Gene: Sopen10g020740
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen10g020740
- Transcript Identifier Sopen10g020740.1
- Gene Type Coding gene
- Location Spenn-ch10 : 57460038-57467728 : negative
Gene Family Information
- ID HOM05D000515
- #Genes/#Species 1048/100
- Phylogenetic origin
- ID ORTHO05D003530
- #Genes/#Species 218/94
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen10g020740.1
Descriptions
- Description Helicase protein with RING/U-box domain | FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site , Zinc finger, RING-type , Zinc finger, C3HC4 RING-type , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain , SNF2-related | BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005524 | IEA | InterPro | ATP binding | |
GO:0070615 | IEA | InterPro | nucleosome-dependent ATPase activity | |
GO:0046872 | IEA | InterPro | metal ion binding |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR038718 | SNF2-like, N-terminal domain superfamily |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
IPR013083 | Zinc finger, RING/FYVE/PHD-type |
IPR000330 | SNF2, N-terminal |
IPR001841 | Zinc finger, RING-type |
IPR018957 | Zinc finger, C3HC4 RING-type |
IPR001650 | Helicase, C-terminal |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
Mapman id | Description |
---|---|
12.4.8.3.2 | Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.Rad5/16-like group.chromatin remodeling factor (Rad5-like) |