Gene: Thecc.02G366000
General Information
Structural Information
- Species Theobroma cacao
- Gene Identifier Thecc.02G366000
- Transcript Identifier Thecc.02G366000.2
- Gene Type Coding gene
- Location Chromosome_2 : 42932693-42940773 : positive
Gene Family Information
- ID HOM05D000515
- #Genes/#Species 1048/100
- Phylogenetic origin
- ID ORTHO05D003530
- #Genes/#Species 218/94
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Thecc.02G366000.v2.1
- pacid 42034346
- ancestorIdentifier Thecc1EG011915.CGDv1.1
Descriptions
- Description Helicase protein with RING/U-box domain
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc05g044480.3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0070615 | IEA | InterPro | nucleosome-dependent ATPase activity | |
| GO:0003724 | ISO | PLAZA Integrative Orthology | RNA helicase activity | Solyc05g044480.3 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001650 | Helicase, C-terminal |
| IPR001841 | Zinc finger, RING-type |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR038718 | SNF2-like, N-terminal domain superfamily |
| IPR000330 | SNF2, N-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR027370 | RING-type zinc-finger, LisH dimerisation motif |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Mapman id | Description |
|---|---|
| 12.4.8.3.2 | Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.Rad5/16-like group.chromatin remodeling factor (Rad5-like) |