 'Sopen06g009260' => 'spe', 'Sopen06g009280' => 'spe', 'Sopen06g016680' => 'spe', 'Sopen06g016700' => 'spe', 'Sopen07g009420' => 'spe', 'Sopen07g009500' => 'spe', 'Sopen08g007410' => 'spe', 'Sopen09g010080' => 'spe', 'Sopen09g010100' => 'spe', 'Sopen12g011570' => 'spe', 'Sopen12g012170' => 'spe', 'Sopen12g012180' => 'spe', 'Sopen12g012190' => 'spe', 'Sopen12g012200' => 'spe', 'Sopen12g012210' => 'spe', 'Sopen12g012230' => 'spe', 'Sopen12g012240' => 'spe', 'Sopen12g012260' => 'spe', 'Sopen12g012270' => 'spe', 'Sopen12g012280' => 'spe', 'Sopen12g012290' => 'spe', 'Sopen12g012300' => 'spe', 'Sopen12g012310' => 'spe', 'Sopen12g012980' => 'spe', 'Sopen12g015550' => 'spe', 'Sopen12g024800' => 'spe', 'Sopen12g025480' => 'spe' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001275' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001275' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001275' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001275' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151