Gene: Sopen11g005010
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen11g005010
- Transcript Identifier Sopen11g005010.1
- Gene Type Coding gene
- Location Spenn-ch11 : 3427148-3427883 : negative
Gene Family Information
- ID HOM05D000288
- #Genes/#Species 1531/100
- Phylogenetic origin
- ID ORTHO05D000173
- #Genes/#Species 1498/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen11g005010.1
Descriptions
- Description Histone superfamily protein | FUNCTIONS IN: DNA binding | INVOLVED IN: nucleosome assembly | LOCATED IN: nucleosome | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 16 growth stages | CONTAINS InterPro DOMAIN/s: Histone H3 , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: Histone superfamily protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0048235 | ISO | PLAZA Integrative Orthology | pollen sperm cell differentiation | AT1G19890 |
| GO:0009567 | ISO | PLAZA Integrative Orthology | double fertilization forming a zygote and endosperm | AT1G19890 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0046982 | IEA | InterPro | protein heterodimerization activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G10980 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000786 | IEA | InterPro | nucleosome | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G10980 |
| GO:0048555 | ISO | PLAZA Integrative Orthology | generative cell nucleus | AT1G19890 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT5G10980 |
| GO:0030875 | ISO | PLAZA Integrative Orthology | rDNA protrusion | AT5G10980 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.1.1.3 | Chromatin organisation.chromatin structure.DNA wrapping.histone (H3) |