Gene: Sopen11g028220

General Information

Structural Information

Species Solanum pennellii
Gene Identifier Sopen11g028220
Transcript Identifier Sopen11g028220.1
Gene Type Coding gene
Location Spenn-ch11 : 63945909-63949441 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000299
#Genes/#Species 1506/100
Phylogenetic origin

ID ORTHO05D000079
#Genes/#Species 2384/100
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

tid Sopen11g028220.1

Descriptions

Short descriptions
Ortholog descriptions

Description Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified. | BLUE MICROPYLAR END 3 (BME3) | CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type , Transcription factor, GATA, plant , Zinc finger, GATA-type | BEST Arabidopsis thaliana protein match is: GATA transcription factor 11

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006355	IEA	InterPro	regulation of transcription, DNA-templated
GO:0045893	ISO	PLAZA Homology (enrichment)	positive regulation of transcription, DNA-templated	HOM05D000299

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008270	IEA	InterPro	zinc ion binding
GO:0043565	IEA	InterPro	sequence-specific DNA binding
GO:0003677	ISO	PLAZA Homology (enrichment)	DNA binding	HOM05D000299
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT1G08000

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Homology (enrichment)	nucleus	HOM05D000299

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR013088	Zinc finger, NHR/GATA-type
IPR000679	Zinc finger, GATA-type

Mapman id	Description
15.5.1.3.1	RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (A/B-GATA)