Gene: vmacro06290
General Information
Structural Information
- Species Vaccinium macrocarpon
- Gene Identifier vmacro06290
- Transcript Identifier vmacro06290-RA
- Gene Type Coding gene
- Location chr2_Vaccinium_macrocarpon_Stevens_v1 : 4440256-4446772 : positive
Gene Family Information
- ID HOM05D000140
- #Genes/#Species 2610/97
- Phylogenetic origin
- ID ORTHO05D000087
- #Genes/#Species 2327/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id vmacro06290_Vaccinium_macrocarpon_Stevens_v1
Descriptions
- Description Similar to Beta-galactosidase (Solanum lycopersicum OX=4081)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005975 | IEA | InterPro | carbohydrate metabolic process | |
| GO:0080167 | ISO | PLAZA Integrative Orthology | response to karrikin | AT5G63810 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004553 | IEA | InterPro | hydrolase activity, hydrolyzing O-glycosyl compounds | |
| GO:0030246 | IEA | InterPro | carbohydrate binding | |
| GO:0004565 | ISO | PLAZA Integrative Orthology | beta-galactosidase activity | AT5G63810 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT4G26140 |
| GO:0048046 | ISO | PLAZA Integrative Orthology | apoplast | AT3G52840 |
| GO:0009505 | ISO | PLAZA Integrative Orthology | plant-type cell wall | AT3G52840 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001944 | Glycoside hydrolase, family 35 |
| IPR041392 | Beta-galactosidase, beta-sandwich domain |
| IPR000922 | D-galactoside/L-rhamnose binding SUEL lectin domain |
| IPR031330 | Glycoside hydrolase 35, catalytic domain |
| IPR008979 | Galactose-binding-like domain superfamily |
| IPR017853 | Glycoside hydrolase superfamily |
| IPR043159 | D-galactoside/L-rhamnose binding SUEL lectin domain superfamily |
| Mapman id | Description |
|---|---|
| 21.3.2.2.3 | Cell wall organisation.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase (BGAL) |