Gene: Zm00001eb127780
General Information
Structural Information
- Species Zea mays
- Gene Identifier Zm00001eb127780
- Transcript Identifier Zm00001eb127780_T001
- Gene Type Coding gene
- Location 3 : 36502040-36503779 : negative
Gene Family Information
- ID HOM05D003752
- #Genes/#Species 183/98
- Phylogenetic origin
- ID ORTHO05D004537
- #Genes/#Species 177/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Zm00001eb127780_T001
- pid Zm00001eb127780_P001
- uniprot A0A3L6FGX6
- uniprot A0A1D6MPT4
- entrez 103649956
- refseq XP_008673873.1
- refseq XM_008675651.1
- V4_identifier Zm00001d040293
Descriptions
- Description Zm00001e017259
- Description H/ACA ribonucleoprotein complex subunit 4
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031120 | IBA | GOA Database | snRNA pseudouridine synthesis | |
| GO:0009451 | IEA | GOA Database | RNA modification | |
| GO:0009451 | IEA | InterPro | RNA modification | |
| GO:0001522 | IEA | GOA Database | pseudouridine synthesis | |
| GO:0001522 | IEA | InterPro | pseudouridine synthesis | |
| GO:0006396 | IEA | GOA Database | RNA processing | |
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0000495 | IBA | GOA Database | box H/ACA RNA 3'-end processing | |
| GO:0031118 | IBA | GOA Database | rRNA pseudouridine synthesis | |
| GO:1990481 | IBA | GOA Database | mRNA pseudouridine synthesis |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009982 | IBA IEA | GOA Database | pseudouridine synthase activity | |
| GO:0009982 | IEA | InterPro | pseudouridine synthase activity | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0016853 | IEA | GOA Database | isomerase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT3G57150 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT3G57150 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT3G57150 |
| GO:0031429 | IBA | GOA Database | box H/ACA snoRNP complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012960 | Dyskerin-like |
| IPR002478 | PUA domain |
| IPR015947 | PUA-like superfamily |
| IPR002501 | Pseudouridine synthase II, N-terminal |
| IPR004802 | tRNA pseudouridine synthase B family |
| IPR036974 | PUA domain superfamily |
| IPR004521 | Uncharacterised domain CHP00451 |
| IPR032819 | tRNA pseudouridylate synthase B, C-terminal |
| IPR020103 | Pseudouridine synthase, catalytic domain superfamily |
| Mapman id | Description |
|---|---|
| 17.1.1.2.2.1.1 | Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) rRNA pseudouridylation complex.pseudouridine synthase component Nap57/CBF5 |