Gene: Sopen10g025390
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen10g025390
- Transcript Identifier Sopen10g025390.1
- Gene Type Coding gene
- Location Spenn-ch10 : 67985731-67987318 : positive
Gene Family Information
- ID HOM05D000212
- #Genes/#Species 1878/99
- Phylogenetic origin
- ID ORTHO05D000225
- #Genes/#Species 1348/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen10g025390.1
Descriptions
- Description SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif. | S phase kinase-associated protein 1 (SKP1) | FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding | INVOLVED IN: negative regulation of DNA recombination, response to cadmium ion, mitosis, male meiosis, ubiquitin-dependent protein catabolic process | LOCATED IN: in 7 components | EXPRESSED IN: 35 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit , SKP1 component, dimerisation , SKP1 component , BTB/POZ fold , SKP1 component, POZ | BEST Arabidopsis thaliana protein match is: E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006511 | IEA | InterPro | ubiquitin-dependent protein catabolic process |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
19.2.2.8.1.2 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.target protein binding component SKP1/ASK1 |