Gene: Thecc.10G084800

General Information

Structural Information

  • Species Theobroma cacao
  • Gene Identifier Thecc.10G084800
  • Transcript Identifier Thecc.10G084800.1
  • Gene Type Coding gene
  • Location Chromosome_10 : 5098494-5099276 : positive

Gene Family Information

  • ID HOM05D003377
  • #Genes/#Species 203/89
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Thecc.10G084800.v2.1
  • pacid 42025030
  • ancestorIdentifier Thecc1EG043293.CGDv1.1
  • ancestorIdentifier Thecc1EG043293t1.CGDv1.1

Descriptions

  • Description RNA recognition motif and CCHC-type zinc finger domains containing protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0051302
ISO
PLAZA Integrative Orthologyregulation of cell division AT3G10400
GO:0032502
ISO
PLAZA Integrative Orthologydevelopmental process AT3G10400

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005689
IEA
InterProU12-type spliceosomal complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G10400

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR001878 Zinc finger, CCHC-type
IPR035979 RNA-binding domain superfamily
IPR044598 Zinc finger CCHC-type and RNA-binding motif-containing protein 1
IPR036875 Zinc finger, CCHC-type superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.2.4.2.3 RNA processing.pre-mRNA splicing.U12-type-intron-specific minor spliceosome.U11/U12 small nuclear ribonucleoprotein particle (snRNP).RNA chaperone (U11/U12-31K)