Gene: Zm00001eb205290

General Information

Structural Information

  • Species Zea mays
  • Gene Identifier Zm00001eb205290
  • Transcript Identifier Zm00001eb205290_T001
  • Gene Type Coding gene
  • Location 4 : 239229131-239235251 : negative

Gene Family Information

  • ID HOM05D001141
  • #Genes/#Species 542/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Zm00001eb205290_T001
  • pid Zm00001eb205290_P001
  • uniprot Q94F82
  • uniprot A0A3L6F3A8
  • uniprot A0A1D6QQG8
  • uniprot K7UQW7
  • uniprot P56521
  • uniprot A0A1D6QQH2
  • entrez 541931
  • refseq XM_008679553.1
  • refseq NM_001111594.1
  • refseq NP_001105064.1
  • refseq XP_008677775.1
  • V4_identifier Zm00001d053595

Descriptions

  • Description Zm00001e024957
  • Description Histone deacetylase HDA101
  • Description RPD3 histone deacetylase homolog
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016575
IEA
GOA Databasehistone deacetylation
GO:0016575
IEA
InterProhistone deacetylation
GO:2000026
ISO
PLAZA Integrative Orthologyregulation of multicellular organismal development AT4G38130
GO:1902459
ISO
PLAZA Integrative Orthologypositive regulation of stem cell population maintenance AT4G38130
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT4G38130
GO:0009861
ISO
PLAZA Integrative Orthologyjasmonic acid and ethylene-dependent systemic resistance AT4G38130
GO:0016573
ISO
PLAZA Integrative Orthologyhistone acetylation AT4G38130
GO:1901001
ISO
PLAZA Integrative Orthologynegative regulation of response to salt stress AT4G38130
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT4G38130
GO:0009294
ISO
PLAZA Integrative OrthologyDNA mediated transformation AT4G38130
GO:0070932
IEA
GOA Databasehistone H3 deacetylation
GO:0006325
IEA
GOA Databasechromatin organization

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G38130
GO:0004407
IEA
GOA Databasehistone deacetylase activity
GO:0004407
IEA
InterProhistone deacetylase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0008270
ISS
GOA Databasezinc ion binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0032041
IEA
GOA DatabaseNAD-dependent histone deacetylase activity (H3-K14 specific)

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000118
ISO
PLAZA Integrative Orthologyhistone deacetylase complex AT4G38130
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003084 Histone deacetylase
IPR000286 Histone deacetylase family
IPR037138 Histone deacetylase domain superfamily
IPR023801 Histone deacetylase domain
IPR023696 Ureohydrolase domain superfamily
Mapman id Description
12.3.2.1.1.2.1 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.SNL-HDA19 histone deacetylase complex.deacetylase component HDA19
12.3.2.1.1.3 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.histone deacetylase (HDA8)