Gene: vmacro06713

General Information

Structural Information

  • Species Vaccinium macrocarpon
  • Gene Identifier vmacro06713
  • Transcript Identifier vmacro06713-RA
  • Gene Type Coding gene
  • Location chr2_Vaccinium_macrocarpon_Stevens_v1 : 9921593-9924127 : positive

Gene Family Information

  • ID HOM05D000042
  • #Genes/#Species 4894/100
  • Phylogenetic origin
  • ID ORTHO05D426493
  • #Genes/#Species 1 / 1(orphan gene)
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id vmacro06713_Vaccinium_macrocarpon_Stevens_v1

Descriptions

  • Description Similar to TDR5: Agamous-like MADS-box protein AGL9 homolog (Solanum lycopersicum OX=4081)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
ISO
PLAZA Homology (enrichment)regulation of transcription, DNA-templated HOM05D000042
GO:0045944
ISO
PLAZA Homology (enrichment)positive regulation of transcription by RNA polymerase II HOM05D000042

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003700
ISO
PLAZA Homology (enrichment)DNA-binding transcription factor activity HOM05D000042
GO:0000977
ISO
PLAZA Homology (enrichment)RNA polymerase II transcription regulatory region sequence-specific DNA binding HOM05D000042

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Homology (enrichment)nucleus HOM05D000042

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036879 Transcription factor, MADS-box superfamily
IPR002100 Transcription factor, MADS-box
Mapman id Description
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)