Gene: Sopen10g025390

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g025390
  • Transcript Identifier Sopen10g025390.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 67985731-67987318 : positive

Gene Family Information

  • ID HOM05D000212
  • #Genes/#Species 1878/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g025390.1

Descriptions

  • Description SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif. | S phase kinase-associated protein 1 (SKP1) | FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding | INVOLVED IN: negative regulation of DNA recombination, response to cadmium ion, mitosis, male meiosis, ubiquitin-dependent protein catabolic process | LOCATED IN: in 7 components | EXPRESSED IN: 35 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit , SKP1 component, dimerisation , SKP1 component , BTB/POZ fold , SKP1 component, POZ | BEST Arabidopsis thaliana protein match is: E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006511
IEA
InterProubiquitin-dependent protein catabolic process

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016897 S-phase kinase-associated protein 1
IPR011333 SKP1/BTB/POZ domain superfamily
IPR016072 SKP1 component, dimerisation
IPR001232 S-phase kinase-associated protein 1-like
IPR016073 SKP1 component, POZ domain
IPR036296 SKP1-like, dimerisation domain superfamily
Mapman id Description
19.2.2.8.1.2 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.target protein binding component SKP1/ASK1