Gene: Sopen12g026670
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen12g026670
- Transcript Identifier Sopen12g026670.1
- Gene Type Coding gene
- Location Spenn-ch12 : 69705848-69706609 : negative
Gene Family Information
- ID HOM05D001703
- #Genes/#Species 380/99
- Phylogenetic origin
- ID ORTHO05D013921
- #Genes/#Species 15/11
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen12g026670.1
Descriptions
- Description Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants. | SNOWY COTYLEDON 1 (SCO1) | FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, ATP binding | INVOLVED IN: post-embryonic development, chloroplast organization, seed germination | LOCATED IN: mitochondrion, apoplast, chloroplast stroma, chloroplast, chloroplast envelope | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding , Translation elongation factor EFG/EF2, domain IV , Small GTP-binding protein , Translation elongation factor EFTu/EF1A, domain 2 , Translation elongation factor EFG/EF2, C-terminal , Translation elongation factor EFG/EF2 , Ribosomal protein S5 domain 2-type fold , Ribosomal protein S5 domain 2-type fold, subgroup , Elongation factor G/III/V , Translation elongation/initiation factor/Ribosomal, beta-barrel | BEST Arabidopsis thaliana protein match is: Translation elongation factor EFG/EF2 protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006414 | ISO | PLAZA Homology (enrichment) | translational elongation | HOM05D001703 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005525 | IEA | InterPro | GTP binding | |
| GO:0003746 | ISO | PLAZA Homology (enrichment) | translation elongation factor activity | HOM05D001703 |
| GO:0003924 | ISO | PLAZA Homology (enrichment) | GTPase activity | HOM05D001703 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |