Gene: Sopen12g005040

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g005040
  • Transcript Identifier Sopen12g005040.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 3634339-3640849 : negative

Gene Family Information

  • ID HOM05D001048
  • #Genes/#Species 579/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g005040.1

Descriptions

  • Description Encodes a basic helix-loop-helix (bHLH) protein that regulates root hair development. One of the three Arabidopsis homologs of the Lotus japonicus ROOTHAIRLESS1 (LjRHL1) gene: At2g24260 (AtLRL1), At4g30980 (AtLRL2), and At5g58010 (AtLRL3). | LJRHL1-like 1 (LRL1) | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: root hair cell development, regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: 8 plant structures | EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain , Helix-loop-helix DNA-binding | BEST Arabidopsis thaliana protein match is: LJRHL1-like 2
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048235
ISO
PLAZA Integrative Orthologypollen sperm cell differentiation AT2G24260
GO:0055046
ISO
PLAZA Integrative Orthologymicrogametogenesis AT2G24260
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT2G24260
GO:0048767
ISO
PLAZA Integrative Orthologyroot hair elongation AT2G24260
GO:0080147
ISO
PLAZA Integrative Orthologyroot hair cell development AT2G24260
GO:0048765
ISO
PLAZA Integrative Orthologyroot hair cell differentiation AT2G24260

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046983
IEA
InterProprotein dimerization activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G24260
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT2G24260

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G24260

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 Helix-loop-helix DNA-binding domain superfamily
Mapman id Description
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)