Gene: Sopen11g001620

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g001620
  • Transcript Identifier Sopen11g001620.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 534838-536214 : positive

Gene Family Information

  • ID HOM05D000218
  • #Genes/#Species 1867/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g001620.1

Descriptions

  • Description One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. | polyubiquitin 10 (UBQ10) | CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup , Ubiquitin conserved site , Ubiquitin , Ubiquitin supergroup | BEST Arabidopsis thaliana protein match is: ubiquitin 4
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010224
ISO
PLAZA Integrative Orthologyresponse to UV-B AT5G03240
GO:0006511
ISO
PLAZA Integrative Orthologyubiquitin-dependent protein catabolic process AT5G20620

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G20620

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT5G37640
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G37640
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT5G37640
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT5G03240
GO:0005622
ISO
PLAZA Integrative Orthologyintracellular anatomical structure AT1G55060

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029071 Ubiquitin-like domain superfamily
IPR000626 Ubiquitin-like domain
IPR019956 Ubiquitin domain
Mapman id Description
19.2.2.1.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-fold protein (UBQ)