Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001095', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '559', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p25900' => 'bna', 'A02p12630' => 'bna', 'A02p12660' => 'bna', 'A02p26790' => 'bna', 'A03p27840' => 'bna', 'A03p28820' => 'bna', 'A03p49400' => 'bna', 'A06p27170' => 'bna', 'A10p08250' => 'bna', 'Aa31LG3G7050' => 'aar', 'Aa31LG4G16130' => 'aar', 'Aa31LG4G16140' => 'aar', 'Aa31LG4G16150' => 'aar', 'Aa31LG4G16160' => 'aar', 'Aa31LG4G16170' => 'aar', 'Aa31LG9G11970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3982' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1644' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.710' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.711' => 'aag', 'Actinidia03508' => 'ach', 'Actinidia18335' => 'ach', 'Actinidia18336' => 'ach', 'Actinidia25557' => 'ach', 'Actinidia25558' => 'ach', 'Actinidia29394' => 'ach', 'Actinidia30626' => 'ach', 'Ah.11g045550' => 'amhyb', 'AL5G26520' => 'aly', 'AL5G26530' => 'aly', 'AL6G43740' => 'aly', 'AL8G24850' => 'aly', 'AL8G24860' => 'aly', 'Aqoxy3G01624' => 'aox', 'Aqoxy5G03266' => 'aox', 'Aqoxy5G03267' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6DPN98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6DVG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L31C0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEL1CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGI3MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPV64N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIY3FB' => 'arhy', 'AT3G47350' => 'ath', 'AT3G47360' => 'ath', 'AT4G10020' => 'ath', 'AT5G50590' => 'ath', 'AT5G50600' => 'ath', 'AT5G50690' => 'ath', 'AT5G50700' => 'ath', 'AT5G50770' => 'ath', 'ATR0582G110' => 'atr', 'ATR0582G184' => 'atr', 'ATR0582G359' => 'atr', 'ATR1089G151' => 'atr', 'Atru.chr13.2428' => 'acertr', 'Atru.chr6.1847' => 'acertr', 'Atru.chr6.1848' => 'acertr', 'AUR62022399' => 'cqu', 'AUR62029572' => 'cqu', 'AUR62029574' => 'cqu', 'AUR62029575' => 'cqu', 'AUR62038844' => 'cqu', 'AUR62038845' => 'cqu', 'AUR62043538' => 'cqu', 'AUR62043949' => 'cqu', 'AUR62043950' => 'cqu', 'AUR62044440' => 'cqu', 'BcaB01g02769' => 'bca', 'BcaB01g02891' => 'bca', 'BcaB05g24037' => 'bca', 'BcaB05g24039' => 'bca', 'BcaB08g35434' => 'bca', 'BcaB08g35435' => 'bca', 'BcaB08g35436' => 'bca', 'BcaC01g01835' => 'bca', 'BcaC01g04695' => 'bca', 'BcaC01g04805' => 'bca', 'BcaC03g14638' => 'bca', 'BcaC03g14640' => 'bca', 'BcaC04g20756' => 'bca', 'BcaC06g33441' => 'bca', 'BolC1t03222H' => 'bol', 'BolC2t08213H' => 'bol', 'BolC2t08215H' => 'bol', 'BolC3t15679H' => 'bol', 'BolC3t15796H' => 'bol', 'BolC3t19431H' => 'bol', 'BolC3t19434H' => 'bol', 'BolC7t45273H' => 'bol', 'BolC9t56830H' => 'bol', 'BraA01t02511Z' => 'bra', 'BraA02t06321Z' => 'bra', 'BraA02t06323Z' => 'bra', 'BraA02t07683Z' => 'bra', 'BraA03t11995Z' => 'bra', 'BraA03t12080Z' => 'bra', 'BraA03t14041Z' => 'bra', 'BraA06t25659Z' => 'bra', 'BraSC35t45976Z' => 'bra', 'C02p20700' => 'bna', 'C02p20720' => 'bna', 'C02p42580' => 'bna', 'C03p33600' => 'bna', 'C03p34840' => 'bna', 'C07p47460' => 'bna', 'C09p39540' => 'bna', 'CAN.G1199.6' => 'can', 'CAN.G208.3' => 'can', 'CAN.G732.19' => 'can', 'CAN.G732.20' => 'can', 'CANSAT25G1304' => 'cansat', 'CANSAT25G1839' => 'cansat', 'CANSAT25G2406' => 'cansat', 'CANSAT25G3170' => 'cansat', 'CANSAT54G0342' => 'cansat', 'CANSAT80G0934' => 'cansat', 'CARHR155940' => 'chi', 'CARHR155950' => 'chi', 'CARHR155960' => 'chi', 'CARHR155970' => 'chi', 'CARHR155980' => 'chi', 'CARHR257560' => 'chi', 'CARHR257660' => 'chi', 'CARHR257670' => 'chi', 'CARHR257680' => 'chi', 'CARHR261020' => 'chi', 'Carub.0005s1342' => 'cru', 'Carub.0006s2857' => 'cru', 'Carub.0008s1069' => 'cru', 'Carub.0008s1070' => 'cru', 'Carub.0008s1076' => 'cru', 'Ca_17563_v3' => 'car', 'Ca_17565_v3' => 'car', 'Ca_24485_v3' => 'car', 'Ca_29728_v3' => 'car', 'CBR_g34613' => 'cbr', 'CBR_g3773' => 'cbr', 'CBR_g55384' => 'cbr', 'Cc00_g13450' => 'ccan', 'Cc00_g13460' => 'ccan', 'Cc04_g09900' => 'ccan', 'Cc10_g09130' => 'ccan', 'CDE05G0572' => 'cde', 'CDE05G1322' => 'cde', 'CDE06G1632' => 'cde', 'Cfa008105' => 'cfa', 'Cfa018766' => 'cfa', 'Cfa018767' => 'cfa', 'Cfa022796' => 'cfa', 'Cfa026947' => 'cfa', 'Ciclev10020750m.g' => 'ccl', 'Ciclev10031927m.g' => 'ccl', 'Ciclev10031969m.g' => 'ccl', 'CiPaw.04G010600' => 'cil', 'CiPaw.11G004800' => 'cil', 'CiPaw.12G004500' => 'cil', 'ClCG03G003920' => 'cla', 'ClCG03G003930' => 'cla', 'ClCG08G000700' => 'cla', 'COL.COLO4_16628' => 'col', 'COL.COLO4_16629' => 'col', 'COL.COLO4_16630' => 'col', 'COL.COLO4_16631' => 'col', 'COL.COLO4_16632' => 'col', 'COL.COLO4_24591' => 'col', 'COL.COLO4_36208' => 'col', 'COL.COLO4_36212' => 'col', 'COL.COLO4_38483' => 'col', 'COL.COLO4_38484' => 'col', 'Cpa.g.sc21.62' => 'cpa', 'Cpa.g.sc4.163' => 'cpa', 'Cpa.g.sc4.164' => 'cpa', 'Cre14.g610501' => 'cre', 'CsaV3_1G009800' => 'csa', 'CsaV3_1G009810' => 'csa', 'CsaV3_1G009820' => 'csa', 'CsaV3_5G040170' => 'csa', 'CSS0007600' => 'camsi', 'CSS0048343' => 'camsi', 'DCAR_003515' => 'dca', 'DCAR_007504' => 'dca', 'DCAR_007505' => 'dca', 'DCAR_007506' => 'dca', 'Dinv09404' => 'din', 'Dinv11697' => 'din', 'Dinv11698' => 'din', 'Dinv11699' => 'din', 'Dinv11700' => 'din', 'Dinv17593' => 'din', 'Duzib068G0050' => 'dzi', 'Duzib084G0960' => 'dzi', 'Duzib205G0420' => 'dzi', 'Duzib205G1402' => 'dzi', 'ECA232G1822' => 'eca', 'ECA232G3537' => 'eca', 'ECA246G0726' => 'eca', 'ECA246G2809' => 'eca', 'ECA246G3720' => 'eca', 'ECA247G2510' => 'eca', 'EL10Ac1g01639' => 'bvu', 'EL10Ac5g11382' => 'bvu', 'Eucgr.B00089' => 'egr', 'Eucgr.B00090' => 'egr', 'Eucgr.F02966' => 'egr', 'Eucgr.K02702' => 'egr', 'Eucgr.K02704' => 'egr', 'FAN04G0017' => 'fan', 'FAN08G1138' => 'fan', 'FAN08G2167' => 'fan', 'FAN08G2188' => 'fan', 'FAN08G3146' => 'fan', 'FAN13G0111' => 'fan', 'FAN18G0295' => 'fan', 'FAN18G1775' => 'fan', 'FvH4_5g08690' => 'fve', 'FvH4_5g08700' => 'fve', 'FvH4_5g08710' => 'fve', 'FvH4_5g08730' => 'fve', 'FvH4_5g33170' => 'fve', 'Glyma.01G227900' => 'gma', 'Glyma.05G203300' => 'gma', 'Glyma.05G203402' => 'gma', 'Glyma.08G010800' => 'gma', 'Glyma.11G015100' => 'gma', 'Gohir.A03G054400' => 'ghi', 'Gohir.A05G238200' => 'ghi', 'Gohir.A07G049400' => 'ghi', 'Gohir.A07G049500' => 'ghi', 'Gohir.A09G247351' => 'ghi', 'Gohir.D03G112500' => 'ghi', 'Gohir.D05G240200' => 'ghi', 'Gohir.D07G053700' => 'ghi', 'Gohir.D07G053800' => 'ghi', 'Gorai.001G056800' => 'gra', 'Gorai.001G056900' => 'gra', 'Gorai.003G118700' => 'gra', 'Gorai.006G272300' => 'gra', 'Gorai.009G249100' => 'gra', 'GSVIVG01000914001' => 'vvi', 'GSVIVG01000915001' => 'vvi', 'GSVIVG01008578001' => 'vvi', 'GSVIVG01008579001' => 'vvi', 'GSVIVG01008580001' => 'vvi', 'GSVIVG01008581001' => 'vvi', 'GSVIVG01024343001' => 'vvi', 'GSVIVG01036430001' => 'vvi', 'HanXRQChr02g0034091' => 'han', 'HanXRQChr02g0034101' => 'han', 'HanXRQChr02g0037041' => 'han', 'HanXRQChr04g0102651' => 'han', 'HanXRQChr05g0128811' => 'han', 'HanXRQChr05g0128821' => 'han', 'HanXRQChr05g0128831' => 'han', 'HanXRQChr05g0128871' => 'han', 'HanXRQChr05g0153801' => 'han', 'HanXRQChr05g0153811' => 'han', 'HanXRQChr06g0174791' => 'han', 'HanXRQChr06g0174801' => 'han', 'HanXRQChr09g0273441' => 'han', 'HanXRQChr09g0273451' => 'han', 'HanXRQChr16g0498301' => 'han', 'HanXRQChr17g0568971' => 'han', 'Haze_07173' => 'cav', 'Haze_07174' => 'cav', 'Haze_13919' => 'cav', 'Hma1.2p1_0004F.1_g003850' => 'hma', 'Hma1.2p1_0004F.1_g003860' => 'hma', 'HPP92_012683' => 'vpl', 'HPP92_012704' => 'vpl', 'HPP92_021693' => 'vpl', 'HPP92_021695' => 'vpl', 'HPP92_021708' => 'vpl', 'HPP92_021710' => 'vpl', 'Hund10128' => 'sun', 'Hund10133' => 'sun', 'Hund10137' => 'sun', 'Lalb_Chr07g0183571' => 'lal', 'Lalb_Chr13g0297181' => 'lal', 'Lalb_Chr16g0376811' => 'lal', 'Lj1A670G40' => 'lonja', 'Lj1A672T41' => 'lonja', 'Lj1A673T41' => 'lonja', 'Lj1A673T42' => 'lonja', 'Lj1A674T84' => 'lonja', 'Lj3C1073T4' => 'lonja', 'Lj4A653G10' => 'lonja', 'Lj4g0008195' => 'lja', 'Lj5C93G10' => 'lonja', 'Lj5C93T8' => 'lonja', 'Lj6A831G20' => 'lonja', 'Lj6C831T0' => 'lonja', 'Lj9A481T51' => 'lonja', 'Lj9A700T93' => 'lonja', 'Lj9C481T7' => 'lonja', 'Lj9C481T9' => 'lonja', 'Lj9P481G32' => 'lonja', 'LjContig00222g0013405' => 'lja', 'Lsat_1_v5_gn_0_29221' => 'lsa', 'Lsat_1_v5_gn_1_25201' => 'lsa', 'Lsat_1_v5_gn_1_32801' => 'lsa', 'Lsat_1_v5_gn_1_32821' => 'lsa', 'Lsat_1_v5_gn_1_32841' => 'lsa', 'Lsat_1_v5_gn_3_31161' => 'lsa', 'Lsat_1_v5_gn_4_82400' => 'lsa', 'Lsat_1_v5_gn_4_82421' => 'lsa', 'Lsat_1_v5_gn_4_82500' => 'lsa', 'Lsat_1_v5_gn_5_11960' => 'lsa', 'Manes.06G121600' => 'mes', 'Manes.06G121700' => 'mes', 'Manes.06G121800' => 'mes', 'Manes.06G121900' => 'mes', 'Manes.18G119600' => 'mes', 'MBI06_g35696_MAGBIO' => 'mbi', 'MBI07_g01983_MAGBIO' => 'mbi', 'MBI07_g01984_MAGBIO' => 'mbi', 'MBI07_g01987_MAGBIO' => 'mbi', 'MBI07_g01993_MAGBIO' => 'mbi', 'MBI07_g01995_MAGBIO' => 'mbi', 'MD08G1214700' => 'mdo', 'MD14G1152800' => 'mdo', 'MD14G1152900' => 'mdo', 'MD14G1153000' => 'mdo', 'MD15G1397600' => 'mdo', 'Medtr5g008850' => 'mtr', 'Medtr8g096580' => 'mtr', 'Medtr8g096610' => 'mtr', 'Medtr8g096620' => 'mtr', 'MELO3C002374.2' => 'cme', 'MELO3C002375.2' => 'cme', 'MELO3C002376.2' => 'cme', 'MELO3C002377.2' => 'cme', 'MELO3C022194.2' => 'cme', 'Migut.C01358' => 'egut', 'Migut.I00555' => 'egut', 'Migut.I00556' => 'egut', 'Nitab4.5_0000021g1040' => 'nta', 'Nitab4.5_0000645g0020' => 'nta', 'Nitab4.5_0000709g0020' => 'nta', 'Nitab4.5_0001257g0050' => 'nta', 'Nitab4.5_0002137g0030' => 'nta', 'Nitab4.5_0002530g0030' => 'nta', 'Nitab4.5_0002654g0160' => 'nta', 'Nitab4.5_0003346g0070' => 'nta', 'Nitab4.5_0003510g0030' => 'nta', 'Nitab4.5_0004761g0040' => 'nta', 'Nitab4.5_0006301g0010' => 'nta', 'Nn1g09839' => 'nnu', 'Nn3g16389' => 'nnu', 'Nn3g16390' => 'nnu', 'Nn3g16391' => 'nnu', 'Nn3g18469' => 'nnu', 'Nn3g18632' => 'nnu', 'Nn4g22248' => 'nnu', 'Nn4g22249' => 'nnu', 'Nn4g24549' => 'nnu', 'Nn4g24798' => 'nnu', 'Nn4g24799' => 'nnu', 'Nn4g24890' => 'nnu', 'Nn7g36853' => 'nnu', 'Oeu006615.1' => 'oeu', 'Oeu022159.1' => 'oeu', 'Oeu025418.1' => 'oeu', 'Oeu028102.1' => 'oeu', 'Oeu058096.1' => 'oeu', 'Os02g0511100' => 'osa', 'Os02g0511400' => 'osa', 'Os03g0842900' => 'osa', 'Os04g0390700' => 'osa', 'Os04g0390800' => 'osa', 'Os11g0499600' => 'osa', 'Os12g0464400' => 'osa', 'Peaxi162Scf00007g00717' => 'pax', 'Peaxi162Scf00078g00032' => 'pax', 'Peaxi162Scf00128g01525' => 'pax', 'Peaxi162Scf00516g00324' => 'pax', 'Peaxi162Scf00961g00312' => 'pax', 'Peaxi162Scf01064g00261' => 'pax', 'PGR031G1561' => 'pgr', 'PGR042G3573' => 'pgr', 'PGR083G2491' => 'pgr', 'PGSC0003DMG400026485' => 'stu', 'PGSC0003DMG400028960' => 'stu', 'PGSC0003DMG400042259' => 'stu', 'PGSC0003DMG401010803' => 'stu', 'PGSC0003DMG402010803' => 'stu', 'PGSC0003DMG402026939' => 'stu', 'Phvul.002G285000' => 'pvu', 'Phvul.002G285100' => 'pvu', 'Phvul.002G285200' => 'pvu', 'Potri.012G101900' => 'ptr', 'Potri.012G102000' => 'ptr', 'Potri.013G100200' => 'ptr', 'Potri.015G099900' => 'ptr', 'Potri.015G100000' => 'ptr', 'Potri.015G100102' => 'ptr', 'Potri.016G048800' => 'ptr', 'Potri.016G048900' => 'ptr', 'Potri.019G073200' => 'ptr', 'Pp3c20_12760' => 'ppa', 'Pp3c5_25020' => 'ppa', 'PRCOL_00005689' => 'pco', 'Prupe.1G546200' => 'ppe', 'Prupe.5G147800' => 'ppe', 'Prupe.5G148000' => 'ppe', 'Prupe.5G148100' => 'ppe', 'Psat7g037080' => 'psa', 'PSO017G1192' => 'pso', 'PSO017G1793' => 'pso', 'PSO017G5184' => 'pso', 'PSO017G5448' => 'pso', 'PSO017G7381' => 'pso', 'PSO063G3434' => 'pso', 'PSO170G2491' => 'pso', 'PSO210G4349' => 'pso', 'PSO478G0411' => 'pso', 'PSO478G0728' => 'pso', 'PSO478G0774' => 'pso', 'PSO478G3959' => 'pso', 'PSO782G3695' => 'pso', 'QL05p065630' => 'qlo', 'QL05p065679' => 'qlo', 'QL05p065691' => 'qlo', 'QL05p066027' => 'qlo', 'QL05p066045' => 'qlo', 'QL08p004889' => 'qlo', 'QL08p004897' => 'qlo', 'QL09p002867' => 'qlo', 'QL09p003757' => 'qlo', 'QL09p003769' => 'qlo', 'QL10p002185' => 'qlo', 'QL10p002201' => 'qlo', 'QL10p002217' => 'qlo', 'QL10p002281' => 'qlo', 'QL10p002304' => 'qlo', 'QL10p002314' => 'qlo', 'QL10p002321' => 'qlo', 'QL10p002341' => 'qlo', 'RcHm_v2.0_Chr7g0189551' => 'rch', 'RcHm_v2.0_Chr7g0189561' => 'rch', 'RcHm_v2.0_Chr7g0189581' => 'rch', 'RcHm_v2.0_Chr7g0189691' => 'rch', 'RcHm_v2.0_Chr7g0231461' => 'rch', 'Rhsim01G0064400' => 'rsi', 'Rhsim08G0192100' => 'rsi', 'Rhsim08G0192200' => 'rsi', 'Rhsim08G0192300' => 'rsi', 'Rhsim08G0192400' => 'rsi', 'Rhsim12G0004700' => 'rsi', 'RhsimUnG0162400' => 'rsi', 'Sabra12G0074700' => 'sbr', 'Sabra15G0120600' => 'sbr', 'Sabra15G0120700' => 'sbr', 'Sabra16G0052500' => 'sbr', 'Sabra16G0052600' => 'sbr', 'SalBow5G0306' => 'sbo', 'SalBow5G5213' => 'sbo', 'SalBow5G5353' => 'sbo', 'SalBow6G6004' => 'sbo', 'SalBow6G6815' => 'sbo', 'SalBow7G4282' => 'sbo', 'Sc02g0008160' => 'sci', 'Sc04g0000530' => 'sci', 'Sc10g0010580' => 'sci', 'Sed0003161' => 'sed', 'Sed0005087' => 'sed', 'Sed0021550' => 'sed', 'Sed0026160' => 'sed', 'SEGI_03915' => 'sgi', 'SEGI_09259' => 'sgi', 'SEGI_10005' => 'sgi', 'SEGI_19894' => 'sgi', 'SEGI_27870' => 'sgi', 'SEGI_35942' => 'sgi', 'SEGI_40948' => 'sgi', 'SGA_v2.0_scaffold118G32588' => 'sas', 'SGA_v2.0_scaffold207G41871' => 'sas', 'SGA_v2.0_scaffold24G10631' => 'sas', 'SGA_v2.0_scaffold40G15565' => 'sas', 'SGA_v2.0_scaffold414G51199' => 'sas', 'SHI16736' => 'shi', 'SMO144G0108' => 'smo', 'SMO201G0015' => 'smo', 'SMO229G0038' => 'smo', 'SMO343G0073' => 'smo', 'Solyc03g097440.3' => 'sly', 'Solyc05g015940.2' => 'sly', 'Solyc05g150119.1' => 'sly', 'Solyc06g064650.4' => 'sly', 'Solyc06g072670.3' => 'sly', 'Solyc07g052270.3' => 'sly', 'Sopen03g028200' => 'spe', 'Sopen05g011990' => 'spe', 'Sopen06g023130' => 'spe', 'Sopen06g029040' => 'spe', 'Sopen07g025900' => 'spe', 'Sp6g07380' => 'spa', 'Sp6g12770' => 'spa', 'Sp6g12780' => 'spa', 'Sp6g12870' => 'spa', 'TAR622G0677' => 'tar', 'TAR622G0855' => 'tar', 'TAR628G1441' => 'tar', 'TAR629G0909' => 'tar', 'TAR629G1934' => 'tar', 'THA.LOC104803153' => 'tha', 'THA.LOC104806756' => 'tha', 'THA.LOC104811572' => 'tha', 'THA.LOC104811573' => 'tha', 'THA.LOC104811575' => 'tha', 'THA.LOC104811576' => 'tha', 'THA.LOC104811579' => 'tha', 'THA.LOC104825026' => 'tha', 'Thecc.03G133100' => 'tca', 'Thecc.03G133200' => 'tca', 'Thecc.03G133300' => 'tca', 'Thecc.03G133400' => 'tca', 'Thecc.03G133500' => 'tca', 'Thecc.03G133600' => 'tca', 'Thecc.08G174000' => 'tca', 'Thhalv10010570m.g' => 'esa', 'Thhalv10011076m.g' => 'esa', 'Thhalv10014225m.g' => 'esa', 'Thhalv10015475m.g' => 'esa', 'Thhalv10015936m.g' => 'esa', 'Thhalv10029315m.g' => 'esa', 'TPR.G12751' => 'tpr', 'TPR.G12865' => 'tpr', 'TPR.G12878' => 'tpr', 'TPR.G12882' => 'tpr', 'TPR.G28661' => 'tpr', 'TPR.G37961' => 'tpr', 'TWI12G1084' => 'twi', 'TWI23G0796' => 'twi', 'TWI23G1260' => 'twi', 'TWI39G0134' => 'twi', 'TWI39G0640' => 'twi', 'TWI39G1229' => 'twi', 'TWI75G1039' => 'twi', 'unitig_22.g6249' => 'ugi', 'unitig_744.g24642' => 'ugi', 'unitig_8.g4890' => 'ugi', 'vmacro19131' => 'vma', 'vmacro19132' => 'vma', 'vmacro19133' => 'vma', 'vmacro19134' => 'vma', 'vmacro22749' => 'vma', 'VMungo0251G1555' => 'vmu', 'VMungo0251G2918' => 'vmu', 'VMungo0464G1807' => 'vmu', 'VMungo1383G3109' => 'vmu', 'Zm00001eb049090' => 'zma', 'Zm00001eb085280' => 'zma', 'Zm00001eb085290' => 'zma', 'Zm00001eb112950' => 'zma', 'Zm00001eb169370' => 'zma', 'Zm00001eb241850' => 'zma', 'Zm00001eb328980' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001095', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001095' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001095', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '559', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001095' ) ), 'genes' => array( 'A01p25900' => 'bna', 'A02p12630' => 'bna', 'A02p12660' => 'bna', 'A02p26790' => 'bna', 'A03p27840' => 'bna', 'A03p28820' => 'bna', 'A03p49400' => 'bna', 'A06p27170' => 'bna', 'A10p08250' => 'bna', 'Aa31LG3G7050' => 'aar', 'Aa31LG4G16130' => 'aar', 'Aa31LG4G16140' => 'aar', 'Aa31LG4G16150' => 'aar', 'Aa31LG4G16160' => 'aar', 'Aa31LG4G16170' => 'aar', 'Aa31LG9G11970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3982' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1644' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.710' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.711' => 'aag', 'Actinidia03508' => 'ach', 'Actinidia18335' => 'ach', 'Actinidia18336' => 'ach', 'Actinidia25557' => 'ach', 'Actinidia25558' => 'ach', 'Actinidia29394' => 'ach', 'Actinidia30626' => 'ach', 'Ah.11g045550' => 'amhyb', 'AL5G26520' => 'aly', 'AL5G26530' => 'aly', 'AL6G43740' => 'aly', 'AL8G24850' => 'aly', 'AL8G24860' => 'aly', 'Aqoxy3G01624' => 'aox', 'Aqoxy5G03266' => 'aox', 'Aqoxy5G03267' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6DPN98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6DVG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L31C0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEL1CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGI3MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPV64N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIY3FB' => 'arhy', 'AT3G47350' => 'ath', 'AT3G47360' => 'ath', 'AT4G10020' => 'ath', 'AT5G50590' => 'ath', 'AT5G50600' => 'ath', 'AT5G50690' => 'ath', 'AT5G50700' => 'ath', 'AT5G50770' => 'ath', 'ATR0582G110' => 'atr', 'ATR0582G184' => 'atr', 'ATR0582G359' => 'atr', 'ATR1089G151' => 'atr', 'Atru.chr13.2428' => 'acertr', 'Atru.chr6.1847' => 'acertr', 'Atru.chr6.1848' => 'acertr', 'AUR62022399' => 'cqu', 'AUR62029572' => 'cqu', 'AUR62029574' => 'cqu', 'AUR62029575' => 'cqu', 'AUR62038844' => 'cqu', 'AUR62038845' => 'cqu', 'AUR62043538' => 'cqu', 'AUR62043949' => 'cqu', 'AUR62043950' => 'cqu', 'AUR62044440' => 'cqu', 'BcaB01g02769' => 'bca', 'BcaB01g02891' => 'bca', 'BcaB05g24037' => 'bca', 'BcaB05g24039' => 'bca', 'BcaB08g35434' => 'bca', 'BcaB08g35435' => 'bca', 'BcaB08g35436' => 'bca', 'BcaC01g01835' => 'bca', 'BcaC01g04695' => 'bca', 'BcaC01g04805' => 'bca', 'BcaC03g14638' => 'bca', 'BcaC03g14640' => 'bca', 'BcaC04g20756' => 'bca', 'BcaC06g33441' => 'bca', 'BolC1t03222H' => 'bol', 'BolC2t08213H' => 'bol', 'BolC2t08215H' => 'bol', 'BolC3t15679H' => 'bol', 'BolC3t15796H' => 'bol', 'BolC3t19431H' => 'bol', 'BolC3t19434H' => 'bol', 'BolC7t45273H' => 'bol', 'BolC9t56830H' => 'bol', 'BraA01t02511Z' => 'bra', 'BraA02t06321Z' => 'bra', 'BraA02t06323Z' => 'bra', 'BraA02t07683Z' => 'bra', 'BraA03t11995Z' => 'bra', 'BraA03t12080Z' => 'bra', 'BraA03t14041Z' => 'bra', 'BraA06t25659Z' => 'bra', 'BraSC35t45976Z' => 'bra', 'C02p20700' => 'bna', 'C02p20720' => 'bna', 'C02p42580' => 'bna', 'C03p33600' => 'bna', 'C03p34840' => 'bna', 'C07p47460' => 'bna', 'C09p39540' => 'bna', 'CAN.G1199.6' => 'can', 'CAN.G208.3' => 'can', 'CAN.G732.19' => 'can', 'CAN.G732.20' => 'can', 'CANSAT25G1304' => 'cansat', 'CANSAT25G1839' => 'cansat', 'CANSAT25G2406' => 'cansat', 'CANSAT25G3170' => 'cansat', 'CANSAT54G0342' => 'cansat', 'CANSAT80G0934' => 'cansat', 'CARHR155940' => 'chi', 'CARHR155950' => 'chi', 'CARHR155960' => 'chi', 'CARHR155970' => 'chi', 'CARHR155980' => 'chi', 'CARHR257560' => 'chi', 'CARHR257660' => 'chi', 'CARHR257670' => 'chi', 'CARHR257680' => 'chi', 'CARHR261020' => 'chi', 'Carub.0005s1342' => 'cru', 'Carub.0006s2857' => 'cru', 'Carub.0008s1069' => 'cru', 'Carub.0008s1070' => 'cru', 'Carub.0008s1076' => 'cru', 'Ca_17563_v3' => 'car', 'Ca_17565_v3' => 'car', 'Ca_24485_v3' => 'car', 'Ca_29728_v3' => 'car', 'CBR_g34613' => 'cbr', 'CBR_g3773' => 'cbr', 'CBR_g55384' => 'cbr', 'Cc00_g13450' => 'ccan', 'Cc00_g13460' => 'ccan', 'Cc04_g09900' => 'ccan', 'Cc10_g09130' => 'ccan', 'CDE05G0572' => 'cde', 'CDE05G1322' => 'cde', 'CDE06G1632' => 'cde', 'Cfa008105' => 'cfa', 'Cfa018766' => 'cfa', 'Cfa018767' => 'cfa', 'Cfa022796' => 'cfa', 'Cfa026947' => 'cfa', 'Ciclev10020750m.g' => 'ccl', 'Ciclev10031927m.g' => 'ccl', 'Ciclev10031969m.g' => 'ccl', 'CiPaw.04G010600' => 'cil', 'CiPaw.11G004800' => 'cil', 'CiPaw.12G004500' => 'cil', 'ClCG03G003920' => 'cla', 'ClCG03G003930' => 'cla', 'ClCG08G000700' => 'cla', 'COL.COLO4_16628' => 'col', 'COL.COLO4_16629' => 'col', 'COL.COLO4_16630' => 'col', 'COL.COLO4_16631' => 'col', 'COL.COLO4_16632' => 'col', 'COL.COLO4_24591' => 'col', 'COL.COLO4_36208' => 'col', 'COL.COLO4_36212' => 'col', 'COL.COLO4_38483' => 'col', 'COL.COLO4_38484' => 'col', 'Cpa.g.sc21.62' => 'cpa', 'Cpa.g.sc4.163' => 'cpa', 'Cpa.g.sc4.164' => 'cpa', 'Cre14.g610501' => 'cre', 'CsaV3_1G009800' => 'csa', 'CsaV3_1G009810' => 'csa', 'CsaV3_1G009820' => 'csa', 'CsaV3_5G040170' => 'csa', 'CSS0007600' => 'camsi', 'CSS0048343' => 'camsi', 'DCAR_003515' => 'dca', 'DCAR_007504' => 'dca', 'DCAR_007505' => 'dca', 'DCAR_007506' => 'dca', 'Dinv09404' => 'din', 'Dinv11697' => 'din', 'Dinv11698' => 'din', 'Dinv11699' => 'din', 'Dinv11700' => 'din', 'Dinv17593' => 'din', 'Duzib068G0050' => 'dzi', 'Duzib084G0960' => 'dzi', 'Duzib205G0420' => 'dzi', 'Duzib205G1402' => 'dzi', 'ECA232G1822' => 'eca', 'ECA232G3537' => 'eca', 'ECA246G0726' => 'eca', 'ECA246G2809' => 'eca', 'ECA246G3720' => 'eca', 'ECA247G2510' => 'eca', 'EL10Ac1g01639' => 'bvu', 'EL10Ac5g11382' => 'bvu', 'Eucgr.B00089' => 'egr', 'Eucgr.B00090' => 'egr', 'Eucgr.F02966' => 'egr', 'Eucgr.K02702' => 'egr', 'Eucgr.K02704' => 'egr', 'FAN04G0017' => 'fan', 'FAN08G1138' => 'fan', 'FAN08G2167' => 'fan', 'FAN08G2188' => 'fan', 'FAN08G3146' => 'fan', 'FAN13G0111' => 'fan', 'FAN18G0295' => 'fan', 'FAN18G1775' => 'fan', 'FvH4_5g08690' => 'fve', 'FvH4_5g08700' => 'fve', 'FvH4_5g08710' => 'fve', 'FvH4_5g08730' => 'fve', 'FvH4_5g33170' => 'fve', 'Glyma.01G227900' => 'gma', 'Glyma.05G203300' => 'gma', 'Glyma.05G203402' => 'gma', 'Glyma.08G010800' => 'gma', 'Glyma.11G015100' => 'gma', 'Gohir.A03G054400' => 'ghi', 'Gohir.A05G238200' => 'ghi', 'Gohir.A07G049400' => 'ghi', 'Gohir.A07G049500' => 'ghi', 'Gohir.A09G247351' => 'ghi', 'Gohir.D03G112500' => 'ghi', 'Gohir.D05G240200' => 'ghi', 'Gohir.D07G053700' => 'ghi', 'Gohir.D07G053800' => 'ghi', 'Gorai.001G056800' => 'gra', 'Gorai.001G056900' => 'gra', 'Gorai.003G118700' => 'gra', 'Gorai.006G272300' => 'gra', 'Gorai.009G249100' => 'gra', 'GSVIVG01000914001' => 'vvi', 'GSVIVG01000915001' => 'vvi', 'GSVIVG01008578001' => 'vvi', 'GSVIVG01008579001' => 'vvi', 'GSVIVG01008580001' => 'vvi', 'GSVIVG01008581001' => 'vvi', 'GSVIVG01024343001' => 'vvi', 'GSVIVG01036430001' => 'vvi', 'HanXRQChr02g0034091' => 'han', 'HanXRQChr02g0034101' => 'han', 'HanXRQChr02g0037041' => 'han', 'HanXRQChr04g0102651' => 'han', 'HanXRQChr05g0128811' => 'han', 'HanXRQChr05g0128821' => 'han', 'HanXRQChr05g0128831' => 'han', 'HanXRQChr05g0128871' => 'han', 'HanXRQChr05g0153801' => 'han', 'HanXRQChr05g0153811' => 'han', 'HanXRQChr06g0174791' => 'han', 'HanXRQChr06g0174801' => 'han', 'HanXRQChr09g0273441' => 'han', 'HanXRQChr09g0273451' => 'han', 'HanXRQChr16g0498301' => 'han', 'HanXRQChr17g0568971' => 'han', 'Haze_07173' => 'cav', 'Haze_07174' => 'cav', 'Haze_13919' => 'cav', 'Hma1.2p1_0004F.1_g003850' => 'hma', 'Hma1.2p1_0004F.1_g003860' => 'hma', 'HPP92_012683' => 'vpl', 'HPP92_012704' => 'vpl', 'HPP92_021693' => 'vpl', 'HPP92_021695' => 'vpl', 'HPP92_021708' => 'vpl', 'HPP92_021710' => 'vpl', 'Hund10128' => 'sun', 'Hund10133' => 'sun', 'Hund10137' => 'sun', 'Lalb_Chr07g0183571' => 'lal', 'Lalb_Chr13g0297181' => 'lal', 'Lalb_Chr16g0376811' => 'lal', 'Lj1A670G40' => 'lonja', 'Lj1A672T41' => 'lonja', 'Lj1A673T41' => 'lonja', 'Lj1A673T42' => 'lonja', 'Lj1A674T84' => 'lonja', 'Lj3C1073T4' => 'lonja', 'Lj4A653G10' => 'lonja', 'Lj4g0008195' => 'lja', 'Lj5C93G10' => 'lonja', 'Lj5C93T8' => 'lonja', 'Lj6A831G20' => 'lonja', 'Lj6C831T0' => 'lonja', 'Lj9A481T51' => 'lonja', 'Lj9A700T93' => 'lonja', 'Lj9C481T7' => 'lonja', 'Lj9C481T9' => 'lonja', 'Lj9P481G32' => 'lonja', 'LjContig00222g0013405' => 'lja', 'Lsat_1_v5_gn_0_29221' => 'lsa', 'Lsat_1_v5_gn_1_25201' => 'lsa', 'Lsat_1_v5_gn_1_32801' => 'lsa', 'Lsat_1_v5_gn_1_32821' => 'lsa', 'Lsat_1_v5_gn_1_32841' => 'lsa', 'Lsat_1_v5_gn_3_31161' => 'lsa', 'Lsat_1_v5_gn_4_82400' => 'lsa', 'Lsat_1_v5_gn_4_82421' => 'lsa', 'Lsat_1_v5_gn_4_82500' => 'lsa', 'Lsat_1_v5_gn_5_11960' => 'lsa', 'Manes.06G121600' => 'mes', 'Manes.06G121700' => 'mes', 'Manes.06G121800' => 'mes', 'Manes.06G121900' => 'mes', 'Manes.18G119600' => 'mes', 'MBI06_g35696_MAGBIO' => 'mbi', 'MBI07_g01983_MAGBIO' => 'mbi', 'MBI07_g01984_MAGBIO' => 'mbi', 'MBI07_g01987_MAGBIO' => 'mbi', 'MBI07_g01993_MAGBIO' => 'mbi', 'MBI07_g01995_MAGBIO' => 'mbi', 'MD08G1214700' => 'mdo', 'MD14G1152800' => 'mdo', 'MD14G1152900' => 'mdo', 'MD14G1153000' => 'mdo', 'MD15G1397600' => 'mdo', 'Medtr5g008850' => 'mtr', 'Medtr8g096580' => 'mtr', 'Medtr8g096610' => 'mtr', 'Medtr8g096620' => 'mtr', 'MELO3C002374.2' => 'cme', 'MELO3C002375.2' => 'cme', 'MELO3C002376.2' => 'cme', 'MELO3C002377.2' => 'cme', 'MELO3C022194.2' => 'cme', 'Migut.C01358' => 'egut', 'Migut.I00555' => 'egut', 'Migut.I00556' => 'egut', 'Nitab4.5_0000021g1040' => 'nta', 'Nitab4.5_0000645g0020' => 'nta', 'Nitab4.5_0000709g0020' => 'nta', 'Nitab4.5_0001257g0050' => 'nta', 'Nitab4.5_0002137g0030' => 'nta', 'Nitab4.5_0002530g0030' => 'nta', 'Nitab4.5_0002654g0160' => 'nta', 'Nitab4.5_0003346g0070' => 'nta', 'Nitab4.5_0003510g0030' => 'nta', 'Nitab4.5_0004761g0040' => 'nta', 'Nitab4.5_0006301g0010' => 'nta', 'Nn1g09839' => 'nnu', 'Nn3g16389' => 'nnu', 'Nn3g16390' => 'nnu', 'Nn3g16391' => 'nnu', 'Nn3g18469' => 'nnu', 'Nn3g18632' => 'nnu', 'Nn4g22248' => 'nnu', 'Nn4g22249' => 'nnu', 'Nn4g24549' => 'nnu', 'Nn4g24798' => 'nnu', 'Nn4g24799' => 'nnu', 'Nn4g24890' => 'nnu', 'Nn7g36853' => 'nnu', 'Oeu006615.1' => 'oeu', 'Oeu022159.1' => 'oeu', 'Oeu025418.1' => 'oeu', 'Oeu028102.1' => 'oeu', 'Oeu058096.1' => 'oeu', 'Os02g0511100' => 'osa', 'Os02g0511400' => 'osa', 'Os03g0842900' => 'osa', 'Os04g0390700' => 'osa', 'Os04g0390800' => 'osa', 'Os11g0499600' => 'osa', 'Os12g0464400' => 'osa', 'Peaxi162Scf00007g00717' => 'pax', 'Peaxi162Scf00078g00032' => 'pax', 'Peaxi162Scf00128g01525' => 'pax', 'Peaxi162Scf00516g00324' => 'pax', 'Peaxi162Scf00961g00312' => 'pax', 'Peaxi162Scf01064g00261' => 'pax', 'PGR031G1561' => 'pgr', 'PGR042G3573' => 'pgr', 'PGR083G2491' => 'pgr', 'PGSC0003DMG400026485' => 'stu', 'PGSC0003DMG400028960' => 'stu', 'PGSC0003DMG400042259' => 'stu', 'PGSC0003DMG401010803' => 'stu', 'PGSC0003DMG402010803' => 'stu', 'PGSC0003DMG402026939' => 'stu', 'Phvul.002G285000' => 'pvu', 'Phvul.002G285100' => 'pvu', 'Phvul.002G285200' => 'pvu', 'Potri.012G101900' => 'ptr', 'Potri.012G102000' => 'ptr', 'Potri.013G100200' => 'ptr', 'Potri.015G099900' => 'ptr', 'Potri.015G100000' => 'ptr', 'Potri.015G100102' => 'ptr', 'Potri.016G048800' => 'ptr', 'Potri.016G048900' => 'ptr', 'Potri.019G073200' => 'ptr', 'Pp3c20_12760' => 'ppa', 'Pp3c5_25020' => 'ppa', 'PRCOL_00005689' => 'pco', 'Prupe.1G546200' => 'ppe', 'Prupe.5G147800' => 'ppe', 'Prupe.5G148000' => 'ppe', 'Prupe.5G148100' => 'ppe', 'Psat7g037080' => 'psa', 'PSO017G1192' => 'pso', 'PSO017G1793' => 'pso', 'PSO017G5184' => 'pso', 'PSO017G5448' => 'pso', 'PSO017G7381' => 'pso', 'PSO063G3434' => 'pso', 'PSO170G2491' => 'pso', 'PSO210G4349' => 'pso', 'PSO478G0411' => 'pso', 'PSO478G0728' => 'pso', 'PSO478G0774' => 'pso', 'PSO478G3959' => 'pso', 'PSO782G3695' => 'pso', 'QL05p065630' => 'qlo', 'QL05p065679' => 'qlo', 'QL05p065691' => 'qlo', 'QL05p066027' => 'qlo', 'QL05p066045' => 'qlo', 'QL08p004889' => 'qlo', 'QL08p004897' => 'qlo', 'QL09p002867' => 'qlo', 'QL09p003757' => 'qlo', 'QL09p003769' => 'qlo', 'QL10p002185' => 'qlo', 'QL10p002201' => 'qlo', 'QL10p002217' => 'qlo', 'QL10p002281' => 'qlo', 'QL10p002304' => 'qlo', 'QL10p002314' => 'qlo', 'QL10p002321' => 'qlo', 'QL10p002341' => 'qlo', 'RcHm_v2.0_Chr7g0189551' => 'rch', 'RcHm_v2.0_Chr7g0189561' => 'rch', 'RcHm_v2.0_Chr7g0189581' => 'rch', 'RcHm_v2.0_Chr7g0189691' => 'rch', 'RcHm_v2.0_Chr7g0231461' => 'rch', 'Rhsim01G0064400' => 'rsi', 'Rhsim08G0192100' => 'rsi', 'Rhsim08G0192200' => 'rsi', 'Rhsim08G0192300' => 'rsi', 'Rhsim08G0192400' => 'rsi', 'Rhsim12G0004700' => 'rsi', 'RhsimUnG0162400' => 'rsi', 'Sabra12G0074700' => 'sbr', 'Sabra15G0120600' => 'sbr', 'Sabra15G0120700' => 'sbr', 'Sabra16G0052500' => 'sbr', 'Sabra16G0052600' => 'sbr', 'SalBow5G0306' => 'sbo', 'SalBow5G5213' => 'sbo', 'SalBow5G5353' => 'sbo', 'SalBow6G6004' => 'sbo', 'SalBow6G6815' => 'sbo', 'SalBow7G4282' => 'sbo', 'Sc02g0008160' => 'sci', 'Sc04g0000530' => 'sci', 'Sc10g0010580' => 'sci', 'Sed0003161' => 'sed', 'Sed0005087' => 'sed', 'Sed0021550' => 'sed', 'Sed0026160' => 'sed', 'SEGI_03915' => 'sgi', 'SEGI_09259' => 'sgi', 'SEGI_10005' => 'sgi', 'SEGI_19894' => 'sgi', 'SEGI_27870' => 'sgi', 'SEGI_35942' => 'sgi', 'SEGI_40948' => 'sgi', 'SGA_v2.0_scaffold118G32588' => 'sas', 'SGA_v2.0_scaffold207G41871' => 'sas', 'SGA_v2.0_scaffold24G10631' => 'sas', 'SGA_v2.0_scaffold40G15565' => 'sas', 'SGA_v2.0_scaffold414G51199' => 'sas', 'SHI16736' => 'shi', 'SMO144G0108' => 'smo', 'SMO201G0015' => 'smo', 'SMO229G0038' => 'smo', 'SMO343G0073' => 'smo', 'Solyc03g097440.3' => 'sly', 'Solyc05g015940.2' => 'sly', 'Solyc05g150119.1' => 'sly', 'Solyc06g064650.4' => 'sly', 'Solyc06g072670.3' => 'sly', 'Solyc07g052270.3' => 'sly', 'Sopen03g028200' => 'spe', 'Sopen05g011990' => 'spe', 'Sopen06g023130' => 'spe', 'Sopen06g029040' => 'spe', 'Sopen07g025900' => 'spe', 'Sp6g07380' => 'spa', 'Sp6g12770' => 'spa', 'Sp6g12780' => 'spa', 'Sp6g12870' => 'spa', 'TAR622G0677' => 'tar', 'TAR622G0855' => 'tar', 'TAR628G1441' => 'tar', 'TAR629G0909' => 'tar', 'TAR629G1934' => 'tar', 'THA.LOC104803153' => 'tha', 'THA.LOC104806756' => 'tha', 'THA.LOC104811572' => 'tha', 'THA.LOC104811573' => 'tha', 'THA.LOC104811575' => 'tha', 'THA.LOC104811576' => 'tha', 'THA.LOC104811579' => 'tha', 'THA.LOC104825026' => 'tha', 'Thecc.03G133100' => 'tca', 'Thecc.03G133200' => 'tca', 'Thecc.03G133300' => 'tca', 'Thecc.03G133400' => 'tca', 'Thecc.03G133500' => 'tca', 'Thecc.03G133600' => 'tca', 'Thecc.08G174000' => 'tca', 'Thhalv10010570m.g' => 'esa', 'Thhalv10011076m.g' => 'esa', 'Thhalv10014225m.g' => 'esa', 'Thhalv10015475m.g' => 'esa', 'Thhalv10015936m.g' => 'esa', 'Thhalv10029315m.g' => 'esa', 'TPR.G12751' => 'tpr', 'TPR.G12865' => 'tpr', 'TPR.G12878' => 'tpr', 'TPR.G12882' => 'tpr', 'TPR.G28661' => 'tpr', 'TPR.G37961' => 'tpr', 'TWI12G1084' => 'twi', 'TWI23G0796' => 'twi', 'TWI23G1260' => 'twi', 'TWI39G0134' => 'twi', 'TWI39G0640' => 'twi', 'TWI39G1229' => 'twi', 'TWI75G1039' => 'twi', 'unitig_22.g6249' => 'ugi', 'unitig_744.g24642' => 'ugi', 'unitig_8.g4890' => 'ugi', 'vmacro19131' => 'vma', 'vmacro19132' => 'vma', 'vmacro19133' => 'vma', 'vmacro19134' => 'vma', 'vmacro22749' => 'vma', 'VMungo0251G1555' => 'vmu', 'VMungo0251G2918' => 'vmu', 'VMungo0464G1807' => 'vmu', 'VMungo1383G3109' => 'vmu', 'Zm00001eb049090' => 'zma', 'Zm00001eb085280' => 'zma', 'Zm00001eb085290' => 'zma', 'Zm00001eb112950' => 'zma', 'Zm00001eb169370' => 'zma', 'Zm00001eb241850' => 'zma', 'Zm00001eb328980' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001095' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001095' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001095' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001095' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001095', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '559', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p25900' => 'bna', 'A02p12630' => 'bna', 'A02p12660' => 'bna', 'A02p26790' => 'bna', 'A03p27840' => 'bna', 'A03p28820' => 'bna', 'A03p49400' => 'bna', 'A06p27170' => 'bna', 'A10p08250' => 'bna', 'Aa31LG3G7050' => 'aar', 'Aa31LG4G16130' => 'aar', 'Aa31LG4G16140' => 'aar', 'Aa31LG4G16150' => 'aar', 'Aa31LG4G16160' => 'aar', 'Aa31LG4G16170' => 'aar', 'Aa31LG9G11970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3982' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1644' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.710' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.711' => 'aag', 'Actinidia03508' => 'ach', 'Actinidia18335' => 'ach', 'Actinidia18336' => 'ach', 'Actinidia25557' => 'ach', 'Actinidia25558' => 'ach', 'Actinidia29394' => 'ach', 'Actinidia30626' => 'ach', 'Ah.11g045550' => 'amhyb', 'AL5G26520' => 'aly', 'AL5G26530' => 'aly', 'AL6G43740' => 'aly', 'AL8G24850' => 'aly', 'AL8G24860' => 'aly', 'Aqoxy3G01624' => 'aox', 'Aqoxy5G03266' => 'aox', 'Aqoxy5G03267' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6DPN98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6DVG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L31C0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEL1CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGI3MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPV64N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIY3FB' => 'arhy', 'AT3G47350' => 'ath', 'AT3G47360' => 'ath', 'AT4G10020' => 'ath', 'AT5G50590' => 'ath', 'AT5G50600' => 'ath', 'AT5G50690' => 'ath', 'AT5G50700' => 'ath', 'AT5G50770' => 'ath', 'ATR0582G110' => 'atr', 'ATR0582G184' => 'atr', 'ATR0582G359' => 'atr', 'ATR1089G151' => 'atr', 'Atru.chr13.2428' => 'acertr', 'Atru.chr6.1847' => 'acertr', 'Atru.chr6.1848' => 'acertr', 'AUR62022399' => 'cqu', 'AUR62029572' => 'cqu', 'AUR62029574' => 'cqu', 'AUR62029575' => 'cqu', 'AUR62038844' => 'cqu', 'AUR62038845' => 'cqu', 'AUR62043538' => 'cqu', 'AUR62043949' => 'cqu', 'AUR62043950' => 'cqu', 'AUR62044440' => 'cqu', 'BcaB01g02769' => 'bca', 'BcaB01g02891' => 'bca', 'BcaB05g24037' => 'bca', 'BcaB05g24039' => 'bca', 'BcaB08g35434' => 'bca', 'BcaB08g35435' => 'bca', 'BcaB08g35436' => 'bca', 'BcaC01g01835' => 'bca', 'BcaC01g04695' => 'bca', 'BcaC01g04805' => 'bca', 'BcaC03g14638' => 'bca', 'BcaC03g14640' => 'bca', 'BcaC04g20756' => 'bca', 'BcaC06g33441' => 'bca', 'BolC1t03222H' => 'bol', 'BolC2t08213H' => 'bol', 'BolC2t08215H' => 'bol', 'BolC3t15679H' => 'bol', 'BolC3t15796H' => 'bol', 'BolC3t19431H' => 'bol', 'BolC3t19434H' => 'bol', 'BolC7t45273H' => 'bol', 'BolC9t56830H' => 'bol', 'BraA01t02511Z' => 'bra', 'BraA02t06321Z' => 'bra', 'BraA02t06323Z' => 'bra', 'BraA02t07683Z' => 'bra', 'BraA03t11995Z' => 'bra', 'BraA03t12080Z' => 'bra', 'BraA03t14041Z' => 'bra', 'BraA06t25659Z' => 'bra', 'BraSC35t45976Z' => 'bra', 'C02p20700' => 'bna', 'C02p20720' => 'bna', 'C02p42580' => 'bna', 'C03p33600' => 'bna', 'C03p34840' => 'bna', 'C07p47460' => 'bna', 'C09p39540' => 'bna', 'CAN.G1199.6' => 'can', 'CAN.G208.3' => 'can', 'CAN.G732.19' => 'can', 'CAN.G732.20' => 'can', 'CANSAT25G1304' => 'cansat', 'CANSAT25G1839' => 'cansat', 'CANSAT25G2406' => 'cansat', 'CANSAT25G3170' => 'cansat', 'CANSAT54G0342' => 'cansat', 'CANSAT80G0934' => 'cansat', 'CARHR155940' => 'chi', 'CARHR155950' => 'chi', 'CARHR155960' => 'chi', 'CARHR155970' => 'chi', 'CARHR155980' => 'chi', 'CARHR257560' => 'chi', 'CARHR257660' => 'chi', 'CARHR257670' => 'chi', 'CARHR257680' => 'chi', 'CARHR261020' => 'chi', 'Carub.0005s1342' => 'cru', 'Carub.0006s2857' => 'cru', 'Carub.0008s1069' => 'cru', 'Carub.0008s1070' => 'cru', 'Carub.0008s1076' => 'cru', 'Ca_17563_v3' => 'car', 'Ca_17565_v3' => 'car', 'Ca_24485_v3' => 'car', 'Ca_29728_v3' => 'car', 'CBR_g34613' => 'cbr', 'CBR_g3773' => 'cbr', 'CBR_g55384' => 'cbr', 'Cc00_g13450' => 'ccan', 'Cc00_g13460' => 'ccan', 'Cc04_g09900' => 'ccan', 'Cc10_g09130' => 'ccan', 'CDE05G0572' => 'cde', 'CDE05G1322' => 'cde', 'CDE06G1632' => 'cde', 'Cfa008105' => 'cfa', 'Cfa018766' => 'cfa', 'Cfa018767' => 'cfa', 'Cfa022796' => 'cfa', 'Cfa026947' => 'cfa', 'Ciclev10020750m.g' => 'ccl', 'Ciclev10031927m.g' => 'ccl', 'Ciclev10031969m.g' => 'ccl', 'CiPaw.04G010600' => 'cil', 'CiPaw.11G004800' => 'cil', 'CiPaw.12G004500' => 'cil', 'ClCG03G003920' => 'cla', 'ClCG03G003930' => 'cla', 'ClCG08G000700' => 'cla', 'COL.COLO4_16628' => 'col', 'COL.COLO4_16629' => 'col', 'COL.COLO4_16630' => 'col', 'COL.COLO4_16631' => 'col', 'COL.COLO4_16632' => 'col', 'COL.COLO4_24591' => 'col', 'COL.COLO4_36208' => 'col', 'COL.COLO4_36212' => 'col', 'COL.COLO4_38483' => 'col', 'COL.COLO4_38484' => 'col', 'Cpa.g.sc21.62' => 'cpa', 'Cpa.g.sc4.163' => 'cpa', 'Cpa.g.sc4.164' => 'cpa', 'Cre14.g610501' => 'cre', 'CsaV3_1G009800' => 'csa', 'CsaV3_1G009810' => 'csa', 'CsaV3_1G009820' => 'csa', 'CsaV3_5G040170' => 'csa', 'CSS0007600' => 'camsi', 'CSS0048343' => 'camsi', 'DCAR_003515' => 'dca', 'DCAR_007504' => 'dca', 'DCAR_007505' => 'dca', 'DCAR_007506' => 'dca', 'Dinv09404' => 'din', 'Dinv11697' => 'din', 'Dinv11698' => 'din', 'Dinv11699' => 'din', 'Dinv11700' => 'din', 'Dinv17593' => 'din', 'Duzib068G0050' => 'dzi', 'Duzib084G0960' => 'dzi', 'Duzib205G0420' => 'dzi', 'Duzib205G1402' => 'dzi', 'ECA232G1822' => 'eca', 'ECA232G3537' => 'eca', 'ECA246G0726' => 'eca', 'ECA246G2809' => 'eca', 'ECA246G3720' => 'eca', 'ECA247G2510' => 'eca', 'EL10Ac1g01639' => 'bvu', 'EL10Ac5g11382' => 'bvu', 'Eucgr.B00089' => 'egr', 'Eucgr.B00090' => 'egr', 'Eucgr.F02966' => 'egr', 'Eucgr.K02702' => 'egr', 'Eucgr.K02704' => 'egr', 'FAN04G0017' => 'fan', 'FAN08G1138' => 'fan', 'FAN08G2167' => 'fan', 'FAN08G2188' => 'fan', 'FAN08G3146' => 'fan', 'FAN13G0111' => 'fan', 'FAN18G0295' => 'fan', 'FAN18G1775' => 'fan', 'FvH4_5g08690' => 'fve', 'FvH4_5g08700' => 'fve', 'FvH4_5g08710' => 'fve', 'FvH4_5g08730' => 'fve', 'FvH4_5g33170' => 'fve', 'Glyma.01G227900' => 'gma', 'Glyma.05G203300' => 'gma', 'Glyma.05G203402' => 'gma', 'Glyma.08G010800' => 'gma', 'Glyma.11G015100' => 'gma', 'Gohir.A03G054400' => 'ghi', 'Gohir.A05G238200' => 'ghi', 'Gohir.A07G049400' => 'ghi', 'Gohir.A07G049500' => 'ghi', 'Gohir.A09G247351' => 'ghi', 'Gohir.D03G112500' => 'ghi', 'Gohir.D05G240200' => 'ghi', 'Gohir.D07G053700' => 'ghi', 'Gohir.D07G053800' => 'ghi', 'Gorai.001G056800' => 'gra', 'Gorai.001G056900' => 'gra', 'Gorai.003G118700' => 'gra', 'Gorai.006G272300' => 'gra', 'Gorai.009G249100' => 'gra', 'GSVIVG01000914001' => 'vvi', 'GSVIVG01000915001' => 'vvi', 'GSVIVG01008578001' => 'vvi', 'GSVIVG01008579001' => 'vvi', 'GSVIVG01008580001' => 'vvi', 'GSVIVG01008581001' => 'vvi', 'GSVIVG01024343001' => 'vvi', 'GSVIVG01036430001' => 'vvi', 'HanXRQChr02g0034091' => 'han', 'HanXRQChr02g0034101' => 'han', 'HanXRQChr02g0037041' => 'han', 'HanXRQChr04g0102651' => 'han', 'HanXRQChr05g0128811' => 'han', 'HanXRQChr05g0128821' => 'han', 'HanXRQChr05g0128831' => 'han', 'HanXRQChr05g0128871' => 'han', 'HanXRQChr05g0153801' => 'han', 'HanXRQChr05g0153811' => 'han', 'HanXRQChr06g0174791' => 'han', 'HanXRQChr06g0174801' => 'han', 'HanXRQChr09g0273441' => 'han', 'HanXRQChr09g0273451' => 'han', 'HanXRQChr16g0498301' => 'han', 'HanXRQChr17g0568971' => 'han', 'Haze_07173' => 'cav', 'Haze_07174' => 'cav', 'Haze_13919' => 'cav', 'Hma1.2p1_0004F.1_g003850' => 'hma', 'Hma1.2p1_0004F.1_g003860' => 'hma', 'HPP92_012683' => 'vpl', 'HPP92_012704' => 'vpl', 'HPP92_021693' => 'vpl', 'HPP92_021695' => 'vpl', 'HPP92_021708' => 'vpl', 'HPP92_021710' => 'vpl', 'Hund10128' => 'sun', 'Hund10133' => 'sun', 'Hund10137' => 'sun', 'Lalb_Chr07g0183571' => 'lal', 'Lalb_Chr13g0297181' => 'lal', 'Lalb_Chr16g0376811' => 'lal', 'Lj1A670G40' => 'lonja', 'Lj1A672T41' => 'lonja', 'Lj1A673T41' => 'lonja', 'Lj1A673T42' => 'lonja', 'Lj1A674T84' => 'lonja', 'Lj3C1073T4' => 'lonja', 'Lj4A653G10' => 'lonja', 'Lj4g0008195' => 'lja', 'Lj5C93G10' => 'lonja', 'Lj5C93T8' => 'lonja', 'Lj6A831G20' => 'lonja', 'Lj6C831T0' => 'lonja', 'Lj9A481T51' => 'lonja', 'Lj9A700T93' => 'lonja', 'Lj9C481T7' => 'lonja', 'Lj9C481T9' => 'lonja', 'Lj9P481G32' => 'lonja', 'LjContig00222g0013405' => 'lja', 'Lsat_1_v5_gn_0_29221' => 'lsa', 'Lsat_1_v5_gn_1_25201' => 'lsa', 'Lsat_1_v5_gn_1_32801' => 'lsa', 'Lsat_1_v5_gn_1_32821' => 'lsa', 'Lsat_1_v5_gn_1_32841' => 'lsa', 'Lsat_1_v5_gn_3_31161' => 'lsa', 'Lsat_1_v5_gn_4_82400' => 'lsa', 'Lsat_1_v5_gn_4_82421' => 'lsa', 'Lsat_1_v5_gn_4_82500' => 'lsa', 'Lsat_1_v5_gn_5_11960' => 'lsa', 'Manes.06G121600' => 'mes', 'Manes.06G121700' => 'mes', 'Manes.06G121800' => 'mes', 'Manes.06G121900' => 'mes', 'Manes.18G119600' => 'mes', 'MBI06_g35696_MAGBIO' => 'mbi', 'MBI07_g01983_MAGBIO' => 'mbi', 'MBI07_g01984_MAGBIO' => 'mbi', 'MBI07_g01987_MAGBIO' => 'mbi', 'MBI07_g01993_MAGBIO' => 'mbi', 'MBI07_g01995_MAGBIO' => 'mbi', 'MD08G1214700' => 'mdo', 'MD14G1152800' => 'mdo', 'MD14G1152900' => 'mdo', 'MD14G1153000' => 'mdo', 'MD15G1397600' => 'mdo', 'Medtr5g008850' => 'mtr', 'Medtr8g096580' => 'mtr', 'Medtr8g096610' => 'mtr', 'Medtr8g096620' => 'mtr', 'MELO3C002374.2' => 'cme', 'MELO3C002375.2' => 'cme', 'MELO3C002376.2' => 'cme', 'MELO3C002377.2' => 'cme', 'MELO3C022194.2' => 'cme', 'Migut.C01358' => 'egut', 'Migut.I00555' => 'egut', 'Migut.I00556' => 'egut', 'Nitab4.5_0000021g1040' => 'nta', 'Nitab4.5_0000645g0020' => 'nta', 'Nitab4.5_0000709g0020' => 'nta', 'Nitab4.5_0001257g0050' => 'nta', 'Nitab4.5_0002137g0030' => 'nta', 'Nitab4.5_0002530g0030' => 'nta', 'Nitab4.5_0002654g0160' => 'nta', 'Nitab4.5_0003346g0070' => 'nta', 'Nitab4.5_0003510g0030' => 'nta', 'Nitab4.5_0004761g0040' => 'nta', 'Nitab4.5_0006301g0010' => 'nta', 'Nn1g09839' => 'nnu', 'Nn3g16389' => 'nnu', 'Nn3g16390' => 'nnu', 'Nn3g16391' => 'nnu', 'Nn3g18469' => 'nnu', 'Nn3g18632' => 'nnu', 'Nn4g22248' => 'nnu', 'Nn4g22249' => 'nnu', 'Nn4g24549' => 'nnu', 'Nn4g24798' => 'nnu', 'Nn4g24799' => 'nnu', 'Nn4g24890' => 'nnu', 'Nn7g36853' => 'nnu', 'Oeu006615.1' => 'oeu', 'Oeu022159.1' => 'oeu', 'Oeu025418.1' => 'oeu', 'Oeu028102.1' => 'oeu', 'Oeu058096.1' => 'oeu', 'Os02g0511100' => 'osa', 'Os02g0511400' => 'osa', 'Os03g0842900' => 'osa', 'Os04g0390700' => 'osa', 'Os04g0390800' => 'osa', 'Os11g0499600' => 'osa', 'Os12g0464400' => 'osa', 'Peaxi162Scf00007g00717' => 'pax', 'Peaxi162Scf00078g00032' => 'pax', 'Peaxi162Scf00128g01525' => 'pax', 'Peaxi162Scf00516g00324' => 'pax', 'Peaxi162Scf00961g00312' => 'pax', 'Peaxi162Scf01064g00261' => 'pax', 'PGR031G1561' => 'pgr', 'PGR042G3573' => 'pgr', 'PGR083G2491' => 'pgr', 'PGSC0003DMG400026485' => 'stu', 'PGSC0003DMG400028960' => 'stu', 'PGSC0003DMG400042259' => 'stu', 'PGSC0003DMG401010803' => 'stu', 'PGSC0003DMG402010803' => 'stu', 'PGSC0003DMG402026939' => 'stu', 'Phvul.002G285000' => 'pvu', 'Phvul.002G285100' => 'pvu', 'Phvul.002G285200' => 'pvu', 'Potri.012G101900' => 'ptr', 'Potri.012G102000' => 'ptr', 'Potri.013G100200' => 'ptr', 'Potri.015G099900' => 'ptr', 'Potri.015G100000' => 'ptr', 'Potri.015G100102' => 'ptr', 'Potri.016G048800' => 'ptr', 'Potri.016G048900' => 'ptr', 'Potri.019G073200' => 'ptr', 'Pp3c20_12760' => 'ppa', 'Pp3c5_25020' => 'ppa', 'PRCOL_00005689' => 'pco', 'Prupe.1G546200' => 'ppe', 'Prupe.5G147800' => 'ppe', 'Prupe.5G148000' => 'ppe', 'Prupe.5G148100' => 'ppe', 'Psat7g037080' => 'psa', 'PSO017G1192' => 'pso', 'PSO017G1793' => 'pso', 'PSO017G5184' => 'pso', 'PSO017G5448' => 'pso', 'PSO017G7381' => 'pso', 'PSO063G3434' => 'pso', 'PSO170G2491' => 'pso', 'PSO210G4349' => 'pso', 'PSO478G0411' => 'pso', 'PSO478G0728' => 'pso', 'PSO478G0774' => 'pso', 'PSO478G3959' => 'pso', 'PSO782G3695' => 'pso', 'QL05p065630' => 'qlo', 'QL05p065679' => 'qlo', 'QL05p065691' => 'qlo', 'QL05p066027' => 'qlo', 'QL05p066045' => 'qlo', 'QL08p004889' => 'qlo', 'QL08p004897' => 'qlo', 'QL09p002867' => 'qlo', 'QL09p003757' => 'qlo', 'QL09p003769' => 'qlo', 'QL10p002185' => 'qlo', 'QL10p002201' => 'qlo', 'QL10p002217' => 'qlo', 'QL10p002281' => 'qlo', 'QL10p002304' => 'qlo', 'QL10p002314' => 'qlo', 'QL10p002321' => 'qlo', 'QL10p002341' => 'qlo', 'RcHm_v2.0_Chr7g0189551' => 'rch', 'RcHm_v2.0_Chr7g0189561' => 'rch', 'RcHm_v2.0_Chr7g0189581' => 'rch', 'RcHm_v2.0_Chr7g0189691' => 'rch', 'RcHm_v2.0_Chr7g0231461' => 'rch', 'Rhsim01G0064400' => 'rsi', 'Rhsim08G0192100' => 'rsi', 'Rhsim08G0192200' => 'rsi', 'Rhsim08G0192300' => 'rsi', 'Rhsim08G0192400' => 'rsi', 'Rhsim12G0004700' => 'rsi', 'RhsimUnG0162400' => 'rsi', 'Sabra12G0074700' => 'sbr', 'Sabra15G0120600' => 'sbr', 'Sabra15G0120700' => 'sbr', 'Sabra16G0052500' => 'sbr', 'Sabra16G0052600' => 'sbr', 'SalBow5G0306' => 'sbo', 'SalBow5G5213' => 'sbo', 'SalBow5G5353' => 'sbo', 'SalBow6G6004' => 'sbo', 'SalBow6G6815' => 'sbo', 'SalBow7G4282' => 'sbo', 'Sc02g0008160' => 'sci', 'Sc04g0000530' => 'sci', 'Sc10g0010580' => 'sci', 'Sed0003161' => 'sed', 'Sed0005087' => 'sed', 'Sed0021550' => 'sed', 'Sed0026160' => 'sed', 'SEGI_03915' => 'sgi', 'SEGI_09259' => 'sgi', 'SEGI_10005' => 'sgi', 'SEGI_19894' => 'sgi', 'SEGI_27870' => 'sgi', 'SEGI_35942' => 'sgi', 'SEGI_40948' => 'sgi', 'SGA_v2.0_scaffold118G32588' => 'sas', 'SGA_v2.0_scaffold207G41871' => 'sas', 'SGA_v2.0_scaffold24G10631' => 'sas', 'SGA_v2.0_scaffold40G15565' => 'sas', 'SGA_v2.0_scaffold414G51199' => 'sas', 'SHI16736' => 'shi', 'SMO144G0108' => 'smo', 'SMO201G0015' => 'smo', 'SMO229G0038' => 'smo', 'SMO343G0073' => 'smo', 'Solyc03g097440.3' => 'sly', 'Solyc05g015940.2' => 'sly', 'Solyc05g150119.1' => 'sly', 'Solyc06g064650.4' => 'sly', 'Solyc06g072670.3' => 'sly', 'Solyc07g052270.3' => 'sly', 'Sopen03g028200' => 'spe', 'Sopen05g011990' => 'spe', 'Sopen06g023130' => 'spe', 'Sopen06g029040' => 'spe', 'Sopen07g025900' => 'spe', 'Sp6g07380' => 'spa', 'Sp6g12770' => 'spa', 'Sp6g12780' => 'spa', 'Sp6g12870' => 'spa', 'TAR622G0677' => 'tar', 'TAR622G0855' => 'tar', 'TAR628G1441' => 'tar', 'TAR629G0909' => 'tar', 'TAR629G1934' => 'tar', 'THA.LOC104803153' => 'tha', 'THA.LOC104806756' => 'tha', 'THA.LOC104811572' => 'tha', 'THA.LOC104811573' => 'tha', 'THA.LOC104811575' => 'tha', 'THA.LOC104811576' => 'tha', 'THA.LOC104811579' => 'tha', 'THA.LOC104825026' => 'tha', 'Thecc.03G133100' => 'tca', 'Thecc.03G133200' => 'tca', 'Thecc.03G133300' => 'tca', 'Thecc.03G133400' => 'tca', 'Thecc.03G133500' => 'tca', 'Thecc.03G133600' => 'tca', 'Thecc.08G174000' => 'tca', 'Thhalv10010570m.g' => 'esa', 'Thhalv10011076m.g' => 'esa', 'Thhalv10014225m.g' => 'esa', 'Thhalv10015475m.g' => 'esa', 'Thhalv10015936m.g' => 'esa', 'Thhalv10029315m.g' => 'esa', 'TPR.G12751' => 'tpr', 'TPR.G12865' => 'tpr', 'TPR.G12878' => 'tpr', 'TPR.G12882' => 'tpr', 'TPR.G28661' => 'tpr', 'TPR.G37961' => 'tpr', 'TWI12G1084' => 'twi', 'TWI23G0796' => 'twi', 'TWI23G1260' => 'twi', 'TWI39G0134' => 'twi', 'TWI39G0640' => 'twi', 'TWI39G1229' => 'twi', 'TWI75G1039' => 'twi', 'unitig_22.g6249' => 'ugi', 'unitig_744.g24642' => 'ugi', 'unitig_8.g4890' => 'ugi', 'vmacro19131' => 'vma', 'vmacro19132' => 'vma', 'vmacro19133' => 'vma', 'vmacro19134' => 'vma', 'vmacro22749' => 'vma', 'VMungo0251G1555' => 'vmu', 'VMungo0251G2918' => 'vmu', 'VMungo0464G1807' => 'vmu', 'VMungo1383G3109' => 'vmu', 'Zm00001eb049090' => 'zma', 'Zm00001eb085280' => 'zma', 'Zm00001eb085290' => 'zma', 'Zm00001eb112950' => 'zma', 'Zm00001eb169370' => 'zma', 'Zm00001eb241850' => 'zma', 'Zm00001eb328980' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001095', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001095' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001095', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '559', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001095' ) ), 'genes' => array( 'A01p25900' => 'bna', 'A02p12630' => 'bna', 'A02p12660' => 'bna', 'A02p26790' => 'bna', 'A03p27840' => 'bna', 'A03p28820' => 'bna', 'A03p49400' => 'bna', 'A06p27170' => 'bna', 'A10p08250' => 'bna', 'Aa31LG3G7050' => 'aar', 'Aa31LG4G16130' => 'aar', 'Aa31LG4G16140' => 'aar', 'Aa31LG4G16150' => 'aar', 'Aa31LG4G16160' => 'aar', 'Aa31LG4G16170' => 'aar', 'Aa31LG9G11970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3982' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1644' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.710' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.711' => 'aag', 'Actinidia03508' => 'ach', 'Actinidia18335' => 'ach', 'Actinidia18336' => 'ach', 'Actinidia25557' => 'ach', 'Actinidia25558' => 'ach', 'Actinidia29394' => 'ach', 'Actinidia30626' => 'ach', 'Ah.11g045550' => 'amhyb', 'AL5G26520' => 'aly', 'AL5G26530' => 'aly', 'AL6G43740' => 'aly', 'AL8G24850' => 'aly', 'AL8G24860' => 'aly', 'Aqoxy3G01624' => 'aox', 'Aqoxy5G03266' => 'aox', 'Aqoxy5G03267' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6DPN98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6DVG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L31C0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEL1CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGI3MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPV64N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIY3FB' => 'arhy', 'AT3G47350' => 'ath', 'AT3G47360' => 'ath', 'AT4G10020' => 'ath', 'AT5G50590' => 'ath', 'AT5G50600' => 'ath', 'AT5G50690' => 'ath', 'AT5G50700' => 'ath', 'AT5G50770' => 'ath', 'ATR0582G110' => 'atr', 'ATR0582G184' => 'atr', 'ATR0582G359' => 'atr', 'ATR1089G151' => 'atr', 'Atru.chr13.2428' => 'acertr', 'Atru.chr6.1847' => 'acertr', 'Atru.chr6.1848' => 'acertr', 'AUR62022399' => 'cqu', 'AUR62029572' => 'cqu', 'AUR62029574' => 'cqu', 'AUR62029575' => 'cqu', 'AUR62038844' => 'cqu', 'AUR62038845' => 'cqu', 'AUR62043538' => 'cqu', 'AUR62043949' => 'cqu', 'AUR62043950' => 'cqu', 'AUR62044440' => 'cqu', 'BcaB01g02769' => 'bca', 'BcaB01g02891' => 'bca', 'BcaB05g24037' => 'bca', 'BcaB05g24039' => 'bca', 'BcaB08g35434' => 'bca', 'BcaB08g35435' => 'bca', 'BcaB08g35436' => 'bca', 'BcaC01g01835' => 'bca', 'BcaC01g04695' => 'bca', 'BcaC01g04805' => 'bca', 'BcaC03g14638' => 'bca', 'BcaC03g14640' => 'bca', 'BcaC04g20756' => 'bca', 'BcaC06g33441' => 'bca', 'BolC1t03222H' => 'bol', 'BolC2t08213H' => 'bol', 'BolC2t08215H' => 'bol', 'BolC3t15679H' => 'bol', 'BolC3t15796H' => 'bol', 'BolC3t19431H' => 'bol', 'BolC3t19434H' => 'bol', 'BolC7t45273H' => 'bol', 'BolC9t56830H' => 'bol', 'BraA01t02511Z' => 'bra', 'BraA02t06321Z' => 'bra', 'BraA02t06323Z' => 'bra', 'BraA02t07683Z' => 'bra', 'BraA03t11995Z' => 'bra', 'BraA03t12080Z' => 'bra', 'BraA03t14041Z' => 'bra', 'BraA06t25659Z' => 'bra', 'BraSC35t45976Z' => 'bra', 'C02p20700' => 'bna', 'C02p20720' => 'bna', 'C02p42580' => 'bna', 'C03p33600' => 'bna', 'C03p34840' => 'bna', 'C07p47460' => 'bna', 'C09p39540' => 'bna', 'CAN.G1199.6' => 'can', 'CAN.G208.3' => 'can', 'CAN.G732.19' => 'can', 'CAN.G732.20' => 'can', 'CANSAT25G1304' => 'cansat', 'CANSAT25G1839' => 'cansat', 'CANSAT25G2406' => 'cansat', 'CANSAT25G3170' => 'cansat', 'CANSAT54G0342' => 'cansat', 'CANSAT80G0934' => 'cansat', 'CARHR155940' => 'chi', 'CARHR155950' => 'chi', 'CARHR155960' => 'chi', 'CARHR155970' => 'chi', 'CARHR155980' => 'chi', 'CARHR257560' => 'chi', 'CARHR257660' => 'chi', 'CARHR257670' => 'chi', 'CARHR257680' => 'chi', 'CARHR261020' => 'chi', 'Carub.0005s1342' => 'cru', 'Carub.0006s2857' => 'cru', 'Carub.0008s1069' => 'cru', 'Carub.0008s1070' => 'cru', 'Carub.0008s1076' => 'cru', 'Ca_17563_v3' => 'car', 'Ca_17565_v3' => 'car', 'Ca_24485_v3' => 'car', 'Ca_29728_v3' => 'car', 'CBR_g34613' => 'cbr', 'CBR_g3773' => 'cbr', 'CBR_g55384' => 'cbr', 'Cc00_g13450' => 'ccan', 'Cc00_g13460' => 'ccan', 'Cc04_g09900' => 'ccan', 'Cc10_g09130' => 'ccan', 'CDE05G0572' => 'cde', 'CDE05G1322' => 'cde', 'CDE06G1632' => 'cde', 'Cfa008105' => 'cfa', 'Cfa018766' => 'cfa', 'Cfa018767' => 'cfa', 'Cfa022796' => 'cfa', 'Cfa026947' => 'cfa', 'Ciclev10020750m.g' => 'ccl', 'Ciclev10031927m.g' => 'ccl', 'Ciclev10031969m.g' => 'ccl', 'CiPaw.04G010600' => 'cil', 'CiPaw.11G004800' => 'cil', 'CiPaw.12G004500' => 'cil', 'ClCG03G003920' => 'cla', 'ClCG03G003930' => 'cla', 'ClCG08G000700' => 'cla', 'COL.COLO4_16628' => 'col', 'COL.COLO4_16629' => 'col', 'COL.COLO4_16630' => 'col', 'COL.COLO4_16631' => 'col', 'COL.COLO4_16632' => 'col', 'COL.COLO4_24591' => 'col', 'COL.COLO4_36208' => 'col', 'COL.COLO4_36212' => 'col', 'COL.COLO4_38483' => 'col', 'COL.COLO4_38484' => 'col', 'Cpa.g.sc21.62' => 'cpa', 'Cpa.g.sc4.163' => 'cpa', 'Cpa.g.sc4.164' => 'cpa', 'Cre14.g610501' => 'cre', 'CsaV3_1G009800' => 'csa', 'CsaV3_1G009810' => 'csa', 'CsaV3_1G009820' => 'csa', 'CsaV3_5G040170' => 'csa', 'CSS0007600' => 'camsi', 'CSS0048343' => 'camsi', 'DCAR_003515' => 'dca', 'DCAR_007504' => 'dca', 'DCAR_007505' => 'dca', 'DCAR_007506' => 'dca', 'Dinv09404' => 'din', 'Dinv11697' => 'din', 'Dinv11698' => 'din', 'Dinv11699' => 'din', 'Dinv11700' => 'din', 'Dinv17593' => 'din', 'Duzib068G0050' => 'dzi', 'Duzib084G0960' => 'dzi', 'Duzib205G0420' => 'dzi', 'Duzib205G1402' => 'dzi', 'ECA232G1822' => 'eca', 'ECA232G3537' => 'eca', 'ECA246G0726' => 'eca', 'ECA246G2809' => 'eca', 'ECA246G3720' => 'eca', 'ECA247G2510' => 'eca', 'EL10Ac1g01639' => 'bvu', 'EL10Ac5g11382' => 'bvu', 'Eucgr.B00089' => 'egr', 'Eucgr.B00090' => 'egr', 'Eucgr.F02966' => 'egr', 'Eucgr.K02702' => 'egr', 'Eucgr.K02704' => 'egr', 'FAN04G0017' => 'fan', 'FAN08G1138' => 'fan', 'FAN08G2167' => 'fan', 'FAN08G2188' => 'fan', 'FAN08G3146' => 'fan', 'FAN13G0111' => 'fan', 'FAN18G0295' => 'fan', 'FAN18G1775' => 'fan', 'FvH4_5g08690' => 'fve', 'FvH4_5g08700' => 'fve', 'FvH4_5g08710' => 'fve', 'FvH4_5g08730' => 'fve', 'FvH4_5g33170' => 'fve', 'Glyma.01G227900' => 'gma', 'Glyma.05G203300' => 'gma', 'Glyma.05G203402' => 'gma', 'Glyma.08G010800' => 'gma', 'Glyma.11G015100' => 'gma', 'Gohir.A03G054400' => 'ghi', 'Gohir.A05G238200' => 'ghi', 'Gohir.A07G049400' => 'ghi', 'Gohir.A07G049500' => 'ghi', 'Gohir.A09G247351' => 'ghi', 'Gohir.D03G112500' => 'ghi', 'Gohir.D05G240200' => 'ghi', 'Gohir.D07G053700' => 'ghi', 'Gohir.D07G053800' => 'ghi', 'Gorai.001G056800' => 'gra', 'Gorai.001G056900' => 'gra', 'Gorai.003G118700' => 'gra', 'Gorai.006G272300' => 'gra', 'Gorai.009G249100' => 'gra', 'GSVIVG01000914001' => 'vvi', 'GSVIVG01000915001' => 'vvi', 'GSVIVG01008578001' => 'vvi', 'GSVIVG01008579001' => 'vvi', 'GSVIVG01008580001' => 'vvi', 'GSVIVG01008581001' => 'vvi', 'GSVIVG01024343001' => 'vvi', 'GSVIVG01036430001' => 'vvi', 'HanXRQChr02g0034091' => 'han', 'HanXRQChr02g0034101' => 'han', 'HanXRQChr02g0037041' => 'han', 'HanXRQChr04g0102651' => 'han', 'HanXRQChr05g0128811' => 'han', 'HanXRQChr05g0128821' => 'han', 'HanXRQChr05g0128831' => 'han', 'HanXRQChr05g0128871' => 'han', 'HanXRQChr05g0153801' => 'han', 'HanXRQChr05g0153811' => 'han', 'HanXRQChr06g0174791' => 'han', 'HanXRQChr06g0174801' => 'han', 'HanXRQChr09g0273441' => 'han', 'HanXRQChr09g0273451' => 'han', 'HanXRQChr16g0498301' => 'han', 'HanXRQChr17g0568971' => 'han', 'Haze_07173' => 'cav', 'Haze_07174' => 'cav', 'Haze_13919' => 'cav', 'Hma1.2p1_0004F.1_g003850' => 'hma', 'Hma1.2p1_0004F.1_g003860' => 'hma', 'HPP92_012683' => 'vpl', 'HPP92_012704' => 'vpl', 'HPP92_021693' => 'vpl', 'HPP92_021695' => 'vpl', 'HPP92_021708' => 'vpl', 'HPP92_021710' => 'vpl', 'Hund10128' => 'sun', 'Hund10133' => 'sun', 'Hund10137' => 'sun', 'Lalb_Chr07g0183571' => 'lal', 'Lalb_Chr13g0297181' => 'lal', 'Lalb_Chr16g0376811' => 'lal', 'Lj1A670G40' => 'lonja', 'Lj1A672T41' => 'lonja', 'Lj1A673T41' => 'lonja', 'Lj1A673T42' => 'lonja', 'Lj1A674T84' => 'lonja', 'Lj3C1073T4' => 'lonja', 'Lj4A653G10' => 'lonja', 'Lj4g0008195' => 'lja', 'Lj5C93G10' => 'lonja', 'Lj5C93T8' => 'lonja', 'Lj6A831G20' => 'lonja', 'Lj6C831T0' => 'lonja', 'Lj9A481T51' => 'lonja', 'Lj9A700T93' => 'lonja', 'Lj9C481T7' => 'lonja', 'Lj9C481T9' => 'lonja', 'Lj9P481G32' => 'lonja', 'LjContig00222g0013405' => 'lja', 'Lsat_1_v5_gn_0_29221' => 'lsa', 'Lsat_1_v5_gn_1_25201' => 'lsa', 'Lsat_1_v5_gn_1_32801' => 'lsa', 'Lsat_1_v5_gn_1_32821' => 'lsa', 'Lsat_1_v5_gn_1_32841' => 'lsa', 'Lsat_1_v5_gn_3_31161' => 'lsa', 'Lsat_1_v5_gn_4_82400' => 'lsa', 'Lsat_1_v5_gn_4_82421' => 'lsa', 'Lsat_1_v5_gn_4_82500' => 'lsa', 'Lsat_1_v5_gn_5_11960' => 'lsa', 'Manes.06G121600' => 'mes', 'Manes.06G121700' => 'mes', 'Manes.06G121800' => 'mes', 'Manes.06G121900' => 'mes', 'Manes.18G119600' => 'mes', 'MBI06_g35696_MAGBIO' => 'mbi', 'MBI07_g01983_MAGBIO' => 'mbi', 'MBI07_g01984_MAGBIO' => 'mbi', 'MBI07_g01987_MAGBIO' => 'mbi', 'MBI07_g01993_MAGBIO' => 'mbi', 'MBI07_g01995_MAGBIO' => 'mbi', 'MD08G1214700' => 'mdo', 'MD14G1152800' => 'mdo', 'MD14G1152900' => 'mdo', 'MD14G1153000' => 'mdo', 'MD15G1397600' => 'mdo', 'Medtr5g008850' => 'mtr', 'Medtr8g096580' => 'mtr', 'Medtr8g096610' => 'mtr', 'Medtr8g096620' => 'mtr', 'MELO3C002374.2' => 'cme', 'MELO3C002375.2' => 'cme', 'MELO3C002376.2' => 'cme', 'MELO3C002377.2' => 'cme', 'MELO3C022194.2' => 'cme', 'Migut.C01358' => 'egut', 'Migut.I00555' => 'egut', 'Migut.I00556' => 'egut', 'Nitab4.5_0000021g1040' => 'nta', 'Nitab4.5_0000645g0020' => 'nta', 'Nitab4.5_0000709g0020' => 'nta', 'Nitab4.5_0001257g0050' => 'nta', 'Nitab4.5_0002137g0030' => 'nta', 'Nitab4.5_0002530g0030' => 'nta', 'Nitab4.5_0002654g0160' => 'nta', 'Nitab4.5_0003346g0070' => 'nta', 'Nitab4.5_0003510g0030' => 'nta', 'Nitab4.5_0004761g0040' => 'nta', 'Nitab4.5_0006301g0010' => 'nta', 'Nn1g09839' => 'nnu', 'Nn3g16389' => 'nnu', 'Nn3g16390' => 'nnu', 'Nn3g16391' => 'nnu', 'Nn3g18469' => 'nnu', 'Nn3g18632' => 'nnu', 'Nn4g22248' => 'nnu', 'Nn4g22249' => 'nnu', 'Nn4g24549' => 'nnu', 'Nn4g24798' => 'nnu', 'Nn4g24799' => 'nnu', 'Nn4g24890' => 'nnu', 'Nn7g36853' => 'nnu', 'Oeu006615.1' => 'oeu', 'Oeu022159.1' => 'oeu', 'Oeu025418.1' => 'oeu', 'Oeu028102.1' => 'oeu', 'Oeu058096.1' => 'oeu', 'Os02g0511100' => 'osa', 'Os02g0511400' => 'osa', 'Os03g0842900' => 'osa', 'Os04g0390700' => 'osa', 'Os04g0390800' => 'osa', 'Os11g0499600' => 'osa', 'Os12g0464400' => 'osa', 'Peaxi162Scf00007g00717' => 'pax', 'Peaxi162Scf00078g00032' => 'pax', 'Peaxi162Scf00128g01525' => 'pax', 'Peaxi162Scf00516g00324' => 'pax', 'Peaxi162Scf00961g00312' => 'pax', 'Peaxi162Scf01064g00261' => 'pax', 'PGR031G1561' => 'pgr', 'PGR042G3573' => 'pgr', 'PGR083G2491' => 'pgr', 'PGSC0003DMG400026485' => 'stu', 'PGSC0003DMG400028960' => 'stu', 'PGSC0003DMG400042259' => 'stu', 'PGSC0003DMG401010803' => 'stu', 'PGSC0003DMG402010803' => 'stu', 'PGSC0003DMG402026939' => 'stu', 'Phvul.002G285000' => 'pvu', 'Phvul.002G285100' => 'pvu', 'Phvul.002G285200' => 'pvu', 'Potri.012G101900' => 'ptr', 'Potri.012G102000' => 'ptr', 'Potri.013G100200' => 'ptr', 'Potri.015G099900' => 'ptr', 'Potri.015G100000' => 'ptr', 'Potri.015G100102' => 'ptr', 'Potri.016G048800' => 'ptr', 'Potri.016G048900' => 'ptr', 'Potri.019G073200' => 'ptr', 'Pp3c20_12760' => 'ppa', 'Pp3c5_25020' => 'ppa', 'PRCOL_00005689' => 'pco', 'Prupe.1G546200' => 'ppe', 'Prupe.5G147800' => 'ppe', 'Prupe.5G148000' => 'ppe', 'Prupe.5G148100' => 'ppe', 'Psat7g037080' => 'psa', 'PSO017G1192' => 'pso', 'PSO017G1793' => 'pso', 'PSO017G5184' => 'pso', 'PSO017G5448' => 'pso', 'PSO017G7381' => 'pso', 'PSO063G3434' => 'pso', 'PSO170G2491' => 'pso', 'PSO210G4349' => 'pso', 'PSO478G0411' => 'pso', 'PSO478G0728' => 'pso', 'PSO478G0774' => 'pso', 'PSO478G3959' => 'pso', 'PSO782G3695' => 'pso', 'QL05p065630' => 'qlo', 'QL05p065679' => 'qlo', 'QL05p065691' => 'qlo', 'QL05p066027' => 'qlo', 'QL05p066045' => 'qlo', 'QL08p004889' => 'qlo', 'QL08p004897' => 'qlo', 'QL09p002867' => 'qlo', 'QL09p003757' => 'qlo', 'QL09p003769' => 'qlo', 'QL10p002185' => 'qlo', 'QL10p002201' => 'qlo', 'QL10p002217' => 'qlo', 'QL10p002281' => 'qlo', 'QL10p002304' => 'qlo', 'QL10p002314' => 'qlo', 'QL10p002321' => 'qlo', 'QL10p002341' => 'qlo', 'RcHm_v2.0_Chr7g0189551' => 'rch', 'RcHm_v2.0_Chr7g0189561' => 'rch', 'RcHm_v2.0_Chr7g0189581' => 'rch', 'RcHm_v2.0_Chr7g0189691' => 'rch', 'RcHm_v2.0_Chr7g0231461' => 'rch', 'Rhsim01G0064400' => 'rsi', 'Rhsim08G0192100' => 'rsi', 'Rhsim08G0192200' => 'rsi', 'Rhsim08G0192300' => 'rsi', 'Rhsim08G0192400' => 'rsi', 'Rhsim12G0004700' => 'rsi', 'RhsimUnG0162400' => 'rsi', 'Sabra12G0074700' => 'sbr', 'Sabra15G0120600' => 'sbr', 'Sabra15G0120700' => 'sbr', 'Sabra16G0052500' => 'sbr', 'Sabra16G0052600' => 'sbr', 'SalBow5G0306' => 'sbo', 'SalBow5G5213' => 'sbo', 'SalBow5G5353' => 'sbo', 'SalBow6G6004' => 'sbo', 'SalBow6G6815' => 'sbo', 'SalBow7G4282' => 'sbo', 'Sc02g0008160' => 'sci', 'Sc04g0000530' => 'sci', 'Sc10g0010580' => 'sci', 'Sed0003161' => 'sed', 'Sed0005087' => 'sed', 'Sed0021550' => 'sed', 'Sed0026160' => 'sed', 'SEGI_03915' => 'sgi', 'SEGI_09259' => 'sgi', 'SEGI_10005' => 'sgi', 'SEGI_19894' => 'sgi', 'SEGI_27870' => 'sgi', 'SEGI_35942' => 'sgi', 'SEGI_40948' => 'sgi', 'SGA_v2.0_scaffold118G32588' => 'sas', 'SGA_v2.0_scaffold207G41871' => 'sas', 'SGA_v2.0_scaffold24G10631' => 'sas', 'SGA_v2.0_scaffold40G15565' => 'sas', 'SGA_v2.0_scaffold414G51199' => 'sas', 'SHI16736' => 'shi', 'SMO144G0108' => 'smo', 'SMO201G0015' => 'smo', 'SMO229G0038' => 'smo', 'SMO343G0073' => 'smo', 'Solyc03g097440.3' => 'sly', 'Solyc05g015940.2' => 'sly', 'Solyc05g150119.1' => 'sly', 'Solyc06g064650.4' => 'sly', 'Solyc06g072670.3' => 'sly', 'Solyc07g052270.3' => 'sly', 'Sopen03g028200' => 'spe', 'Sopen05g011990' => 'spe', 'Sopen06g023130' => 'spe', 'Sopen06g029040' => 'spe', 'Sopen07g025900' => 'spe', 'Sp6g07380' => 'spa', 'Sp6g12770' => 'spa', 'Sp6g12780' => 'spa', 'Sp6g12870' => 'spa', 'TAR622G0677' => 'tar', 'TAR622G0855' => 'tar', 'TAR628G1441' => 'tar', 'TAR629G0909' => 'tar', 'TAR629G1934' => 'tar', 'THA.LOC104803153' => 'tha', 'THA.LOC104806756' => 'tha', 'THA.LOC104811572' => 'tha', 'THA.LOC104811573' => 'tha', 'THA.LOC104811575' => 'tha', 'THA.LOC104811576' => 'tha', 'THA.LOC104811579' => 'tha', 'THA.LOC104825026' => 'tha', 'Thecc.03G133100' => 'tca', 'Thecc.03G133200' => 'tca', 'Thecc.03G133300' => 'tca', 'Thecc.03G133400' => 'tca', 'Thecc.03G133500' => 'tca', 'Thecc.03G133600' => 'tca', 'Thecc.08G174000' => 'tca', 'Thhalv10010570m.g' => 'esa', 'Thhalv10011076m.g' => 'esa', 'Thhalv10014225m.g' => 'esa', 'Thhalv10015475m.g' => 'esa', 'Thhalv10015936m.g' => 'esa', 'Thhalv10029315m.g' => 'esa', 'TPR.G12751' => 'tpr', 'TPR.G12865' => 'tpr', 'TPR.G12878' => 'tpr', 'TPR.G12882' => 'tpr', 'TPR.G28661' => 'tpr', 'TPR.G37961' => 'tpr', 'TWI12G1084' => 'twi', 'TWI23G0796' => 'twi', 'TWI23G1260' => 'twi', 'TWI39G0134' => 'twi', 'TWI39G0640' => 'twi', 'TWI39G1229' => 'twi', 'TWI75G1039' => 'twi', 'unitig_22.g6249' => 'ugi', 'unitig_744.g24642' => 'ugi', 'unitig_8.g4890' => 'ugi', 'vmacro19131' => 'vma', 'vmacro19132' => 'vma', 'vmacro19133' => 'vma', 'vmacro19134' => 'vma', 'vmacro22749' => 'vma', 'VMungo0251G1555' => 'vmu', 'VMungo0251G2918' => 'vmu', 'VMungo0464G1807' => 'vmu', 'VMungo1383G3109' => 'vmu', 'Zm00001eb049090' => 'zma', 'Zm00001eb085280' => 'zma', 'Zm00001eb085290' => 'zma', 'Zm00001eb112950' => 'zma', 'Zm00001eb169370' => 'zma', 'Zm00001eb241850' => 'zma', 'Zm00001eb328980' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001095' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001095' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001095' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001095' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001095', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '559', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p25900' => 'bna', 'A02p12630' => 'bna', 'A02p12660' => 'bna', 'A02p26790' => 'bna', 'A03p27840' => 'bna', 'A03p28820' => 'bna', 'A03p49400' => 'bna', 'A06p27170' => 'bna', 'A10p08250' => 'bna', 'Aa31LG3G7050' => 'aar', 'Aa31LG4G16130' => 'aar', 'Aa31LG4G16140' => 'aar', 'Aa31LG4G16150' => 'aar', 'Aa31LG4G16160' => 'aar', 'Aa31LG4G16170' => 'aar', 'Aa31LG9G11970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3982' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1644' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.710' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.711' => 'aag', 'Actinidia03508' => 'ach', 'Actinidia18335' => 'ach', 'Actinidia18336' => 'ach', 'Actinidia25557' => 'ach', 'Actinidia25558' => 'ach', 'Actinidia29394' => 'ach', 'Actinidia30626' => 'ach', 'Ah.11g045550' => 'amhyb', 'AL5G26520' => 'aly', 'AL5G26530' => 'aly', 'AL6G43740' => 'aly', 'AL8G24850' => 'aly', 'AL8G24860' => 'aly', 'Aqoxy3G01624' => 'aox', 'Aqoxy5G03266' => 'aox', 'Aqoxy5G03267' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6DPN98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6DVG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L31C0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEL1CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGI3MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPV64N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIY3FB' => 'arhy', 'AT3G47350' => 'ath', 'AT3G47360' => 'ath', 'AT4G10020' => 'ath', 'AT5G50590' => 'ath', 'AT5G50600' => 'ath', 'AT5G50690' => 'ath', 'AT5G50700' => 'ath', 'AT5G50770' => 'ath', 'ATR0582G110' => 'atr', 'ATR0582G184' => 'atr', 'ATR0582G359' => 'atr', 'ATR1089G151' => 'atr', 'Atru.chr13.2428' => 'acertr', 'Atru.chr6.1847' => 'acertr', 'Atru.chr6.1848' => 'acertr', 'AUR62022399' => 'cqu', 'AUR62029572' => 'cqu', 'AUR62029574' => 'cqu', 'AUR62029575' => 'cqu', 'AUR62038844' => 'cqu', 'AUR62038845' => 'cqu', 'AUR62043538' => 'cqu', 'AUR62043949' => 'cqu', 'AUR62043950' => 'cqu', 'AUR62044440' => 'cqu', 'BcaB01g02769' => 'bca', 'BcaB01g02891' => 'bca', 'BcaB05g24037' => 'bca', 'BcaB05g24039' => 'bca', 'BcaB08g35434' => 'bca', 'BcaB08g35435' => 'bca', 'BcaB08g35436' => 'bca', 'BcaC01g01835' => 'bca', 'BcaC01g04695' => 'bca', 'BcaC01g04805' => 'bca', 'BcaC03g14638' => 'bca', 'BcaC03g14640' => 'bca', 'BcaC04g20756' => 'bca', 'BcaC06g33441' => 'bca', 'BolC1t03222H' => 'bol', 'BolC2t08213H' => 'bol', 'BolC2t08215H' => 'bol', 'BolC3t15679H' => 'bol', 'BolC3t15796H' => 'bol', 'BolC3t19431H' => 'bol', 'BolC3t19434H' => 'bol', 'BolC7t45273H' => 'bol', 'BolC9t56830H' => 'bol', 'BraA01t02511Z' => 'bra', 'BraA02t06321Z' => 'bra', 'BraA02t06323Z' => 'bra', 'BraA02t07683Z' => 'bra', 'BraA03t11995Z' => 'bra', 'BraA03t12080Z' => 'bra', 'BraA03t14041Z' => 'bra', 'BraA06t25659Z' => 'bra', 'BraSC35t45976Z' => 'bra', 'C02p20700' => 'bna', 'C02p20720' => 'bna', 'C02p42580' => 'bna', 'C03p33600' => 'bna', 'C03p34840' => 'bna', 'C07p47460' => 'bna', 'C09p39540' => 'bna', 'CAN.G1199.6' => 'can', 'CAN.G208.3' => 'can', 'CAN.G732.19' => 'can', 'CAN.G732.20' => 'can', 'CANSAT25G1304' => 'cansat', 'CANSAT25G1839' => 'cansat', 'CANSAT25G2406' => 'cansat', 'CANSAT25G3170' => 'cansat', 'CANSAT54G0342' => 'cansat', 'CANSAT80G0934' => 'cansat', 'CARHR155940' => 'chi', 'CARHR155950' => 'chi', 'CARHR155960' => 'chi', 'CARHR155970' => 'chi', 'CARHR155980' => 'chi', 'CARHR257560' => 'chi', 'CARHR257660' => 'chi', 'CARHR257670' => 'chi', 'CARHR257680' => 'chi', 'CARHR261020' => 'chi', 'Carub.0005s1342' => 'cru', 'Carub.0006s2857' => 'cru', 'Carub.0008s1069' => 'cru', 'Carub.0008s1070' => 'cru', 'Carub.0008s1076' => 'cru', 'Ca_17563_v3' => 'car', 'Ca_17565_v3' => 'car', 'Ca_24485_v3' => 'car', 'Ca_29728_v3' => 'car', 'CBR_g34613' => 'cbr', 'CBR_g3773' => 'cbr', 'CBR_g55384' => 'cbr', 'Cc00_g13450' => 'ccan', 'Cc00_g13460' => 'ccan', 'Cc04_g09900' => 'ccan', 'Cc10_g09130' => 'ccan', 'CDE05G0572' => 'cde', 'CDE05G1322' => 'cde', 'CDE06G1632' => 'cde', 'Cfa008105' => 'cfa', 'Cfa018766' => 'cfa', 'Cfa018767' => 'cfa', 'Cfa022796' => 'cfa', 'Cfa026947' => 'cfa', 'Ciclev10020750m.g' => 'ccl', 'Ciclev10031927m.g' => 'ccl', 'Ciclev10031969m.g' => 'ccl', 'CiPaw.04G010600' => 'cil', 'CiPaw.11G004800' => 'cil', 'CiPaw.12G004500' => 'cil', 'ClCG03G003920' => 'cla', 'ClCG03G003930' => 'cla', 'ClCG08G000700' => 'cla', 'COL.COLO4_16628' => 'col', 'COL.COLO4_16629' => 'col', 'COL.COLO4_16630' => 'col', 'COL.COLO4_16631' => 'col', 'COL.COLO4_16632' => 'col', 'COL.COLO4_24591' => 'col', 'COL.COLO4_36208' => 'col', 'COL.COLO4_36212' => 'col', 'COL.COLO4_38483' => 'col', 'COL.COLO4_38484' => 'col', 'Cpa.g.sc21.62' => 'cpa', 'Cpa.g.sc4.163' => 'cpa', 'Cpa.g.sc4.164' => 'cpa', 'Cre14.g610501' => 'cre', 'CsaV3_1G009800' => 'csa', 'CsaV3_1G009810' => 'csa', 'CsaV3_1G009820' => 'csa', 'CsaV3_5G040170' => 'csa', 'CSS0007600' => 'camsi', 'CSS0048343' => 'camsi', 'DCAR_003515' => 'dca', 'DCAR_007504' => 'dca', 'DCAR_007505' => 'dca', 'DCAR_007506' => 'dca', 'Dinv09404' => 'din', 'Dinv11697' => 'din', 'Dinv11698' => 'din', 'Dinv11699' => 'din', 'Dinv11700' => 'din', 'Dinv17593' => 'din', 'Duzib068G0050' => 'dzi', 'Duzib084G0960' => 'dzi', 'Duzib205G0420' => 'dzi', 'Duzib205G1402' => 'dzi', 'ECA232G1822' => 'eca', 'ECA232G3537' => 'eca', 'ECA246G0726' => 'eca', 'ECA246G2809' => 'eca', 'ECA246G3720' => 'eca', 'ECA247G2510' => 'eca', 'EL10Ac1g01639' => 'bvu', 'EL10Ac5g11382' => 'bvu', 'Eucgr.B00089' => 'egr', 'Eucgr.B00090' => 'egr', 'Eucgr.F02966' => 'egr', 'Eucgr.K02702' => 'egr', 'Eucgr.K02704' => 'egr', 'FAN04G0017' => 'fan', 'FAN08G1138' => 'fan', 'FAN08G2167' => 'fan', 'FAN08G2188' => 'fan', 'FAN08G3146' => 'fan', 'FAN13G0111' => 'fan', 'FAN18G0295' => 'fan', 'FAN18G1775' => 'fan', 'FvH4_5g08690' => 'fve', 'FvH4_5g08700' => 'fve', 'FvH4_5g08710' => 'fve', 'FvH4_5g08730' => 'fve', 'FvH4_5g33170' => 'fve', 'Glyma.01G227900' => 'gma', 'Glyma.05G203300' => 'gma', 'Glyma.05G203402' => 'gma', 'Glyma.08G010800' => 'gma', 'Glyma.11G015100' => 'gma', 'Gohir.A03G054400' => 'ghi', 'Gohir.A05G238200' => 'ghi', 'Gohir.A07G049400' => 'ghi', 'Gohir.A07G049500' => 'ghi', 'Gohir.A09G247351' => 'ghi', 'Gohir.D03G112500' => 'ghi', 'Gohir.D05G240200' => 'ghi', 'Gohir.D07G053700' => 'ghi', 'Gohir.D07G053800' => 'ghi', 'Gorai.001G056800' => 'gra', 'Gorai.001G056900' => 'gra', 'Gorai.003G118700' => 'gra', 'Gorai.006G272300' => 'gra', 'Gorai.009G249100' => 'gra', 'GSVIVG01000914001' => 'vvi', 'GSVIVG01000915001' => 'vvi', 'GSVIVG01008578001' => 'vvi', 'GSVIVG01008579001' => 'vvi', 'GSVIVG01008580001' => 'vvi', 'GSVIVG01008581001' => 'vvi', 'GSVIVG01024343001' => 'vvi', 'GSVIVG01036430001' => 'vvi', 'HanXRQChr02g0034091' => 'han', 'HanXRQChr02g0034101' => 'han', 'HanXRQChr02g0037041' => 'han', 'HanXRQChr04g0102651' => 'han', 'HanXRQChr05g0128811' => 'han', 'HanXRQChr05g0128821' => 'han', 'HanXRQChr05g0128831' => 'han', 'HanXRQChr05g0128871' => 'han', 'HanXRQChr05g0153801' => 'han', 'HanXRQChr05g0153811' => 'han', 'HanXRQChr06g0174791' => 'han', 'HanXRQChr06g0174801' => 'han', 'HanXRQChr09g0273441' => 'han', 'HanXRQChr09g0273451' => 'han', 'HanXRQChr16g0498301' => 'han', 'HanXRQChr17g0568971' => 'han', 'Haze_07173' => 'cav', 'Haze_07174' => 'cav', 'Haze_13919' => 'cav', 'Hma1.2p1_0004F.1_g003850' => 'hma', 'Hma1.2p1_0004F.1_g003860' => 'hma', 'HPP92_012683' => 'vpl', 'HPP92_012704' => 'vpl', 'HPP92_021693' => 'vpl', 'HPP92_021695' => 'vpl', 'HPP92_021708' => 'vpl', 'HPP92_021710' => 'vpl', 'Hund10128' => 'sun', 'Hund10133' => 'sun', 'Hund10137' => 'sun', 'Lalb_Chr07g0183571' => 'lal', 'Lalb_Chr13g0297181' => 'lal', 'Lalb_Chr16g0376811' => 'lal', 'Lj1A670G40' => 'lonja', 'Lj1A672T41' => 'lonja', 'Lj1A673T41' => 'lonja', 'Lj1A673T42' => 'lonja', 'Lj1A674T84' => 'lonja', 'Lj3C1073T4' => 'lonja', 'Lj4A653G10' => 'lonja', 'Lj4g0008195' => 'lja', 'Lj5C93G10' => 'lonja', 'Lj5C93T8' => 'lonja', 'Lj6A831G20' => 'lonja', 'Lj6C831T0' => 'lonja', 'Lj9A481T51' => 'lonja', 'Lj9A700T93' => 'lonja', 'Lj9C481T7' => 'lonja', 'Lj9C481T9' => 'lonja', 'Lj9P481G32' => 'lonja', 'LjContig00222g0013405' => 'lja', 'Lsat_1_v5_gn_0_29221' => 'lsa', 'Lsat_1_v5_gn_1_25201' => 'lsa', 'Lsat_1_v5_gn_1_32801' => 'lsa', 'Lsat_1_v5_gn_1_32821' => 'lsa', 'Lsat_1_v5_gn_1_32841' => 'lsa', 'Lsat_1_v5_gn_3_31161' => 'lsa', 'Lsat_1_v5_gn_4_82400' => 'lsa', 'Lsat_1_v5_gn_4_82421' => 'lsa', 'Lsat_1_v5_gn_4_82500' => 'lsa', 'Lsat_1_v5_gn_5_11960' => 'lsa', 'Manes.06G121600' => 'mes', 'Manes.06G121700' => 'mes', 'Manes.06G121800' => 'mes', 'Manes.06G121900' => 'mes', 'Manes.18G119600' => 'mes', 'MBI06_g35696_MAGBIO' => 'mbi', 'MBI07_g01983_MAGBIO' => 'mbi', 'MBI07_g01984_MAGBIO' => 'mbi', 'MBI07_g01987_MAGBIO' => 'mbi', 'MBI07_g01993_MAGBIO' => 'mbi', 'MBI07_g01995_MAGBIO' => 'mbi', 'MD08G1214700' => 'mdo', 'MD14G1152800' => 'mdo', 'MD14G1152900' => 'mdo', 'MD14G1153000' => 'mdo', 'MD15G1397600' => 'mdo', 'Medtr5g008850' => 'mtr', 'Medtr8g096580' => 'mtr', 'Medtr8g096610' => 'mtr', 'Medtr8g096620' => 'mtr', 'MELO3C002374.2' => 'cme', 'MELO3C002375.2' => 'cme', 'MELO3C002376.2' => 'cme', 'MELO3C002377.2' => 'cme', 'MELO3C022194.2' => 'cme', 'Migut.C01358' => 'egut', 'Migut.I00555' => 'egut', 'Migut.I00556' => 'egut', 'Nitab4.5_0000021g1040' => 'nta', 'Nitab4.5_0000645g0020' => 'nta', 'Nitab4.5_0000709g0020' => 'nta', 'Nitab4.5_0001257g0050' => 'nta', 'Nitab4.5_0002137g0030' => 'nta', 'Nitab4.5_0002530g0030' => 'nta', 'Nitab4.5_0002654g0160' => 'nta', 'Nitab4.5_0003346g0070' => 'nta', 'Nitab4.5_0003510g0030' => 'nta', 'Nitab4.5_0004761g0040' => 'nta', 'Nitab4.5_0006301g0010' => 'nta', 'Nn1g09839' => 'nnu', 'Nn3g16389' => 'nnu', 'Nn3g16390' => 'nnu', 'Nn3g16391' => 'nnu', 'Nn3g18469' => 'nnu', 'Nn3g18632' => 'nnu', 'Nn4g22248' => 'nnu', 'Nn4g22249' => 'nnu', 'Nn4g24549' => 'nnu', 'Nn4g24798' => 'nnu', 'Nn4g24799' => 'nnu', 'Nn4g24890' => 'nnu', 'Nn7g36853' => 'nnu', 'Oeu006615.1' => 'oeu', 'Oeu022159.1' => 'oeu', 'Oeu025418.1' => 'oeu', 'Oeu028102.1' => 'oeu', 'Oeu058096.1' => 'oeu', 'Os02g0511100' => 'osa', 'Os02g0511400' => 'osa', 'Os03g0842900' => 'osa', 'Os04g0390700' => 'osa', 'Os04g0390800' => 'osa', 'Os11g0499600' => 'osa', 'Os12g0464400' => 'osa', 'Peaxi162Scf00007g00717' => 'pax', 'Peaxi162Scf00078g00032' => 'pax', 'Peaxi162Scf00128g01525' => 'pax', 'Peaxi162Scf00516g00324' => 'pax', 'Peaxi162Scf00961g00312' => 'pax', 'Peaxi162Scf01064g00261' => 'pax', 'PGR031G1561' => 'pgr', 'PGR042G3573' => 'pgr', 'PGR083G2491' => 'pgr', 'PGSC0003DMG400026485' => 'stu', 'PGSC0003DMG400028960' => 'stu', 'PGSC0003DMG400042259' => 'stu', 'PGSC0003DMG401010803' => 'stu', 'PGSC0003DMG402010803' => 'stu', 'PGSC0003DMG402026939' => 'stu', 'Phvul.002G285000' => 'pvu', 'Phvul.002G285100' => 'pvu', 'Phvul.002G285200' => 'pvu', 'Potri.012G101900' => 'ptr', 'Potri.012G102000' => 'ptr', 'Potri.013G100200' => 'ptr', 'Potri.015G099900' => 'ptr', 'Potri.015G100000' => 'ptr', 'Potri.015G100102' => 'ptr', 'Potri.016G048800' => 'ptr', 'Potri.016G048900' => 'ptr', 'Potri.019G073200' => 'ptr', 'Pp3c20_12760' => 'ppa', 'Pp3c5_25020' => 'ppa', 'PRCOL_00005689' => 'pco', 'Prupe.1G546200' => 'ppe', 'Prupe.5G147800' => 'ppe', 'Prupe.5G148000' => 'ppe', 'Prupe.5G148100' => 'ppe', 'Psat7g037080' => 'psa', 'PSO017G1192' => 'pso', 'PSO017G1793' => 'pso', 'PSO017G5184' => 'pso', 'PSO017G5448' => 'pso', 'PSO017G7381' => 'pso', 'PSO063G3434' => 'pso', 'PSO170G2491' => 'pso', 'PSO210G4349' => 'pso', 'PSO478G0411' => 'pso', 'PSO478G0728' => 'pso', 'PSO478G0774' => 'pso', 'PSO478G3959' => 'pso', 'PSO782G3695' => 'pso', 'QL05p065630' => 'qlo', 'QL05p065679' => 'qlo', 'QL05p065691' => 'qlo', 'QL05p066027' => 'qlo', 'QL05p066045' => 'qlo', 'QL08p004889' => 'qlo', 'QL08p004897' => 'qlo', 'QL09p002867' => 'qlo', 'QL09p003757' => 'qlo', 'QL09p003769' => 'qlo', 'QL10p002185' => 'qlo', 'QL10p002201' => 'qlo', 'QL10p002217' => 'qlo', 'QL10p002281' => 'qlo', 'QL10p002304' => 'qlo', 'QL10p002314' => 'qlo', 'QL10p002321' => 'qlo', 'QL10p002341' => 'qlo', 'RcHm_v2.0_Chr7g0189551' => 'rch', 'RcHm_v2.0_Chr7g0189561' => 'rch', 'RcHm_v2.0_Chr7g0189581' => 'rch', 'RcHm_v2.0_Chr7g0189691' => 'rch', 'RcHm_v2.0_Chr7g0231461' => 'rch', 'Rhsim01G0064400' => 'rsi', 'Rhsim08G0192100' => 'rsi', 'Rhsim08G0192200' => 'rsi', 'Rhsim08G0192300' => 'rsi', 'Rhsim08G0192400' => 'rsi', 'Rhsim12G0004700' => 'rsi', 'RhsimUnG0162400' => 'rsi', 'Sabra12G0074700' => 'sbr', 'Sabra15G0120600' => 'sbr', 'Sabra15G0120700' => 'sbr', 'Sabra16G0052500' => 'sbr', 'Sabra16G0052600' => 'sbr', 'SalBow5G0306' => 'sbo', 'SalBow5G5213' => 'sbo', 'SalBow5G5353' => 'sbo', 'SalBow6G6004' => 'sbo', 'SalBow6G6815' => 'sbo', 'SalBow7G4282' => 'sbo', 'Sc02g0008160' => 'sci', 'Sc04g0000530' => 'sci', 'Sc10g0010580' => 'sci', 'Sed0003161' => 'sed', 'Sed0005087' => 'sed', 'Sed0021550' => 'sed', 'Sed0026160' => 'sed', 'SEGI_03915' => 'sgi', 'SEGI_09259' => 'sgi', 'SEGI_10005' => 'sgi', 'SEGI_19894' => 'sgi', 'SEGI_27870' => 'sgi', 'SEGI_35942' => 'sgi', 'SEGI_40948' => 'sgi', 'SGA_v2.0_scaffold118G32588' => 'sas', 'SGA_v2.0_scaffold207G41871' => 'sas', 'SGA_v2.0_scaffold24G10631' => 'sas', 'SGA_v2.0_scaffold40G15565' => 'sas', 'SGA_v2.0_scaffold414G51199' => 'sas', 'SHI16736' => 'shi', 'SMO144G0108' => 'smo', 'SMO201G0015' => 'smo', 'SMO229G0038' => 'smo', 'SMO343G0073' => 'smo', 'Solyc03g097440.3' => 'sly', 'Solyc05g015940.2' => 'sly', 'Solyc05g150119.1' => 'sly', 'Solyc06g064650.4' => 'sly', 'Solyc06g072670.3' => 'sly', 'Solyc07g052270.3' => 'sly', 'Sopen03g028200' => 'spe', 'Sopen05g011990' => 'spe', 'Sopen06g023130' => 'spe', 'Sopen06g029040' => 'spe', 'Sopen07g025900' => 'spe', 'Sp6g07380' => 'spa', 'Sp6g12770' => 'spa', 'Sp6g12780' => 'spa', 'Sp6g12870' => 'spa', 'TAR622G0677' => 'tar', 'TAR622G0855' => 'tar', 'TAR628G1441' => 'tar', 'TAR629G0909' => 'tar', 'TAR629G1934' => 'tar', 'THA.LOC104803153' => 'tha', 'THA.LOC104806756' => 'tha', 'THA.LOC104811572' => 'tha', 'THA.LOC104811573' => 'tha', 'THA.LOC104811575' => 'tha', 'THA.LOC104811576' => 'tha', 'THA.LOC104811579' => 'tha', 'THA.LOC104825026' => 'tha', 'Thecc.03G133100' => 'tca', 'Thecc.03G133200' => 'tca', 'Thecc.03G133300' => 'tca', 'Thecc.03G133400' => 'tca', 'Thecc.03G133500' => 'tca', 'Thecc.03G133600' => 'tca', 'Thecc.08G174000' => 'tca', 'Thhalv10010570m.g' => 'esa', 'Thhalv10011076m.g' => 'esa', 'Thhalv10014225m.g' => 'esa', 'Thhalv10015475m.g' => 'esa', 'Thhalv10015936m.g' => 'esa', 'Thhalv10029315m.g' => 'esa', 'TPR.G12751' => 'tpr', 'TPR.G12865' => 'tpr', 'TPR.G12878' => 'tpr', 'TPR.G12882' => 'tpr', 'TPR.G28661' => 'tpr', 'TPR.G37961' => 'tpr', 'TWI12G1084' => 'twi', 'TWI23G0796' => 'twi', 'TWI23G1260' => 'twi', 'TWI39G0134' => 'twi', 'TWI39G0640' => 'twi', 'TWI39G1229' => 'twi', 'TWI75G1039' => 'twi', 'unitig_22.g6249' => 'ugi', 'unitig_744.g24642' => 'ugi', 'unitig_8.g4890' => 'ugi', 'vmacro19131' => 'vma', 'vmacro19132' => 'vma', 'vmacro19133' => 'vma', 'vmacro19134' => 'vma', 'vmacro22749' => 'vma', 'VMungo0251G1555' => 'vmu', 'VMungo0251G2918' => 'vmu', 'VMungo0464G1807' => 'vmu', 'VMungo1383G3109' => 'vmu', 'Zm00001eb049090' => 'zma', 'Zm00001eb085280' => 'zma', 'Zm00001eb085290' => 'zma', 'Zm00001eb112950' => 'zma', 'Zm00001eb169370' => 'zma', 'Zm00001eb241850' => 'zma', 'Zm00001eb328980' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001095', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001095' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001095', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '559', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001095' ) ), 'genes' => array( 'A01p25900' => 'bna', 'A02p12630' => 'bna', 'A02p12660' => 'bna', 'A02p26790' => 'bna', 'A03p27840' => 'bna', 'A03p28820' => 'bna', 'A03p49400' => 'bna', 'A06p27170' => 'bna', 'A10p08250' => 'bna', 'Aa31LG3G7050' => 'aar', 'Aa31LG4G16130' => 'aar', 'Aa31LG4G16140' => 'aar', 'Aa31LG4G16150' => 'aar', 'Aa31LG4G16160' => 'aar', 'Aa31LG4G16170' => 'aar', 'Aa31LG9G11970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3982' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1644' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.710' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.711' => 'aag', 'Actinidia03508' => 'ach', 'Actinidia18335' => 'ach', 'Actinidia18336' => 'ach', 'Actinidia25557' => 'ach', 'Actinidia25558' => 'ach', 'Actinidia29394' => 'ach', 'Actinidia30626' => 'ach', 'Ah.11g045550' => 'amhyb', 'AL5G26520' => 'aly', 'AL5G26530' => 'aly', 'AL6G43740' => 'aly', 'AL8G24850' => 'aly', 'AL8G24860' => 'aly', 'Aqoxy3G01624' => 'aox', 'Aqoxy5G03266' => 'aox', 'Aqoxy5G03267' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6DPN98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6DVG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L31C0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEL1CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGI3MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPV64N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIY3FB' => 'arhy', 'AT3G47350' => 'ath', 'AT3G47360' => 'ath', 'AT4G10020' => 'ath', 'AT5G50590' => 'ath', 'AT5G50600' => 'ath', 'AT5G50690' => 'ath', 'AT5G50700' => 'ath', 'AT5G50770' => 'ath', 'ATR0582G110' => 'atr', 'ATR0582G184' => 'atr', 'ATR0582G359' => 'atr', 'ATR1089G151' => 'atr', 'Atru.chr13.2428' => 'acertr', 'Atru.chr6.1847' => 'acertr', 'Atru.chr6.1848' => 'acertr', 'AUR62022399' => 'cqu', 'AUR62029572' => 'cqu', 'AUR62029574' => 'cqu', 'AUR62029575' => 'cqu', 'AUR62038844' => 'cqu', 'AUR62038845' => 'cqu', 'AUR62043538' => 'cqu', 'AUR62043949' => 'cqu', 'AUR62043950' => 'cqu', 'AUR62044440' => 'cqu', 'BcaB01g02769' => 'bca', 'BcaB01g02891' => 'bca', 'BcaB05g24037' => 'bca', 'BcaB05g24039' => 'bca', 'BcaB08g35434' => 'bca', 'BcaB08g35435' => 'bca', 'BcaB08g35436' => 'bca', 'BcaC01g01835' => 'bca', 'BcaC01g04695' => 'bca', 'BcaC01g04805' => 'bca', 'BcaC03g14638' => 'bca', 'BcaC03g14640' => 'bca', 'BcaC04g20756' => 'bca', 'BcaC06g33441' => 'bca', 'BolC1t03222H' => 'bol', 'BolC2t08213H' => 'bol', 'BolC2t08215H' => 'bol', 'BolC3t15679H' => 'bol', 'BolC3t15796H' => 'bol', 'BolC3t19431H' => 'bol', 'BolC3t19434H' => 'bol', 'BolC7t45273H' => 'bol', 'BolC9t56830H' => 'bol', 'BraA01t02511Z' => 'bra', 'BraA02t06321Z' => 'bra', 'BraA02t06323Z' => 'bra', 'BraA02t07683Z' => 'bra', 'BraA03t11995Z' => 'bra', 'BraA03t12080Z' => 'bra', 'BraA03t14041Z' => 'bra', 'BraA06t25659Z' => 'bra', 'BraSC35t45976Z' => 'bra', 'C02p20700' => 'bna', 'C02p20720' => 'bna', 'C02p42580' => 'bna', 'C03p33600' => 'bna', 'C03p34840' => 'bna', 'C07p47460' => 'bna', 'C09p39540' => 'bna', 'CAN.G1199.6' => 'can', 'CAN.G208.3' => 'can', 'CAN.G732.19' => 'can', 'CAN.G732.20' => 'can', 'CANSAT25G1304' => 'cansat', 'CANSAT25G1839' => 'cansat', 'CANSAT25G2406' => 'cansat', 'CANSAT25G3170' => 'cansat', 'CANSAT54G0342' => 'cansat', 'CANSAT80G0934' => 'cansat', 'CARHR155940' => 'chi', 'CARHR155950' => 'chi', 'CARHR155960' => 'chi', 'CARHR155970' => 'chi', 'CARHR155980' => 'chi', 'CARHR257560' => 'chi', 'CARHR257660' => 'chi', 'CARHR257670' => 'chi', 'CARHR257680' => 'chi', 'CARHR261020' => 'chi', 'Carub.0005s1342' => 'cru', 'Carub.0006s2857' => 'cru', 'Carub.0008s1069' => 'cru', 'Carub.0008s1070' => 'cru', 'Carub.0008s1076' => 'cru', 'Ca_17563_v3' => 'car', 'Ca_17565_v3' => 'car', 'Ca_24485_v3' => 'car', 'Ca_29728_v3' => 'car', 'CBR_g34613' => 'cbr', 'CBR_g3773' => 'cbr', 'CBR_g55384' => 'cbr', 'Cc00_g13450' => 'ccan', 'Cc00_g13460' => 'ccan', 'Cc04_g09900' => 'ccan', 'Cc10_g09130' => 'ccan', 'CDE05G0572' => 'cde', 'CDE05G1322' => 'cde', 'CDE06G1632' => 'cde', 'Cfa008105' => 'cfa', 'Cfa018766' => 'cfa', 'Cfa018767' => 'cfa', 'Cfa022796' => 'cfa', 'Cfa026947' => 'cfa', 'Ciclev10020750m.g' => 'ccl', 'Ciclev10031927m.g' => 'ccl', 'Ciclev10031969m.g' => 'ccl', 'CiPaw.04G010600' => 'cil', 'CiPaw.11G004800' => 'cil', 'CiPaw.12G004500' => 'cil', 'ClCG03G003920' => 'cla', 'ClCG03G003930' => 'cla', 'ClCG08G000700' => 'cla', 'COL.COLO4_16628' => 'col', 'COL.COLO4_16629' => 'col', 'COL.COLO4_16630' => 'col', 'COL.COLO4_16631' => 'col', 'COL.COLO4_16632' => 'col', 'COL.COLO4_24591' => 'col', 'COL.COLO4_36208' => 'col', 'COL.COLO4_36212' => 'col', 'COL.COLO4_38483' => 'col', 'COL.COLO4_38484' => 'col', 'Cpa.g.sc21.62' => 'cpa', 'Cpa.g.sc4.163' => 'cpa', 'Cpa.g.sc4.164' => 'cpa', 'Cre14.g610501' => 'cre', 'CsaV3_1G009800' => 'csa', 'CsaV3_1G009810' => 'csa', 'CsaV3_1G009820' => 'csa', 'CsaV3_5G040170' => 'csa', 'CSS0007600' => 'camsi', 'CSS0048343' => 'camsi', 'DCAR_003515' => 'dca', 'DCAR_007504' => 'dca', 'DCAR_007505' => 'dca', 'DCAR_007506' => 'dca', 'Dinv09404' => 'din', 'Dinv11697' => 'din', 'Dinv11698' => 'din', 'Dinv11699' => 'din', 'Dinv11700' => 'din', 'Dinv17593' => 'din', 'Duzib068G0050' => 'dzi', 'Duzib084G0960' => 'dzi', 'Duzib205G0420' => 'dzi', 'Duzib205G1402' => 'dzi', 'ECA232G1822' => 'eca', 'ECA232G3537' => 'eca', 'ECA246G0726' => 'eca', 'ECA246G2809' => 'eca', 'ECA246G3720' => 'eca', 'ECA247G2510' => 'eca', 'EL10Ac1g01639' => 'bvu', 'EL10Ac5g11382' => 'bvu', 'Eucgr.B00089' => 'egr', 'Eucgr.B00090' => 'egr', 'Eucgr.F02966' => 'egr', 'Eucgr.K02702' => 'egr', 'Eucgr.K02704' => 'egr', 'FAN04G0017' => 'fan', 'FAN08G1138' => 'fan', 'FAN08G2167' => 'fan', 'FAN08G2188' => 'fan', 'FAN08G3146' => 'fan', 'FAN13G0111' => 'fan', 'FAN18G0295' => 'fan', 'FAN18G1775' => 'fan', 'FvH4_5g08690' => 'fve', 'FvH4_5g08700' => 'fve', 'FvH4_5g08710' => 'fve', 'FvH4_5g08730' => 'fve', 'FvH4_5g33170' => 'fve', 'Glyma.01G227900' => 'gma', 'Glyma.05G203300' => 'gma', 'Glyma.05G203402' => 'gma', 'Glyma.08G010800' => 'gma', 'Glyma.11G015100' => 'gma', 'Gohir.A03G054400' => 'ghi', 'Gohir.A05G238200' => 'ghi', 'Gohir.A07G049400' => 'ghi', 'Gohir.A07G049500' => 'ghi', 'Gohir.A09G247351' => 'ghi', 'Gohir.D03G112500' => 'ghi', 'Gohir.D05G240200' => 'ghi', 'Gohir.D07G053700' => 'ghi', 'Gohir.D07G053800' => 'ghi', 'Gorai.001G056800' => 'gra', 'Gorai.001G056900' => 'gra', 'Gorai.003G118700' => 'gra', 'Gorai.006G272300' => 'gra', 'Gorai.009G249100' => 'gra', 'GSVIVG01000914001' => 'vvi', 'GSVIVG01000915001' => 'vvi', 'GSVIVG01008578001' => 'vvi', 'GSVIVG01008579001' => 'vvi', 'GSVIVG01008580001' => 'vvi', 'GSVIVG01008581001' => 'vvi', 'GSVIVG01024343001' => 'vvi', 'GSVIVG01036430001' => 'vvi', 'HanXRQChr02g0034091' => 'han', 'HanXRQChr02g0034101' => 'han', 'HanXRQChr02g0037041' => 'han', 'HanXRQChr04g0102651' => 'han', 'HanXRQChr05g0128811' => 'han', 'HanXRQChr05g0128821' => 'han', 'HanXRQChr05g0128831' => 'han', 'HanXRQChr05g0128871' => 'han', 'HanXRQChr05g0153801' => 'han', 'HanXRQChr05g0153811' => 'han', 'HanXRQChr06g0174791' => 'han', 'HanXRQChr06g0174801' => 'han', 'HanXRQChr09g0273441' => 'han', 'HanXRQChr09g0273451' => 'han', 'HanXRQChr16g0498301' => 'han', 'HanXRQChr17g0568971' => 'han', 'Haze_07173' => 'cav', 'Haze_07174' => 'cav', 'Haze_13919' => 'cav', 'Hma1.2p1_0004F.1_g003850' => 'hma', 'Hma1.2p1_0004F.1_g003860' => 'hma', 'HPP92_012683' => 'vpl', 'HPP92_012704' => 'vpl', 'HPP92_021693' => 'vpl', 'HPP92_021695' => 'vpl', 'HPP92_021708' => 'vpl', 'HPP92_021710' => 'vpl', 'Hund10128' => 'sun', 'Hund10133' => 'sun', 'Hund10137' => 'sun', 'Lalb_Chr07g0183571' => 'lal', 'Lalb_Chr13g0297181' => 'lal', 'Lalb_Chr16g0376811' => 'lal', 'Lj1A670G40' => 'lonja', 'Lj1A672T41' => 'lonja', 'Lj1A673T41' => 'lonja', 'Lj1A673T42' => 'lonja', 'Lj1A674T84' => 'lonja', 'Lj3C1073T4' => 'lonja', 'Lj4A653G10' => 'lonja', 'Lj4g0008195' => 'lja', 'Lj5C93G10' => 'lonja', 'Lj5C93T8' => 'lonja', 'Lj6A831G20' => 'lonja', 'Lj6C831T0' => 'lonja', 'Lj9A481T51' => 'lonja', 'Lj9A700T93' => 'lonja', 'Lj9C481T7' => 'lonja', 'Lj9C481T9' => 'lonja', 'Lj9P481G32' => 'lonja', 'LjContig00222g0013405' => 'lja', 'Lsat_1_v5_gn_0_29221' => 'lsa', 'Lsat_1_v5_gn_1_25201' => 'lsa', 'Lsat_1_v5_gn_1_32801' => 'lsa', 'Lsat_1_v5_gn_1_32821' => 'lsa', 'Lsat_1_v5_gn_1_32841' => 'lsa', 'Lsat_1_v5_gn_3_31161' => 'lsa', 'Lsat_1_v5_gn_4_82400' => 'lsa', 'Lsat_1_v5_gn_4_82421' => 'lsa', 'Lsat_1_v5_gn_4_82500' => 'lsa', 'Lsat_1_v5_gn_5_11960' => 'lsa', 'Manes.06G121600' => 'mes', 'Manes.06G121700' => 'mes', 'Manes.06G121800' => 'mes', 'Manes.06G121900' => 'mes', 'Manes.18G119600' => 'mes', 'MBI06_g35696_MAGBIO' => 'mbi', 'MBI07_g01983_MAGBIO' => 'mbi', 'MBI07_g01984_MAGBIO' => 'mbi', 'MBI07_g01987_MAGBIO' => 'mbi', 'MBI07_g01993_MAGBIO' => 'mbi', 'MBI07_g01995_MAGBIO' => 'mbi', 'MD08G1214700' => 'mdo', 'MD14G1152800' => 'mdo', 'MD14G1152900' => 'mdo', 'MD14G1153000' => 'mdo', 'MD15G1397600' => 'mdo', 'Medtr5g008850' => 'mtr', 'Medtr8g096580' => 'mtr', 'Medtr8g096610' => 'mtr', 'Medtr8g096620' => 'mtr', 'MELO3C002374.2' => 'cme', 'MELO3C002375.2' => 'cme', 'MELO3C002376.2' => 'cme', 'MELO3C002377.2' => 'cme', 'MELO3C022194.2' => 'cme', 'Migut.C01358' => 'egut', 'Migut.I00555' => 'egut', 'Migut.I00556' => 'egut', 'Nitab4.5_0000021g1040' => 'nta', 'Nitab4.5_0000645g0020' => 'nta', 'Nitab4.5_0000709g0020' => 'nta', 'Nitab4.5_0001257g0050' => 'nta', 'Nitab4.5_0002137g0030' => 'nta', 'Nitab4.5_0002530g0030' => 'nta', 'Nitab4.5_0002654g0160' => 'nta', 'Nitab4.5_0003346g0070' => 'nta', 'Nitab4.5_0003510g0030' => 'nta', 'Nitab4.5_0004761g0040' => 'nta', 'Nitab4.5_0006301g0010' => 'nta', 'Nn1g09839' => 'nnu', 'Nn3g16389' => 'nnu', 'Nn3g16390' => 'nnu', 'Nn3g16391' => 'nnu', 'Nn3g18469' => 'nnu', 'Nn3g18632' => 'nnu', 'Nn4g22248' => 'nnu', 'Nn4g22249' => 'nnu', 'Nn4g24549' => 'nnu', 'Nn4g24798' => 'nnu', 'Nn4g24799' => 'nnu', 'Nn4g24890' => 'nnu', 'Nn7g36853' => 'nnu', 'Oeu006615.1' => 'oeu', 'Oeu022159.1' => 'oeu', 'Oeu025418.1' => 'oeu', 'Oeu028102.1' => 'oeu', 'Oeu058096.1' => 'oeu', 'Os02g0511100' => 'osa', 'Os02g0511400' => 'osa', 'Os03g0842900' => 'osa', 'Os04g0390700' => 'osa', 'Os04g0390800' => 'osa', 'Os11g0499600' => 'osa', 'Os12g0464400' => 'osa', 'Peaxi162Scf00007g00717' => 'pax', 'Peaxi162Scf00078g00032' => 'pax', 'Peaxi162Scf00128g01525' => 'pax', 'Peaxi162Scf00516g00324' => 'pax', 'Peaxi162Scf00961g00312' => 'pax', 'Peaxi162Scf01064g00261' => 'pax', 'PGR031G1561' => 'pgr', 'PGR042G3573' => 'pgr', 'PGR083G2491' => 'pgr', 'PGSC0003DMG400026485' => 'stu', 'PGSC0003DMG400028960' => 'stu', 'PGSC0003DMG400042259' => 'stu', 'PGSC0003DMG401010803' => 'stu', 'PGSC0003DMG402010803' => 'stu', 'PGSC0003DMG402026939' => 'stu', 'Phvul.002G285000' => 'pvu', 'Phvul.002G285100' => 'pvu', 'Phvul.002G285200' => 'pvu', 'Potri.012G101900' => 'ptr', 'Potri.012G102000' => 'ptr', 'Potri.013G100200' => 'ptr', 'Potri.015G099900' => 'ptr', 'Potri.015G100000' => 'ptr', 'Potri.015G100102' => 'ptr', 'Potri.016G048800' => 'ptr', 'Potri.016G048900' => 'ptr', 'Potri.019G073200' => 'ptr', 'Pp3c20_12760' => 'ppa', 'Pp3c5_25020' => 'ppa', 'PRCOL_00005689' => 'pco', 'Prupe.1G546200' => 'ppe', 'Prupe.5G147800' => 'ppe', 'Prupe.5G148000' => 'ppe', 'Prupe.5G148100' => 'ppe', 'Psat7g037080' => 'psa', 'PSO017G1192' => 'pso', 'PSO017G1793' => 'pso', 'PSO017G5184' => 'pso', 'PSO017G5448' => 'pso', 'PSO017G7381' => 'pso', 'PSO063G3434' => 'pso', 'PSO170G2491' => 'pso', 'PSO210G4349' => 'pso', 'PSO478G0411' => 'pso', 'PSO478G0728' => 'pso', 'PSO478G0774' => 'pso', 'PSO478G3959' => 'pso', 'PSO782G3695' => 'pso', 'QL05p065630' => 'qlo', 'QL05p065679' => 'qlo', 'QL05p065691' => 'qlo', 'QL05p066027' => 'qlo', 'QL05p066045' => 'qlo', 'QL08p004889' => 'qlo', 'QL08p004897' => 'qlo', 'QL09p002867' => 'qlo', 'QL09p003757' => 'qlo', 'QL09p003769' => 'qlo', 'QL10p002185' => 'qlo', 'QL10p002201' => 'qlo', 'QL10p002217' => 'qlo', 'QL10p002281' => 'qlo', 'QL10p002304' => 'qlo', 'QL10p002314' => 'qlo', 'QL10p002321' => 'qlo', 'QL10p002341' => 'qlo', 'RcHm_v2.0_Chr7g0189551' => 'rch', 'RcHm_v2.0_Chr7g0189561' => 'rch', 'RcHm_v2.0_Chr7g0189581' => 'rch', 'RcHm_v2.0_Chr7g0189691' => 'rch', 'RcHm_v2.0_Chr7g0231461' => 'rch', 'Rhsim01G0064400' => 'rsi', 'Rhsim08G0192100' => 'rsi', 'Rhsim08G0192200' => 'rsi', 'Rhsim08G0192300' => 'rsi', 'Rhsim08G0192400' => 'rsi', 'Rhsim12G0004700' => 'rsi', 'RhsimUnG0162400' => 'rsi', 'Sabra12G0074700' => 'sbr', 'Sabra15G0120600' => 'sbr', 'Sabra15G0120700' => 'sbr', 'Sabra16G0052500' => 'sbr', 'Sabra16G0052600' => 'sbr', 'SalBow5G0306' => 'sbo', 'SalBow5G5213' => 'sbo', 'SalBow5G5353' => 'sbo', 'SalBow6G6004' => 'sbo', 'SalBow6G6815' => 'sbo', 'SalBow7G4282' => 'sbo', 'Sc02g0008160' => 'sci', 'Sc04g0000530' => 'sci', 'Sc10g0010580' => 'sci', 'Sed0003161' => 'sed', 'Sed0005087' => 'sed', 'Sed0021550' => 'sed', 'Sed0026160' => 'sed', 'SEGI_03915' => 'sgi', 'SEGI_09259' => 'sgi', 'SEGI_10005' => 'sgi', 'SEGI_19894' => 'sgi', 'SEGI_27870' => 'sgi', 'SEGI_35942' => 'sgi', 'SEGI_40948' => 'sgi', 'SGA_v2.0_scaffold118G32588' => 'sas', 'SGA_v2.0_scaffold207G41871' => 'sas', 'SGA_v2.0_scaffold24G10631' => 'sas', 'SGA_v2.0_scaffold40G15565' => 'sas', 'SGA_v2.0_scaffold414G51199' => 'sas', 'SHI16736' => 'shi', 'SMO144G0108' => 'smo', 'SMO201G0015' => 'smo', 'SMO229G0038' => 'smo', 'SMO343G0073' => 'smo', 'Solyc03g097440.3' => 'sly', 'Solyc05g015940.2' => 'sly', 'Solyc05g150119.1' => 'sly', 'Solyc06g064650.4' => 'sly', 'Solyc06g072670.3' => 'sly', 'Solyc07g052270.3' => 'sly', 'Sopen03g028200' => 'spe', 'Sopen05g011990' => 'spe', 'Sopen06g023130' => 'spe', 'Sopen06g029040' => 'spe', 'Sopen07g025900' => 'spe', 'Sp6g07380' => 'spa', 'Sp6g12770' => 'spa', 'Sp6g12780' => 'spa', 'Sp6g12870' => 'spa', 'TAR622G0677' => 'tar', 'TAR622G0855' => 'tar', 'TAR628G1441' => 'tar', 'TAR629G0909' => 'tar', 'TAR629G1934' => 'tar', 'THA.LOC104803153' => 'tha', 'THA.LOC104806756' => 'tha', 'THA.LOC104811572' => 'tha', 'THA.LOC104811573' => 'tha', 'THA.LOC104811575' => 'tha', 'THA.LOC104811576' => 'tha', 'THA.LOC104811579' => 'tha', 'THA.LOC104825026' => 'tha', 'Thecc.03G133100' => 'tca', 'Thecc.03G133200' => 'tca', 'Thecc.03G133300' => 'tca', 'Thecc.03G133400' => 'tca', 'Thecc.03G133500' => 'tca', 'Thecc.03G133600' => 'tca', 'Thecc.08G174000' => 'tca', 'Thhalv10010570m.g' => 'esa', 'Thhalv10011076m.g' => 'esa', 'Thhalv10014225m.g' => 'esa', 'Thhalv10015475m.g' => 'esa', 'Thhalv10015936m.g' => 'esa', 'Thhalv10029315m.g' => 'esa', 'TPR.G12751' => 'tpr', 'TPR.G12865' => 'tpr', 'TPR.G12878' => 'tpr', 'TPR.G12882' => 'tpr', 'TPR.G28661' => 'tpr', 'TPR.G37961' => 'tpr', 'TWI12G1084' => 'twi', 'TWI23G0796' => 'twi', 'TWI23G1260' => 'twi', 'TWI39G0134' => 'twi', 'TWI39G0640' => 'twi', 'TWI39G1229' => 'twi', 'TWI75G1039' => 'twi', 'unitig_22.g6249' => 'ugi', 'unitig_744.g24642' => 'ugi', 'unitig_8.g4890' => 'ugi', 'vmacro19131' => 'vma', 'vmacro19132' => 'vma', 'vmacro19133' => 'vma', 'vmacro19134' => 'vma', 'vmacro22749' => 'vma', 'VMungo0251G1555' => 'vmu', 'VMungo0251G2918' => 'vmu', 'VMungo0464G1807' => 'vmu', 'VMungo1383G3109' => 'vmu', 'Zm00001eb049090' => 'zma', 'Zm00001eb085280' => 'zma', 'Zm00001eb085290' => 'zma', 'Zm00001eb112950' => 'zma', 'Zm00001eb169370' => 'zma', 'Zm00001eb241850' => 'zma', 'Zm00001eb328980' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001095' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001095' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001095' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001095' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001095', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '559', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p25900' => 'bna', 'A02p12630' => 'bna', 'A02p12660' => 'bna', 'A02p26790' => 'bna', 'A03p27840' => 'bna', 'A03p28820' => 'bna', 'A03p49400' => 'bna', 'A06p27170' => 'bna', 'A10p08250' => 'bna', 'Aa31LG3G7050' => 'aar', 'Aa31LG4G16130' => 'aar', 'Aa31LG4G16140' => 'aar', 'Aa31LG4G16150' => 'aar', 'Aa31LG4G16160' => 'aar', 'Aa31LG4G16170' => 'aar', 'Aa31LG9G11970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3982' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1644' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.710' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.711' => 'aag', 'Actinidia03508' => 'ach', 'Actinidia18335' => 'ach', 'Actinidia18336' => 'ach', 'Actinidia25557' => 'ach', 'Actinidia25558' => 'ach', 'Actinidia29394' => 'ach', 'Actinidia30626' => 'ach', 'Ah.11g045550' => 'amhyb', 'AL5G26520' => 'aly', 'AL5G26530' => 'aly', 'AL6G43740' => 'aly', 'AL8G24850' => 'aly', 'AL8G24860' => 'aly', 'Aqoxy3G01624' => 'aox', 'Aqoxy5G03266' => 'aox', 'Aqoxy5G03267' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6DPN98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6DVG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L31C0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEL1CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGI3MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPV64N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIY3FB' => 'arhy', 'AT3G47350' => 'ath', 'AT3G47360' => 'ath', 'AT4G10020' => 'ath', 'AT5G50590' => 'ath', 'AT5G50600' => 'ath', 'AT5G50690' => 'ath', 'AT5G50700' => 'ath', 'AT5G50770' => 'ath', 'ATR0582G110' => 'atr', 'ATR0582G184' => 'atr', 'ATR0582G359' => 'atr', 'ATR1089G151' => 'atr', 'Atru.chr13.2428' => 'acertr', 'Atru.chr6.1847' => 'acertr', 'Atru.chr6.1848' => 'acertr', 'AUR62022399' => 'cqu', 'AUR62029572' => 'cqu', 'AUR62029574' => 'cqu', 'AUR62029575' => 'cqu', 'AUR62038844' => 'cqu', 'AUR62038845' => 'cqu', 'AUR62043538' => 'cqu', 'AUR62043949' => 'cqu', 'AUR62043950' => 'cqu', 'AUR62044440' => 'cqu', 'BcaB01g02769' => 'bca', 'BcaB01g02891' => 'bca', 'BcaB05g24037' => 'bca', 'BcaB05g24039' => 'bca', 'BcaB08g35434' => 'bca', 'BcaB08g35435' => 'bca', 'BcaB08g35436' => 'bca', 'BcaC01g01835' => 'bca', 'BcaC01g04695' => 'bca', 'BcaC01g04805' => 'bca', 'BcaC03g14638' => 'bca', 'BcaC03g14640' => 'bca', 'BcaC04g20756' => 'bca', 'BcaC06g33441' => 'bca', 'BolC1t03222H' => 'bol', 'BolC2t08213H' => 'bol', 'BolC2t08215H' => 'bol', 'BolC3t15679H' => 'bol', 'BolC3t15796H' => 'bol', 'BolC3t19431H' => 'bol', 'BolC3t19434H' => 'bol', 'BolC7t45273H' => 'bol', 'BolC9t56830H' => 'bol', 'BraA01t02511Z' => 'bra', 'BraA02t06321Z' => 'bra', 'BraA02t06323Z' => 'bra', 'BraA02t07683Z' => 'bra', 'BraA03t11995Z' => 'bra', 'BraA03t12080Z' => 'bra', 'BraA03t14041Z' => 'bra', 'BraA06t25659Z' => 'bra', 'BraSC35t45976Z' => 'bra', 'C02p20700' => 'bna', 'C02p20720' => 'bna', 'C02p42580' => 'bna', 'C03p33600' => 'bna', 'C03p34840' => 'bna', 'C07p47460' => 'bna', 'C09p39540' => 'bna', 'CAN.G1199.6' => 'can', 'CAN.G208.3' => 'can', 'CAN.G732.19' => 'can', 'CAN.G732.20' => 'can', 'CANSAT25G1304' => 'cansat', 'CANSAT25G1839' => 'cansat', 'CANSAT25G2406' => 'cansat', 'CANSAT25G3170' => 'cansat', 'CANSAT54G0342' => 'cansat', 'CANSAT80G0934' => 'cansat', 'CARHR155940' => 'chi', 'CARHR155950' => 'chi', 'CARHR155960' => 'chi', 'CARHR155970' => 'chi', 'CARHR155980' => 'chi', 'CARHR257560' => 'chi', 'CARHR257660' => 'chi', 'CARHR257670' => 'chi', 'CARHR257680' => 'chi', 'CARHR261020' => 'chi', 'Carub.0005s1342' => 'cru', 'Carub.0006s2857' => 'cru', 'Carub.0008s1069' => 'cru', 'Carub.0008s1070' => 'cru', 'Carub.0008s1076' => 'cru', 'Ca_17563_v3' => 'car', 'Ca_17565_v3' => 'car', 'Ca_24485_v3' => 'car', 'Ca_29728_v3' => 'car', 'CBR_g34613' => 'cbr', 'CBR_g3773' => 'cbr', 'CBR_g55384' => 'cbr', 'Cc00_g13450' => 'ccan', 'Cc00_g13460' => 'ccan', 'Cc04_g09900' => 'ccan', 'Cc10_g09130' => 'ccan', 'CDE05G0572' => 'cde', 'CDE05G1322' => 'cde', 'CDE06G1632' => 'cde', 'Cfa008105' => 'cfa', 'Cfa018766' => 'cfa', 'Cfa018767' => 'cfa', 'Cfa022796' => 'cfa', 'Cfa026947' => 'cfa', 'Ciclev10020750m.g' => 'ccl', 'Ciclev10031927m.g' => 'ccl', 'Ciclev10031969m.g' => 'ccl', 'CiPaw.04G010600' => 'cil', 'CiPaw.11G004800' => 'cil', 'CiPaw.12G004500' => 'cil', 'ClCG03G003920' => 'cla', 'ClCG03G003930' => 'cla', 'ClCG08G000700' => 'cla', 'COL.COLO4_16628' => 'col', 'COL.COLO4_16629' => 'col', 'COL.COLO4_16630' => 'col', 'COL.COLO4_16631' => 'col', 'COL.COLO4_16632' => 'col', 'COL.COLO4_24591' => 'col', 'COL.COLO4_36208' => 'col', 'COL.COLO4_36212' => 'col', 'COL.COLO4_38483' => 'col', 'COL.COLO4_38484' => 'col', 'Cpa.g.sc21.62' => 'cpa', 'Cpa.g.sc4.163' => 'cpa', 'Cpa.g.sc4.164' => 'cpa', 'Cre14.g610501' => 'cre', 'CsaV3_1G009800' => 'csa', 'CsaV3_1G009810' => 'csa', 'CsaV3_1G009820' => 'csa', 'CsaV3_5G040170' => 'csa', 'CSS0007600' => 'camsi', 'CSS0048343' => 'camsi', 'DCAR_003515' => 'dca', 'DCAR_007504' => 'dca', 'DCAR_007505' => 'dca', 'DCAR_007506' => 'dca', 'Dinv09404' => 'din', 'Dinv11697' => 'din', 'Dinv11698' => 'din', 'Dinv11699' => 'din', 'Dinv11700' => 'din', 'Dinv17593' => 'din', 'Duzib068G0050' => 'dzi', 'Duzib084G0960' => 'dzi', 'Duzib205G0420' => 'dzi', 'Duzib205G1402' => 'dzi', 'ECA232G1822' => 'eca', 'ECA232G3537' => 'eca', 'ECA246G0726' => 'eca', 'ECA246G2809' => 'eca', 'ECA246G3720' => 'eca', 'ECA247G2510' => 'eca', 'EL10Ac1g01639' => 'bvu', 'EL10Ac5g11382' => 'bvu', 'Eucgr.B00089' => 'egr', 'Eucgr.B00090' => 'egr', 'Eucgr.F02966' => 'egr', 'Eucgr.K02702' => 'egr', 'Eucgr.K02704' => 'egr', 'FAN04G0017' => 'fan', 'FAN08G1138' => 'fan', 'FAN08G2167' => 'fan', 'FAN08G2188' => 'fan', 'FAN08G3146' => 'fan', 'FAN13G0111' => 'fan', 'FAN18G0295' => 'fan', 'FAN18G1775' => 'fan', 'FvH4_5g08690' => 'fve', 'FvH4_5g08700' => 'fve', 'FvH4_5g08710' => 'fve', 'FvH4_5g08730' => 'fve', 'FvH4_5g33170' => 'fve', 'Glyma.01G227900' => 'gma', 'Glyma.05G203300' => 'gma', 'Glyma.05G203402' => 'gma', 'Glyma.08G010800' => 'gma', 'Glyma.11G015100' => 'gma', 'Gohir.A03G054400' => 'ghi', 'Gohir.A05G238200' => 'ghi', 'Gohir.A07G049400' => 'ghi', 'Gohir.A07G049500' => 'ghi', 'Gohir.A09G247351' => 'ghi', 'Gohir.D03G112500' => 'ghi', 'Gohir.D05G240200' => 'ghi', 'Gohir.D07G053700' => 'ghi', 'Gohir.D07G053800' => 'ghi', 'Gorai.001G056800' => 'gra', 'Gorai.001G056900' => 'gra', 'Gorai.003G118700' => 'gra', 'Gorai.006G272300' => 'gra', 'Gorai.009G249100' => 'gra', 'GSVIVG01000914001' => 'vvi', 'GSVIVG01000915001' => 'vvi', 'GSVIVG01008578001' => 'vvi', 'GSVIVG01008579001' => 'vvi', 'GSVIVG01008580001' => 'vvi', 'GSVIVG01008581001' => 'vvi', 'GSVIVG01024343001' => 'vvi', 'GSVIVG01036430001' => 'vvi', 'HanXRQChr02g0034091' => 'han', 'HanXRQChr02g0034101' => 'han', 'HanXRQChr02g0037041' => 'han', 'HanXRQChr04g0102651' => 'han', 'HanXRQChr05g0128811' => 'han', 'HanXRQChr05g0128821' => 'han', 'HanXRQChr05g0128831' => 'han', 'HanXRQChr05g0128871' => 'han', 'HanXRQChr05g0153801' => 'han', 'HanXRQChr05g0153811' => 'han', 'HanXRQChr06g0174791' => 'han', 'HanXRQChr06g0174801' => 'han', 'HanXRQChr09g0273441' => 'han', 'HanXRQChr09g0273451' => 'han', 'HanXRQChr16g0498301' => 'han', 'HanXRQChr17g0568971' => 'han', 'Haze_07173' => 'cav', 'Haze_07174' => 'cav', 'Haze_13919' => 'cav', 'Hma1.2p1_0004F.1_g003850' => 'hma', 'Hma1.2p1_0004F.1_g003860' => 'hma', 'HPP92_012683' => 'vpl', 'HPP92_012704' => 'vpl', 'HPP92_021693' => 'vpl', 'HPP92_021695' => 'vpl', 'HPP92_021708' => 'vpl', 'HPP92_021710' => 'vpl', 'Hund10128' => 'sun', 'Hund10133' => 'sun', 'Hund10137' => 'sun', 'Lalb_Chr07g0183571' => 'lal', 'Lalb_Chr13g0297181' => 'lal', 'Lalb_Chr16g0376811' => 'lal', 'Lj1A670G40' => 'lonja', 'Lj1A672T41' => 'lonja', 'Lj1A673T41' => 'lonja', 'Lj1A673T42' => 'lonja', 'Lj1A674T84' => 'lonja', 'Lj3C1073T4' => 'lonja', 'Lj4A653G10' => 'lonja', 'Lj4g0008195' => 'lja', 'Lj5C93G10' => 'lonja', 'Lj5C93T8' => 'lonja', 'Lj6A831G20' => 'lonja', 'Lj6C831T0' => 'lonja', 'Lj9A481T51' => 'lonja', 'Lj9A700T93' => 'lonja', 'Lj9C481T7' => 'lonja', 'Lj9C481T9' => 'lonja', 'Lj9P481G32' => 'lonja', 'LjContig00222g0013405' => 'lja', 'Lsat_1_v5_gn_0_29221' => 'lsa', 'Lsat_1_v5_gn_1_25201' => 'lsa', 'Lsat_1_v5_gn_1_32801' => 'lsa', 'Lsat_1_v5_gn_1_32821' => 'lsa', 'Lsat_1_v5_gn_1_32841' => 'lsa', 'Lsat_1_v5_gn_3_31161' => 'lsa', 'Lsat_1_v5_gn_4_82400' => 'lsa', 'Lsat_1_v5_gn_4_82421' => 'lsa', 'Lsat_1_v5_gn_4_82500' => 'lsa', 'Lsat_1_v5_gn_5_11960' => 'lsa', 'Manes.06G121600' => 'mes', 'Manes.06G121700' => 'mes', 'Manes.06G121800' => 'mes', 'Manes.06G121900' => 'mes', 'Manes.18G119600' => 'mes', 'MBI06_g35696_MAGBIO' => 'mbi', 'MBI07_g01983_MAGBIO' => 'mbi', 'MBI07_g01984_MAGBIO' => 'mbi', 'MBI07_g01987_MAGBIO' => 'mbi', 'MBI07_g01993_MAGBIO' => 'mbi', 'MBI07_g01995_MAGBIO' => 'mbi', 'MD08G1214700' => 'mdo', 'MD14G1152800' => 'mdo', 'MD14G1152900' => 'mdo', 'MD14G1153000' => 'mdo', 'MD15G1397600' => 'mdo', 'Medtr5g008850' => 'mtr', 'Medtr8g096580' => 'mtr', 'Medtr8g096610' => 'mtr', 'Medtr8g096620' => 'mtr', 'MELO3C002374.2' => 'cme', 'MELO3C002375.2' => 'cme', 'MELO3C002376.2' => 'cme', 'MELO3C002377.2' => 'cme', 'MELO3C022194.2' => 'cme', 'Migut.C01358' => 'egut', 'Migut.I00555' => 'egut', 'Migut.I00556' => 'egut', 'Nitab4.5_0000021g1040' => 'nta', 'Nitab4.5_0000645g0020' => 'nta', 'Nitab4.5_0000709g0020' => 'nta', 'Nitab4.5_0001257g0050' => 'nta', 'Nitab4.5_0002137g0030' => 'nta', 'Nitab4.5_0002530g0030' => 'nta', 'Nitab4.5_0002654g0160' => 'nta', 'Nitab4.5_0003346g0070' => 'nta', 'Nitab4.5_0003510g0030' => 'nta', 'Nitab4.5_0004761g0040' => 'nta', 'Nitab4.5_0006301g0010' => 'nta', 'Nn1g09839' => 'nnu', 'Nn3g16389' => 'nnu', 'Nn3g16390' => 'nnu', 'Nn3g16391' => 'nnu', 'Nn3g18469' => 'nnu', 'Nn3g18632' => 'nnu', 'Nn4g22248' => 'nnu', 'Nn4g22249' => 'nnu', 'Nn4g24549' => 'nnu', 'Nn4g24798' => 'nnu', 'Nn4g24799' => 'nnu', 'Nn4g24890' => 'nnu', 'Nn7g36853' => 'nnu', 'Oeu006615.1' => 'oeu', 'Oeu022159.1' => 'oeu', 'Oeu025418.1' => 'oeu', 'Oeu028102.1' => 'oeu', 'Oeu058096.1' => 'oeu', 'Os02g0511100' => 'osa', 'Os02g0511400' => 'osa', 'Os03g0842900' => 'osa', 'Os04g0390700' => 'osa', 'Os04g0390800' => 'osa', 'Os11g0499600' => 'osa', 'Os12g0464400' => 'osa', 'Peaxi162Scf00007g00717' => 'pax', 'Peaxi162Scf00078g00032' => 'pax', 'Peaxi162Scf00128g01525' => 'pax', 'Peaxi162Scf00516g00324' => 'pax', 'Peaxi162Scf00961g00312' => 'pax', 'Peaxi162Scf01064g00261' => 'pax', 'PGR031G1561' => 'pgr', 'PGR042G3573' => 'pgr', 'PGR083G2491' => 'pgr', 'PGSC0003DMG400026485' => 'stu', 'PGSC0003DMG400028960' => 'stu', 'PGSC0003DMG400042259' => 'stu', 'PGSC0003DMG401010803' => 'stu', 'PGSC0003DMG402010803' => 'stu', 'PGSC0003DMG402026939' => 'stu', 'Phvul.002G285000' => 'pvu', 'Phvul.002G285100' => 'pvu', 'Phvul.002G285200' => 'pvu', 'Potri.012G101900' => 'ptr', 'Potri.012G102000' => 'ptr', 'Potri.013G100200' => 'ptr', 'Potri.015G099900' => 'ptr', 'Potri.015G100000' => 'ptr', 'Potri.015G100102' => 'ptr', 'Potri.016G048800' => 'ptr', 'Potri.016G048900' => 'ptr', 'Potri.019G073200' => 'ptr', 'Pp3c20_12760' => 'ppa', 'Pp3c5_25020' => 'ppa', 'PRCOL_00005689' => 'pco', 'Prupe.1G546200' => 'ppe', 'Prupe.5G147800' => 'ppe', 'Prupe.5G148000' => 'ppe', 'Prupe.5G148100' => 'ppe', 'Psat7g037080' => 'psa', 'PSO017G1192' => 'pso', 'PSO017G1793' => 'pso', 'PSO017G5184' => 'pso', 'PSO017G5448' => 'pso', 'PSO017G7381' => 'pso', 'PSO063G3434' => 'pso', 'PSO170G2491' => 'pso', 'PSO210G4349' => 'pso', 'PSO478G0411' => 'pso', 'PSO478G0728' => 'pso', 'PSO478G0774' => 'pso', 'PSO478G3959' => 'pso', 'PSO782G3695' => 'pso', 'QL05p065630' => 'qlo', 'QL05p065679' => 'qlo', 'QL05p065691' => 'qlo', 'QL05p066027' => 'qlo', 'QL05p066045' => 'qlo', 'QL08p004889' => 'qlo', 'QL08p004897' => 'qlo', 'QL09p002867' => 'qlo', 'QL09p003757' => 'qlo', 'QL09p003769' => 'qlo', 'QL10p002185' => 'qlo', 'QL10p002201' => 'qlo', 'QL10p002217' => 'qlo', 'QL10p002281' => 'qlo', 'QL10p002304' => 'qlo', 'QL10p002314' => 'qlo', 'QL10p002321' => 'qlo', 'QL10p002341' => 'qlo', 'RcHm_v2.0_Chr7g0189551' => 'rch', 'RcHm_v2.0_Chr7g0189561' => 'rch', 'RcHm_v2.0_Chr7g0189581' => 'rch', 'RcHm_v2.0_Chr7g0189691' => 'rch', 'RcHm_v2.0_Chr7g0231461' => 'rch', 'Rhsim01G0064400' => 'rsi', 'Rhsim08G0192100' => 'rsi', 'Rhsim08G0192200' => 'rsi', 'Rhsim08G0192300' => 'rsi', 'Rhsim08G0192400' => 'rsi', 'Rhsim12G0004700' => 'rsi', 'RhsimUnG0162400' => 'rsi', 'Sabra12G0074700' => 'sbr', 'Sabra15G0120600' => 'sbr', 'Sabra15G0120700' => 'sbr', 'Sabra16G0052500' => 'sbr', 'Sabra16G0052600' => 'sbr', 'SalBow5G0306' => 'sbo', 'SalBow5G5213' => 'sbo', 'SalBow5G5353' => 'sbo', 'SalBow6G6004' => 'sbo', 'SalBow6G6815' => 'sbo', 'SalBow7G4282' => 'sbo', 'Sc02g0008160' => 'sci', 'Sc04g0000530' => 'sci', 'Sc10g0010580' => 'sci', 'Sed0003161' => 'sed', 'Sed0005087' => 'sed', 'Sed0021550' => 'sed', 'Sed0026160' => 'sed', 'SEGI_03915' => 'sgi', 'SEGI_09259' => 'sgi', 'SEGI_10005' => 'sgi', 'SEGI_19894' => 'sgi', 'SEGI_27870' => 'sgi', 'SEGI_35942' => 'sgi', 'SEGI_40948' => 'sgi', 'SGA_v2.0_scaffold118G32588' => 'sas', 'SGA_v2.0_scaffold207G41871' => 'sas', 'SGA_v2.0_scaffold24G10631' => 'sas', 'SGA_v2.0_scaffold40G15565' => 'sas', 'SGA_v2.0_scaffold414G51199' => 'sas', 'SHI16736' => 'shi', 'SMO144G0108' => 'smo', 'SMO201G0015' => 'smo', 'SMO229G0038' => 'smo', 'SMO343G0073' => 'smo', 'Solyc03g097440.3' => 'sly', 'Solyc05g015940.2' => 'sly', 'Solyc05g150119.1' => 'sly', 'Solyc06g064650.4' => 'sly', 'Solyc06g072670.3' => 'sly', 'Solyc07g052270.3' => 'sly', 'Sopen03g028200' => 'spe', 'Sopen05g011990' => 'spe', 'Sopen06g023130' => 'spe', 'Sopen06g029040' => 'spe', 'Sopen07g025900' => 'spe', 'Sp6g07380' => 'spa', 'Sp6g12770' => 'spa', 'Sp6g12780' => 'spa', 'Sp6g12870' => 'spa', 'TAR622G0677' => 'tar', 'TAR622G0855' => 'tar', 'TAR628G1441' => 'tar', 'TAR629G0909' => 'tar', 'TAR629G1934' => 'tar', 'THA.LOC104803153' => 'tha', 'THA.LOC104806756' => 'tha', 'THA.LOC104811572' => 'tha', 'THA.LOC104811573' => 'tha', 'THA.LOC104811575' => 'tha', 'THA.LOC104811576' => 'tha', 'THA.LOC104811579' => 'tha', 'THA.LOC104825026' => 'tha', 'Thecc.03G133100' => 'tca', 'Thecc.03G133200' => 'tca', 'Thecc.03G133300' => 'tca', 'Thecc.03G133400' => 'tca', 'Thecc.03G133500' => 'tca', 'Thecc.03G133600' => 'tca', 'Thecc.08G174000' => 'tca', 'Thhalv10010570m.g' => 'esa', 'Thhalv10011076m.g' => 'esa', 'Thhalv10014225m.g' => 'esa', 'Thhalv10015475m.g' => 'esa', 'Thhalv10015936m.g' => 'esa', 'Thhalv10029315m.g' => 'esa', 'TPR.G12751' => 'tpr', 'TPR.G12865' => 'tpr', 'TPR.G12878' => 'tpr', 'TPR.G12882' => 'tpr', 'TPR.G28661' => 'tpr', 'TPR.G37961' => 'tpr', 'TWI12G1084' => 'twi', 'TWI23G0796' => 'twi', 'TWI23G1260' => 'twi', 'TWI39G0134' => 'twi', 'TWI39G0640' => 'twi', 'TWI39G1229' => 'twi', 'TWI75G1039' => 'twi', 'unitig_22.g6249' => 'ugi', 'unitig_744.g24642' => 'ugi', 'unitig_8.g4890' => 'ugi', 'vmacro19131' => 'vma', 'vmacro19132' => 'vma', 'vmacro19133' => 'vma', 'vmacro19134' => 'vma', 'vmacro22749' => 'vma', 'VMungo0251G1555' => 'vmu', 'VMungo0251G2918' => 'vmu', 'VMungo0464G1807' => 'vmu', 'VMungo1383G3109' => 'vmu', 'Zm00001eb049090' => 'zma', 'Zm00001eb085280' => 'zma', 'Zm00001eb085290' => 'zma', 'Zm00001eb112950' => 'zma', 'Zm00001eb169370' => 'zma', 'Zm00001eb241850' => 'zma', 'Zm00001eb328980' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001095', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001095' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001095', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '559', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001095' ) ), 'genes' => array( 'A01p25900' => 'bna', 'A02p12630' => 'bna', 'A02p12660' => 'bna', 'A02p26790' => 'bna', 'A03p27840' => 'bna', 'A03p28820' => 'bna', 'A03p49400' => 'bna', 'A06p27170' => 'bna', 'A10p08250' => 'bna', 'Aa31LG3G7050' => 'aar', 'Aa31LG4G16130' => 'aar', 'Aa31LG4G16140' => 'aar', 'Aa31LG4G16150' => 'aar', 'Aa31LG4G16160' => 'aar', 'Aa31LG4G16170' => 'aar', 'Aa31LG9G11970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3287' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3982' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1644' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.710' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.711' => 'aag', 'Actinidia03508' => 'ach', 'Actinidia18335' => 'ach', 'Actinidia18336' => 'ach', 'Actinidia25557' => 'ach', 'Actinidia25558' => 'ach', 'Actinidia29394' => 'ach', 'Actinidia30626' => 'ach', 'Ah.11g045550' => 'amhyb', 'AL5G26520' => 'aly', 'AL5G26530' => 'aly', 'AL6G43740' => 'aly', 'AL8G24850' => 'aly', 'AL8G24860' => 'aly', 'Aqoxy3G01624' => 'aox', 'Aqoxy5G03266' => 'aox', 'Aqoxy5G03267' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6DPN98' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6DVG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L31C0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PEL1CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QGI3MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPV64N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIY3FB' => 'arhy', 'AT3G47350' => 'ath', 'AT3G47360' => 'ath', 'AT4G10020' => 'ath', 'AT5G50590' => 'ath', 'AT5G50600' => 'ath', 'AT5G50690' => 'ath', 'AT5G50700' => 'ath', 'AT5G50770' => 'ath', 'ATR0582G110' => 'atr', 'ATR0582G184' => 'atr', 'ATR0582G359' => 'atr', 'ATR1089G151' => 'atr', 'Atru.chr13.2428' => 'acertr', 'Atru.chr6.1847' => 'acertr', 'Atru.chr6.1848' => 'acertr', 'AUR62022399' => 'cqu', 'AUR62029572' => 'cqu', 'AUR62029574' => 'cqu', 'AUR62029575' => 'cqu', 'AUR62038844' => 'cqu', 'AUR62038845' => 'cqu', 'AUR62043538' => 'cqu', 'AUR62043949' => 'cqu', 'AUR62043950' => 'cqu', 'AUR62044440' => 'cqu', 'BcaB01g02769' => 'bca', 'BcaB01g02891' => 'bca', 'BcaB05g24037' => 'bca', 'BcaB05g24039' => 'bca', 'BcaB08g35434' => 'bca', 'BcaB08g35435' => 'bca', 'BcaB08g35436' => 'bca', 'BcaC01g01835' => 'bca', 'BcaC01g04695' => 'bca', 'BcaC01g04805' => 'bca', 'BcaC03g14638' => 'bca', 'BcaC03g14640' => 'bca', 'BcaC04g20756' => 'bca', 'BcaC06g33441' => 'bca', 'BolC1t03222H' => 'bol', 'BolC2t08213H' => 'bol', 'BolC2t08215H' => 'bol', 'BolC3t15679H' => 'bol', 'BolC3t15796H' => 'bol', 'BolC3t19431H' => 'bol', 'BolC3t19434H' => 'bol', 'BolC7t45273H' => 'bol', 'BolC9t56830H' => 'bol', 'BraA01t02511Z' => 'bra', 'BraA02t06321Z' => 'bra', 'BraA02t06323Z' => 'bra', 'BraA02t07683Z' => 'bra', 'BraA03t11995Z' => 'bra', 'BraA03t12080Z' => 'bra', 'BraA03t14041Z' => 'bra', 'BraA06t25659Z' => 'bra', 'BraSC35t45976Z' => 'bra', 'C02p20700' => 'bna', 'C02p20720' => 'bna', 'C02p42580' => 'bna', 'C03p33600' => 'bna', 'C03p34840' => 'bna', 'C07p47460' => 'bna', 'C09p39540' => 'bna', 'CAN.G1199.6' => 'can', 'CAN.G208.3' => 'can', 'CAN.G732.19' => 'can', 'CAN.G732.20' => 'can', 'CANSAT25G1304' => 'cansat', 'CANSAT25G1839' => 'cansat', 'CANSAT25G2406' => 'cansat', 'CANSAT25G3170' => 'cansat', 'CANSAT54G0342' => 'cansat', 'CANSAT80G0934' => 'cansat', 'CARHR155940' => 'chi', 'CARHR155950' => 'chi', 'CARHR155960' => 'chi', 'CARHR155970' => 'chi', 'CARHR155980' => 'chi', 'CARHR257560' => 'chi', 'CARHR257660' => 'chi', 'CARHR257670' => 'chi', 'CARHR257680' => 'chi', 'CARHR261020' => 'chi', 'Carub.0005s1342' => 'cru', 'Carub.0006s2857' => 'cru', 'Carub.0008s1069' => 'cru', 'Carub.0008s1070' => 'cru', 'Carub.0008s1076' => 'cru', 'Ca_17563_v3' => 'car', 'Ca_17565_v3' => 'car', 'Ca_24485_v3' => 'car', 'Ca_29728_v3' => 'car', 'CBR_g34613' => 'cbr', 'CBR_g3773' => 'cbr', 'CBR_g55384' => 'cbr', 'Cc00_g13450' => 'ccan', 'Cc00_g13460' => 'ccan', 'Cc04_g09900' => 'ccan', 'Cc10_g09130' => 'ccan', 'CDE05G0572' => 'cde', 'CDE05G1322' => 'cde', 'CDE06G1632' => 'cde', 'Cfa008105' => 'cfa', 'Cfa018766' => 'cfa', 'Cfa018767' => 'cfa', 'Cfa022796' => 'cfa', 'Cfa026947' => 'cfa', 'Ciclev10020750m.g' => 'ccl', 'Ciclev10031927m.g' => 'ccl', 'Ciclev10031969m.g' => 'ccl', 'CiPaw.04G010600' => 'cil', 'CiPaw.11G004800' => 'cil', 'CiPaw.12G004500' => 'cil', 'ClCG03G003920' => 'cla', 'ClCG03G003930' => 'cla', 'ClCG08G000700' => 'cla', 'COL.COLO4_16628' => 'col', 'COL.COLO4_16629' => 'col', 'COL.COLO4_16630' => 'col', 'COL.COLO4_16631' => 'col', 'COL.COLO4_16632' => 'col', 'COL.COLO4_24591' => 'col', 'COL.COLO4_36208' => 'col', 'COL.COLO4_36212' => 'col', 'COL.COLO4_38483' => 'col', 'COL.COLO4_38484' => 'col', 'Cpa.g.sc21.62' => 'cpa', 'Cpa.g.sc4.163' => 'cpa', 'Cpa.g.sc4.164' => 'cpa', 'Cre14.g610501' => 'cre', 'CsaV3_1G009800' => 'csa', 'CsaV3_1G009810' => 'csa', 'CsaV3_1G009820' => 'csa', 'CsaV3_5G040170' => 'csa', 'CSS0007600' => 'camsi', 'CSS0048343' => 'camsi', 'DCAR_003515' => 'dca', 'DCAR_007504' => 'dca', 'DCAR_007505' => 'dca', 'DCAR_007506' => 'dca', 'Dinv09404' => 'din', 'Dinv11697' => 'din', 'Dinv11698' => 'din', 'Dinv11699' => 'din', 'Dinv11700' => 'din', 'Dinv17593' => 'din', 'Duzib068G0050' => 'dzi', 'Duzib084G0960' => 'dzi', 'Duzib205G0420' => 'dzi', 'Duzib205G1402' => 'dzi', 'ECA232G1822' => 'eca', 'ECA232G3537' => 'eca', 'ECA246G0726' => 'eca', 'ECA246G2809' => 'eca', 'ECA246G3720' => 'eca', 'ECA247G2510' => 'eca', 'EL10Ac1g01639' => 'bvu', 'EL10Ac5g11382' => 'bvu', 'Eucgr.B00089' => 'egr', 'Eucgr.B00090' => 'egr', 'Eucgr.F02966' => 'egr', 'Eucgr.K02702' => 'egr', 'Eucgr.K02704' => 'egr', 'FAN04G0017' => 'fan', 'FAN08G1138' => 'fan', 'FAN08G2167' => 'fan', 'FAN08G2188' => 'fan', 'FAN08G3146' => 'fan', 'FAN13G0111' => 'fan', 'FAN18G0295' => 'fan', 'FAN18G1775' => 'fan', 'FvH4_5g08690' => 'fve', 'FvH4_5g08700' => 'fve', 'FvH4_5g08710' => 'fve', 'FvH4_5g08730' => 'fve', 'FvH4_5g33170' => 'fve', 'Glyma.01G227900' => 'gma', 'Glyma.05G203300' => 'gma', 'Glyma.05G203402' => 'gma', 'Glyma.08G010800' => 'gma', 'Glyma.11G015100' => 'gma', 'Gohir.A03G054400' => 'ghi', 'Gohir.A05G238200' => 'ghi', 'Gohir.A07G049400' => 'ghi', 'Gohir.A07G049500' => 'ghi', 'Gohir.A09G247351' => 'ghi', 'Gohir.D03G112500' => 'ghi', 'Gohir.D05G240200' => 'ghi', 'Gohir.D07G053700' => 'ghi', 'Gohir.D07G053800' => 'ghi', 'Gorai.001G056800' => 'gra', 'Gorai.001G056900' => 'gra', 'Gorai.003G118700' => 'gra', 'Gorai.006G272300' => 'gra', 'Gorai.009G249100' => 'gra', 'GSVIVG01000914001' => 'vvi', 'GSVIVG01000915001' => 'vvi', 'GSVIVG01008578001' => 'vvi', 'GSVIVG01008579001' => 'vvi', 'GSVIVG01008580001' => 'vvi', 'GSVIVG01008581001' => 'vvi', 'GSVIVG01024343001' => 'vvi', 'GSVIVG01036430001' => 'vvi', 'HanXRQChr02g0034091' => 'han', 'HanXRQChr02g0034101' => 'han', 'HanXRQChr02g0037041' => 'han', 'HanXRQChr04g0102651' => 'han', 'HanXRQChr05g0128811' => 'han', 'HanXRQChr05g0128821' => 'han', 'HanXRQChr05g0128831' => 'han', 'HanXRQChr05g0128871' => 'han', 'HanXRQChr05g0153801' => 'han', 'HanXRQChr05g0153811' => 'han', 'HanXRQChr06g0174791' => 'han', 'HanXRQChr06g0174801' => 'han', 'HanXRQChr09g0273441' => 'han', 'HanXRQChr09g0273451' => 'han', 'HanXRQChr16g0498301' => 'han', 'HanXRQChr17g0568971' => 'han', 'Haze_07173' => 'cav', 'Haze_07174' => 'cav', 'Haze_13919' => 'cav', 'Hma1.2p1_0004F.1_g003850' => 'hma', 'Hma1.2p1_0004F.1_g003860' => 'hma', 'HPP92_012683' => 'vpl', 'HPP92_012704' => 'vpl', 'HPP92_021693' => 'vpl', 'HPP92_021695' => 'vpl', 'HPP92_021708' => 'vpl', 'HPP92_021710' => 'vpl', 'Hund10128' => 'sun', 'Hund10133' => 'sun', 'Hund10137' => 'sun', 'Lalb_Chr07g0183571' => 'lal', 'Lalb_Chr13g0297181' => 'lal', 'Lalb_Chr16g0376811' => 'lal', 'Lj1A670G40' => 'lonja', 'Lj1A672T41' => 'lonja', 'Lj1A673T41' => 'lonja', 'Lj1A673T42' => 'lonja', 'Lj1A674T84' => 'lonja', 'Lj3C1073T4' => 'lonja', 'Lj4A653G10' => 'lonja', 'Lj4g0008195' => 'lja', 'Lj5C93G10' => 'lonja', 'Lj5C93T8' => 'lonja', 'Lj6A831G20' => 'lonja', 'Lj6C831T0' => 'lonja', 'Lj9A481T51' => 'lonja', 'Lj9A700T93' => 'lonja', 'Lj9C481T7' => 'lonja', 'Lj9C481T9' => 'lonja', 'Lj9P481G32' => 'lonja', 'LjContig00222g0013405' => 'lja', 'Lsat_1_v5_gn_0_29221' => 'lsa', 'Lsat_1_v5_gn_1_25201' => 'lsa', 'Lsat_1_v5_gn_1_32801' => 'lsa', 'Lsat_1_v5_gn_1_32821' => 'lsa', 'Lsat_1_v5_gn_1_32841' => 'lsa', 'Lsat_1_v5_gn_3_31161' => 'lsa', 'Lsat_1_v5_gn_4_82400' => 'lsa', 'Lsat_1_v5_gn_4_82421' => 'lsa', 'Lsat_1_v5_gn_4_82500' => 'lsa', 'Lsat_1_v5_gn_5_11960' => 'lsa', 'Manes.06G121600' => 'mes', 'Manes.06G121700' => 'mes', 'Manes.06G121800' => 'mes', 'Manes.06G121900' => 'mes', 'Manes.18G119600' => 'mes', 'MBI06_g35696_MAGBIO' => 'mbi', 'MBI07_g01983_MAGBIO' => 'mbi', 'MBI07_g01984_MAGBIO' => 'mbi', 'MBI07_g01987_MAGBIO' => 'mbi', 'MBI07_g01993_MAGBIO' => 'mbi', 'MBI07_g01995_MAGBIO' => 'mbi', 'MD08G1214700' => 'mdo', 'MD14G1152800' => 'mdo', 'MD14G1152900' => 'mdo', 'MD14G1153000' => 'mdo', 'MD15G1397600' => 'mdo', 'Medtr5g008850' => 'mtr', 'Medtr8g096580' => 'mtr', 'Medtr8g096610' => 'mtr', 'Medtr8g096620' => 'mtr', 'MELO3C002374.2' => 'cme', 'MELO3C002375.2' => 'cme', 'MELO3C002376.2' => 'cme', 'MELO3C002377.2' => 'cme', 'MELO3C022194.2' => 'cme', 'Migut.C01358' => 'egut', 'Migut.I00555' => 'egut', 'Migut.I00556' => 'egut', 'Nitab4.5_0000021g1040' => 'nta', 'Nitab4.5_0000645g0020' => 'nta', 'Nitab4.5_0000709g0020' => 'nta', 'Nitab4.5_0001257g0050' => 'nta', 'Nitab4.5_0002137g0030' => 'nta', 'Nitab4.5_0002530g0030' => 'nta', 'Nitab4.5_0002654g0160' => 'nta', 'Nitab4.5_0003346g0070' => 'nta', 'Nitab4.5_0003510g0030' => 'nta', 'Nitab4.5_0004761g0040' => 'nta', 'Nitab4.5_0006301g0010' => 'nta', 'Nn1g09839' => 'nnu', 'Nn3g16389' => 'nnu', 'Nn3g16390' => 'nnu', 'Nn3g16391' => 'nnu', 'Nn3g18469' => 'nnu', 'Nn3g18632' => 'nnu', 'Nn4g22248' => 'nnu', 'Nn4g22249' => 'nnu', 'Nn4g24549' => 'nnu', 'Nn4g24798' => 'nnu', 'Nn4g24799' => 'nnu', 'Nn4g24890' => 'nnu', 'Nn7g36853' => 'nnu', 'Oeu006615.1' => 'oeu', 'Oeu022159.1' => 'oeu', 'Oeu025418.1' => 'oeu', 'Oeu028102.1' => 'oeu', 'Oeu058096.1' => 'oeu', 'Os02g0511100' => 'osa', 'Os02g0511400' => 'osa', 'Os03g0842900' => 'osa', 'Os04g0390700' => 'osa', 'Os04g0390800' => 'osa', 'Os11g0499600' => 'osa', 'Os12g0464400' => 'osa', 'Peaxi162Scf00007g00717' => 'pax', 'Peaxi162Scf00078g00032' => 'pax', 'Peaxi162Scf00128g01525' => 'pax', 'Peaxi162Scf00516g00324' => 'pax', 'Peaxi162Scf00961g00312' => 'pax', 'Peaxi162Scf01064g00261' => 'pax', 'PGR031G1561' => 'pgr', 'PGR042G3573' => 'pgr', 'PGR083G2491' => 'pgr', 'PGSC0003DMG400026485' => 'stu', 'PGSC0003DMG400028960' => 'stu', 'PGSC0003DMG400042259' => 'stu', 'PGSC0003DMG401010803' => 'stu', 'PGSC0003DMG402010803' => 'stu', 'PGSC0003DMG402026939' => 'stu', 'Phvul.002G285000' => 'pvu', 'Phvul.002G285100' => 'pvu', 'Phvul.002G285200' => 'pvu', 'Potri.012G101900' => 'ptr', 'Potri.012G102000' => 'ptr', 'Potri.013G100200' => 'ptr', 'Potri.015G099900' => 'ptr', 'Potri.015G100000' => 'ptr', 'Potri.015G100102' => 'ptr', 'Potri.016G048800' => 'ptr', 'Potri.016G048900' => 'ptr', 'Potri.019G073200' => 'ptr', 'Pp3c20_12760' => 'ppa', 'Pp3c5_25020' => 'ppa', 'PRCOL_00005689' => 'pco', 'Prupe.1G546200' => 'ppe', 'Prupe.5G147800' => 'ppe', 'Prupe.5G148000' => 'ppe', 'Prupe.5G148100' => 'ppe', 'Psat7g037080' => 'psa', 'PSO017G1192' => 'pso', 'PSO017G1793' => 'pso', 'PSO017G5184' => 'pso', 'PSO017G5448' => 'pso', 'PSO017G7381' => 'pso', 'PSO063G3434' => 'pso', 'PSO170G2491' => 'pso', 'PSO210G4349' => 'pso', 'PSO478G0411' => 'pso', 'PSO478G0728' => 'pso', 'PSO478G0774' => 'pso', 'PSO478G3959' => 'pso', 'PSO782G3695' => 'pso', 'QL05p065630' => 'qlo', 'QL05p065679' => 'qlo', 'QL05p065691' => 'qlo', 'QL05p066027' => 'qlo', 'QL05p066045' => 'qlo', 'QL08p004889' => 'qlo', 'QL08p004897' => 'qlo', 'QL09p002867' => 'qlo', 'QL09p003757' => 'qlo', 'QL09p003769' => 'qlo', 'QL10p002185' => 'qlo', 'QL10p002201' => 'qlo', 'QL10p002217' => 'qlo', 'QL10p002281' => 'qlo', 'QL10p002304' => 'qlo', 'QL10p002314' => 'qlo', 'QL10p002321' => 'qlo', 'QL10p002341' => 'qlo', 'RcHm_v2.0_Chr7g0189551' => 'rch', 'RcHm_v2.0_Chr7g0189561' => 'rch', 'RcHm_v2.0_Chr7g0189581' => 'rch', 'RcHm_v2.0_Chr7g0189691' => 'rch', 'RcHm_v2.0_Chr7g0231461' => 'rch', 'Rhsim01G0064400' => 'rsi', 'Rhsim08G0192100' => 'rsi', 'Rhsim08G0192200' => 'rsi', 'Rhsim08G0192300' => 'rsi', 'Rhsim08G0192400' => 'rsi', 'Rhsim12G0004700' => 'rsi', 'RhsimUnG0162400' => 'rsi', 'Sabra12G0074700' => 'sbr', 'Sabra15G0120600' => 'sbr', 'Sabra15G0120700' => 'sbr', 'Sabra16G0052500' => 'sbr', 'Sabra16G0052600' => 'sbr', 'SalBow5G0306' => 'sbo', 'SalBow5G5213' => 'sbo', 'SalBow5G5353' => 'sbo', 'SalBow6G6004' => 'sbo', 'SalBow6G6815' => 'sbo', 'SalBow7G4282' => 'sbo', 'Sc02g0008160' => 'sci', 'Sc04g0000530' => 'sci', 'Sc10g0010580' => 'sci', 'Sed0003161' => 'sed', 'Sed0005087' => 'sed', 'Sed0021550' => 'sed', 'Sed0026160' => 'sed', 'SEGI_03915' => 'sgi', 'SEGI_09259' => 'sgi', 'SEGI_10005' => 'sgi', 'SEGI_19894' => 'sgi', 'SEGI_27870' => 'sgi', 'SEGI_35942' => 'sgi', 'SEGI_40948' => 'sgi', 'SGA_v2.0_scaffold118G32588' => 'sas', 'SGA_v2.0_scaffold207G41871' => 'sas', 'SGA_v2.0_scaffold24G10631' => 'sas', 'SGA_v2.0_scaffold40G15565' => 'sas', 'SGA_v2.0_scaffold414G51199' => 'sas', 'SHI16736' => 'shi', 'SMO144G0108' => 'smo', 'SMO201G0015' => 'smo', 'SMO229G0038' => 'smo', 'SMO343G0073' => 'smo', 'Solyc03g097440.3' => 'sly', 'Solyc05g015940.2' => 'sly', 'Solyc05g150119.1' => 'sly', 'Solyc06g064650.4' => 'sly', 'Solyc06g072670.3' => 'sly', 'Solyc07g052270.3' => 'sly', 'Sopen03g028200' => 'spe', 'Sopen05g011990' => 'spe', 'Sopen06g023130' => 'spe', 'Sopen06g029040' => 'spe', 'Sopen07g025900' => 'spe', 'Sp6g07380' => 'spa', 'Sp6g12770' => 'spa', 'Sp6g12780' => 'spa', 'Sp6g12870' => 'spa', 'TAR622G0677' => 'tar', 'TAR622G0855' => 'tar', 'TAR628G1441' => 'tar', 'TAR629G0909' => 'tar', 'TAR629G1934' => 'tar', 'THA.LOC104803153' => 'tha', 'THA.LOC104806756' => 'tha', 'THA.LOC104811572' => 'tha', 'THA.LOC104811573' => 'tha', 'THA.LOC104811575' => 'tha', 'THA.LOC104811576' => 'tha', 'THA.LOC104811579' => 'tha', 'THA.LOC104825026' => 'tha', 'Thecc.03G133100' => 'tca', 'Thecc.03G133200' => 'tca', 'Thecc.03G133300' => 'tca', 'Thecc.03G133400' => 'tca', 'Thecc.03G133500' => 'tca', 'Thecc.03G133600' => 'tca', 'Thecc.08G174000' => 'tca', 'Thhalv10010570m.g' => 'esa', 'Thhalv10011076m.g' => 'esa', 'Thhalv10014225m.g' => 'esa', 'Thhalv10015475m.g' => 'esa', 'Thhalv10015936m.g' => 'esa', 'Thhalv10029315m.g' => 'esa', 'TPR.G12751' => 'tpr', 'TPR.G12865' => 'tpr', 'TPR.G12878' => 'tpr', 'TPR.G12882' => 'tpr', 'TPR.G28661' => 'tpr', 'TPR.G37961' => 'tpr', 'TWI12G1084' => 'twi', 'TWI23G0796' => 'twi', 'TWI23G1260' => 'twi', 'TWI39G0134' => 'twi', 'TWI39G0640' => 'twi', 'TWI39G1229' => 'twi', 'TWI75G1039' => 'twi', 'unitig_22.g6249' => 'ugi', 'unitig_744.g24642' => 'ugi', 'unitig_8.g4890' => 'ugi', 'vmacro19131' => 'vma', 'vmacro19132' => 'vma', 'vmacro19133' => 'vma', 'vmacro19134' => 'vma', 'vmacro22749' => 'vma', 'VMungo0251G1555' => 'vmu', 'VMungo0251G2918' => 'vmu', 'VMungo0464G1807' => 'vmu', 'VMungo1383G3109' => 'vmu', 'Zm00001eb049090' => 'zma', 'Zm00001eb085280' => 'zma', 'Zm00001eb085290' => 'zma', 'Zm00001eb112950' => 'zma', 'Zm00001eb169370' => 'zma', 'Zm00001eb241850' => 'zma', 'Zm00001eb328980' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001095' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001095' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001095' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001095' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151