Gene: Zm00001eb081700
General Information
Structural Information
- Species Zea mays
- Gene Identifier Zm00001eb081700
- Transcript Identifier Zm00001eb081700_T001
- Gene Type Coding gene
- Location 2 : 47586679-47594178 : negative
Gene Family Information
- ID HOM05D003045
- #Genes/#Species 226/96
- Phylogenetic origin
- ID ORTHO05D003446
- #Genes/#Species 223/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Zm00001eb081700_T001
- pid Zm00001eb081700_P001
- uniprot A0A3L6FYH7
- uniprot B6SII9
- uniprot B8A1F5
- uniprot A0A1D6E9S1
- uniprot C4J069
- uniprot A0A1D6J7J2
- uniprot B6SHP8
- V4_identifier Zm00001d003546
Descriptions
- Description Zm00001e007996
- Description Sm-like protein LSM1B
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009414 | ISO | PLAZA Integrative Orthology | response to water deprivation | AT1G19120 |
| GO:0009631 | ISO | PLAZA Integrative Orthology | cold acclimation | AT1G19120 |
| GO:0042538 | ISO | PLAZA Integrative Orthology | hyperosmotic salinity response | AT1G19120 |
| GO:0000956 | IEA | GOA Database | nuclear-transcribed mRNA catabolic process | |
| GO:0000956 | IEA | InterPro | nuclear-transcribed mRNA catabolic process | |
| GO:0000290 | IBA | GOA Database | deadenylation-dependent decapping of nuclear-transcribed mRNA | |
| GO:0016070 | IBA | GOA Database | RNA metabolic process | |
| GO:0006397 | IEA | GOA Database | mRNA processing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000339 | IBA IEA | GOA Database | RNA cap binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G19120 |
| GO:0003723 | IBA IEA | GOA Database | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:1990726 | IBA | GOA Database | Lsm1-7-Pat1 complex | |
| GO:0000932 | IBA IEA | GOA Database | P-body | |
| GO:0005737 | IEA | GOA Database | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.2.3.1 | RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm1 |