Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001254', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '498', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p31550' => 'bna', 'A01p31560' => 'bna', 'A03p43290' => 'bna', 'A07p08890' => 'bna', 'A07p08980' => 'bna', 'A07p08990' => 'bna', 'Aa31LG8G9970' => 'aar', 'Aa31LG8G9980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.418' => 'aag', 'Actinidia35810' => 'ach', 'Ah.04g155380' => 'amhyb', 'Ah.13g072320' => 'amhyb', 'AL242U10010' => 'aly', 'AL242U10030' => 'aly', 'AL3G38120' => 'aly', 'AL3G38170' => 'aly', 'AL3G38190' => 'aly', 'Aqoxy2G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08UV73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M4LDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56Z1DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I33M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5I47GQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZS5X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60TT6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2G91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WEA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BHDE6S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AW8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ3JB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I255AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2BZ41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTU25K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2HI9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4GAS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNBV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6IN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX4IN3' => 'arhy', 'AT3G23460' => 'ath', 'AT3G23470' => 'ath', 'AT3G23480' => 'ath', 'AT3G23510' => 'ath', 'AT3G23530' => 'ath', 'ATR0736G203' => 'atr', 'Atru.chr4.1938' => 'acertr', 'Atru.chr4.1940' => 'acertr', 'Atru.chr6.2805' => 'acertr', 'AUR62002177' => 'cqu', 'AUR62015532' => 'cqu', 'AUR62016161' => 'cqu', 'AUR62035075' => 'cqu', 'BcaB03g14622' => 'bca', 'BcaB04g20446' => 'bca', 'BcaB06g26491' => 'bca', 'BcaB06g26493' => 'bca', 'BcaB06g26502' => 'bca', 'BcaC01g03370' => 'bca', 'BcaC01g03804' => 'bca', 'BcaC06g35528' => 'bca', 'BcaC06g35529' => 'bca', 'BcaC06g35537' => 'bca', 'BcaC09g49303' => 'bca', 'BolC1t03986H' => 'bol', 'BolC3t17123H' => 'bol', 'BolC3t17584H' => 'bol', 'BolC6t37463H' => 'bol', 'BolC7t41867H' => 'bol', 'BolC7t41884H' => 'bol', 'BolC7t41886H' => 'bol', 'BolC7t41887H' => 'bol', 'BolC7t41888H' => 'bol', 'BraA01t03285Z' => 'bra', 'BraA01t03286Z' => 'bra', 'BraA03t13468Z' => 'bra', 'BraA07t28679Z' => 'bra', 'BraA07t28688Z' => 'bra', 'BraA07t28689Z' => 'bra', 'BraA07t28692Z' => 'bra', 'BraA07t28694Z' => 'bra', 'C01p40250' => 'bna', 'C01p40290' => 'bna', 'C01p40320' => 'bna', 'C03p48450' => 'bna', 'C03p53200' => 'bna', 'C07p13720' => 'bna', 'C07p13820' => 'bna', 'C07p13830' => 'bna', 'C07p13850' => 'bna', 'C07p13860' => 'bna', 'CAN.G135.73' => 'can', 'CAN.G1801.3' => 'can', 'CAN.G220.58' => 'can', 'CAN.G220.59' => 'can', 'CAN.G220.60' => 'can', 'CAN.G220.61' => 'can', 'CAN.G220.62' => 'can', 'CAN.G220.63' => 'can', 'CAN.G220.64' => 'can', 'CAN.G220.65' => 'can', 'CAN.G220.92' => 'can', 'CAN.G524.36' => 'can', 'CAN.G588.66' => 'can', 'CAN.G674.11' => 'can', 'CAN.G681.64' => 'can', 'CAN.G681.65' => 'can', 'CAN.G681.66' => 'can', 'CAN.G681.68' => 'can', 'CAN.G681.69' => 'can', 'CANSAT21G0944' => 'cansat', 'CANSAT21G1419' => 'cansat', 'CANSAT25G3284' => 'cansat', 'CANSAT78G1771' => 'cansat', 'CARHR099420' => 'chi', 'CARHR099430' => 'chi', 'Carub.0003s2371' => 'cru', 'Carub.0003s2373' => 'cru', 'Ca_09809_v3' => 'car', 'Ca_11937_v3' => 'car', 'Ca_28724_v3' => 'car', 'Ca_30490_v3' => 'car', 'CBR_g31184' => 'cbr', 'Cc03_g05980' => 'ccan', 'CDE08G0370' => 'cde', 'CDE08G1432' => 'cde', 'CDE08G1481' => 'cde', 'Cfa014764' => 'cfa', 'Cfa014765' => 'cfa', 'Cfa025193' => 'cfa', 'Cfa025468' => 'cfa', 'Ciclev10004346m.g' => 'ccl', 'Ciclev10005536m.g' => 'ccl', 'Ciclev10005710m.g' => 'ccl', 'Ciclev10005727m.g' => 'ccl', 'Ciclev10007034m.g' => 'ccl', 'Ciclev10030464m.g' => 'ccl', 'CiPaw.01G179700' => 'cil', 'CiPaw.01G179800' => 'cil', 'CiPaw.01G180000' => 'cil', 'CiPaw.01G180100' => 'cil', 'CiPaw.01G180200' => 'cil', 'CiPaw.04G074600' => 'cil', 'CiPaw.11G113200' => 'cil', 'CiPaw.12G016000' => 'cil', 'CiPaw.14G041800' => 'cil', 'CiPaw.14G090000' => 'cil', 'ClCG00G005870' => 'cla', 'ClCG06G007160' => 'cla', 'ClCG06G007170' => 'cla', 'ClCG06G007180' => 'cla', 'ClCG07G007110' => 'cla', 'ClCG07G007160' => 'cla', 'ClCG07G007170' => 'cla', 'ClCG09G014600' => 'cla', 'COL.COLO4_00227' => 'col', 'COL.COLO4_15937' => 'col', 'COL.COLO4_15940' => 'col', 'COL.COLO4_15941' => 'col', 'COL.COLO4_15943' => 'col', 'COL.COLO4_20821' => 'col', 'COL.COLO4_25895' => 'col', 'COL.COLO4_25896' => 'col', 'COL.COLO4_25897' => 'col', 'COL.COLO4_25898' => 'col', 'COL.COLO4_25899' => 'col', 'COL.COLO4_25900' => 'col', 'COL.COLO4_25901' => 'col', 'COL.COLO4_25903' => 'col', 'COL.COLO4_30350' => 'col', 'Cpa.g.sc1584.1' => 'cpa', 'Cpa.g.sc44.17' => 'cpa', 'Cpa.g.sc44.18' => 'cpa', 'Cre06.g281250' => 'cre', 'CsaV3_2G012540' => 'csa', 'CsaV3_2G012550' => 'csa', 'CsaV3_2G012560' => 'csa', 'CSS0032050' => 'camsi', 'CSS0047456' => 'camsi', 'DCAR_030759' => 'dca', 'Dinv29819' => 'din', 'Duzib052G1047' => 'dzi', 'Duzib151G0707' => 'dzi', 'Duzib212G0708' => 'dzi', 'Duzib212G0719' => 'dzi', 'EL10Ac3g04936' => 'bvu', 'EL10Ac3g04960' => 'bvu', 'EL10Ac3g04961' => 'bvu', 'EL10Ac3g04963' => 'bvu', 'EL10Ac3g04964' => 'bvu', 'Eucgr.H02968' => 'egr', 'Eucgr.H02969' => 'egr', 'Eucgr.H02971' => 'egr', 'Eucgr.H02972' => 'egr', 'Eucgr.H02975' => 'egr', 'Eucgr.H02976' => 'egr', 'FAN01G2895' => 'fan', 'FAN01G2911' => 'fan', 'FAN06G0180' => 'fan', 'FAN06G1053' => 'fan', 'FAN06G1280' => 'fan', 'FAN06G2889' => 'fan', 'FAN06G4487' => 'fan', 'FAN12G0280' => 'fan', 'FAN12G3384' => 'fan', 'FAN17G0060' => 'fan', 'FAN17G3117' => 'fan', 'FAN21G3292' => 'fan', 'FAN22G1285' => 'fan', 'FAN22G2004' => 'fan', 'FvH4_4g04310' => 'fve', 'FvH4_4g04360' => 'fve', 'FvH4_4g04361' => 'fve', 'FvH4_7g18110' => 'fve', 'FvH4_7g18140' => 'fve', 'FvH4_7g18480' => 'fve', 'FvH4_7g18481' => 'fve', 'Glyma.10G189400' => 'gma', 'Glyma.20G201400' => 'gma', 'Gohir.A01G025200' => 'ghi', 'Gohir.A01G025600' => 'ghi', 'Gohir.A02G041801' => 'ghi', 'Gohir.A02G041802' => 'ghi', 'Gohir.A02G042000' => 'ghi', 'Gohir.A09G228050' => 'ghi', 'Gohir.A10G159666' => 'ghi', 'Gohir.D01G023400' => 'ghi', 'Gohir.D01G023409' => 'ghi', 'Gohir.D01G077101' => 'ghi', 'Gohir.D02G047550' => 'ghi', 'Gohir.D02G047600' => 'ghi', 'Gohir.D03G094750' => 'ghi', 'Gohir.D09G229100' => 'ghi', 'Gohir.D10G084600' => 'ghi', 'Gohir.D10G211900' => 'ghi', 'Gohir.D13G167111' => 'ghi', 'Gorai.002G025800' => 'gra', 'Gorai.002G026100' => 'gra', 'Gorai.005G052800' => 'gra', 'Gorai.005G052900' => 'gra', 'Gorai.006G251800' => 'gra', 'Gorai.011G092100' => 'gra', 'GSVIVG01027886001' => 'vvi', 'GSVIVG01027890001' => 'vvi', 'HanXRQChr02g0059351' => 'han', 'HanXRQChr12g0361741' => 'han', 'HanXRQChr12g0362451' => 'han', 'HanXRQChr12g0362471' => 'han', 'HanXRQChr12g0362501' => 'han', 'HanXRQChr12g0362671' => 'han', 'HanXRQChr12g0362681' => 'han', 'HanXRQChr12g0362691' => 'han', 'Haze_11439' => 'cav', 'Haze_11441' => 'cav', 'Haze_11442' => 'cav', 'Hma1.2p1_0267F.1_g107070' => 'hma', 'Hma1.2p1_0267F.1_g107080' => 'hma', 'Hma1.2p1_0385F.1_g141425' => 'hma', 'Hma1.2p1_0385F.1_g141430' => 'hma', 'Hma1.2p1_3458F.1_g336110' => 'hma', 'HPP92_009056' => 'vpl', 'HPP92_028141' => 'vpl', 'Hund03062' => 'sun', 'Hund03063' => 'sun', 'Hund03064' => 'sun', 'Hund03065' => 'sun', 'Hund03066' => 'sun', 'Hund03067' => 'sun', 'Hund03069' => 'sun', 'Hund03070' => 'sun', 'Hund03071' => 'sun', 'Hund03072' => 'sun', 'Hund03073' => 'sun', 'Hund03074' => 'sun', 'Hund03075' => 'sun', 'Hund03538' => 'sun', 'Lalb_Chr06g0169441' => 'lal', 'Lalb_Chr06g0169451' => 'lal', 'Lalb_Chr21g0312441' => 'lal', 'Lj5g0020800' => 'lja', 'Lj6C623G11' => 'lonja', 'Lj6C623T7' => 'lonja', 'Lsat_1_v5_gn_6_54580' => 'lsa', 'Lsat_1_v5_gn_6_54640' => 'lsa', 'Lsat_1_v5_gn_6_54780' => 'lsa', 'Lsat_1_v5_gn_6_56761' => 'lsa', 'Lsat_1_v5_gn_6_56781' => 'lsa', 'Lsat_1_v5_gn_6_56941' => 'lsa', 'Lsat_1_v5_gn_6_68821' => 'lsa', 'Manes.03G160700' => 'mes', 'Manes.03G160800' => 'mes', 'Manes.03G160850' => 'mes', 'Manes.03G160900' => 'mes', 'Manes.03G161000' => 'mes', 'Manes.03G161100' => 'mes', 'Manes.03G161200' => 'mes', 'Manes.03G161350' => 'mes', 'Manes.12G059300' => 'mes', 'Manes.15G043966' => 'mes', 'Mapoly0062s0039' => 'mpo', 'Mapoly1664s0001' => 'mpo', 'Mapoly3054s0001' => 'mpo', 'Mapoly4131s0001' => 'mpo', 'MBI07_g11125_MAGBIO' => 'mbi', 'MBI07_g14511_MAGBIO' => 'mbi', 'MBI07_g20243_MAGBIO' => 'mbi', 'MCO05G694' => 'mco', 'MD16G1224400' => 'mdo', 'Medtr1g044520' => 'mtr', 'Medtr1g073700' => 'mtr', 'MELO3C000522.2' => 'cme', 'MELO3C001398.2' => 'cme', 'MELO3C023030.2' => 'cme', 'MELO3C023031.2' => 'cme', 'MELO3C023032.2' => 'cme', 'MELO3C027187.2' => 'cme', 'MELO3C027751.2' => 'cme', 'MELO3C031245.2' => 'cme', 'Migut.G00492' => 'egut', 'Migut.N00291' => 'egut', 'MSTRG.24666' => 'ama', 'MSTRG.4158' => 'ama', 'Nitab4.5_0000049g0080' => 'nta', 'Nitab4.5_0000474g0040' => 'nta', 'Nitab4.5_0000483g0040' => 'nta', 'Nitab4.5_0001051g0160' => 'nta', 'Nitab4.5_0001425g0010' => 'nta', 'Nitab4.5_0001425g0020' => 'nta', 'Nitab4.5_0001425g0070' => 'nta', 'Nitab4.5_0001470g0020' => 'nta', 'Nitab4.5_0001470g0030' => 'nta', 'Nitab4.5_0001470g0040' => 'nta', 'Nitab4.5_0001470g0050' => 'nta', 'Nitab4.5_0001470g0060' => 'nta', 'Nitab4.5_0001470g0070' => 'nta', 'Nitab4.5_0001470g0080' => 'nta', 'Nitab4.5_0002293g0020' => 'nta', 'Nitab4.5_0002709g0090' => 'nta', 'Nitab4.5_0004167g0040' => 'nta', 'Nitab4.5_0005604g0010' => 'nta', 'Nitab4.5_0006069g0030' => 'nta', 'Nitab4.5_0009537g0010' => 'nta', 'Nitab4.5_0016872g0010' => 'nta', 'Nitab4.5_0019395g0010' => 'nta', 'Nitab4.5_0026646g0010' => 'nta', 'Nn1g02911' => 'nnu', 'Oeu055250.1' => 'oeu', 'Oeu055251.1' => 'oeu', 'Os07g0474600' => 'osa', 'Os12g0267100' => 'osa', 'Os12g0267200' => 'osa', 'Peaxi162Scf00013g00340' => 'pax', 'Peaxi162Scf00033g00261' => 'pax', 'Peaxi162Scf00033g00275' => 'pax', 'Peaxi162Scf00033g02610' => 'pax', 'Peaxi162Scf00033g02611' => 'pax', 'Peaxi162Scf00169g00317' => 'pax', 'Peaxi162Scf00169g00318' => 'pax', 'Peaxi162Scf00266g01010' => 'pax', 'Peaxi162Scf00300g00058' => 'pax', 'Peaxi162Scf00300g00518' => 'pax', 'Peaxi162Scf00321g00036' => 'pax', 'Peaxi162Scf00817g00119' => 'pax', 'Peaxi162Scf00817g00120' => 'pax', 'Peaxi162Scf01082g00025' => 'pax', 'Peaxi162Scf01082g00028' => 'pax', 'Peaxi162Scf01248g00314' => 'pax', 'Peaxi162Scf01248g00420' => 'pax', 'Peaxi162Scf01248g00421' => 'pax', 'PGR004G2782' => 'pgr', 'PGSC0003DMG400007263' => 'stu', 'PGSC0003DMG400007265' => 'stu', 'PGSC0003DMG400016834' => 'stu', 'PGSC0003DMG400017202' => 'stu', 'Phvul.008G158130' => 'pvu', 'Potri.008G170300' => 'ptr', 'Potri.010G067567' => 'ptr', 'Potri.010G067600' => 'ptr', 'Potri.010G067700' => 'ptr', 'Potri.010G067800' => 'ptr', 'Potri.010G067900' => 'ptr', 'Pp3c1_41090' => 'ppa', 'PRCOL_00005990' => 'pco', 'Prupe.1G045800' => 'ppe', 'Psat1g031880' => 'psa', 'Psat6g133480' => 'psa', 'PSO017G4741' => 'pso', 'PSO017G5938' => 'pso', 'PSO063G7051' => 'pso', 'QL06p020190' => 'qlo', 'QL06p020465' => 'qlo', 'QL06p020509' => 'qlo', 'QL06p020553' => 'qlo', 'QL06p020653' => 'qlo', 'QL06p020667' => 'qlo', 'RcHm_v2.0_Chr1g0325031' => 'rch', 'RcHm_v2.0_Chr1g0362281' => 'rch', 'RcHm_v2.0_Chr4g0390341' => 'rch', 'RcHm_v2.0_Chr4g0394761' => 'rch', 'RcHm_v2.0_Chr4g0394801' => 'rch', 'RcHm_v2.0_Chr4g0394871' => 'rch', 'RcHm_v2.0_Chr4g0394921' => 'rch', 'RcHm_v2.0_Chr4g0394931' => 'rch', 'RcHm_v2.0_Chr4g0394941' => 'rch', 'RcHm_v2.0_Chr4g0404311' => 'rch', 'RcHm_v2.0_Chr6g0258991' => 'rch', 'RcHm_v2.0_Chr6g0273911' => 'rch', 'RcHm_v2.0_Chr6g0288341' => 'rch', 'Rhsim04G0173900' => 'rsi', 'Rhsim04G0174000' => 'rsi', 'Rhsim04G0174200' => 'rsi', 'Rhsim04G0174300' => 'rsi', 'Sabra08G0130000' => 'sbr', 'Sabra08G0130100' => 'sbr', 'Sabra08G0130200' => 'sbr', 'Sabra10G0039500' => 'sbr', 'Sabra10G0039600' => 'sbr', 'Sabra10G0039700' => 'sbr', 'Sabra10G0039900' => 'sbr', 'SalBow1G2701' => 'sbo', 'SalBow3G4332' => 'sbo', 'SalBow8G0297' => 'sbo', 'SalBow8G1010' => 'sbo', 'SalBow8G1245' => 'sbo', 'SalBow8G2494' => 'sbo', 'SalBow8G2922' => 'sbo', 'SalBow8G3176' => 'sbo', 'SalBow8G3913' => 'sbo', 'SalBow8G4116' => 'sbo', 'SalBow8G4602' => 'sbo', 'SalBow8G5067' => 'sbo', 'Sc13g0005970' => 'sci', 'Sc13g0006090' => 'sci', 'Sc13g0006100' => 'sci', 'Sc13g0006110' => 'sci', 'Sed0000108' => 'sed', 'Sed0007860' => 'sed', 'Sed0021154' => 'sed', 'SEGI_06360' => 'sgi', 'SEGI_07006' => 'sgi', 'SEGI_11340' => 'sgi', 'SEGI_14689' => 'sgi', 'SEGI_20730' => 'sgi', 'SEGI_23794' => 'sgi', 'SEGI_32890' => 'sgi', 'SEGI_38188' => 'sgi', 'SGA_v2.0_scaffold31G12645' => 'sas', 'SGA_v2.0_scaffold67G22708' => 'sas', 'SMO356G0103' => 'smo', 'Solyc03g045140.4' => 'sly', 'Solyc03g045150.1' => 'sly', 'Solyc04g056440.3' => 'sly', 'Solyc04g056450.4' => 'sly', 'Solyc07g150128.1' => 'sly', 'Solyc09g090500.3' => 'sly', 'Solyc09g090510.3' => 'sly', 'Sopen03g009610' => 'spe', 'Sopen04g025330' => 'spe', 'Sopen04g025340' => 'spe', 'Sopen09g033420' => 'spe', 'Sopen09g033430' => 'spe', 'Sopen09g033440' => 'spe', 'Sp3g21120' => 'spa', 'Sp3g21130' => 'spa', 'Sp3g21140' => 'spa', 'Sp3g21180' => 'spa', 'SpUn0047_0010' => 'spa', 'SpUn0047_0020' => 'spa', 'TAR362G0672' => 'tar', 'THA.LOC104804765' => 'tha', 'THA.LOC104806424' => 'tha', 'THA.LOC104808649' => 'tha', 'THA.LOC104808651' => 'tha', 'THA.LOC104808652' => 'tha', 'THA.LOC104808653' => 'tha', 'Thecc.04G260700' => 'tca', 'Thecc.04G260800' => 'tca', 'Thecc.04G260900' => 'tca', 'Thecc.04G261000' => 'tca', 'Thecc.04G261200' => 'tca', 'Thecc.04G261300' => 'tca', 'Thecc.04G261400' => 'tca', 'Thecc.04G261500' => 'tca', 'Thecc.04G262900' => 'tca', 'Thhalv10020039m.g' => 'esa', 'Thhalv10020040m.g' => 'esa', 'Thhalv10020049m.g' => 'esa', 'Thhalv10022172m.g' => 'esa', 'TPR.G28756' => 'tpr', 'TPR.G28852' => 'tpr', 'TWI09G0985' => 'twi', 'TWI09G1386' => 'twi', 'unitig_749.g13515' => 'ugi', 'vmacro08534' => 'vma', 'vmacro08535' => 'vma', 'vmacro08536' => 'vma', 'VMungo0720G1851' => 'vmu', 'Zm00001eb041970' => 'zma', 'Zm00001eb102480' => 'zma', 'Zm00001eb164950' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001254', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001254' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001254', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '498', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001254' ) ), 'genes' => array( 'A01p31550' => 'bna', 'A01p31560' => 'bna', 'A03p43290' => 'bna', 'A07p08890' => 'bna', 'A07p08980' => 'bna', 'A07p08990' => 'bna', 'Aa31LG8G9970' => 'aar', 'Aa31LG8G9980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.418' => 'aag', 'Actinidia35810' => 'ach', 'Ah.04g155380' => 'amhyb', 'Ah.13g072320' => 'amhyb', 'AL242U10010' => 'aly', 'AL242U10030' => 'aly', 'AL3G38120' => 'aly', 'AL3G38170' => 'aly', 'AL3G38190' => 'aly', 'Aqoxy2G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08UV73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M4LDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56Z1DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I33M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5I47GQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZS5X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60TT6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2G91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WEA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BHDE6S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AW8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ3JB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I255AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2BZ41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTU25K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2HI9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4GAS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNBV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6IN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX4IN3' => 'arhy', 'AT3G23460' => 'ath', 'AT3G23470' => 'ath', 'AT3G23480' => 'ath', 'AT3G23510' => 'ath', 'AT3G23530' => 'ath', 'ATR0736G203' => 'atr', 'Atru.chr4.1938' => 'acertr', 'Atru.chr4.1940' => 'acertr', 'Atru.chr6.2805' => 'acertr', 'AUR62002177' => 'cqu', 'AUR62015532' => 'cqu', 'AUR62016161' => 'cqu', 'AUR62035075' => 'cqu', 'BcaB03g14622' => 'bca', 'BcaB04g20446' => 'bca', 'BcaB06g26491' => 'bca', 'BcaB06g26493' => 'bca', 'BcaB06g26502' => 'bca', 'BcaC01g03370' => 'bca', 'BcaC01g03804' => 'bca', 'BcaC06g35528' => 'bca', 'BcaC06g35529' => 'bca', 'BcaC06g35537' => 'bca', 'BcaC09g49303' => 'bca', 'BolC1t03986H' => 'bol', 'BolC3t17123H' => 'bol', 'BolC3t17584H' => 'bol', 'BolC6t37463H' => 'bol', 'BolC7t41867H' => 'bol', 'BolC7t41884H' => 'bol', 'BolC7t41886H' => 'bol', 'BolC7t41887H' => 'bol', 'BolC7t41888H' => 'bol', 'BraA01t03285Z' => 'bra', 'BraA01t03286Z' => 'bra', 'BraA03t13468Z' => 'bra', 'BraA07t28679Z' => 'bra', 'BraA07t28688Z' => 'bra', 'BraA07t28689Z' => 'bra', 'BraA07t28692Z' => 'bra', 'BraA07t28694Z' => 'bra', 'C01p40250' => 'bna', 'C01p40290' => 'bna', 'C01p40320' => 'bna', 'C03p48450' => 'bna', 'C03p53200' => 'bna', 'C07p13720' => 'bna', 'C07p13820' => 'bna', 'C07p13830' => 'bna', 'C07p13850' => 'bna', 'C07p13860' => 'bna', 'CAN.G135.73' => 'can', 'CAN.G1801.3' => 'can', 'CAN.G220.58' => 'can', 'CAN.G220.59' => 'can', 'CAN.G220.60' => 'can', 'CAN.G220.61' => 'can', 'CAN.G220.62' => 'can', 'CAN.G220.63' => 'can', 'CAN.G220.64' => 'can', 'CAN.G220.65' => 'can', 'CAN.G220.92' => 'can', 'CAN.G524.36' => 'can', 'CAN.G588.66' => 'can', 'CAN.G674.11' => 'can', 'CAN.G681.64' => 'can', 'CAN.G681.65' => 'can', 'CAN.G681.66' => 'can', 'CAN.G681.68' => 'can', 'CAN.G681.69' => 'can', 'CANSAT21G0944' => 'cansat', 'CANSAT21G1419' => 'cansat', 'CANSAT25G3284' => 'cansat', 'CANSAT78G1771' => 'cansat', 'CARHR099420' => 'chi', 'CARHR099430' => 'chi', 'Carub.0003s2371' => 'cru', 'Carub.0003s2373' => 'cru', 'Ca_09809_v3' => 'car', 'Ca_11937_v3' => 'car', 'Ca_28724_v3' => 'car', 'Ca_30490_v3' => 'car', 'CBR_g31184' => 'cbr', 'Cc03_g05980' => 'ccan', 'CDE08G0370' => 'cde', 'CDE08G1432' => 'cde', 'CDE08G1481' => 'cde', 'Cfa014764' => 'cfa', 'Cfa014765' => 'cfa', 'Cfa025193' => 'cfa', 'Cfa025468' => 'cfa', 'Ciclev10004346m.g' => 'ccl', 'Ciclev10005536m.g' => 'ccl', 'Ciclev10005710m.g' => 'ccl', 'Ciclev10005727m.g' => 'ccl', 'Ciclev10007034m.g' => 'ccl', 'Ciclev10030464m.g' => 'ccl', 'CiPaw.01G179700' => 'cil', 'CiPaw.01G179800' => 'cil', 'CiPaw.01G180000' => 'cil', 'CiPaw.01G180100' => 'cil', 'CiPaw.01G180200' => 'cil', 'CiPaw.04G074600' => 'cil', 'CiPaw.11G113200' => 'cil', 'CiPaw.12G016000' => 'cil', 'CiPaw.14G041800' => 'cil', 'CiPaw.14G090000' => 'cil', 'ClCG00G005870' => 'cla', 'ClCG06G007160' => 'cla', 'ClCG06G007170' => 'cla', 'ClCG06G007180' => 'cla', 'ClCG07G007110' => 'cla', 'ClCG07G007160' => 'cla', 'ClCG07G007170' => 'cla', 'ClCG09G014600' => 'cla', 'COL.COLO4_00227' => 'col', 'COL.COLO4_15937' => 'col', 'COL.COLO4_15940' => 'col', 'COL.COLO4_15941' => 'col', 'COL.COLO4_15943' => 'col', 'COL.COLO4_20821' => 'col', 'COL.COLO4_25895' => 'col', 'COL.COLO4_25896' => 'col', 'COL.COLO4_25897' => 'col', 'COL.COLO4_25898' => 'col', 'COL.COLO4_25899' => 'col', 'COL.COLO4_25900' => 'col', 'COL.COLO4_25901' => 'col', 'COL.COLO4_25903' => 'col', 'COL.COLO4_30350' => 'col', 'Cpa.g.sc1584.1' => 'cpa', 'Cpa.g.sc44.17' => 'cpa', 'Cpa.g.sc44.18' => 'cpa', 'Cre06.g281250' => 'cre', 'CsaV3_2G012540' => 'csa', 'CsaV3_2G012550' => 'csa', 'CsaV3_2G012560' => 'csa', 'CSS0032050' => 'camsi', 'CSS0047456' => 'camsi', 'DCAR_030759' => 'dca', 'Dinv29819' => 'din', 'Duzib052G1047' => 'dzi', 'Duzib151G0707' => 'dzi', 'Duzib212G0708' => 'dzi', 'Duzib212G0719' => 'dzi', 'EL10Ac3g04936' => 'bvu', 'EL10Ac3g04960' => 'bvu', 'EL10Ac3g04961' => 'bvu', 'EL10Ac3g04963' => 'bvu', 'EL10Ac3g04964' => 'bvu', 'Eucgr.H02968' => 'egr', 'Eucgr.H02969' => 'egr', 'Eucgr.H02971' => 'egr', 'Eucgr.H02972' => 'egr', 'Eucgr.H02975' => 'egr', 'Eucgr.H02976' => 'egr', 'FAN01G2895' => 'fan', 'FAN01G2911' => 'fan', 'FAN06G0180' => 'fan', 'FAN06G1053' => 'fan', 'FAN06G1280' => 'fan', 'FAN06G2889' => 'fan', 'FAN06G4487' => 'fan', 'FAN12G0280' => 'fan', 'FAN12G3384' => 'fan', 'FAN17G0060' => 'fan', 'FAN17G3117' => 'fan', 'FAN21G3292' => 'fan', 'FAN22G1285' => 'fan', 'FAN22G2004' => 'fan', 'FvH4_4g04310' => 'fve', 'FvH4_4g04360' => 'fve', 'FvH4_4g04361' => 'fve', 'FvH4_7g18110' => 'fve', 'FvH4_7g18140' => 'fve', 'FvH4_7g18480' => 'fve', 'FvH4_7g18481' => 'fve', 'Glyma.10G189400' => 'gma', 'Glyma.20G201400' => 'gma', 'Gohir.A01G025200' => 'ghi', 'Gohir.A01G025600' => 'ghi', 'Gohir.A02G041801' => 'ghi', 'Gohir.A02G041802' => 'ghi', 'Gohir.A02G042000' => 'ghi', 'Gohir.A09G228050' => 'ghi', 'Gohir.A10G159666' => 'ghi', 'Gohir.D01G023400' => 'ghi', 'Gohir.D01G023409' => 'ghi', 'Gohir.D01G077101' => 'ghi', 'Gohir.D02G047550' => 'ghi', 'Gohir.D02G047600' => 'ghi', 'Gohir.D03G094750' => 'ghi', 'Gohir.D09G229100' => 'ghi', 'Gohir.D10G084600' => 'ghi', 'Gohir.D10G211900' => 'ghi', 'Gohir.D13G167111' => 'ghi', 'Gorai.002G025800' => 'gra', 'Gorai.002G026100' => 'gra', 'Gorai.005G052800' => 'gra', 'Gorai.005G052900' => 'gra', 'Gorai.006G251800' => 'gra', 'Gorai.011G092100' => 'gra', 'GSVIVG01027886001' => 'vvi', 'GSVIVG01027890001' => 'vvi', 'HanXRQChr02g0059351' => 'han', 'HanXRQChr12g0361741' => 'han', 'HanXRQChr12g0362451' => 'han', 'HanXRQChr12g0362471' => 'han', 'HanXRQChr12g0362501' => 'han', 'HanXRQChr12g0362671' => 'han', 'HanXRQChr12g0362681' => 'han', 'HanXRQChr12g0362691' => 'han', 'Haze_11439' => 'cav', 'Haze_11441' => 'cav', 'Haze_11442' => 'cav', 'Hma1.2p1_0267F.1_g107070' => 'hma', 'Hma1.2p1_0267F.1_g107080' => 'hma', 'Hma1.2p1_0385F.1_g141425' => 'hma', 'Hma1.2p1_0385F.1_g141430' => 'hma', 'Hma1.2p1_3458F.1_g336110' => 'hma', 'HPP92_009056' => 'vpl', 'HPP92_028141' => 'vpl', 'Hund03062' => 'sun', 'Hund03063' => 'sun', 'Hund03064' => 'sun', 'Hund03065' => 'sun', 'Hund03066' => 'sun', 'Hund03067' => 'sun', 'Hund03069' => 'sun', 'Hund03070' => 'sun', 'Hund03071' => 'sun', 'Hund03072' => 'sun', 'Hund03073' => 'sun', 'Hund03074' => 'sun', 'Hund03075' => 'sun', 'Hund03538' => 'sun', 'Lalb_Chr06g0169441' => 'lal', 'Lalb_Chr06g0169451' => 'lal', 'Lalb_Chr21g0312441' => 'lal', 'Lj5g0020800' => 'lja', 'Lj6C623G11' => 'lonja', 'Lj6C623T7' => 'lonja', 'Lsat_1_v5_gn_6_54580' => 'lsa', 'Lsat_1_v5_gn_6_54640' => 'lsa', 'Lsat_1_v5_gn_6_54780' => 'lsa', 'Lsat_1_v5_gn_6_56761' => 'lsa', 'Lsat_1_v5_gn_6_56781' => 'lsa', 'Lsat_1_v5_gn_6_56941' => 'lsa', 'Lsat_1_v5_gn_6_68821' => 'lsa', 'Manes.03G160700' => 'mes', 'Manes.03G160800' => 'mes', 'Manes.03G160850' => 'mes', 'Manes.03G160900' => 'mes', 'Manes.03G161000' => 'mes', 'Manes.03G161100' => 'mes', 'Manes.03G161200' => 'mes', 'Manes.03G161350' => 'mes', 'Manes.12G059300' => 'mes', 'Manes.15G043966' => 'mes', 'Mapoly0062s0039' => 'mpo', 'Mapoly1664s0001' => 'mpo', 'Mapoly3054s0001' => 'mpo', 'Mapoly4131s0001' => 'mpo', 'MBI07_g11125_MAGBIO' => 'mbi', 'MBI07_g14511_MAGBIO' => 'mbi', 'MBI07_g20243_MAGBIO' => 'mbi', 'MCO05G694' => 'mco', 'MD16G1224400' => 'mdo', 'Medtr1g044520' => 'mtr', 'Medtr1g073700' => 'mtr', 'MELO3C000522.2' => 'cme', 'MELO3C001398.2' => 'cme', 'MELO3C023030.2' => 'cme', 'MELO3C023031.2' => 'cme', 'MELO3C023032.2' => 'cme', 'MELO3C027187.2' => 'cme', 'MELO3C027751.2' => 'cme', 'MELO3C031245.2' => 'cme', 'Migut.G00492' => 'egut', 'Migut.N00291' => 'egut', 'MSTRG.24666' => 'ama', 'MSTRG.4158' => 'ama', 'Nitab4.5_0000049g0080' => 'nta', 'Nitab4.5_0000474g0040' => 'nta', 'Nitab4.5_0000483g0040' => 'nta', 'Nitab4.5_0001051g0160' => 'nta', 'Nitab4.5_0001425g0010' => 'nta', 'Nitab4.5_0001425g0020' => 'nta', 'Nitab4.5_0001425g0070' => 'nta', 'Nitab4.5_0001470g0020' => 'nta', 'Nitab4.5_0001470g0030' => 'nta', 'Nitab4.5_0001470g0040' => 'nta', 'Nitab4.5_0001470g0050' => 'nta', 'Nitab4.5_0001470g0060' => 'nta', 'Nitab4.5_0001470g0070' => 'nta', 'Nitab4.5_0001470g0080' => 'nta', 'Nitab4.5_0002293g0020' => 'nta', 'Nitab4.5_0002709g0090' => 'nta', 'Nitab4.5_0004167g0040' => 'nta', 'Nitab4.5_0005604g0010' => 'nta', 'Nitab4.5_0006069g0030' => 'nta', 'Nitab4.5_0009537g0010' => 'nta', 'Nitab4.5_0016872g0010' => 'nta', 'Nitab4.5_0019395g0010' => 'nta', 'Nitab4.5_0026646g0010' => 'nta', 'Nn1g02911' => 'nnu', 'Oeu055250.1' => 'oeu', 'Oeu055251.1' => 'oeu', 'Os07g0474600' => 'osa', 'Os12g0267100' => 'osa', 'Os12g0267200' => 'osa', 'Peaxi162Scf00013g00340' => 'pax', 'Peaxi162Scf00033g00261' => 'pax', 'Peaxi162Scf00033g00275' => 'pax', 'Peaxi162Scf00033g02610' => 'pax', 'Peaxi162Scf00033g02611' => 'pax', 'Peaxi162Scf00169g00317' => 'pax', 'Peaxi162Scf00169g00318' => 'pax', 'Peaxi162Scf00266g01010' => 'pax', 'Peaxi162Scf00300g00058' => 'pax', 'Peaxi162Scf00300g00518' => 'pax', 'Peaxi162Scf00321g00036' => 'pax', 'Peaxi162Scf00817g00119' => 'pax', 'Peaxi162Scf00817g00120' => 'pax', 'Peaxi162Scf01082g00025' => 'pax', 'Peaxi162Scf01082g00028' => 'pax', 'Peaxi162Scf01248g00314' => 'pax', 'Peaxi162Scf01248g00420' => 'pax', 'Peaxi162Scf01248g00421' => 'pax', 'PGR004G2782' => 'pgr', 'PGSC0003DMG400007263' => 'stu', 'PGSC0003DMG400007265' => 'stu', 'PGSC0003DMG400016834' => 'stu', 'PGSC0003DMG400017202' => 'stu', 'Phvul.008G158130' => 'pvu', 'Potri.008G170300' => 'ptr', 'Potri.010G067567' => 'ptr', 'Potri.010G067600' => 'ptr', 'Potri.010G067700' => 'ptr', 'Potri.010G067800' => 'ptr', 'Potri.010G067900' => 'ptr', 'Pp3c1_41090' => 'ppa', 'PRCOL_00005990' => 'pco', 'Prupe.1G045800' => 'ppe', 'Psat1g031880' => 'psa', 'Psat6g133480' => 'psa', 'PSO017G4741' => 'pso', 'PSO017G5938' => 'pso', 'PSO063G7051' => 'pso', 'QL06p020190' => 'qlo', 'QL06p020465' => 'qlo', 'QL06p020509' => 'qlo', 'QL06p020553' => 'qlo', 'QL06p020653' => 'qlo', 'QL06p020667' => 'qlo', 'RcHm_v2.0_Chr1g0325031' => 'rch', 'RcHm_v2.0_Chr1g0362281' => 'rch', 'RcHm_v2.0_Chr4g0390341' => 'rch', 'RcHm_v2.0_Chr4g0394761' => 'rch', 'RcHm_v2.0_Chr4g0394801' => 'rch', 'RcHm_v2.0_Chr4g0394871' => 'rch', 'RcHm_v2.0_Chr4g0394921' => 'rch', 'RcHm_v2.0_Chr4g0394931' => 'rch', 'RcHm_v2.0_Chr4g0394941' => 'rch', 'RcHm_v2.0_Chr4g0404311' => 'rch', 'RcHm_v2.0_Chr6g0258991' => 'rch', 'RcHm_v2.0_Chr6g0273911' => 'rch', 'RcHm_v2.0_Chr6g0288341' => 'rch', 'Rhsim04G0173900' => 'rsi', 'Rhsim04G0174000' => 'rsi', 'Rhsim04G0174200' => 'rsi', 'Rhsim04G0174300' => 'rsi', 'Sabra08G0130000' => 'sbr', 'Sabra08G0130100' => 'sbr', 'Sabra08G0130200' => 'sbr', 'Sabra10G0039500' => 'sbr', 'Sabra10G0039600' => 'sbr', 'Sabra10G0039700' => 'sbr', 'Sabra10G0039900' => 'sbr', 'SalBow1G2701' => 'sbo', 'SalBow3G4332' => 'sbo', 'SalBow8G0297' => 'sbo', 'SalBow8G1010' => 'sbo', 'SalBow8G1245' => 'sbo', 'SalBow8G2494' => 'sbo', 'SalBow8G2922' => 'sbo', 'SalBow8G3176' => 'sbo', 'SalBow8G3913' => 'sbo', 'SalBow8G4116' => 'sbo', 'SalBow8G4602' => 'sbo', 'SalBow8G5067' => 'sbo', 'Sc13g0005970' => 'sci', 'Sc13g0006090' => 'sci', 'Sc13g0006100' => 'sci', 'Sc13g0006110' => 'sci', 'Sed0000108' => 'sed', 'Sed0007860' => 'sed', 'Sed0021154' => 'sed', 'SEGI_06360' => 'sgi', 'SEGI_07006' => 'sgi', 'SEGI_11340' => 'sgi', 'SEGI_14689' => 'sgi', 'SEGI_20730' => 'sgi', 'SEGI_23794' => 'sgi', 'SEGI_32890' => 'sgi', 'SEGI_38188' => 'sgi', 'SGA_v2.0_scaffold31G12645' => 'sas', 'SGA_v2.0_scaffold67G22708' => 'sas', 'SMO356G0103' => 'smo', 'Solyc03g045140.4' => 'sly', 'Solyc03g045150.1' => 'sly', 'Solyc04g056440.3' => 'sly', 'Solyc04g056450.4' => 'sly', 'Solyc07g150128.1' => 'sly', 'Solyc09g090500.3' => 'sly', 'Solyc09g090510.3' => 'sly', 'Sopen03g009610' => 'spe', 'Sopen04g025330' => 'spe', 'Sopen04g025340' => 'spe', 'Sopen09g033420' => 'spe', 'Sopen09g033430' => 'spe', 'Sopen09g033440' => 'spe', 'Sp3g21120' => 'spa', 'Sp3g21130' => 'spa', 'Sp3g21140' => 'spa', 'Sp3g21180' => 'spa', 'SpUn0047_0010' => 'spa', 'SpUn0047_0020' => 'spa', 'TAR362G0672' => 'tar', 'THA.LOC104804765' => 'tha', 'THA.LOC104806424' => 'tha', 'THA.LOC104808649' => 'tha', 'THA.LOC104808651' => 'tha', 'THA.LOC104808652' => 'tha', 'THA.LOC104808653' => 'tha', 'Thecc.04G260700' => 'tca', 'Thecc.04G260800' => 'tca', 'Thecc.04G260900' => 'tca', 'Thecc.04G261000' => 'tca', 'Thecc.04G261200' => 'tca', 'Thecc.04G261300' => 'tca', 'Thecc.04G261400' => 'tca', 'Thecc.04G261500' => 'tca', 'Thecc.04G262900' => 'tca', 'Thhalv10020039m.g' => 'esa', 'Thhalv10020040m.g' => 'esa', 'Thhalv10020049m.g' => 'esa', 'Thhalv10022172m.g' => 'esa', 'TPR.G28756' => 'tpr', 'TPR.G28852' => 'tpr', 'TWI09G0985' => 'twi', 'TWI09G1386' => 'twi', 'unitig_749.g13515' => 'ugi', 'vmacro08534' => 'vma', 'vmacro08535' => 'vma', 'vmacro08536' => 'vma', 'VMungo0720G1851' => 'vmu', 'Zm00001eb041970' => 'zma', 'Zm00001eb102480' => 'zma', 'Zm00001eb164950' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001254' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001254' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001254' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001254' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001254', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '498', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p31550' => 'bna', 'A01p31560' => 'bna', 'A03p43290' => 'bna', 'A07p08890' => 'bna', 'A07p08980' => 'bna', 'A07p08990' => 'bna', 'Aa31LG8G9970' => 'aar', 'Aa31LG8G9980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.418' => 'aag', 'Actinidia35810' => 'ach', 'Ah.04g155380' => 'amhyb', 'Ah.13g072320' => 'amhyb', 'AL242U10010' => 'aly', 'AL242U10030' => 'aly', 'AL3G38120' => 'aly', 'AL3G38170' => 'aly', 'AL3G38190' => 'aly', 'Aqoxy2G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08UV73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M4LDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56Z1DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I33M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5I47GQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZS5X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60TT6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2G91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WEA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BHDE6S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AW8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ3JB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I255AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2BZ41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTU25K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2HI9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4GAS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNBV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6IN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX4IN3' => 'arhy', 'AT3G23460' => 'ath', 'AT3G23470' => 'ath', 'AT3G23480' => 'ath', 'AT3G23510' => 'ath', 'AT3G23530' => 'ath', 'ATR0736G203' => 'atr', 'Atru.chr4.1938' => 'acertr', 'Atru.chr4.1940' => 'acertr', 'Atru.chr6.2805' => 'acertr', 'AUR62002177' => 'cqu', 'AUR62015532' => 'cqu', 'AUR62016161' => 'cqu', 'AUR62035075' => 'cqu', 'BcaB03g14622' => 'bca', 'BcaB04g20446' => 'bca', 'BcaB06g26491' => 'bca', 'BcaB06g26493' => 'bca', 'BcaB06g26502' => 'bca', 'BcaC01g03370' => 'bca', 'BcaC01g03804' => 'bca', 'BcaC06g35528' => 'bca', 'BcaC06g35529' => 'bca', 'BcaC06g35537' => 'bca', 'BcaC09g49303' => 'bca', 'BolC1t03986H' => 'bol', 'BolC3t17123H' => 'bol', 'BolC3t17584H' => 'bol', 'BolC6t37463H' => 'bol', 'BolC7t41867H' => 'bol', 'BolC7t41884H' => 'bol', 'BolC7t41886H' => 'bol', 'BolC7t41887H' => 'bol', 'BolC7t41888H' => 'bol', 'BraA01t03285Z' => 'bra', 'BraA01t03286Z' => 'bra', 'BraA03t13468Z' => 'bra', 'BraA07t28679Z' => 'bra', 'BraA07t28688Z' => 'bra', 'BraA07t28689Z' => 'bra', 'BraA07t28692Z' => 'bra', 'BraA07t28694Z' => 'bra', 'C01p40250' => 'bna', 'C01p40290' => 'bna', 'C01p40320' => 'bna', 'C03p48450' => 'bna', 'C03p53200' => 'bna', 'C07p13720' => 'bna', 'C07p13820' => 'bna', 'C07p13830' => 'bna', 'C07p13850' => 'bna', 'C07p13860' => 'bna', 'CAN.G135.73' => 'can', 'CAN.G1801.3' => 'can', 'CAN.G220.58' => 'can', 'CAN.G220.59' => 'can', 'CAN.G220.60' => 'can', 'CAN.G220.61' => 'can', 'CAN.G220.62' => 'can', 'CAN.G220.63' => 'can', 'CAN.G220.64' => 'can', 'CAN.G220.65' => 'can', 'CAN.G220.92' => 'can', 'CAN.G524.36' => 'can', 'CAN.G588.66' => 'can', 'CAN.G674.11' => 'can', 'CAN.G681.64' => 'can', 'CAN.G681.65' => 'can', 'CAN.G681.66' => 'can', 'CAN.G681.68' => 'can', 'CAN.G681.69' => 'can', 'CANSAT21G0944' => 'cansat', 'CANSAT21G1419' => 'cansat', 'CANSAT25G3284' => 'cansat', 'CANSAT78G1771' => 'cansat', 'CARHR099420' => 'chi', 'CARHR099430' => 'chi', 'Carub.0003s2371' => 'cru', 'Carub.0003s2373' => 'cru', 'Ca_09809_v3' => 'car', 'Ca_11937_v3' => 'car', 'Ca_28724_v3' => 'car', 'Ca_30490_v3' => 'car', 'CBR_g31184' => 'cbr', 'Cc03_g05980' => 'ccan', 'CDE08G0370' => 'cde', 'CDE08G1432' => 'cde', 'CDE08G1481' => 'cde', 'Cfa014764' => 'cfa', 'Cfa014765' => 'cfa', 'Cfa025193' => 'cfa', 'Cfa025468' => 'cfa', 'Ciclev10004346m.g' => 'ccl', 'Ciclev10005536m.g' => 'ccl', 'Ciclev10005710m.g' => 'ccl', 'Ciclev10005727m.g' => 'ccl', 'Ciclev10007034m.g' => 'ccl', 'Ciclev10030464m.g' => 'ccl', 'CiPaw.01G179700' => 'cil', 'CiPaw.01G179800' => 'cil', 'CiPaw.01G180000' => 'cil', 'CiPaw.01G180100' => 'cil', 'CiPaw.01G180200' => 'cil', 'CiPaw.04G074600' => 'cil', 'CiPaw.11G113200' => 'cil', 'CiPaw.12G016000' => 'cil', 'CiPaw.14G041800' => 'cil', 'CiPaw.14G090000' => 'cil', 'ClCG00G005870' => 'cla', 'ClCG06G007160' => 'cla', 'ClCG06G007170' => 'cla', 'ClCG06G007180' => 'cla', 'ClCG07G007110' => 'cla', 'ClCG07G007160' => 'cla', 'ClCG07G007170' => 'cla', 'ClCG09G014600' => 'cla', 'COL.COLO4_00227' => 'col', 'COL.COLO4_15937' => 'col', 'COL.COLO4_15940' => 'col', 'COL.COLO4_15941' => 'col', 'COL.COLO4_15943' => 'col', 'COL.COLO4_20821' => 'col', 'COL.COLO4_25895' => 'col', 'COL.COLO4_25896' => 'col', 'COL.COLO4_25897' => 'col', 'COL.COLO4_25898' => 'col', 'COL.COLO4_25899' => 'col', 'COL.COLO4_25900' => 'col', 'COL.COLO4_25901' => 'col', 'COL.COLO4_25903' => 'col', 'COL.COLO4_30350' => 'col', 'Cpa.g.sc1584.1' => 'cpa', 'Cpa.g.sc44.17' => 'cpa', 'Cpa.g.sc44.18' => 'cpa', 'Cre06.g281250' => 'cre', 'CsaV3_2G012540' => 'csa', 'CsaV3_2G012550' => 'csa', 'CsaV3_2G012560' => 'csa', 'CSS0032050' => 'camsi', 'CSS0047456' => 'camsi', 'DCAR_030759' => 'dca', 'Dinv29819' => 'din', 'Duzib052G1047' => 'dzi', 'Duzib151G0707' => 'dzi', 'Duzib212G0708' => 'dzi', 'Duzib212G0719' => 'dzi', 'EL10Ac3g04936' => 'bvu', 'EL10Ac3g04960' => 'bvu', 'EL10Ac3g04961' => 'bvu', 'EL10Ac3g04963' => 'bvu', 'EL10Ac3g04964' => 'bvu', 'Eucgr.H02968' => 'egr', 'Eucgr.H02969' => 'egr', 'Eucgr.H02971' => 'egr', 'Eucgr.H02972' => 'egr', 'Eucgr.H02975' => 'egr', 'Eucgr.H02976' => 'egr', 'FAN01G2895' => 'fan', 'FAN01G2911' => 'fan', 'FAN06G0180' => 'fan', 'FAN06G1053' => 'fan', 'FAN06G1280' => 'fan', 'FAN06G2889' => 'fan', 'FAN06G4487' => 'fan', 'FAN12G0280' => 'fan', 'FAN12G3384' => 'fan', 'FAN17G0060' => 'fan', 'FAN17G3117' => 'fan', 'FAN21G3292' => 'fan', 'FAN22G1285' => 'fan', 'FAN22G2004' => 'fan', 'FvH4_4g04310' => 'fve', 'FvH4_4g04360' => 'fve', 'FvH4_4g04361' => 'fve', 'FvH4_7g18110' => 'fve', 'FvH4_7g18140' => 'fve', 'FvH4_7g18480' => 'fve', 'FvH4_7g18481' => 'fve', 'Glyma.10G189400' => 'gma', 'Glyma.20G201400' => 'gma', 'Gohir.A01G025200' => 'ghi', 'Gohir.A01G025600' => 'ghi', 'Gohir.A02G041801' => 'ghi', 'Gohir.A02G041802' => 'ghi', 'Gohir.A02G042000' => 'ghi', 'Gohir.A09G228050' => 'ghi', 'Gohir.A10G159666' => 'ghi', 'Gohir.D01G023400' => 'ghi', 'Gohir.D01G023409' => 'ghi', 'Gohir.D01G077101' => 'ghi', 'Gohir.D02G047550' => 'ghi', 'Gohir.D02G047600' => 'ghi', 'Gohir.D03G094750' => 'ghi', 'Gohir.D09G229100' => 'ghi', 'Gohir.D10G084600' => 'ghi', 'Gohir.D10G211900' => 'ghi', 'Gohir.D13G167111' => 'ghi', 'Gorai.002G025800' => 'gra', 'Gorai.002G026100' => 'gra', 'Gorai.005G052800' => 'gra', 'Gorai.005G052900' => 'gra', 'Gorai.006G251800' => 'gra', 'Gorai.011G092100' => 'gra', 'GSVIVG01027886001' => 'vvi', 'GSVIVG01027890001' => 'vvi', 'HanXRQChr02g0059351' => 'han', 'HanXRQChr12g0361741' => 'han', 'HanXRQChr12g0362451' => 'han', 'HanXRQChr12g0362471' => 'han', 'HanXRQChr12g0362501' => 'han', 'HanXRQChr12g0362671' => 'han', 'HanXRQChr12g0362681' => 'han', 'HanXRQChr12g0362691' => 'han', 'Haze_11439' => 'cav', 'Haze_11441' => 'cav', 'Haze_11442' => 'cav', 'Hma1.2p1_0267F.1_g107070' => 'hma', 'Hma1.2p1_0267F.1_g107080' => 'hma', 'Hma1.2p1_0385F.1_g141425' => 'hma', 'Hma1.2p1_0385F.1_g141430' => 'hma', 'Hma1.2p1_3458F.1_g336110' => 'hma', 'HPP92_009056' => 'vpl', 'HPP92_028141' => 'vpl', 'Hund03062' => 'sun', 'Hund03063' => 'sun', 'Hund03064' => 'sun', 'Hund03065' => 'sun', 'Hund03066' => 'sun', 'Hund03067' => 'sun', 'Hund03069' => 'sun', 'Hund03070' => 'sun', 'Hund03071' => 'sun', 'Hund03072' => 'sun', 'Hund03073' => 'sun', 'Hund03074' => 'sun', 'Hund03075' => 'sun', 'Hund03538' => 'sun', 'Lalb_Chr06g0169441' => 'lal', 'Lalb_Chr06g0169451' => 'lal', 'Lalb_Chr21g0312441' => 'lal', 'Lj5g0020800' => 'lja', 'Lj6C623G11' => 'lonja', 'Lj6C623T7' => 'lonja', 'Lsat_1_v5_gn_6_54580' => 'lsa', 'Lsat_1_v5_gn_6_54640' => 'lsa', 'Lsat_1_v5_gn_6_54780' => 'lsa', 'Lsat_1_v5_gn_6_56761' => 'lsa', 'Lsat_1_v5_gn_6_56781' => 'lsa', 'Lsat_1_v5_gn_6_56941' => 'lsa', 'Lsat_1_v5_gn_6_68821' => 'lsa', 'Manes.03G160700' => 'mes', 'Manes.03G160800' => 'mes', 'Manes.03G160850' => 'mes', 'Manes.03G160900' => 'mes', 'Manes.03G161000' => 'mes', 'Manes.03G161100' => 'mes', 'Manes.03G161200' => 'mes', 'Manes.03G161350' => 'mes', 'Manes.12G059300' => 'mes', 'Manes.15G043966' => 'mes', 'Mapoly0062s0039' => 'mpo', 'Mapoly1664s0001' => 'mpo', 'Mapoly3054s0001' => 'mpo', 'Mapoly4131s0001' => 'mpo', 'MBI07_g11125_MAGBIO' => 'mbi', 'MBI07_g14511_MAGBIO' => 'mbi', 'MBI07_g20243_MAGBIO' => 'mbi', 'MCO05G694' => 'mco', 'MD16G1224400' => 'mdo', 'Medtr1g044520' => 'mtr', 'Medtr1g073700' => 'mtr', 'MELO3C000522.2' => 'cme', 'MELO3C001398.2' => 'cme', 'MELO3C023030.2' => 'cme', 'MELO3C023031.2' => 'cme', 'MELO3C023032.2' => 'cme', 'MELO3C027187.2' => 'cme', 'MELO3C027751.2' => 'cme', 'MELO3C031245.2' => 'cme', 'Migut.G00492' => 'egut', 'Migut.N00291' => 'egut', 'MSTRG.24666' => 'ama', 'MSTRG.4158' => 'ama', 'Nitab4.5_0000049g0080' => 'nta', 'Nitab4.5_0000474g0040' => 'nta', 'Nitab4.5_0000483g0040' => 'nta', 'Nitab4.5_0001051g0160' => 'nta', 'Nitab4.5_0001425g0010' => 'nta', 'Nitab4.5_0001425g0020' => 'nta', 'Nitab4.5_0001425g0070' => 'nta', 'Nitab4.5_0001470g0020' => 'nta', 'Nitab4.5_0001470g0030' => 'nta', 'Nitab4.5_0001470g0040' => 'nta', 'Nitab4.5_0001470g0050' => 'nta', 'Nitab4.5_0001470g0060' => 'nta', 'Nitab4.5_0001470g0070' => 'nta', 'Nitab4.5_0001470g0080' => 'nta', 'Nitab4.5_0002293g0020' => 'nta', 'Nitab4.5_0002709g0090' => 'nta', 'Nitab4.5_0004167g0040' => 'nta', 'Nitab4.5_0005604g0010' => 'nta', 'Nitab4.5_0006069g0030' => 'nta', 'Nitab4.5_0009537g0010' => 'nta', 'Nitab4.5_0016872g0010' => 'nta', 'Nitab4.5_0019395g0010' => 'nta', 'Nitab4.5_0026646g0010' => 'nta', 'Nn1g02911' => 'nnu', 'Oeu055250.1' => 'oeu', 'Oeu055251.1' => 'oeu', 'Os07g0474600' => 'osa', 'Os12g0267100' => 'osa', 'Os12g0267200' => 'osa', 'Peaxi162Scf00013g00340' => 'pax', 'Peaxi162Scf00033g00261' => 'pax', 'Peaxi162Scf00033g00275' => 'pax', 'Peaxi162Scf00033g02610' => 'pax', 'Peaxi162Scf00033g02611' => 'pax', 'Peaxi162Scf00169g00317' => 'pax', 'Peaxi162Scf00169g00318' => 'pax', 'Peaxi162Scf00266g01010' => 'pax', 'Peaxi162Scf00300g00058' => 'pax', 'Peaxi162Scf00300g00518' => 'pax', 'Peaxi162Scf00321g00036' => 'pax', 'Peaxi162Scf00817g00119' => 'pax', 'Peaxi162Scf00817g00120' => 'pax', 'Peaxi162Scf01082g00025' => 'pax', 'Peaxi162Scf01082g00028' => 'pax', 'Peaxi162Scf01248g00314' => 'pax', 'Peaxi162Scf01248g00420' => 'pax', 'Peaxi162Scf01248g00421' => 'pax', 'PGR004G2782' => 'pgr', 'PGSC0003DMG400007263' => 'stu', 'PGSC0003DMG400007265' => 'stu', 'PGSC0003DMG400016834' => 'stu', 'PGSC0003DMG400017202' => 'stu', 'Phvul.008G158130' => 'pvu', 'Potri.008G170300' => 'ptr', 'Potri.010G067567' => 'ptr', 'Potri.010G067600' => 'ptr', 'Potri.010G067700' => 'ptr', 'Potri.010G067800' => 'ptr', 'Potri.010G067900' => 'ptr', 'Pp3c1_41090' => 'ppa', 'PRCOL_00005990' => 'pco', 'Prupe.1G045800' => 'ppe', 'Psat1g031880' => 'psa', 'Psat6g133480' => 'psa', 'PSO017G4741' => 'pso', 'PSO017G5938' => 'pso', 'PSO063G7051' => 'pso', 'QL06p020190' => 'qlo', 'QL06p020465' => 'qlo', 'QL06p020509' => 'qlo', 'QL06p020553' => 'qlo', 'QL06p020653' => 'qlo', 'QL06p020667' => 'qlo', 'RcHm_v2.0_Chr1g0325031' => 'rch', 'RcHm_v2.0_Chr1g0362281' => 'rch', 'RcHm_v2.0_Chr4g0390341' => 'rch', 'RcHm_v2.0_Chr4g0394761' => 'rch', 'RcHm_v2.0_Chr4g0394801' => 'rch', 'RcHm_v2.0_Chr4g0394871' => 'rch', 'RcHm_v2.0_Chr4g0394921' => 'rch', 'RcHm_v2.0_Chr4g0394931' => 'rch', 'RcHm_v2.0_Chr4g0394941' => 'rch', 'RcHm_v2.0_Chr4g0404311' => 'rch', 'RcHm_v2.0_Chr6g0258991' => 'rch', 'RcHm_v2.0_Chr6g0273911' => 'rch', 'RcHm_v2.0_Chr6g0288341' => 'rch', 'Rhsim04G0173900' => 'rsi', 'Rhsim04G0174000' => 'rsi', 'Rhsim04G0174200' => 'rsi', 'Rhsim04G0174300' => 'rsi', 'Sabra08G0130000' => 'sbr', 'Sabra08G0130100' => 'sbr', 'Sabra08G0130200' => 'sbr', 'Sabra10G0039500' => 'sbr', 'Sabra10G0039600' => 'sbr', 'Sabra10G0039700' => 'sbr', 'Sabra10G0039900' => 'sbr', 'SalBow1G2701' => 'sbo', 'SalBow3G4332' => 'sbo', 'SalBow8G0297' => 'sbo', 'SalBow8G1010' => 'sbo', 'SalBow8G1245' => 'sbo', 'SalBow8G2494' => 'sbo', 'SalBow8G2922' => 'sbo', 'SalBow8G3176' => 'sbo', 'SalBow8G3913' => 'sbo', 'SalBow8G4116' => 'sbo', 'SalBow8G4602' => 'sbo', 'SalBow8G5067' => 'sbo', 'Sc13g0005970' => 'sci', 'Sc13g0006090' => 'sci', 'Sc13g0006100' => 'sci', 'Sc13g0006110' => 'sci', 'Sed0000108' => 'sed', 'Sed0007860' => 'sed', 'Sed0021154' => 'sed', 'SEGI_06360' => 'sgi', 'SEGI_07006' => 'sgi', 'SEGI_11340' => 'sgi', 'SEGI_14689' => 'sgi', 'SEGI_20730' => 'sgi', 'SEGI_23794' => 'sgi', 'SEGI_32890' => 'sgi', 'SEGI_38188' => 'sgi', 'SGA_v2.0_scaffold31G12645' => 'sas', 'SGA_v2.0_scaffold67G22708' => 'sas', 'SMO356G0103' => 'smo', 'Solyc03g045140.4' => 'sly', 'Solyc03g045150.1' => 'sly', 'Solyc04g056440.3' => 'sly', 'Solyc04g056450.4' => 'sly', 'Solyc07g150128.1' => 'sly', 'Solyc09g090500.3' => 'sly', 'Solyc09g090510.3' => 'sly', 'Sopen03g009610' => 'spe', 'Sopen04g025330' => 'spe', 'Sopen04g025340' => 'spe', 'Sopen09g033420' => 'spe', 'Sopen09g033430' => 'spe', 'Sopen09g033440' => 'spe', 'Sp3g21120' => 'spa', 'Sp3g21130' => 'spa', 'Sp3g21140' => 'spa', 'Sp3g21180' => 'spa', 'SpUn0047_0010' => 'spa', 'SpUn0047_0020' => 'spa', 'TAR362G0672' => 'tar', 'THA.LOC104804765' => 'tha', 'THA.LOC104806424' => 'tha', 'THA.LOC104808649' => 'tha', 'THA.LOC104808651' => 'tha', 'THA.LOC104808652' => 'tha', 'THA.LOC104808653' => 'tha', 'Thecc.04G260700' => 'tca', 'Thecc.04G260800' => 'tca', 'Thecc.04G260900' => 'tca', 'Thecc.04G261000' => 'tca', 'Thecc.04G261200' => 'tca', 'Thecc.04G261300' => 'tca', 'Thecc.04G261400' => 'tca', 'Thecc.04G261500' => 'tca', 'Thecc.04G262900' => 'tca', 'Thhalv10020039m.g' => 'esa', 'Thhalv10020040m.g' => 'esa', 'Thhalv10020049m.g' => 'esa', 'Thhalv10022172m.g' => 'esa', 'TPR.G28756' => 'tpr', 'TPR.G28852' => 'tpr', 'TWI09G0985' => 'twi', 'TWI09G1386' => 'twi', 'unitig_749.g13515' => 'ugi', 'vmacro08534' => 'vma', 'vmacro08535' => 'vma', 'vmacro08536' => 'vma', 'VMungo0720G1851' => 'vmu', 'Zm00001eb041970' => 'zma', 'Zm00001eb102480' => 'zma', 'Zm00001eb164950' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001254', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001254' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001254', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '498', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001254' ) ), 'genes' => array( 'A01p31550' => 'bna', 'A01p31560' => 'bna', 'A03p43290' => 'bna', 'A07p08890' => 'bna', 'A07p08980' => 'bna', 'A07p08990' => 'bna', 'Aa31LG8G9970' => 'aar', 'Aa31LG8G9980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.418' => 'aag', 'Actinidia35810' => 'ach', 'Ah.04g155380' => 'amhyb', 'Ah.13g072320' => 'amhyb', 'AL242U10010' => 'aly', 'AL242U10030' => 'aly', 'AL3G38120' => 'aly', 'AL3G38170' => 'aly', 'AL3G38190' => 'aly', 'Aqoxy2G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08UV73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M4LDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56Z1DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I33M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5I47GQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZS5X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60TT6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2G91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WEA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BHDE6S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AW8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ3JB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I255AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2BZ41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTU25K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2HI9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4GAS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNBV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6IN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX4IN3' => 'arhy', 'AT3G23460' => 'ath', 'AT3G23470' => 'ath', 'AT3G23480' => 'ath', 'AT3G23510' => 'ath', 'AT3G23530' => 'ath', 'ATR0736G203' => 'atr', 'Atru.chr4.1938' => 'acertr', 'Atru.chr4.1940' => 'acertr', 'Atru.chr6.2805' => 'acertr', 'AUR62002177' => 'cqu', 'AUR62015532' => 'cqu', 'AUR62016161' => 'cqu', 'AUR62035075' => 'cqu', 'BcaB03g14622' => 'bca', 'BcaB04g20446' => 'bca', 'BcaB06g26491' => 'bca', 'BcaB06g26493' => 'bca', 'BcaB06g26502' => 'bca', 'BcaC01g03370' => 'bca', 'BcaC01g03804' => 'bca', 'BcaC06g35528' => 'bca', 'BcaC06g35529' => 'bca', 'BcaC06g35537' => 'bca', 'BcaC09g49303' => 'bca', 'BolC1t03986H' => 'bol', 'BolC3t17123H' => 'bol', 'BolC3t17584H' => 'bol', 'BolC6t37463H' => 'bol', 'BolC7t41867H' => 'bol', 'BolC7t41884H' => 'bol', 'BolC7t41886H' => 'bol', 'BolC7t41887H' => 'bol', 'BolC7t41888H' => 'bol', 'BraA01t03285Z' => 'bra', 'BraA01t03286Z' => 'bra', 'BraA03t13468Z' => 'bra', 'BraA07t28679Z' => 'bra', 'BraA07t28688Z' => 'bra', 'BraA07t28689Z' => 'bra', 'BraA07t28692Z' => 'bra', 'BraA07t28694Z' => 'bra', 'C01p40250' => 'bna', 'C01p40290' => 'bna', 'C01p40320' => 'bna', 'C03p48450' => 'bna', 'C03p53200' => 'bna', 'C07p13720' => 'bna', 'C07p13820' => 'bna', 'C07p13830' => 'bna', 'C07p13850' => 'bna', 'C07p13860' => 'bna', 'CAN.G135.73' => 'can', 'CAN.G1801.3' => 'can', 'CAN.G220.58' => 'can', 'CAN.G220.59' => 'can', 'CAN.G220.60' => 'can', 'CAN.G220.61' => 'can', 'CAN.G220.62' => 'can', 'CAN.G220.63' => 'can', 'CAN.G220.64' => 'can', 'CAN.G220.65' => 'can', 'CAN.G220.92' => 'can', 'CAN.G524.36' => 'can', 'CAN.G588.66' => 'can', 'CAN.G674.11' => 'can', 'CAN.G681.64' => 'can', 'CAN.G681.65' => 'can', 'CAN.G681.66' => 'can', 'CAN.G681.68' => 'can', 'CAN.G681.69' => 'can', 'CANSAT21G0944' => 'cansat', 'CANSAT21G1419' => 'cansat', 'CANSAT25G3284' => 'cansat', 'CANSAT78G1771' => 'cansat', 'CARHR099420' => 'chi', 'CARHR099430' => 'chi', 'Carub.0003s2371' => 'cru', 'Carub.0003s2373' => 'cru', 'Ca_09809_v3' => 'car', 'Ca_11937_v3' => 'car', 'Ca_28724_v3' => 'car', 'Ca_30490_v3' => 'car', 'CBR_g31184' => 'cbr', 'Cc03_g05980' => 'ccan', 'CDE08G0370' => 'cde', 'CDE08G1432' => 'cde', 'CDE08G1481' => 'cde', 'Cfa014764' => 'cfa', 'Cfa014765' => 'cfa', 'Cfa025193' => 'cfa', 'Cfa025468' => 'cfa', 'Ciclev10004346m.g' => 'ccl', 'Ciclev10005536m.g' => 'ccl', 'Ciclev10005710m.g' => 'ccl', 'Ciclev10005727m.g' => 'ccl', 'Ciclev10007034m.g' => 'ccl', 'Ciclev10030464m.g' => 'ccl', 'CiPaw.01G179700' => 'cil', 'CiPaw.01G179800' => 'cil', 'CiPaw.01G180000' => 'cil', 'CiPaw.01G180100' => 'cil', 'CiPaw.01G180200' => 'cil', 'CiPaw.04G074600' => 'cil', 'CiPaw.11G113200' => 'cil', 'CiPaw.12G016000' => 'cil', 'CiPaw.14G041800' => 'cil', 'CiPaw.14G090000' => 'cil', 'ClCG00G005870' => 'cla', 'ClCG06G007160' => 'cla', 'ClCG06G007170' => 'cla', 'ClCG06G007180' => 'cla', 'ClCG07G007110' => 'cla', 'ClCG07G007160' => 'cla', 'ClCG07G007170' => 'cla', 'ClCG09G014600' => 'cla', 'COL.COLO4_00227' => 'col', 'COL.COLO4_15937' => 'col', 'COL.COLO4_15940' => 'col', 'COL.COLO4_15941' => 'col', 'COL.COLO4_15943' => 'col', 'COL.COLO4_20821' => 'col', 'COL.COLO4_25895' => 'col', 'COL.COLO4_25896' => 'col', 'COL.COLO4_25897' => 'col', 'COL.COLO4_25898' => 'col', 'COL.COLO4_25899' => 'col', 'COL.COLO4_25900' => 'col', 'COL.COLO4_25901' => 'col', 'COL.COLO4_25903' => 'col', 'COL.COLO4_30350' => 'col', 'Cpa.g.sc1584.1' => 'cpa', 'Cpa.g.sc44.17' => 'cpa', 'Cpa.g.sc44.18' => 'cpa', 'Cre06.g281250' => 'cre', 'CsaV3_2G012540' => 'csa', 'CsaV3_2G012550' => 'csa', 'CsaV3_2G012560' => 'csa', 'CSS0032050' => 'camsi', 'CSS0047456' => 'camsi', 'DCAR_030759' => 'dca', 'Dinv29819' => 'din', 'Duzib052G1047' => 'dzi', 'Duzib151G0707' => 'dzi', 'Duzib212G0708' => 'dzi', 'Duzib212G0719' => 'dzi', 'EL10Ac3g04936' => 'bvu', 'EL10Ac3g04960' => 'bvu', 'EL10Ac3g04961' => 'bvu', 'EL10Ac3g04963' => 'bvu', 'EL10Ac3g04964' => 'bvu', 'Eucgr.H02968' => 'egr', 'Eucgr.H02969' => 'egr', 'Eucgr.H02971' => 'egr', 'Eucgr.H02972' => 'egr', 'Eucgr.H02975' => 'egr', 'Eucgr.H02976' => 'egr', 'FAN01G2895' => 'fan', 'FAN01G2911' => 'fan', 'FAN06G0180' => 'fan', 'FAN06G1053' => 'fan', 'FAN06G1280' => 'fan', 'FAN06G2889' => 'fan', 'FAN06G4487' => 'fan', 'FAN12G0280' => 'fan', 'FAN12G3384' => 'fan', 'FAN17G0060' => 'fan', 'FAN17G3117' => 'fan', 'FAN21G3292' => 'fan', 'FAN22G1285' => 'fan', 'FAN22G2004' => 'fan', 'FvH4_4g04310' => 'fve', 'FvH4_4g04360' => 'fve', 'FvH4_4g04361' => 'fve', 'FvH4_7g18110' => 'fve', 'FvH4_7g18140' => 'fve', 'FvH4_7g18480' => 'fve', 'FvH4_7g18481' => 'fve', 'Glyma.10G189400' => 'gma', 'Glyma.20G201400' => 'gma', 'Gohir.A01G025200' => 'ghi', 'Gohir.A01G025600' => 'ghi', 'Gohir.A02G041801' => 'ghi', 'Gohir.A02G041802' => 'ghi', 'Gohir.A02G042000' => 'ghi', 'Gohir.A09G228050' => 'ghi', 'Gohir.A10G159666' => 'ghi', 'Gohir.D01G023400' => 'ghi', 'Gohir.D01G023409' => 'ghi', 'Gohir.D01G077101' => 'ghi', 'Gohir.D02G047550' => 'ghi', 'Gohir.D02G047600' => 'ghi', 'Gohir.D03G094750' => 'ghi', 'Gohir.D09G229100' => 'ghi', 'Gohir.D10G084600' => 'ghi', 'Gohir.D10G211900' => 'ghi', 'Gohir.D13G167111' => 'ghi', 'Gorai.002G025800' => 'gra', 'Gorai.002G026100' => 'gra', 'Gorai.005G052800' => 'gra', 'Gorai.005G052900' => 'gra', 'Gorai.006G251800' => 'gra', 'Gorai.011G092100' => 'gra', 'GSVIVG01027886001' => 'vvi', 'GSVIVG01027890001' => 'vvi', 'HanXRQChr02g0059351' => 'han', 'HanXRQChr12g0361741' => 'han', 'HanXRQChr12g0362451' => 'han', 'HanXRQChr12g0362471' => 'han', 'HanXRQChr12g0362501' => 'han', 'HanXRQChr12g0362671' => 'han', 'HanXRQChr12g0362681' => 'han', 'HanXRQChr12g0362691' => 'han', 'Haze_11439' => 'cav', 'Haze_11441' => 'cav', 'Haze_11442' => 'cav', 'Hma1.2p1_0267F.1_g107070' => 'hma', 'Hma1.2p1_0267F.1_g107080' => 'hma', 'Hma1.2p1_0385F.1_g141425' => 'hma', 'Hma1.2p1_0385F.1_g141430' => 'hma', 'Hma1.2p1_3458F.1_g336110' => 'hma', 'HPP92_009056' => 'vpl', 'HPP92_028141' => 'vpl', 'Hund03062' => 'sun', 'Hund03063' => 'sun', 'Hund03064' => 'sun', 'Hund03065' => 'sun', 'Hund03066' => 'sun', 'Hund03067' => 'sun', 'Hund03069' => 'sun', 'Hund03070' => 'sun', 'Hund03071' => 'sun', 'Hund03072' => 'sun', 'Hund03073' => 'sun', 'Hund03074' => 'sun', 'Hund03075' => 'sun', 'Hund03538' => 'sun', 'Lalb_Chr06g0169441' => 'lal', 'Lalb_Chr06g0169451' => 'lal', 'Lalb_Chr21g0312441' => 'lal', 'Lj5g0020800' => 'lja', 'Lj6C623G11' => 'lonja', 'Lj6C623T7' => 'lonja', 'Lsat_1_v5_gn_6_54580' => 'lsa', 'Lsat_1_v5_gn_6_54640' => 'lsa', 'Lsat_1_v5_gn_6_54780' => 'lsa', 'Lsat_1_v5_gn_6_56761' => 'lsa', 'Lsat_1_v5_gn_6_56781' => 'lsa', 'Lsat_1_v5_gn_6_56941' => 'lsa', 'Lsat_1_v5_gn_6_68821' => 'lsa', 'Manes.03G160700' => 'mes', 'Manes.03G160800' => 'mes', 'Manes.03G160850' => 'mes', 'Manes.03G160900' => 'mes', 'Manes.03G161000' => 'mes', 'Manes.03G161100' => 'mes', 'Manes.03G161200' => 'mes', 'Manes.03G161350' => 'mes', 'Manes.12G059300' => 'mes', 'Manes.15G043966' => 'mes', 'Mapoly0062s0039' => 'mpo', 'Mapoly1664s0001' => 'mpo', 'Mapoly3054s0001' => 'mpo', 'Mapoly4131s0001' => 'mpo', 'MBI07_g11125_MAGBIO' => 'mbi', 'MBI07_g14511_MAGBIO' => 'mbi', 'MBI07_g20243_MAGBIO' => 'mbi', 'MCO05G694' => 'mco', 'MD16G1224400' => 'mdo', 'Medtr1g044520' => 'mtr', 'Medtr1g073700' => 'mtr', 'MELO3C000522.2' => 'cme', 'MELO3C001398.2' => 'cme', 'MELO3C023030.2' => 'cme', 'MELO3C023031.2' => 'cme', 'MELO3C023032.2' => 'cme', 'MELO3C027187.2' => 'cme', 'MELO3C027751.2' => 'cme', 'MELO3C031245.2' => 'cme', 'Migut.G00492' => 'egut', 'Migut.N00291' => 'egut', 'MSTRG.24666' => 'ama', 'MSTRG.4158' => 'ama', 'Nitab4.5_0000049g0080' => 'nta', 'Nitab4.5_0000474g0040' => 'nta', 'Nitab4.5_0000483g0040' => 'nta', 'Nitab4.5_0001051g0160' => 'nta', 'Nitab4.5_0001425g0010' => 'nta', 'Nitab4.5_0001425g0020' => 'nta', 'Nitab4.5_0001425g0070' => 'nta', 'Nitab4.5_0001470g0020' => 'nta', 'Nitab4.5_0001470g0030' => 'nta', 'Nitab4.5_0001470g0040' => 'nta', 'Nitab4.5_0001470g0050' => 'nta', 'Nitab4.5_0001470g0060' => 'nta', 'Nitab4.5_0001470g0070' => 'nta', 'Nitab4.5_0001470g0080' => 'nta', 'Nitab4.5_0002293g0020' => 'nta', 'Nitab4.5_0002709g0090' => 'nta', 'Nitab4.5_0004167g0040' => 'nta', 'Nitab4.5_0005604g0010' => 'nta', 'Nitab4.5_0006069g0030' => 'nta', 'Nitab4.5_0009537g0010' => 'nta', 'Nitab4.5_0016872g0010' => 'nta', 'Nitab4.5_0019395g0010' => 'nta', 'Nitab4.5_0026646g0010' => 'nta', 'Nn1g02911' => 'nnu', 'Oeu055250.1' => 'oeu', 'Oeu055251.1' => 'oeu', 'Os07g0474600' => 'osa', 'Os12g0267100' => 'osa', 'Os12g0267200' => 'osa', 'Peaxi162Scf00013g00340' => 'pax', 'Peaxi162Scf00033g00261' => 'pax', 'Peaxi162Scf00033g00275' => 'pax', 'Peaxi162Scf00033g02610' => 'pax', 'Peaxi162Scf00033g02611' => 'pax', 'Peaxi162Scf00169g00317' => 'pax', 'Peaxi162Scf00169g00318' => 'pax', 'Peaxi162Scf00266g01010' => 'pax', 'Peaxi162Scf00300g00058' => 'pax', 'Peaxi162Scf00300g00518' => 'pax', 'Peaxi162Scf00321g00036' => 'pax', 'Peaxi162Scf00817g00119' => 'pax', 'Peaxi162Scf00817g00120' => 'pax', 'Peaxi162Scf01082g00025' => 'pax', 'Peaxi162Scf01082g00028' => 'pax', 'Peaxi162Scf01248g00314' => 'pax', 'Peaxi162Scf01248g00420' => 'pax', 'Peaxi162Scf01248g00421' => 'pax', 'PGR004G2782' => 'pgr', 'PGSC0003DMG400007263' => 'stu', 'PGSC0003DMG400007265' => 'stu', 'PGSC0003DMG400016834' => 'stu', 'PGSC0003DMG400017202' => 'stu', 'Phvul.008G158130' => 'pvu', 'Potri.008G170300' => 'ptr', 'Potri.010G067567' => 'ptr', 'Potri.010G067600' => 'ptr', 'Potri.010G067700' => 'ptr', 'Potri.010G067800' => 'ptr', 'Potri.010G067900' => 'ptr', 'Pp3c1_41090' => 'ppa', 'PRCOL_00005990' => 'pco', 'Prupe.1G045800' => 'ppe', 'Psat1g031880' => 'psa', 'Psat6g133480' => 'psa', 'PSO017G4741' => 'pso', 'PSO017G5938' => 'pso', 'PSO063G7051' => 'pso', 'QL06p020190' => 'qlo', 'QL06p020465' => 'qlo', 'QL06p020509' => 'qlo', 'QL06p020553' => 'qlo', 'QL06p020653' => 'qlo', 'QL06p020667' => 'qlo', 'RcHm_v2.0_Chr1g0325031' => 'rch', 'RcHm_v2.0_Chr1g0362281' => 'rch', 'RcHm_v2.0_Chr4g0390341' => 'rch', 'RcHm_v2.0_Chr4g0394761' => 'rch', 'RcHm_v2.0_Chr4g0394801' => 'rch', 'RcHm_v2.0_Chr4g0394871' => 'rch', 'RcHm_v2.0_Chr4g0394921' => 'rch', 'RcHm_v2.0_Chr4g0394931' => 'rch', 'RcHm_v2.0_Chr4g0394941' => 'rch', 'RcHm_v2.0_Chr4g0404311' => 'rch', 'RcHm_v2.0_Chr6g0258991' => 'rch', 'RcHm_v2.0_Chr6g0273911' => 'rch', 'RcHm_v2.0_Chr6g0288341' => 'rch', 'Rhsim04G0173900' => 'rsi', 'Rhsim04G0174000' => 'rsi', 'Rhsim04G0174200' => 'rsi', 'Rhsim04G0174300' => 'rsi', 'Sabra08G0130000' => 'sbr', 'Sabra08G0130100' => 'sbr', 'Sabra08G0130200' => 'sbr', 'Sabra10G0039500' => 'sbr', 'Sabra10G0039600' => 'sbr', 'Sabra10G0039700' => 'sbr', 'Sabra10G0039900' => 'sbr', 'SalBow1G2701' => 'sbo', 'SalBow3G4332' => 'sbo', 'SalBow8G0297' => 'sbo', 'SalBow8G1010' => 'sbo', 'SalBow8G1245' => 'sbo', 'SalBow8G2494' => 'sbo', 'SalBow8G2922' => 'sbo', 'SalBow8G3176' => 'sbo', 'SalBow8G3913' => 'sbo', 'SalBow8G4116' => 'sbo', 'SalBow8G4602' => 'sbo', 'SalBow8G5067' => 'sbo', 'Sc13g0005970' => 'sci', 'Sc13g0006090' => 'sci', 'Sc13g0006100' => 'sci', 'Sc13g0006110' => 'sci', 'Sed0000108' => 'sed', 'Sed0007860' => 'sed', 'Sed0021154' => 'sed', 'SEGI_06360' => 'sgi', 'SEGI_07006' => 'sgi', 'SEGI_11340' => 'sgi', 'SEGI_14689' => 'sgi', 'SEGI_20730' => 'sgi', 'SEGI_23794' => 'sgi', 'SEGI_32890' => 'sgi', 'SEGI_38188' => 'sgi', 'SGA_v2.0_scaffold31G12645' => 'sas', 'SGA_v2.0_scaffold67G22708' => 'sas', 'SMO356G0103' => 'smo', 'Solyc03g045140.4' => 'sly', 'Solyc03g045150.1' => 'sly', 'Solyc04g056440.3' => 'sly', 'Solyc04g056450.4' => 'sly', 'Solyc07g150128.1' => 'sly', 'Solyc09g090500.3' => 'sly', 'Solyc09g090510.3' => 'sly', 'Sopen03g009610' => 'spe', 'Sopen04g025330' => 'spe', 'Sopen04g025340' => 'spe', 'Sopen09g033420' => 'spe', 'Sopen09g033430' => 'spe', 'Sopen09g033440' => 'spe', 'Sp3g21120' => 'spa', 'Sp3g21130' => 'spa', 'Sp3g21140' => 'spa', 'Sp3g21180' => 'spa', 'SpUn0047_0010' => 'spa', 'SpUn0047_0020' => 'spa', 'TAR362G0672' => 'tar', 'THA.LOC104804765' => 'tha', 'THA.LOC104806424' => 'tha', 'THA.LOC104808649' => 'tha', 'THA.LOC104808651' => 'tha', 'THA.LOC104808652' => 'tha', 'THA.LOC104808653' => 'tha', 'Thecc.04G260700' => 'tca', 'Thecc.04G260800' => 'tca', 'Thecc.04G260900' => 'tca', 'Thecc.04G261000' => 'tca', 'Thecc.04G261200' => 'tca', 'Thecc.04G261300' => 'tca', 'Thecc.04G261400' => 'tca', 'Thecc.04G261500' => 'tca', 'Thecc.04G262900' => 'tca', 'Thhalv10020039m.g' => 'esa', 'Thhalv10020040m.g' => 'esa', 'Thhalv10020049m.g' => 'esa', 'Thhalv10022172m.g' => 'esa', 'TPR.G28756' => 'tpr', 'TPR.G28852' => 'tpr', 'TWI09G0985' => 'twi', 'TWI09G1386' => 'twi', 'unitig_749.g13515' => 'ugi', 'vmacro08534' => 'vma', 'vmacro08535' => 'vma', 'vmacro08536' => 'vma', 'VMungo0720G1851' => 'vmu', 'Zm00001eb041970' => 'zma', 'Zm00001eb102480' => 'zma', 'Zm00001eb164950' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001254' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001254' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001254' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001254' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001254', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '498', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p31550' => 'bna', 'A01p31560' => 'bna', 'A03p43290' => 'bna', 'A07p08890' => 'bna', 'A07p08980' => 'bna', 'A07p08990' => 'bna', 'Aa31LG8G9970' => 'aar', 'Aa31LG8G9980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.418' => 'aag', 'Actinidia35810' => 'ach', 'Ah.04g155380' => 'amhyb', 'Ah.13g072320' => 'amhyb', 'AL242U10010' => 'aly', 'AL242U10030' => 'aly', 'AL3G38120' => 'aly', 'AL3G38170' => 'aly', 'AL3G38190' => 'aly', 'Aqoxy2G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08UV73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M4LDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56Z1DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I33M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5I47GQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZS5X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60TT6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2G91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WEA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BHDE6S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AW8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ3JB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I255AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2BZ41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTU25K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2HI9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4GAS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNBV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6IN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX4IN3' => 'arhy', 'AT3G23460' => 'ath', 'AT3G23470' => 'ath', 'AT3G23480' => 'ath', 'AT3G23510' => 'ath', 'AT3G23530' => 'ath', 'ATR0736G203' => 'atr', 'Atru.chr4.1938' => 'acertr', 'Atru.chr4.1940' => 'acertr', 'Atru.chr6.2805' => 'acertr', 'AUR62002177' => 'cqu', 'AUR62015532' => 'cqu', 'AUR62016161' => 'cqu', 'AUR62035075' => 'cqu', 'BcaB03g14622' => 'bca', 'BcaB04g20446' => 'bca', 'BcaB06g26491' => 'bca', 'BcaB06g26493' => 'bca', 'BcaB06g26502' => 'bca', 'BcaC01g03370' => 'bca', 'BcaC01g03804' => 'bca', 'BcaC06g35528' => 'bca', 'BcaC06g35529' => 'bca', 'BcaC06g35537' => 'bca', 'BcaC09g49303' => 'bca', 'BolC1t03986H' => 'bol', 'BolC3t17123H' => 'bol', 'BolC3t17584H' => 'bol', 'BolC6t37463H' => 'bol', 'BolC7t41867H' => 'bol', 'BolC7t41884H' => 'bol', 'BolC7t41886H' => 'bol', 'BolC7t41887H' => 'bol', 'BolC7t41888H' => 'bol', 'BraA01t03285Z' => 'bra', 'BraA01t03286Z' => 'bra', 'BraA03t13468Z' => 'bra', 'BraA07t28679Z' => 'bra', 'BraA07t28688Z' => 'bra', 'BraA07t28689Z' => 'bra', 'BraA07t28692Z' => 'bra', 'BraA07t28694Z' => 'bra', 'C01p40250' => 'bna', 'C01p40290' => 'bna', 'C01p40320' => 'bna', 'C03p48450' => 'bna', 'C03p53200' => 'bna', 'C07p13720' => 'bna', 'C07p13820' => 'bna', 'C07p13830' => 'bna', 'C07p13850' => 'bna', 'C07p13860' => 'bna', 'CAN.G135.73' => 'can', 'CAN.G1801.3' => 'can', 'CAN.G220.58' => 'can', 'CAN.G220.59' => 'can', 'CAN.G220.60' => 'can', 'CAN.G220.61' => 'can', 'CAN.G220.62' => 'can', 'CAN.G220.63' => 'can', 'CAN.G220.64' => 'can', 'CAN.G220.65' => 'can', 'CAN.G220.92' => 'can', 'CAN.G524.36' => 'can', 'CAN.G588.66' => 'can', 'CAN.G674.11' => 'can', 'CAN.G681.64' => 'can', 'CAN.G681.65' => 'can', 'CAN.G681.66' => 'can', 'CAN.G681.68' => 'can', 'CAN.G681.69' => 'can', 'CANSAT21G0944' => 'cansat', 'CANSAT21G1419' => 'cansat', 'CANSAT25G3284' => 'cansat', 'CANSAT78G1771' => 'cansat', 'CARHR099420' => 'chi', 'CARHR099430' => 'chi', 'Carub.0003s2371' => 'cru', 'Carub.0003s2373' => 'cru', 'Ca_09809_v3' => 'car', 'Ca_11937_v3' => 'car', 'Ca_28724_v3' => 'car', 'Ca_30490_v3' => 'car', 'CBR_g31184' => 'cbr', 'Cc03_g05980' => 'ccan', 'CDE08G0370' => 'cde', 'CDE08G1432' => 'cde', 'CDE08G1481' => 'cde', 'Cfa014764' => 'cfa', 'Cfa014765' => 'cfa', 'Cfa025193' => 'cfa', 'Cfa025468' => 'cfa', 'Ciclev10004346m.g' => 'ccl', 'Ciclev10005536m.g' => 'ccl', 'Ciclev10005710m.g' => 'ccl', 'Ciclev10005727m.g' => 'ccl', 'Ciclev10007034m.g' => 'ccl', 'Ciclev10030464m.g' => 'ccl', 'CiPaw.01G179700' => 'cil', 'CiPaw.01G179800' => 'cil', 'CiPaw.01G180000' => 'cil', 'CiPaw.01G180100' => 'cil', 'CiPaw.01G180200' => 'cil', 'CiPaw.04G074600' => 'cil', 'CiPaw.11G113200' => 'cil', 'CiPaw.12G016000' => 'cil', 'CiPaw.14G041800' => 'cil', 'CiPaw.14G090000' => 'cil', 'ClCG00G005870' => 'cla', 'ClCG06G007160' => 'cla', 'ClCG06G007170' => 'cla', 'ClCG06G007180' => 'cla', 'ClCG07G007110' => 'cla', 'ClCG07G007160' => 'cla', 'ClCG07G007170' => 'cla', 'ClCG09G014600' => 'cla', 'COL.COLO4_00227' => 'col', 'COL.COLO4_15937' => 'col', 'COL.COLO4_15940' => 'col', 'COL.COLO4_15941' => 'col', 'COL.COLO4_15943' => 'col', 'COL.COLO4_20821' => 'col', 'COL.COLO4_25895' => 'col', 'COL.COLO4_25896' => 'col', 'COL.COLO4_25897' => 'col', 'COL.COLO4_25898' => 'col', 'COL.COLO4_25899' => 'col', 'COL.COLO4_25900' => 'col', 'COL.COLO4_25901' => 'col', 'COL.COLO4_25903' => 'col', 'COL.COLO4_30350' => 'col', 'Cpa.g.sc1584.1' => 'cpa', 'Cpa.g.sc44.17' => 'cpa', 'Cpa.g.sc44.18' => 'cpa', 'Cre06.g281250' => 'cre', 'CsaV3_2G012540' => 'csa', 'CsaV3_2G012550' => 'csa', 'CsaV3_2G012560' => 'csa', 'CSS0032050' => 'camsi', 'CSS0047456' => 'camsi', 'DCAR_030759' => 'dca', 'Dinv29819' => 'din', 'Duzib052G1047' => 'dzi', 'Duzib151G0707' => 'dzi', 'Duzib212G0708' => 'dzi', 'Duzib212G0719' => 'dzi', 'EL10Ac3g04936' => 'bvu', 'EL10Ac3g04960' => 'bvu', 'EL10Ac3g04961' => 'bvu', 'EL10Ac3g04963' => 'bvu', 'EL10Ac3g04964' => 'bvu', 'Eucgr.H02968' => 'egr', 'Eucgr.H02969' => 'egr', 'Eucgr.H02971' => 'egr', 'Eucgr.H02972' => 'egr', 'Eucgr.H02975' => 'egr', 'Eucgr.H02976' => 'egr', 'FAN01G2895' => 'fan', 'FAN01G2911' => 'fan', 'FAN06G0180' => 'fan', 'FAN06G1053' => 'fan', 'FAN06G1280' => 'fan', 'FAN06G2889' => 'fan', 'FAN06G4487' => 'fan', 'FAN12G0280' => 'fan', 'FAN12G3384' => 'fan', 'FAN17G0060' => 'fan', 'FAN17G3117' => 'fan', 'FAN21G3292' => 'fan', 'FAN22G1285' => 'fan', 'FAN22G2004' => 'fan', 'FvH4_4g04310' => 'fve', 'FvH4_4g04360' => 'fve', 'FvH4_4g04361' => 'fve', 'FvH4_7g18110' => 'fve', 'FvH4_7g18140' => 'fve', 'FvH4_7g18480' => 'fve', 'FvH4_7g18481' => 'fve', 'Glyma.10G189400' => 'gma', 'Glyma.20G201400' => 'gma', 'Gohir.A01G025200' => 'ghi', 'Gohir.A01G025600' => 'ghi', 'Gohir.A02G041801' => 'ghi', 'Gohir.A02G041802' => 'ghi', 'Gohir.A02G042000' => 'ghi', 'Gohir.A09G228050' => 'ghi', 'Gohir.A10G159666' => 'ghi', 'Gohir.D01G023400' => 'ghi', 'Gohir.D01G023409' => 'ghi', 'Gohir.D01G077101' => 'ghi', 'Gohir.D02G047550' => 'ghi', 'Gohir.D02G047600' => 'ghi', 'Gohir.D03G094750' => 'ghi', 'Gohir.D09G229100' => 'ghi', 'Gohir.D10G084600' => 'ghi', 'Gohir.D10G211900' => 'ghi', 'Gohir.D13G167111' => 'ghi', 'Gorai.002G025800' => 'gra', 'Gorai.002G026100' => 'gra', 'Gorai.005G052800' => 'gra', 'Gorai.005G052900' => 'gra', 'Gorai.006G251800' => 'gra', 'Gorai.011G092100' => 'gra', 'GSVIVG01027886001' => 'vvi', 'GSVIVG01027890001' => 'vvi', 'HanXRQChr02g0059351' => 'han', 'HanXRQChr12g0361741' => 'han', 'HanXRQChr12g0362451' => 'han', 'HanXRQChr12g0362471' => 'han', 'HanXRQChr12g0362501' => 'han', 'HanXRQChr12g0362671' => 'han', 'HanXRQChr12g0362681' => 'han', 'HanXRQChr12g0362691' => 'han', 'Haze_11439' => 'cav', 'Haze_11441' => 'cav', 'Haze_11442' => 'cav', 'Hma1.2p1_0267F.1_g107070' => 'hma', 'Hma1.2p1_0267F.1_g107080' => 'hma', 'Hma1.2p1_0385F.1_g141425' => 'hma', 'Hma1.2p1_0385F.1_g141430' => 'hma', 'Hma1.2p1_3458F.1_g336110' => 'hma', 'HPP92_009056' => 'vpl', 'HPP92_028141' => 'vpl', 'Hund03062' => 'sun', 'Hund03063' => 'sun', 'Hund03064' => 'sun', 'Hund03065' => 'sun', 'Hund03066' => 'sun', 'Hund03067' => 'sun', 'Hund03069' => 'sun', 'Hund03070' => 'sun', 'Hund03071' => 'sun', 'Hund03072' => 'sun', 'Hund03073' => 'sun', 'Hund03074' => 'sun', 'Hund03075' => 'sun', 'Hund03538' => 'sun', 'Lalb_Chr06g0169441' => 'lal', 'Lalb_Chr06g0169451' => 'lal', 'Lalb_Chr21g0312441' => 'lal', 'Lj5g0020800' => 'lja', 'Lj6C623G11' => 'lonja', 'Lj6C623T7' => 'lonja', 'Lsat_1_v5_gn_6_54580' => 'lsa', 'Lsat_1_v5_gn_6_54640' => 'lsa', 'Lsat_1_v5_gn_6_54780' => 'lsa', 'Lsat_1_v5_gn_6_56761' => 'lsa', 'Lsat_1_v5_gn_6_56781' => 'lsa', 'Lsat_1_v5_gn_6_56941' => 'lsa', 'Lsat_1_v5_gn_6_68821' => 'lsa', 'Manes.03G160700' => 'mes', 'Manes.03G160800' => 'mes', 'Manes.03G160850' => 'mes', 'Manes.03G160900' => 'mes', 'Manes.03G161000' => 'mes', 'Manes.03G161100' => 'mes', 'Manes.03G161200' => 'mes', 'Manes.03G161350' => 'mes', 'Manes.12G059300' => 'mes', 'Manes.15G043966' => 'mes', 'Mapoly0062s0039' => 'mpo', 'Mapoly1664s0001' => 'mpo', 'Mapoly3054s0001' => 'mpo', 'Mapoly4131s0001' => 'mpo', 'MBI07_g11125_MAGBIO' => 'mbi', 'MBI07_g14511_MAGBIO' => 'mbi', 'MBI07_g20243_MAGBIO' => 'mbi', 'MCO05G694' => 'mco', 'MD16G1224400' => 'mdo', 'Medtr1g044520' => 'mtr', 'Medtr1g073700' => 'mtr', 'MELO3C000522.2' => 'cme', 'MELO3C001398.2' => 'cme', 'MELO3C023030.2' => 'cme', 'MELO3C023031.2' => 'cme', 'MELO3C023032.2' => 'cme', 'MELO3C027187.2' => 'cme', 'MELO3C027751.2' => 'cme', 'MELO3C031245.2' => 'cme', 'Migut.G00492' => 'egut', 'Migut.N00291' => 'egut', 'MSTRG.24666' => 'ama', 'MSTRG.4158' => 'ama', 'Nitab4.5_0000049g0080' => 'nta', 'Nitab4.5_0000474g0040' => 'nta', 'Nitab4.5_0000483g0040' => 'nta', 'Nitab4.5_0001051g0160' => 'nta', 'Nitab4.5_0001425g0010' => 'nta', 'Nitab4.5_0001425g0020' => 'nta', 'Nitab4.5_0001425g0070' => 'nta', 'Nitab4.5_0001470g0020' => 'nta', 'Nitab4.5_0001470g0030' => 'nta', 'Nitab4.5_0001470g0040' => 'nta', 'Nitab4.5_0001470g0050' => 'nta', 'Nitab4.5_0001470g0060' => 'nta', 'Nitab4.5_0001470g0070' => 'nta', 'Nitab4.5_0001470g0080' => 'nta', 'Nitab4.5_0002293g0020' => 'nta', 'Nitab4.5_0002709g0090' => 'nta', 'Nitab4.5_0004167g0040' => 'nta', 'Nitab4.5_0005604g0010' => 'nta', 'Nitab4.5_0006069g0030' => 'nta', 'Nitab4.5_0009537g0010' => 'nta', 'Nitab4.5_0016872g0010' => 'nta', 'Nitab4.5_0019395g0010' => 'nta', 'Nitab4.5_0026646g0010' => 'nta', 'Nn1g02911' => 'nnu', 'Oeu055250.1' => 'oeu', 'Oeu055251.1' => 'oeu', 'Os07g0474600' => 'osa', 'Os12g0267100' => 'osa', 'Os12g0267200' => 'osa', 'Peaxi162Scf00013g00340' => 'pax', 'Peaxi162Scf00033g00261' => 'pax', 'Peaxi162Scf00033g00275' => 'pax', 'Peaxi162Scf00033g02610' => 'pax', 'Peaxi162Scf00033g02611' => 'pax', 'Peaxi162Scf00169g00317' => 'pax', 'Peaxi162Scf00169g00318' => 'pax', 'Peaxi162Scf00266g01010' => 'pax', 'Peaxi162Scf00300g00058' => 'pax', 'Peaxi162Scf00300g00518' => 'pax', 'Peaxi162Scf00321g00036' => 'pax', 'Peaxi162Scf00817g00119' => 'pax', 'Peaxi162Scf00817g00120' => 'pax', 'Peaxi162Scf01082g00025' => 'pax', 'Peaxi162Scf01082g00028' => 'pax', 'Peaxi162Scf01248g00314' => 'pax', 'Peaxi162Scf01248g00420' => 'pax', 'Peaxi162Scf01248g00421' => 'pax', 'PGR004G2782' => 'pgr', 'PGSC0003DMG400007263' => 'stu', 'PGSC0003DMG400007265' => 'stu', 'PGSC0003DMG400016834' => 'stu', 'PGSC0003DMG400017202' => 'stu', 'Phvul.008G158130' => 'pvu', 'Potri.008G170300' => 'ptr', 'Potri.010G067567' => 'ptr', 'Potri.010G067600' => 'ptr', 'Potri.010G067700' => 'ptr', 'Potri.010G067800' => 'ptr', 'Potri.010G067900' => 'ptr', 'Pp3c1_41090' => 'ppa', 'PRCOL_00005990' => 'pco', 'Prupe.1G045800' => 'ppe', 'Psat1g031880' => 'psa', 'Psat6g133480' => 'psa', 'PSO017G4741' => 'pso', 'PSO017G5938' => 'pso', 'PSO063G7051' => 'pso', 'QL06p020190' => 'qlo', 'QL06p020465' => 'qlo', 'QL06p020509' => 'qlo', 'QL06p020553' => 'qlo', 'QL06p020653' => 'qlo', 'QL06p020667' => 'qlo', 'RcHm_v2.0_Chr1g0325031' => 'rch', 'RcHm_v2.0_Chr1g0362281' => 'rch', 'RcHm_v2.0_Chr4g0390341' => 'rch', 'RcHm_v2.0_Chr4g0394761' => 'rch', 'RcHm_v2.0_Chr4g0394801' => 'rch', 'RcHm_v2.0_Chr4g0394871' => 'rch', 'RcHm_v2.0_Chr4g0394921' => 'rch', 'RcHm_v2.0_Chr4g0394931' => 'rch', 'RcHm_v2.0_Chr4g0394941' => 'rch', 'RcHm_v2.0_Chr4g0404311' => 'rch', 'RcHm_v2.0_Chr6g0258991' => 'rch', 'RcHm_v2.0_Chr6g0273911' => 'rch', 'RcHm_v2.0_Chr6g0288341' => 'rch', 'Rhsim04G0173900' => 'rsi', 'Rhsim04G0174000' => 'rsi', 'Rhsim04G0174200' => 'rsi', 'Rhsim04G0174300' => 'rsi', 'Sabra08G0130000' => 'sbr', 'Sabra08G0130100' => 'sbr', 'Sabra08G0130200' => 'sbr', 'Sabra10G0039500' => 'sbr', 'Sabra10G0039600' => 'sbr', 'Sabra10G0039700' => 'sbr', 'Sabra10G0039900' => 'sbr', 'SalBow1G2701' => 'sbo', 'SalBow3G4332' => 'sbo', 'SalBow8G0297' => 'sbo', 'SalBow8G1010' => 'sbo', 'SalBow8G1245' => 'sbo', 'SalBow8G2494' => 'sbo', 'SalBow8G2922' => 'sbo', 'SalBow8G3176' => 'sbo', 'SalBow8G3913' => 'sbo', 'SalBow8G4116' => 'sbo', 'SalBow8G4602' => 'sbo', 'SalBow8G5067' => 'sbo', 'Sc13g0005970' => 'sci', 'Sc13g0006090' => 'sci', 'Sc13g0006100' => 'sci', 'Sc13g0006110' => 'sci', 'Sed0000108' => 'sed', 'Sed0007860' => 'sed', 'Sed0021154' => 'sed', 'SEGI_06360' => 'sgi', 'SEGI_07006' => 'sgi', 'SEGI_11340' => 'sgi', 'SEGI_14689' => 'sgi', 'SEGI_20730' => 'sgi', 'SEGI_23794' => 'sgi', 'SEGI_32890' => 'sgi', 'SEGI_38188' => 'sgi', 'SGA_v2.0_scaffold31G12645' => 'sas', 'SGA_v2.0_scaffold67G22708' => 'sas', 'SMO356G0103' => 'smo', 'Solyc03g045140.4' => 'sly', 'Solyc03g045150.1' => 'sly', 'Solyc04g056440.3' => 'sly', 'Solyc04g056450.4' => 'sly', 'Solyc07g150128.1' => 'sly', 'Solyc09g090500.3' => 'sly', 'Solyc09g090510.3' => 'sly', 'Sopen03g009610' => 'spe', 'Sopen04g025330' => 'spe', 'Sopen04g025340' => 'spe', 'Sopen09g033420' => 'spe', 'Sopen09g033430' => 'spe', 'Sopen09g033440' => 'spe', 'Sp3g21120' => 'spa', 'Sp3g21130' => 'spa', 'Sp3g21140' => 'spa', 'Sp3g21180' => 'spa', 'SpUn0047_0010' => 'spa', 'SpUn0047_0020' => 'spa', 'TAR362G0672' => 'tar', 'THA.LOC104804765' => 'tha', 'THA.LOC104806424' => 'tha', 'THA.LOC104808649' => 'tha', 'THA.LOC104808651' => 'tha', 'THA.LOC104808652' => 'tha', 'THA.LOC104808653' => 'tha', 'Thecc.04G260700' => 'tca', 'Thecc.04G260800' => 'tca', 'Thecc.04G260900' => 'tca', 'Thecc.04G261000' => 'tca', 'Thecc.04G261200' => 'tca', 'Thecc.04G261300' => 'tca', 'Thecc.04G261400' => 'tca', 'Thecc.04G261500' => 'tca', 'Thecc.04G262900' => 'tca', 'Thhalv10020039m.g' => 'esa', 'Thhalv10020040m.g' => 'esa', 'Thhalv10020049m.g' => 'esa', 'Thhalv10022172m.g' => 'esa', 'TPR.G28756' => 'tpr', 'TPR.G28852' => 'tpr', 'TWI09G0985' => 'twi', 'TWI09G1386' => 'twi', 'unitig_749.g13515' => 'ugi', 'vmacro08534' => 'vma', 'vmacro08535' => 'vma', 'vmacro08536' => 'vma', 'VMungo0720G1851' => 'vmu', 'Zm00001eb041970' => 'zma', 'Zm00001eb102480' => 'zma', 'Zm00001eb164950' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001254', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001254' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001254', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '498', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001254' ) ), 'genes' => array( 'A01p31550' => 'bna', 'A01p31560' => 'bna', 'A03p43290' => 'bna', 'A07p08890' => 'bna', 'A07p08980' => 'bna', 'A07p08990' => 'bna', 'Aa31LG8G9970' => 'aar', 'Aa31LG8G9980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.418' => 'aag', 'Actinidia35810' => 'ach', 'Ah.04g155380' => 'amhyb', 'Ah.13g072320' => 'amhyb', 'AL242U10010' => 'aly', 'AL242U10030' => 'aly', 'AL3G38120' => 'aly', 'AL3G38170' => 'aly', 'AL3G38190' => 'aly', 'Aqoxy2G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08UV73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M4LDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56Z1DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I33M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5I47GQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZS5X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60TT6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2G91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WEA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BHDE6S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AW8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ3JB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I255AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2BZ41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTU25K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2HI9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4GAS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNBV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6IN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX4IN3' => 'arhy', 'AT3G23460' => 'ath', 'AT3G23470' => 'ath', 'AT3G23480' => 'ath', 'AT3G23510' => 'ath', 'AT3G23530' => 'ath', 'ATR0736G203' => 'atr', 'Atru.chr4.1938' => 'acertr', 'Atru.chr4.1940' => 'acertr', 'Atru.chr6.2805' => 'acertr', 'AUR62002177' => 'cqu', 'AUR62015532' => 'cqu', 'AUR62016161' => 'cqu', 'AUR62035075' => 'cqu', 'BcaB03g14622' => 'bca', 'BcaB04g20446' => 'bca', 'BcaB06g26491' => 'bca', 'BcaB06g26493' => 'bca', 'BcaB06g26502' => 'bca', 'BcaC01g03370' => 'bca', 'BcaC01g03804' => 'bca', 'BcaC06g35528' => 'bca', 'BcaC06g35529' => 'bca', 'BcaC06g35537' => 'bca', 'BcaC09g49303' => 'bca', 'BolC1t03986H' => 'bol', 'BolC3t17123H' => 'bol', 'BolC3t17584H' => 'bol', 'BolC6t37463H' => 'bol', 'BolC7t41867H' => 'bol', 'BolC7t41884H' => 'bol', 'BolC7t41886H' => 'bol', 'BolC7t41887H' => 'bol', 'BolC7t41888H' => 'bol', 'BraA01t03285Z' => 'bra', 'BraA01t03286Z' => 'bra', 'BraA03t13468Z' => 'bra', 'BraA07t28679Z' => 'bra', 'BraA07t28688Z' => 'bra', 'BraA07t28689Z' => 'bra', 'BraA07t28692Z' => 'bra', 'BraA07t28694Z' => 'bra', 'C01p40250' => 'bna', 'C01p40290' => 'bna', 'C01p40320' => 'bna', 'C03p48450' => 'bna', 'C03p53200' => 'bna', 'C07p13720' => 'bna', 'C07p13820' => 'bna', 'C07p13830' => 'bna', 'C07p13850' => 'bna', 'C07p13860' => 'bna', 'CAN.G135.73' => 'can', 'CAN.G1801.3' => 'can', 'CAN.G220.58' => 'can', 'CAN.G220.59' => 'can', 'CAN.G220.60' => 'can', 'CAN.G220.61' => 'can', 'CAN.G220.62' => 'can', 'CAN.G220.63' => 'can', 'CAN.G220.64' => 'can', 'CAN.G220.65' => 'can', 'CAN.G220.92' => 'can', 'CAN.G524.36' => 'can', 'CAN.G588.66' => 'can', 'CAN.G674.11' => 'can', 'CAN.G681.64' => 'can', 'CAN.G681.65' => 'can', 'CAN.G681.66' => 'can', 'CAN.G681.68' => 'can', 'CAN.G681.69' => 'can', 'CANSAT21G0944' => 'cansat', 'CANSAT21G1419' => 'cansat', 'CANSAT25G3284' => 'cansat', 'CANSAT78G1771' => 'cansat', 'CARHR099420' => 'chi', 'CARHR099430' => 'chi', 'Carub.0003s2371' => 'cru', 'Carub.0003s2373' => 'cru', 'Ca_09809_v3' => 'car', 'Ca_11937_v3' => 'car', 'Ca_28724_v3' => 'car', 'Ca_30490_v3' => 'car', 'CBR_g31184' => 'cbr', 'Cc03_g05980' => 'ccan', 'CDE08G0370' => 'cde', 'CDE08G1432' => 'cde', 'CDE08G1481' => 'cde', 'Cfa014764' => 'cfa', 'Cfa014765' => 'cfa', 'Cfa025193' => 'cfa', 'Cfa025468' => 'cfa', 'Ciclev10004346m.g' => 'ccl', 'Ciclev10005536m.g' => 'ccl', 'Ciclev10005710m.g' => 'ccl', 'Ciclev10005727m.g' => 'ccl', 'Ciclev10007034m.g' => 'ccl', 'Ciclev10030464m.g' => 'ccl', 'CiPaw.01G179700' => 'cil', 'CiPaw.01G179800' => 'cil', 'CiPaw.01G180000' => 'cil', 'CiPaw.01G180100' => 'cil', 'CiPaw.01G180200' => 'cil', 'CiPaw.04G074600' => 'cil', 'CiPaw.11G113200' => 'cil', 'CiPaw.12G016000' => 'cil', 'CiPaw.14G041800' => 'cil', 'CiPaw.14G090000' => 'cil', 'ClCG00G005870' => 'cla', 'ClCG06G007160' => 'cla', 'ClCG06G007170' => 'cla', 'ClCG06G007180' => 'cla', 'ClCG07G007110' => 'cla', 'ClCG07G007160' => 'cla', 'ClCG07G007170' => 'cla', 'ClCG09G014600' => 'cla', 'COL.COLO4_00227' => 'col', 'COL.COLO4_15937' => 'col', 'COL.COLO4_15940' => 'col', 'COL.COLO4_15941' => 'col', 'COL.COLO4_15943' => 'col', 'COL.COLO4_20821' => 'col', 'COL.COLO4_25895' => 'col', 'COL.COLO4_25896' => 'col', 'COL.COLO4_25897' => 'col', 'COL.COLO4_25898' => 'col', 'COL.COLO4_25899' => 'col', 'COL.COLO4_25900' => 'col', 'COL.COLO4_25901' => 'col', 'COL.COLO4_25903' => 'col', 'COL.COLO4_30350' => 'col', 'Cpa.g.sc1584.1' => 'cpa', 'Cpa.g.sc44.17' => 'cpa', 'Cpa.g.sc44.18' => 'cpa', 'Cre06.g281250' => 'cre', 'CsaV3_2G012540' => 'csa', 'CsaV3_2G012550' => 'csa', 'CsaV3_2G012560' => 'csa', 'CSS0032050' => 'camsi', 'CSS0047456' => 'camsi', 'DCAR_030759' => 'dca', 'Dinv29819' => 'din', 'Duzib052G1047' => 'dzi', 'Duzib151G0707' => 'dzi', 'Duzib212G0708' => 'dzi', 'Duzib212G0719' => 'dzi', 'EL10Ac3g04936' => 'bvu', 'EL10Ac3g04960' => 'bvu', 'EL10Ac3g04961' => 'bvu', 'EL10Ac3g04963' => 'bvu', 'EL10Ac3g04964' => 'bvu', 'Eucgr.H02968' => 'egr', 'Eucgr.H02969' => 'egr', 'Eucgr.H02971' => 'egr', 'Eucgr.H02972' => 'egr', 'Eucgr.H02975' => 'egr', 'Eucgr.H02976' => 'egr', 'FAN01G2895' => 'fan', 'FAN01G2911' => 'fan', 'FAN06G0180' => 'fan', 'FAN06G1053' => 'fan', 'FAN06G1280' => 'fan', 'FAN06G2889' => 'fan', 'FAN06G4487' => 'fan', 'FAN12G0280' => 'fan', 'FAN12G3384' => 'fan', 'FAN17G0060' => 'fan', 'FAN17G3117' => 'fan', 'FAN21G3292' => 'fan', 'FAN22G1285' => 'fan', 'FAN22G2004' => 'fan', 'FvH4_4g04310' => 'fve', 'FvH4_4g04360' => 'fve', 'FvH4_4g04361' => 'fve', 'FvH4_7g18110' => 'fve', 'FvH4_7g18140' => 'fve', 'FvH4_7g18480' => 'fve', 'FvH4_7g18481' => 'fve', 'Glyma.10G189400' => 'gma', 'Glyma.20G201400' => 'gma', 'Gohir.A01G025200' => 'ghi', 'Gohir.A01G025600' => 'ghi', 'Gohir.A02G041801' => 'ghi', 'Gohir.A02G041802' => 'ghi', 'Gohir.A02G042000' => 'ghi', 'Gohir.A09G228050' => 'ghi', 'Gohir.A10G159666' => 'ghi', 'Gohir.D01G023400' => 'ghi', 'Gohir.D01G023409' => 'ghi', 'Gohir.D01G077101' => 'ghi', 'Gohir.D02G047550' => 'ghi', 'Gohir.D02G047600' => 'ghi', 'Gohir.D03G094750' => 'ghi', 'Gohir.D09G229100' => 'ghi', 'Gohir.D10G084600' => 'ghi', 'Gohir.D10G211900' => 'ghi', 'Gohir.D13G167111' => 'ghi', 'Gorai.002G025800' => 'gra', 'Gorai.002G026100' => 'gra', 'Gorai.005G052800' => 'gra', 'Gorai.005G052900' => 'gra', 'Gorai.006G251800' => 'gra', 'Gorai.011G092100' => 'gra', 'GSVIVG01027886001' => 'vvi', 'GSVIVG01027890001' => 'vvi', 'HanXRQChr02g0059351' => 'han', 'HanXRQChr12g0361741' => 'han', 'HanXRQChr12g0362451' => 'han', 'HanXRQChr12g0362471' => 'han', 'HanXRQChr12g0362501' => 'han', 'HanXRQChr12g0362671' => 'han', 'HanXRQChr12g0362681' => 'han', 'HanXRQChr12g0362691' => 'han', 'Haze_11439' => 'cav', 'Haze_11441' => 'cav', 'Haze_11442' => 'cav', 'Hma1.2p1_0267F.1_g107070' => 'hma', 'Hma1.2p1_0267F.1_g107080' => 'hma', 'Hma1.2p1_0385F.1_g141425' => 'hma', 'Hma1.2p1_0385F.1_g141430' => 'hma', 'Hma1.2p1_3458F.1_g336110' => 'hma', 'HPP92_009056' => 'vpl', 'HPP92_028141' => 'vpl', 'Hund03062' => 'sun', 'Hund03063' => 'sun', 'Hund03064' => 'sun', 'Hund03065' => 'sun', 'Hund03066' => 'sun', 'Hund03067' => 'sun', 'Hund03069' => 'sun', 'Hund03070' => 'sun', 'Hund03071' => 'sun', 'Hund03072' => 'sun', 'Hund03073' => 'sun', 'Hund03074' => 'sun', 'Hund03075' => 'sun', 'Hund03538' => 'sun', 'Lalb_Chr06g0169441' => 'lal', 'Lalb_Chr06g0169451' => 'lal', 'Lalb_Chr21g0312441' => 'lal', 'Lj5g0020800' => 'lja', 'Lj6C623G11' => 'lonja', 'Lj6C623T7' => 'lonja', 'Lsat_1_v5_gn_6_54580' => 'lsa', 'Lsat_1_v5_gn_6_54640' => 'lsa', 'Lsat_1_v5_gn_6_54780' => 'lsa', 'Lsat_1_v5_gn_6_56761' => 'lsa', 'Lsat_1_v5_gn_6_56781' => 'lsa', 'Lsat_1_v5_gn_6_56941' => 'lsa', 'Lsat_1_v5_gn_6_68821' => 'lsa', 'Manes.03G160700' => 'mes', 'Manes.03G160800' => 'mes', 'Manes.03G160850' => 'mes', 'Manes.03G160900' => 'mes', 'Manes.03G161000' => 'mes', 'Manes.03G161100' => 'mes', 'Manes.03G161200' => 'mes', 'Manes.03G161350' => 'mes', 'Manes.12G059300' => 'mes', 'Manes.15G043966' => 'mes', 'Mapoly0062s0039' => 'mpo', 'Mapoly1664s0001' => 'mpo', 'Mapoly3054s0001' => 'mpo', 'Mapoly4131s0001' => 'mpo', 'MBI07_g11125_MAGBIO' => 'mbi', 'MBI07_g14511_MAGBIO' => 'mbi', 'MBI07_g20243_MAGBIO' => 'mbi', 'MCO05G694' => 'mco', 'MD16G1224400' => 'mdo', 'Medtr1g044520' => 'mtr', 'Medtr1g073700' => 'mtr', 'MELO3C000522.2' => 'cme', 'MELO3C001398.2' => 'cme', 'MELO3C023030.2' => 'cme', 'MELO3C023031.2' => 'cme', 'MELO3C023032.2' => 'cme', 'MELO3C027187.2' => 'cme', 'MELO3C027751.2' => 'cme', 'MELO3C031245.2' => 'cme', 'Migut.G00492' => 'egut', 'Migut.N00291' => 'egut', 'MSTRG.24666' => 'ama', 'MSTRG.4158' => 'ama', 'Nitab4.5_0000049g0080' => 'nta', 'Nitab4.5_0000474g0040' => 'nta', 'Nitab4.5_0000483g0040' => 'nta', 'Nitab4.5_0001051g0160' => 'nta', 'Nitab4.5_0001425g0010' => 'nta', 'Nitab4.5_0001425g0020' => 'nta', 'Nitab4.5_0001425g0070' => 'nta', 'Nitab4.5_0001470g0020' => 'nta', 'Nitab4.5_0001470g0030' => 'nta', 'Nitab4.5_0001470g0040' => 'nta', 'Nitab4.5_0001470g0050' => 'nta', 'Nitab4.5_0001470g0060' => 'nta', 'Nitab4.5_0001470g0070' => 'nta', 'Nitab4.5_0001470g0080' => 'nta', 'Nitab4.5_0002293g0020' => 'nta', 'Nitab4.5_0002709g0090' => 'nta', 'Nitab4.5_0004167g0040' => 'nta', 'Nitab4.5_0005604g0010' => 'nta', 'Nitab4.5_0006069g0030' => 'nta', 'Nitab4.5_0009537g0010' => 'nta', 'Nitab4.5_0016872g0010' => 'nta', 'Nitab4.5_0019395g0010' => 'nta', 'Nitab4.5_0026646g0010' => 'nta', 'Nn1g02911' => 'nnu', 'Oeu055250.1' => 'oeu', 'Oeu055251.1' => 'oeu', 'Os07g0474600' => 'osa', 'Os12g0267100' => 'osa', 'Os12g0267200' => 'osa', 'Peaxi162Scf00013g00340' => 'pax', 'Peaxi162Scf00033g00261' => 'pax', 'Peaxi162Scf00033g00275' => 'pax', 'Peaxi162Scf00033g02610' => 'pax', 'Peaxi162Scf00033g02611' => 'pax', 'Peaxi162Scf00169g00317' => 'pax', 'Peaxi162Scf00169g00318' => 'pax', 'Peaxi162Scf00266g01010' => 'pax', 'Peaxi162Scf00300g00058' => 'pax', 'Peaxi162Scf00300g00518' => 'pax', 'Peaxi162Scf00321g00036' => 'pax', 'Peaxi162Scf00817g00119' => 'pax', 'Peaxi162Scf00817g00120' => 'pax', 'Peaxi162Scf01082g00025' => 'pax', 'Peaxi162Scf01082g00028' => 'pax', 'Peaxi162Scf01248g00314' => 'pax', 'Peaxi162Scf01248g00420' => 'pax', 'Peaxi162Scf01248g00421' => 'pax', 'PGR004G2782' => 'pgr', 'PGSC0003DMG400007263' => 'stu', 'PGSC0003DMG400007265' => 'stu', 'PGSC0003DMG400016834' => 'stu', 'PGSC0003DMG400017202' => 'stu', 'Phvul.008G158130' => 'pvu', 'Potri.008G170300' => 'ptr', 'Potri.010G067567' => 'ptr', 'Potri.010G067600' => 'ptr', 'Potri.010G067700' => 'ptr', 'Potri.010G067800' => 'ptr', 'Potri.010G067900' => 'ptr', 'Pp3c1_41090' => 'ppa', 'PRCOL_00005990' => 'pco', 'Prupe.1G045800' => 'ppe', 'Psat1g031880' => 'psa', 'Psat6g133480' => 'psa', 'PSO017G4741' => 'pso', 'PSO017G5938' => 'pso', 'PSO063G7051' => 'pso', 'QL06p020190' => 'qlo', 'QL06p020465' => 'qlo', 'QL06p020509' => 'qlo', 'QL06p020553' => 'qlo', 'QL06p020653' => 'qlo', 'QL06p020667' => 'qlo', 'RcHm_v2.0_Chr1g0325031' => 'rch', 'RcHm_v2.0_Chr1g0362281' => 'rch', 'RcHm_v2.0_Chr4g0390341' => 'rch', 'RcHm_v2.0_Chr4g0394761' => 'rch', 'RcHm_v2.0_Chr4g0394801' => 'rch', 'RcHm_v2.0_Chr4g0394871' => 'rch', 'RcHm_v2.0_Chr4g0394921' => 'rch', 'RcHm_v2.0_Chr4g0394931' => 'rch', 'RcHm_v2.0_Chr4g0394941' => 'rch', 'RcHm_v2.0_Chr4g0404311' => 'rch', 'RcHm_v2.0_Chr6g0258991' => 'rch', 'RcHm_v2.0_Chr6g0273911' => 'rch', 'RcHm_v2.0_Chr6g0288341' => 'rch', 'Rhsim04G0173900' => 'rsi', 'Rhsim04G0174000' => 'rsi', 'Rhsim04G0174200' => 'rsi', 'Rhsim04G0174300' => 'rsi', 'Sabra08G0130000' => 'sbr', 'Sabra08G0130100' => 'sbr', 'Sabra08G0130200' => 'sbr', 'Sabra10G0039500' => 'sbr', 'Sabra10G0039600' => 'sbr', 'Sabra10G0039700' => 'sbr', 'Sabra10G0039900' => 'sbr', 'SalBow1G2701' => 'sbo', 'SalBow3G4332' => 'sbo', 'SalBow8G0297' => 'sbo', 'SalBow8G1010' => 'sbo', 'SalBow8G1245' => 'sbo', 'SalBow8G2494' => 'sbo', 'SalBow8G2922' => 'sbo', 'SalBow8G3176' => 'sbo', 'SalBow8G3913' => 'sbo', 'SalBow8G4116' => 'sbo', 'SalBow8G4602' => 'sbo', 'SalBow8G5067' => 'sbo', 'Sc13g0005970' => 'sci', 'Sc13g0006090' => 'sci', 'Sc13g0006100' => 'sci', 'Sc13g0006110' => 'sci', 'Sed0000108' => 'sed', 'Sed0007860' => 'sed', 'Sed0021154' => 'sed', 'SEGI_06360' => 'sgi', 'SEGI_07006' => 'sgi', 'SEGI_11340' => 'sgi', 'SEGI_14689' => 'sgi', 'SEGI_20730' => 'sgi', 'SEGI_23794' => 'sgi', 'SEGI_32890' => 'sgi', 'SEGI_38188' => 'sgi', 'SGA_v2.0_scaffold31G12645' => 'sas', 'SGA_v2.0_scaffold67G22708' => 'sas', 'SMO356G0103' => 'smo', 'Solyc03g045140.4' => 'sly', 'Solyc03g045150.1' => 'sly', 'Solyc04g056440.3' => 'sly', 'Solyc04g056450.4' => 'sly', 'Solyc07g150128.1' => 'sly', 'Solyc09g090500.3' => 'sly', 'Solyc09g090510.3' => 'sly', 'Sopen03g009610' => 'spe', 'Sopen04g025330' => 'spe', 'Sopen04g025340' => 'spe', 'Sopen09g033420' => 'spe', 'Sopen09g033430' => 'spe', 'Sopen09g033440' => 'spe', 'Sp3g21120' => 'spa', 'Sp3g21130' => 'spa', 'Sp3g21140' => 'spa', 'Sp3g21180' => 'spa', 'SpUn0047_0010' => 'spa', 'SpUn0047_0020' => 'spa', 'TAR362G0672' => 'tar', 'THA.LOC104804765' => 'tha', 'THA.LOC104806424' => 'tha', 'THA.LOC104808649' => 'tha', 'THA.LOC104808651' => 'tha', 'THA.LOC104808652' => 'tha', 'THA.LOC104808653' => 'tha', 'Thecc.04G260700' => 'tca', 'Thecc.04G260800' => 'tca', 'Thecc.04G260900' => 'tca', 'Thecc.04G261000' => 'tca', 'Thecc.04G261200' => 'tca', 'Thecc.04G261300' => 'tca', 'Thecc.04G261400' => 'tca', 'Thecc.04G261500' => 'tca', 'Thecc.04G262900' => 'tca', 'Thhalv10020039m.g' => 'esa', 'Thhalv10020040m.g' => 'esa', 'Thhalv10020049m.g' => 'esa', 'Thhalv10022172m.g' => 'esa', 'TPR.G28756' => 'tpr', 'TPR.G28852' => 'tpr', 'TWI09G0985' => 'twi', 'TWI09G1386' => 'twi', 'unitig_749.g13515' => 'ugi', 'vmacro08534' => 'vma', 'vmacro08535' => 'vma', 'vmacro08536' => 'vma', 'VMungo0720G1851' => 'vmu', 'Zm00001eb041970' => 'zma', 'Zm00001eb102480' => 'zma', 'Zm00001eb164950' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001254' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001254' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001254' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001254' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001254', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '498', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p31550' => 'bna', 'A01p31560' => 'bna', 'A03p43290' => 'bna', 'A07p08890' => 'bna', 'A07p08980' => 'bna', 'A07p08990' => 'bna', 'Aa31LG8G9970' => 'aar', 'Aa31LG8G9980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.418' => 'aag', 'Actinidia35810' => 'ach', 'Ah.04g155380' => 'amhyb', 'Ah.13g072320' => 'amhyb', 'AL242U10010' => 'aly', 'AL242U10030' => 'aly', 'AL3G38120' => 'aly', 'AL3G38170' => 'aly', 'AL3G38190' => 'aly', 'Aqoxy2G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08UV73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M4LDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56Z1DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I33M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5I47GQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZS5X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60TT6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2G91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WEA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BHDE6S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AW8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ3JB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I255AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2BZ41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTU25K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2HI9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4GAS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNBV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6IN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX4IN3' => 'arhy', 'AT3G23460' => 'ath', 'AT3G23470' => 'ath', 'AT3G23480' => 'ath', 'AT3G23510' => 'ath', 'AT3G23530' => 'ath', 'ATR0736G203' => 'atr', 'Atru.chr4.1938' => 'acertr', 'Atru.chr4.1940' => 'acertr', 'Atru.chr6.2805' => 'acertr', 'AUR62002177' => 'cqu', 'AUR62015532' => 'cqu', 'AUR62016161' => 'cqu', 'AUR62035075' => 'cqu', 'BcaB03g14622' => 'bca', 'BcaB04g20446' => 'bca', 'BcaB06g26491' => 'bca', 'BcaB06g26493' => 'bca', 'BcaB06g26502' => 'bca', 'BcaC01g03370' => 'bca', 'BcaC01g03804' => 'bca', 'BcaC06g35528' => 'bca', 'BcaC06g35529' => 'bca', 'BcaC06g35537' => 'bca', 'BcaC09g49303' => 'bca', 'BolC1t03986H' => 'bol', 'BolC3t17123H' => 'bol', 'BolC3t17584H' => 'bol', 'BolC6t37463H' => 'bol', 'BolC7t41867H' => 'bol', 'BolC7t41884H' => 'bol', 'BolC7t41886H' => 'bol', 'BolC7t41887H' => 'bol', 'BolC7t41888H' => 'bol', 'BraA01t03285Z' => 'bra', 'BraA01t03286Z' => 'bra', 'BraA03t13468Z' => 'bra', 'BraA07t28679Z' => 'bra', 'BraA07t28688Z' => 'bra', 'BraA07t28689Z' => 'bra', 'BraA07t28692Z' => 'bra', 'BraA07t28694Z' => 'bra', 'C01p40250' => 'bna', 'C01p40290' => 'bna', 'C01p40320' => 'bna', 'C03p48450' => 'bna', 'C03p53200' => 'bna', 'C07p13720' => 'bna', 'C07p13820' => 'bna', 'C07p13830' => 'bna', 'C07p13850' => 'bna', 'C07p13860' => 'bna', 'CAN.G135.73' => 'can', 'CAN.G1801.3' => 'can', 'CAN.G220.58' => 'can', 'CAN.G220.59' => 'can', 'CAN.G220.60' => 'can', 'CAN.G220.61' => 'can', 'CAN.G220.62' => 'can', 'CAN.G220.63' => 'can', 'CAN.G220.64' => 'can', 'CAN.G220.65' => 'can', 'CAN.G220.92' => 'can', 'CAN.G524.36' => 'can', 'CAN.G588.66' => 'can', 'CAN.G674.11' => 'can', 'CAN.G681.64' => 'can', 'CAN.G681.65' => 'can', 'CAN.G681.66' => 'can', 'CAN.G681.68' => 'can', 'CAN.G681.69' => 'can', 'CANSAT21G0944' => 'cansat', 'CANSAT21G1419' => 'cansat', 'CANSAT25G3284' => 'cansat', 'CANSAT78G1771' => 'cansat', 'CARHR099420' => 'chi', 'CARHR099430' => 'chi', 'Carub.0003s2371' => 'cru', 'Carub.0003s2373' => 'cru', 'Ca_09809_v3' => 'car', 'Ca_11937_v3' => 'car', 'Ca_28724_v3' => 'car', 'Ca_30490_v3' => 'car', 'CBR_g31184' => 'cbr', 'Cc03_g05980' => 'ccan', 'CDE08G0370' => 'cde', 'CDE08G1432' => 'cde', 'CDE08G1481' => 'cde', 'Cfa014764' => 'cfa', 'Cfa014765' => 'cfa', 'Cfa025193' => 'cfa', 'Cfa025468' => 'cfa', 'Ciclev10004346m.g' => 'ccl', 'Ciclev10005536m.g' => 'ccl', 'Ciclev10005710m.g' => 'ccl', 'Ciclev10005727m.g' => 'ccl', 'Ciclev10007034m.g' => 'ccl', 'Ciclev10030464m.g' => 'ccl', 'CiPaw.01G179700' => 'cil', 'CiPaw.01G179800' => 'cil', 'CiPaw.01G180000' => 'cil', 'CiPaw.01G180100' => 'cil', 'CiPaw.01G180200' => 'cil', 'CiPaw.04G074600' => 'cil', 'CiPaw.11G113200' => 'cil', 'CiPaw.12G016000' => 'cil', 'CiPaw.14G041800' => 'cil', 'CiPaw.14G090000' => 'cil', 'ClCG00G005870' => 'cla', 'ClCG06G007160' => 'cla', 'ClCG06G007170' => 'cla', 'ClCG06G007180' => 'cla', 'ClCG07G007110' => 'cla', 'ClCG07G007160' => 'cla', 'ClCG07G007170' => 'cla', 'ClCG09G014600' => 'cla', 'COL.COLO4_00227' => 'col', 'COL.COLO4_15937' => 'col', 'COL.COLO4_15940' => 'col', 'COL.COLO4_15941' => 'col', 'COL.COLO4_15943' => 'col', 'COL.COLO4_20821' => 'col', 'COL.COLO4_25895' => 'col', 'COL.COLO4_25896' => 'col', 'COL.COLO4_25897' => 'col', 'COL.COLO4_25898' => 'col', 'COL.COLO4_25899' => 'col', 'COL.COLO4_25900' => 'col', 'COL.COLO4_25901' => 'col', 'COL.COLO4_25903' => 'col', 'COL.COLO4_30350' => 'col', 'Cpa.g.sc1584.1' => 'cpa', 'Cpa.g.sc44.17' => 'cpa', 'Cpa.g.sc44.18' => 'cpa', 'Cre06.g281250' => 'cre', 'CsaV3_2G012540' => 'csa', 'CsaV3_2G012550' => 'csa', 'CsaV3_2G012560' => 'csa', 'CSS0032050' => 'camsi', 'CSS0047456' => 'camsi', 'DCAR_030759' => 'dca', 'Dinv29819' => 'din', 'Duzib052G1047' => 'dzi', 'Duzib151G0707' => 'dzi', 'Duzib212G0708' => 'dzi', 'Duzib212G0719' => 'dzi', 'EL10Ac3g04936' => 'bvu', 'EL10Ac3g04960' => 'bvu', 'EL10Ac3g04961' => 'bvu', 'EL10Ac3g04963' => 'bvu', 'EL10Ac3g04964' => 'bvu', 'Eucgr.H02968' => 'egr', 'Eucgr.H02969' => 'egr', 'Eucgr.H02971' => 'egr', 'Eucgr.H02972' => 'egr', 'Eucgr.H02975' => 'egr', 'Eucgr.H02976' => 'egr', 'FAN01G2895' => 'fan', 'FAN01G2911' => 'fan', 'FAN06G0180' => 'fan', 'FAN06G1053' => 'fan', 'FAN06G1280' => 'fan', 'FAN06G2889' => 'fan', 'FAN06G4487' => 'fan', 'FAN12G0280' => 'fan', 'FAN12G3384' => 'fan', 'FAN17G0060' => 'fan', 'FAN17G3117' => 'fan', 'FAN21G3292' => 'fan', 'FAN22G1285' => 'fan', 'FAN22G2004' => 'fan', 'FvH4_4g04310' => 'fve', 'FvH4_4g04360' => 'fve', 'FvH4_4g04361' => 'fve', 'FvH4_7g18110' => 'fve', 'FvH4_7g18140' => 'fve', 'FvH4_7g18480' => 'fve', 'FvH4_7g18481' => 'fve', 'Glyma.10G189400' => 'gma', 'Glyma.20G201400' => 'gma', 'Gohir.A01G025200' => 'ghi', 'Gohir.A01G025600' => 'ghi', 'Gohir.A02G041801' => 'ghi', 'Gohir.A02G041802' => 'ghi', 'Gohir.A02G042000' => 'ghi', 'Gohir.A09G228050' => 'ghi', 'Gohir.A10G159666' => 'ghi', 'Gohir.D01G023400' => 'ghi', 'Gohir.D01G023409' => 'ghi', 'Gohir.D01G077101' => 'ghi', 'Gohir.D02G047550' => 'ghi', 'Gohir.D02G047600' => 'ghi', 'Gohir.D03G094750' => 'ghi', 'Gohir.D09G229100' => 'ghi', 'Gohir.D10G084600' => 'ghi', 'Gohir.D10G211900' => 'ghi', 'Gohir.D13G167111' => 'ghi', 'Gorai.002G025800' => 'gra', 'Gorai.002G026100' => 'gra', 'Gorai.005G052800' => 'gra', 'Gorai.005G052900' => 'gra', 'Gorai.006G251800' => 'gra', 'Gorai.011G092100' => 'gra', 'GSVIVG01027886001' => 'vvi', 'GSVIVG01027890001' => 'vvi', 'HanXRQChr02g0059351' => 'han', 'HanXRQChr12g0361741' => 'han', 'HanXRQChr12g0362451' => 'han', 'HanXRQChr12g0362471' => 'han', 'HanXRQChr12g0362501' => 'han', 'HanXRQChr12g0362671' => 'han', 'HanXRQChr12g0362681' => 'han', 'HanXRQChr12g0362691' => 'han', 'Haze_11439' => 'cav', 'Haze_11441' => 'cav', 'Haze_11442' => 'cav', 'Hma1.2p1_0267F.1_g107070' => 'hma', 'Hma1.2p1_0267F.1_g107080' => 'hma', 'Hma1.2p1_0385F.1_g141425' => 'hma', 'Hma1.2p1_0385F.1_g141430' => 'hma', 'Hma1.2p1_3458F.1_g336110' => 'hma', 'HPP92_009056' => 'vpl', 'HPP92_028141' => 'vpl', 'Hund03062' => 'sun', 'Hund03063' => 'sun', 'Hund03064' => 'sun', 'Hund03065' => 'sun', 'Hund03066' => 'sun', 'Hund03067' => 'sun', 'Hund03069' => 'sun', 'Hund03070' => 'sun', 'Hund03071' => 'sun', 'Hund03072' => 'sun', 'Hund03073' => 'sun', 'Hund03074' => 'sun', 'Hund03075' => 'sun', 'Hund03538' => 'sun', 'Lalb_Chr06g0169441' => 'lal', 'Lalb_Chr06g0169451' => 'lal', 'Lalb_Chr21g0312441' => 'lal', 'Lj5g0020800' => 'lja', 'Lj6C623G11' => 'lonja', 'Lj6C623T7' => 'lonja', 'Lsat_1_v5_gn_6_54580' => 'lsa', 'Lsat_1_v5_gn_6_54640' => 'lsa', 'Lsat_1_v5_gn_6_54780' => 'lsa', 'Lsat_1_v5_gn_6_56761' => 'lsa', 'Lsat_1_v5_gn_6_56781' => 'lsa', 'Lsat_1_v5_gn_6_56941' => 'lsa', 'Lsat_1_v5_gn_6_68821' => 'lsa', 'Manes.03G160700' => 'mes', 'Manes.03G160800' => 'mes', 'Manes.03G160850' => 'mes', 'Manes.03G160900' => 'mes', 'Manes.03G161000' => 'mes', 'Manes.03G161100' => 'mes', 'Manes.03G161200' => 'mes', 'Manes.03G161350' => 'mes', 'Manes.12G059300' => 'mes', 'Manes.15G043966' => 'mes', 'Mapoly0062s0039' => 'mpo', 'Mapoly1664s0001' => 'mpo', 'Mapoly3054s0001' => 'mpo', 'Mapoly4131s0001' => 'mpo', 'MBI07_g11125_MAGBIO' => 'mbi', 'MBI07_g14511_MAGBIO' => 'mbi', 'MBI07_g20243_MAGBIO' => 'mbi', 'MCO05G694' => 'mco', 'MD16G1224400' => 'mdo', 'Medtr1g044520' => 'mtr', 'Medtr1g073700' => 'mtr', 'MELO3C000522.2' => 'cme', 'MELO3C001398.2' => 'cme', 'MELO3C023030.2' => 'cme', 'MELO3C023031.2' => 'cme', 'MELO3C023032.2' => 'cme', 'MELO3C027187.2' => 'cme', 'MELO3C027751.2' => 'cme', 'MELO3C031245.2' => 'cme', 'Migut.G00492' => 'egut', 'Migut.N00291' => 'egut', 'MSTRG.24666' => 'ama', 'MSTRG.4158' => 'ama', 'Nitab4.5_0000049g0080' => 'nta', 'Nitab4.5_0000474g0040' => 'nta', 'Nitab4.5_0000483g0040' => 'nta', 'Nitab4.5_0001051g0160' => 'nta', 'Nitab4.5_0001425g0010' => 'nta', 'Nitab4.5_0001425g0020' => 'nta', 'Nitab4.5_0001425g0070' => 'nta', 'Nitab4.5_0001470g0020' => 'nta', 'Nitab4.5_0001470g0030' => 'nta', 'Nitab4.5_0001470g0040' => 'nta', 'Nitab4.5_0001470g0050' => 'nta', 'Nitab4.5_0001470g0060' => 'nta', 'Nitab4.5_0001470g0070' => 'nta', 'Nitab4.5_0001470g0080' => 'nta', 'Nitab4.5_0002293g0020' => 'nta', 'Nitab4.5_0002709g0090' => 'nta', 'Nitab4.5_0004167g0040' => 'nta', 'Nitab4.5_0005604g0010' => 'nta', 'Nitab4.5_0006069g0030' => 'nta', 'Nitab4.5_0009537g0010' => 'nta', 'Nitab4.5_0016872g0010' => 'nta', 'Nitab4.5_0019395g0010' => 'nta', 'Nitab4.5_0026646g0010' => 'nta', 'Nn1g02911' => 'nnu', 'Oeu055250.1' => 'oeu', 'Oeu055251.1' => 'oeu', 'Os07g0474600' => 'osa', 'Os12g0267100' => 'osa', 'Os12g0267200' => 'osa', 'Peaxi162Scf00013g00340' => 'pax', 'Peaxi162Scf00033g00261' => 'pax', 'Peaxi162Scf00033g00275' => 'pax', 'Peaxi162Scf00033g02610' => 'pax', 'Peaxi162Scf00033g02611' => 'pax', 'Peaxi162Scf00169g00317' => 'pax', 'Peaxi162Scf00169g00318' => 'pax', 'Peaxi162Scf00266g01010' => 'pax', 'Peaxi162Scf00300g00058' => 'pax', 'Peaxi162Scf00300g00518' => 'pax', 'Peaxi162Scf00321g00036' => 'pax', 'Peaxi162Scf00817g00119' => 'pax', 'Peaxi162Scf00817g00120' => 'pax', 'Peaxi162Scf01082g00025' => 'pax', 'Peaxi162Scf01082g00028' => 'pax', 'Peaxi162Scf01248g00314' => 'pax', 'Peaxi162Scf01248g00420' => 'pax', 'Peaxi162Scf01248g00421' => 'pax', 'PGR004G2782' => 'pgr', 'PGSC0003DMG400007263' => 'stu', 'PGSC0003DMG400007265' => 'stu', 'PGSC0003DMG400016834' => 'stu', 'PGSC0003DMG400017202' => 'stu', 'Phvul.008G158130' => 'pvu', 'Potri.008G170300' => 'ptr', 'Potri.010G067567' => 'ptr', 'Potri.010G067600' => 'ptr', 'Potri.010G067700' => 'ptr', 'Potri.010G067800' => 'ptr', 'Potri.010G067900' => 'ptr', 'Pp3c1_41090' => 'ppa', 'PRCOL_00005990' => 'pco', 'Prupe.1G045800' => 'ppe', 'Psat1g031880' => 'psa', 'Psat6g133480' => 'psa', 'PSO017G4741' => 'pso', 'PSO017G5938' => 'pso', 'PSO063G7051' => 'pso', 'QL06p020190' => 'qlo', 'QL06p020465' => 'qlo', 'QL06p020509' => 'qlo', 'QL06p020553' => 'qlo', 'QL06p020653' => 'qlo', 'QL06p020667' => 'qlo', 'RcHm_v2.0_Chr1g0325031' => 'rch', 'RcHm_v2.0_Chr1g0362281' => 'rch', 'RcHm_v2.0_Chr4g0390341' => 'rch', 'RcHm_v2.0_Chr4g0394761' => 'rch', 'RcHm_v2.0_Chr4g0394801' => 'rch', 'RcHm_v2.0_Chr4g0394871' => 'rch', 'RcHm_v2.0_Chr4g0394921' => 'rch', 'RcHm_v2.0_Chr4g0394931' => 'rch', 'RcHm_v2.0_Chr4g0394941' => 'rch', 'RcHm_v2.0_Chr4g0404311' => 'rch', 'RcHm_v2.0_Chr6g0258991' => 'rch', 'RcHm_v2.0_Chr6g0273911' => 'rch', 'RcHm_v2.0_Chr6g0288341' => 'rch', 'Rhsim04G0173900' => 'rsi', 'Rhsim04G0174000' => 'rsi', 'Rhsim04G0174200' => 'rsi', 'Rhsim04G0174300' => 'rsi', 'Sabra08G0130000' => 'sbr', 'Sabra08G0130100' => 'sbr', 'Sabra08G0130200' => 'sbr', 'Sabra10G0039500' => 'sbr', 'Sabra10G0039600' => 'sbr', 'Sabra10G0039700' => 'sbr', 'Sabra10G0039900' => 'sbr', 'SalBow1G2701' => 'sbo', 'SalBow3G4332' => 'sbo', 'SalBow8G0297' => 'sbo', 'SalBow8G1010' => 'sbo', 'SalBow8G1245' => 'sbo', 'SalBow8G2494' => 'sbo', 'SalBow8G2922' => 'sbo', 'SalBow8G3176' => 'sbo', 'SalBow8G3913' => 'sbo', 'SalBow8G4116' => 'sbo', 'SalBow8G4602' => 'sbo', 'SalBow8G5067' => 'sbo', 'Sc13g0005970' => 'sci', 'Sc13g0006090' => 'sci', 'Sc13g0006100' => 'sci', 'Sc13g0006110' => 'sci', 'Sed0000108' => 'sed', 'Sed0007860' => 'sed', 'Sed0021154' => 'sed', 'SEGI_06360' => 'sgi', 'SEGI_07006' => 'sgi', 'SEGI_11340' => 'sgi', 'SEGI_14689' => 'sgi', 'SEGI_20730' => 'sgi', 'SEGI_23794' => 'sgi', 'SEGI_32890' => 'sgi', 'SEGI_38188' => 'sgi', 'SGA_v2.0_scaffold31G12645' => 'sas', 'SGA_v2.0_scaffold67G22708' => 'sas', 'SMO356G0103' => 'smo', 'Solyc03g045140.4' => 'sly', 'Solyc03g045150.1' => 'sly', 'Solyc04g056440.3' => 'sly', 'Solyc04g056450.4' => 'sly', 'Solyc07g150128.1' => 'sly', 'Solyc09g090500.3' => 'sly', 'Solyc09g090510.3' => 'sly', 'Sopen03g009610' => 'spe', 'Sopen04g025330' => 'spe', 'Sopen04g025340' => 'spe', 'Sopen09g033420' => 'spe', 'Sopen09g033430' => 'spe', 'Sopen09g033440' => 'spe', 'Sp3g21120' => 'spa', 'Sp3g21130' => 'spa', 'Sp3g21140' => 'spa', 'Sp3g21180' => 'spa', 'SpUn0047_0010' => 'spa', 'SpUn0047_0020' => 'spa', 'TAR362G0672' => 'tar', 'THA.LOC104804765' => 'tha', 'THA.LOC104806424' => 'tha', 'THA.LOC104808649' => 'tha', 'THA.LOC104808651' => 'tha', 'THA.LOC104808652' => 'tha', 'THA.LOC104808653' => 'tha', 'Thecc.04G260700' => 'tca', 'Thecc.04G260800' => 'tca', 'Thecc.04G260900' => 'tca', 'Thecc.04G261000' => 'tca', 'Thecc.04G261200' => 'tca', 'Thecc.04G261300' => 'tca', 'Thecc.04G261400' => 'tca', 'Thecc.04G261500' => 'tca', 'Thecc.04G262900' => 'tca', 'Thhalv10020039m.g' => 'esa', 'Thhalv10020040m.g' => 'esa', 'Thhalv10020049m.g' => 'esa', 'Thhalv10022172m.g' => 'esa', 'TPR.G28756' => 'tpr', 'TPR.G28852' => 'tpr', 'TWI09G0985' => 'twi', 'TWI09G1386' => 'twi', 'unitig_749.g13515' => 'ugi', 'vmacro08534' => 'vma', 'vmacro08535' => 'vma', 'vmacro08536' => 'vma', 'VMungo0720G1851' => 'vmu', 'Zm00001eb041970' => 'zma', 'Zm00001eb102480' => 'zma', 'Zm00001eb164950' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001254', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001254' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001254', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '498', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001254' ) ), 'genes' => array( 'A01p31550' => 'bna', 'A01p31560' => 'bna', 'A03p43290' => 'bna', 'A07p08890' => 'bna', 'A07p08980' => 'bna', 'A07p08990' => 'bna', 'Aa31LG8G9970' => 'aar', 'Aa31LG8G9980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.418' => 'aag', 'Actinidia35810' => 'ach', 'Ah.04g155380' => 'amhyb', 'Ah.13g072320' => 'amhyb', 'AL242U10010' => 'aly', 'AL242U10030' => 'aly', 'AL3G38120' => 'aly', 'AL3G38170' => 'aly', 'AL3G38190' => 'aly', 'Aqoxy2G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.08UV73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3M4LDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56Z1DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.58I33M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5I47GQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZS5X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60TT6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6D2G91' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6WEA5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BHDE6S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AW8Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DJ3JB0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I255AM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2BZ41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTU25K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2HI9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4GAS1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RNBV6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6IN1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX4IN3' => 'arhy', 'AT3G23460' => 'ath', 'AT3G23470' => 'ath', 'AT3G23480' => 'ath', 'AT3G23510' => 'ath', 'AT3G23530' => 'ath', 'ATR0736G203' => 'atr', 'Atru.chr4.1938' => 'acertr', 'Atru.chr4.1940' => 'acertr', 'Atru.chr6.2805' => 'acertr', 'AUR62002177' => 'cqu', 'AUR62015532' => 'cqu', 'AUR62016161' => 'cqu', 'AUR62035075' => 'cqu', 'BcaB03g14622' => 'bca', 'BcaB04g20446' => 'bca', 'BcaB06g26491' => 'bca', 'BcaB06g26493' => 'bca', 'BcaB06g26502' => 'bca', 'BcaC01g03370' => 'bca', 'BcaC01g03804' => 'bca', 'BcaC06g35528' => 'bca', 'BcaC06g35529' => 'bca', 'BcaC06g35537' => 'bca', 'BcaC09g49303' => 'bca', 'BolC1t03986H' => 'bol', 'BolC3t17123H' => 'bol', 'BolC3t17584H' => 'bol', 'BolC6t37463H' => 'bol', 'BolC7t41867H' => 'bol', 'BolC7t41884H' => 'bol', 'BolC7t41886H' => 'bol', 'BolC7t41887H' => 'bol', 'BolC7t41888H' => 'bol', 'BraA01t03285Z' => 'bra', 'BraA01t03286Z' => 'bra', 'BraA03t13468Z' => 'bra', 'BraA07t28679Z' => 'bra', 'BraA07t28688Z' => 'bra', 'BraA07t28689Z' => 'bra', 'BraA07t28692Z' => 'bra', 'BraA07t28694Z' => 'bra', 'C01p40250' => 'bna', 'C01p40290' => 'bna', 'C01p40320' => 'bna', 'C03p48450' => 'bna', 'C03p53200' => 'bna', 'C07p13720' => 'bna', 'C07p13820' => 'bna', 'C07p13830' => 'bna', 'C07p13850' => 'bna', 'C07p13860' => 'bna', 'CAN.G135.73' => 'can', 'CAN.G1801.3' => 'can', 'CAN.G220.58' => 'can', 'CAN.G220.59' => 'can', 'CAN.G220.60' => 'can', 'CAN.G220.61' => 'can', 'CAN.G220.62' => 'can', 'CAN.G220.63' => 'can', 'CAN.G220.64' => 'can', 'CAN.G220.65' => 'can', 'CAN.G220.92' => 'can', 'CAN.G524.36' => 'can', 'CAN.G588.66' => 'can', 'CAN.G674.11' => 'can', 'CAN.G681.64' => 'can', 'CAN.G681.65' => 'can', 'CAN.G681.66' => 'can', 'CAN.G681.68' => 'can', 'CAN.G681.69' => 'can', 'CANSAT21G0944' => 'cansat', 'CANSAT21G1419' => 'cansat', 'CANSAT25G3284' => 'cansat', 'CANSAT78G1771' => 'cansat', 'CARHR099420' => 'chi', 'CARHR099430' => 'chi', 'Carub.0003s2371' => 'cru', 'Carub.0003s2373' => 'cru', 'Ca_09809_v3' => 'car', 'Ca_11937_v3' => 'car', 'Ca_28724_v3' => 'car', 'Ca_30490_v3' => 'car', 'CBR_g31184' => 'cbr', 'Cc03_g05980' => 'ccan', 'CDE08G0370' => 'cde', 'CDE08G1432' => 'cde', 'CDE08G1481' => 'cde', 'Cfa014764' => 'cfa', 'Cfa014765' => 'cfa', 'Cfa025193' => 'cfa', 'Cfa025468' => 'cfa', 'Ciclev10004346m.g' => 'ccl', 'Ciclev10005536m.g' => 'ccl', 'Ciclev10005710m.g' => 'ccl', 'Ciclev10005727m.g' => 'ccl', 'Ciclev10007034m.g' => 'ccl', 'Ciclev10030464m.g' => 'ccl', 'CiPaw.01G179700' => 'cil', 'CiPaw.01G179800' => 'cil', 'CiPaw.01G180000' => 'cil', 'CiPaw.01G180100' => 'cil', 'CiPaw.01G180200' => 'cil', 'CiPaw.04G074600' => 'cil', 'CiPaw.11G113200' => 'cil', 'CiPaw.12G016000' => 'cil', 'CiPaw.14G041800' => 'cil', 'CiPaw.14G090000' => 'cil', 'ClCG00G005870' => 'cla', 'ClCG06G007160' => 'cla', 'ClCG06G007170' => 'cla', 'ClCG06G007180' => 'cla', 'ClCG07G007110' => 'cla', 'ClCG07G007160' => 'cla', 'ClCG07G007170' => 'cla', 'ClCG09G014600' => 'cla', 'COL.COLO4_00227' => 'col', 'COL.COLO4_15937' => 'col', 'COL.COLO4_15940' => 'col', 'COL.COLO4_15941' => 'col', 'COL.COLO4_15943' => 'col', 'COL.COLO4_20821' => 'col', 'COL.COLO4_25895' => 'col', 'COL.COLO4_25896' => 'col', 'COL.COLO4_25897' => 'col', 'COL.COLO4_25898' => 'col', 'COL.COLO4_25899' => 'col', 'COL.COLO4_25900' => 'col', 'COL.COLO4_25901' => 'col', 'COL.COLO4_25903' => 'col', 'COL.COLO4_30350' => 'col', 'Cpa.g.sc1584.1' => 'cpa', 'Cpa.g.sc44.17' => 'cpa', 'Cpa.g.sc44.18' => 'cpa', 'Cre06.g281250' => 'cre', 'CsaV3_2G012540' => 'csa', 'CsaV3_2G012550' => 'csa', 'CsaV3_2G012560' => 'csa', 'CSS0032050' => 'camsi', 'CSS0047456' => 'camsi', 'DCAR_030759' => 'dca', 'Dinv29819' => 'din', 'Duzib052G1047' => 'dzi', 'Duzib151G0707' => 'dzi', 'Duzib212G0708' => 'dzi', 'Duzib212G0719' => 'dzi', 'EL10Ac3g04936' => 'bvu', 'EL10Ac3g04960' => 'bvu', 'EL10Ac3g04961' => 'bvu', 'EL10Ac3g04963' => 'bvu', 'EL10Ac3g04964' => 'bvu', 'Eucgr.H02968' => 'egr', 'Eucgr.H02969' => 'egr', 'Eucgr.H02971' => 'egr', 'Eucgr.H02972' => 'egr', 'Eucgr.H02975' => 'egr', 'Eucgr.H02976' => 'egr', 'FAN01G2895' => 'fan', 'FAN01G2911' => 'fan', 'FAN06G0180' => 'fan', 'FAN06G1053' => 'fan', 'FAN06G1280' => 'fan', 'FAN06G2889' => 'fan', 'FAN06G4487' => 'fan', 'FAN12G0280' => 'fan', 'FAN12G3384' => 'fan', 'FAN17G0060' => 'fan', 'FAN17G3117' => 'fan', 'FAN21G3292' => 'fan', 'FAN22G1285' => 'fan', 'FAN22G2004' => 'fan', 'FvH4_4g04310' => 'fve', 'FvH4_4g04360' => 'fve', 'FvH4_4g04361' => 'fve', 'FvH4_7g18110' => 'fve', 'FvH4_7g18140' => 'fve', 'FvH4_7g18480' => 'fve', 'FvH4_7g18481' => 'fve', 'Glyma.10G189400' => 'gma', 'Glyma.20G201400' => 'gma', 'Gohir.A01G025200' => 'ghi', 'Gohir.A01G025600' => 'ghi', 'Gohir.A02G041801' => 'ghi', 'Gohir.A02G041802' => 'ghi', 'Gohir.A02G042000' => 'ghi', 'Gohir.A09G228050' => 'ghi', 'Gohir.A10G159666' => 'ghi', 'Gohir.D01G023400' => 'ghi', 'Gohir.D01G023409' => 'ghi', 'Gohir.D01G077101' => 'ghi', 'Gohir.D02G047550' => 'ghi', 'Gohir.D02G047600' => 'ghi', 'Gohir.D03G094750' => 'ghi', 'Gohir.D09G229100' => 'ghi', 'Gohir.D10G084600' => 'ghi', 'Gohir.D10G211900' => 'ghi', 'Gohir.D13G167111' => 'ghi', 'Gorai.002G025800' => 'gra', 'Gorai.002G026100' => 'gra', 'Gorai.005G052800' => 'gra', 'Gorai.005G052900' => 'gra', 'Gorai.006G251800' => 'gra', 'Gorai.011G092100' => 'gra', 'GSVIVG01027886001' => 'vvi', 'GSVIVG01027890001' => 'vvi', 'HanXRQChr02g0059351' => 'han', 'HanXRQChr12g0361741' => 'han', 'HanXRQChr12g0362451' => 'han', 'HanXRQChr12g0362471' => 'han', 'HanXRQChr12g0362501' => 'han', 'HanXRQChr12g0362671' => 'han', 'HanXRQChr12g0362681' => 'han', 'HanXRQChr12g0362691' => 'han', 'Haze_11439' => 'cav', 'Haze_11441' => 'cav', 'Haze_11442' => 'cav', 'Hma1.2p1_0267F.1_g107070' => 'hma', 'Hma1.2p1_0267F.1_g107080' => 'hma', 'Hma1.2p1_0385F.1_g141425' => 'hma', 'Hma1.2p1_0385F.1_g141430' => 'hma', 'Hma1.2p1_3458F.1_g336110' => 'hma', 'HPP92_009056' => 'vpl', 'HPP92_028141' => 'vpl', 'Hund03062' => 'sun', 'Hund03063' => 'sun', 'Hund03064' => 'sun', 'Hund03065' => 'sun', 'Hund03066' => 'sun', 'Hund03067' => 'sun', 'Hund03069' => 'sun', 'Hund03070' => 'sun', 'Hund03071' => 'sun', 'Hund03072' => 'sun', 'Hund03073' => 'sun', 'Hund03074' => 'sun', 'Hund03075' => 'sun', 'Hund03538' => 'sun', 'Lalb_Chr06g0169441' => 'lal', 'Lalb_Chr06g0169451' => 'lal', 'Lalb_Chr21g0312441' => 'lal', 'Lj5g0020800' => 'lja', 'Lj6C623G11' => 'lonja', 'Lj6C623T7' => 'lonja', 'Lsat_1_v5_gn_6_54580' => 'lsa', 'Lsat_1_v5_gn_6_54640' => 'lsa', 'Lsat_1_v5_gn_6_54780' => 'lsa', 'Lsat_1_v5_gn_6_56761' => 'lsa', 'Lsat_1_v5_gn_6_56781' => 'lsa', 'Lsat_1_v5_gn_6_56941' => 'lsa', 'Lsat_1_v5_gn_6_68821' => 'lsa', 'Manes.03G160700' => 'mes', 'Manes.03G160800' => 'mes', 'Manes.03G160850' => 'mes', 'Manes.03G160900' => 'mes', 'Manes.03G161000' => 'mes', 'Manes.03G161100' => 'mes', 'Manes.03G161200' => 'mes', 'Manes.03G161350' => 'mes', 'Manes.12G059300' => 'mes', 'Manes.15G043966' => 'mes', 'Mapoly0062s0039' => 'mpo', 'Mapoly1664s0001' => 'mpo', 'Mapoly3054s0001' => 'mpo', 'Mapoly4131s0001' => 'mpo', 'MBI07_g11125_MAGBIO' => 'mbi', 'MBI07_g14511_MAGBIO' => 'mbi', 'MBI07_g20243_MAGBIO' => 'mbi', 'MCO05G694' => 'mco', 'MD16G1224400' => 'mdo', 'Medtr1g044520' => 'mtr', 'Medtr1g073700' => 'mtr', 'MELO3C000522.2' => 'cme', 'MELO3C001398.2' => 'cme', 'MELO3C023030.2' => 'cme', 'MELO3C023031.2' => 'cme', 'MELO3C023032.2' => 'cme', 'MELO3C027187.2' => 'cme', 'MELO3C027751.2' => 'cme', 'MELO3C031245.2' => 'cme', 'Migut.G00492' => 'egut', 'Migut.N00291' => 'egut', 'MSTRG.24666' => 'ama', 'MSTRG.4158' => 'ama', 'Nitab4.5_0000049g0080' => 'nta', 'Nitab4.5_0000474g0040' => 'nta', 'Nitab4.5_0000483g0040' => 'nta', 'Nitab4.5_0001051g0160' => 'nta', 'Nitab4.5_0001425g0010' => 'nta', 'Nitab4.5_0001425g0020' => 'nta', 'Nitab4.5_0001425g0070' => 'nta', 'Nitab4.5_0001470g0020' => 'nta', 'Nitab4.5_0001470g0030' => 'nta', 'Nitab4.5_0001470g0040' => 'nta', 'Nitab4.5_0001470g0050' => 'nta', 'Nitab4.5_0001470g0060' => 'nta', 'Nitab4.5_0001470g0070' => 'nta', 'Nitab4.5_0001470g0080' => 'nta', 'Nitab4.5_0002293g0020' => 'nta', 'Nitab4.5_0002709g0090' => 'nta', 'Nitab4.5_0004167g0040' => 'nta', 'Nitab4.5_0005604g0010' => 'nta', 'Nitab4.5_0006069g0030' => 'nta', 'Nitab4.5_0009537g0010' => 'nta', 'Nitab4.5_0016872g0010' => 'nta', 'Nitab4.5_0019395g0010' => 'nta', 'Nitab4.5_0026646g0010' => 'nta', 'Nn1g02911' => 'nnu', 'Oeu055250.1' => 'oeu', 'Oeu055251.1' => 'oeu', 'Os07g0474600' => 'osa', 'Os12g0267100' => 'osa', 'Os12g0267200' => 'osa', 'Peaxi162Scf00013g00340' => 'pax', 'Peaxi162Scf00033g00261' => 'pax', 'Peaxi162Scf00033g00275' => 'pax', 'Peaxi162Scf00033g02610' => 'pax', 'Peaxi162Scf00033g02611' => 'pax', 'Peaxi162Scf00169g00317' => 'pax', 'Peaxi162Scf00169g00318' => 'pax', 'Peaxi162Scf00266g01010' => 'pax', 'Peaxi162Scf00300g00058' => 'pax', 'Peaxi162Scf00300g00518' => 'pax', 'Peaxi162Scf00321g00036' => 'pax', 'Peaxi162Scf00817g00119' => 'pax', 'Peaxi162Scf00817g00120' => 'pax', 'Peaxi162Scf01082g00025' => 'pax', 'Peaxi162Scf01082g00028' => 'pax', 'Peaxi162Scf01248g00314' => 'pax', 'Peaxi162Scf01248g00420' => 'pax', 'Peaxi162Scf01248g00421' => 'pax', 'PGR004G2782' => 'pgr', 'PGSC0003DMG400007263' => 'stu', 'PGSC0003DMG400007265' => 'stu', 'PGSC0003DMG400016834' => 'stu', 'PGSC0003DMG400017202' => 'stu', 'Phvul.008G158130' => 'pvu', 'Potri.008G170300' => 'ptr', 'Potri.010G067567' => 'ptr', 'Potri.010G067600' => 'ptr', 'Potri.010G067700' => 'ptr', 'Potri.010G067800' => 'ptr', 'Potri.010G067900' => 'ptr', 'Pp3c1_41090' => 'ppa', 'PRCOL_00005990' => 'pco', 'Prupe.1G045800' => 'ppe', 'Psat1g031880' => 'psa', 'Psat6g133480' => 'psa', 'PSO017G4741' => 'pso', 'PSO017G5938' => 'pso', 'PSO063G7051' => 'pso', 'QL06p020190' => 'qlo', 'QL06p020465' => 'qlo', 'QL06p020509' => 'qlo', 'QL06p020553' => 'qlo', 'QL06p020653' => 'qlo', 'QL06p020667' => 'qlo', 'RcHm_v2.0_Chr1g0325031' => 'rch', 'RcHm_v2.0_Chr1g0362281' => 'rch', 'RcHm_v2.0_Chr4g0390341' => 'rch', 'RcHm_v2.0_Chr4g0394761' => 'rch', 'RcHm_v2.0_Chr4g0394801' => 'rch', 'RcHm_v2.0_Chr4g0394871' => 'rch', 'RcHm_v2.0_Chr4g0394921' => 'rch', 'RcHm_v2.0_Chr4g0394931' => 'rch', 'RcHm_v2.0_Chr4g0394941' => 'rch', 'RcHm_v2.0_Chr4g0404311' => 'rch', 'RcHm_v2.0_Chr6g0258991' => 'rch', 'RcHm_v2.0_Chr6g0273911' => 'rch', 'RcHm_v2.0_Chr6g0288341' => 'rch', 'Rhsim04G0173900' => 'rsi', 'Rhsim04G0174000' => 'rsi', 'Rhsim04G0174200' => 'rsi', 'Rhsim04G0174300' => 'rsi', 'Sabra08G0130000' => 'sbr', 'Sabra08G0130100' => 'sbr', 'Sabra08G0130200' => 'sbr', 'Sabra10G0039500' => 'sbr', 'Sabra10G0039600' => 'sbr', 'Sabra10G0039700' => 'sbr', 'Sabra10G0039900' => 'sbr', 'SalBow1G2701' => 'sbo', 'SalBow3G4332' => 'sbo', 'SalBow8G0297' => 'sbo', 'SalBow8G1010' => 'sbo', 'SalBow8G1245' => 'sbo', 'SalBow8G2494' => 'sbo', 'SalBow8G2922' => 'sbo', 'SalBow8G3176' => 'sbo', 'SalBow8G3913' => 'sbo', 'SalBow8G4116' => 'sbo', 'SalBow8G4602' => 'sbo', 'SalBow8G5067' => 'sbo', 'Sc13g0005970' => 'sci', 'Sc13g0006090' => 'sci', 'Sc13g0006100' => 'sci', 'Sc13g0006110' => 'sci', 'Sed0000108' => 'sed', 'Sed0007860' => 'sed', 'Sed0021154' => 'sed', 'SEGI_06360' => 'sgi', 'SEGI_07006' => 'sgi', 'SEGI_11340' => 'sgi', 'SEGI_14689' => 'sgi', 'SEGI_20730' => 'sgi', 'SEGI_23794' => 'sgi', 'SEGI_32890' => 'sgi', 'SEGI_38188' => 'sgi', 'SGA_v2.0_scaffold31G12645' => 'sas', 'SGA_v2.0_scaffold67G22708' => 'sas', 'SMO356G0103' => 'smo', 'Solyc03g045140.4' => 'sly', 'Solyc03g045150.1' => 'sly', 'Solyc04g056440.3' => 'sly', 'Solyc04g056450.4' => 'sly', 'Solyc07g150128.1' => 'sly', 'Solyc09g090500.3' => 'sly', 'Solyc09g090510.3' => 'sly', 'Sopen03g009610' => 'spe', 'Sopen04g025330' => 'spe', 'Sopen04g025340' => 'spe', 'Sopen09g033420' => 'spe', 'Sopen09g033430' => 'spe', 'Sopen09g033440' => 'spe', 'Sp3g21120' => 'spa', 'Sp3g21130' => 'spa', 'Sp3g21140' => 'spa', 'Sp3g21180' => 'spa', 'SpUn0047_0010' => 'spa', 'SpUn0047_0020' => 'spa', 'TAR362G0672' => 'tar', 'THA.LOC104804765' => 'tha', 'THA.LOC104806424' => 'tha', 'THA.LOC104808649' => 'tha', 'THA.LOC104808651' => 'tha', 'THA.LOC104808652' => 'tha', 'THA.LOC104808653' => 'tha', 'Thecc.04G260700' => 'tca', 'Thecc.04G260800' => 'tca', 'Thecc.04G260900' => 'tca', 'Thecc.04G261000' => 'tca', 'Thecc.04G261200' => 'tca', 'Thecc.04G261300' => 'tca', 'Thecc.04G261400' => 'tca', 'Thecc.04G261500' => 'tca', 'Thecc.04G262900' => 'tca', 'Thhalv10020039m.g' => 'esa', 'Thhalv10020040m.g' => 'esa', 'Thhalv10020049m.g' => 'esa', 'Thhalv10022172m.g' => 'esa', 'TPR.G28756' => 'tpr', 'TPR.G28852' => 'tpr', 'TWI09G0985' => 'twi', 'TWI09G1386' => 'twi', 'unitig_749.g13515' => 'ugi', 'vmacro08534' => 'vma', 'vmacro08535' => 'vma', 'vmacro08536' => 'vma', 'VMungo0720G1851' => 'vmu', 'Zm00001eb041970' => 'zma', 'Zm00001eb102480' => 'zma', 'Zm00001eb164950' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001254' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001254' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001254' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001254' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151