Gene: Zm00001eb120880

General Information

Structural Information

  • Species Zea mays
  • Gene Identifier Zm00001eb120880
  • Transcript Identifier Zm00001eb120880_T002
  • Gene Type Coding gene
  • Location 3 : 5515861-5520885 : positive

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Zm00001eb120880_T002
  • pid Zm00001eb120880_P002
  • uniprot A0A1D6MHG9
  • uniprot A0A1D6MHG7
  • uniprot A0A1D6MHG8
  • uniprot A0A3L6FMI1
  • uniprot B4FWP6
  • uniprot A0A1D6PBZ3
  • entrez 100274281
  • refseq NM_001148645.1
  • refseq NP_001142117.1
  • V4_identifier Zm00001d039452

Descriptions

  • Description Zm00001e016546
  • Description DEAD-box ATP-dependent RNA helicase 20
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc03g112350.4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G63120
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003724
IBA
IEA
GOA DatabaseRNA helicase activity
GO:0004386
IEA
GOA Databasehelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G55150
GO:1990904
IBA
GOA Databaseribonucleoprotein complex
GO:0005634
IBA
GOA Databasenucleus
GO:0005737
IBA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011545 DEAD/DEAH box helicase domain
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
16.2.1.1.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).pre-mRNA splicing regulator (DDX5)