Gene: Sopen12g033270
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen12g033270
- Transcript Identifier Sopen12g033270.1
- Gene Type Coding gene
- Location Spenn-ch12 : 81890403-81893281 : negative
Gene Family Information
- ID HOM05D000575
- #Genes/#Species 966/99
- Phylogenetic origin
- ID ORTHO05D004524
- #Genes/#Species 178/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen12g033270.1
Descriptions
- Description Encodes a serine hydroxymethyltransferase maximally expressed in root | serine hydroxymethyltransferase 4 (SHM4) | FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity | INVOLVED IN: response to cadmium ion, glycine metabolic process, L-serine metabolic process | LOCATED IN: cytosol, plasma membrane, membrane | EXPRESSED IN: 9 plant structures | EXPRESSED DURING: seedling growth, seed development stages | CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain , Serine hydroxymethyltransferase, pyridoxal phosphate binding site , Pyridoxal phosphate-dependent transferase, major region, subdomain 1 , Serine hydroxymethyltransferase | BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0019264 | IEA | InterPro | glycine biosynthetic process from serine | |
| GO:0035999 | IEA | InterPro | tetrahydrofolate interconversion | |
| GO:0010197 | ISO | PLAZA Integrative Orthology | polar nucleus fusion | AT4G13890 |
| GO:0009555 | ISO | PLAZA Integrative Orthology | pollen development | AT4G13890 |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT4G13930 |
| GO:0007623 | ISO | PLAZA Integrative Orthology | circadian rhythm | AT4G13930 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0004372 | IEA | InterPro | glycine hydroxymethyltransferase activity | |
| GO:0030170 | IEA | InterPro | pyridoxal phosphate binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G13930 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT4G13930 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT4G13930 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT4G13930 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR015422 | Pyridoxal phosphate-dependent transferase, small domain |
| IPR001085 | Serine hydroxymethyltransferase |
| IPR015421 | Pyridoxal phosphate-dependent transferase, major domain |
| IPR015424 | Pyridoxal phosphate-dependent transferase |
| IPR039429 | Serine hydroxymethyltransferase-like domain |