Gene: Sopen10g001150

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g001150
  • Transcript Identifier Sopen10g001150.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 140693-153584 : positive

Gene Family Information

  • ID HOM05D000399
  • #Genes/#Species 1254/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g001150.1

Descriptions

  • Description Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. | dicer-like 1 (DCL1) | CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit , Double-stranded RNA-binding , Argonaute/Dicer protein, PAZ , Ribonuclease III , Double-stranded RNA-binding-like , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Dicer double-stranded RNA-binding fold , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: dicer-like 3 ., Ribonuclease III
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000911
ISO
PLAZA Integrative Orthologycytokinesis by cell plate formation AT1G01040
GO:0010267
ISO
PLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interference AT1G01040
GO:0035279
ISO
PLAZA Integrative OrthologymRNA cleavage involved in gene silencing by miRNA AT1G01040
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT1G01040
GO:2000034
ISO
PLAZA Integrative Orthologyregulation of seed maturation AT1G01040
GO:0010599
ISO
PLAZA Integrative Orthologyproduction of lsiRNA involved in RNA interference AT1G01040
GO:0009908
ISO
PLAZA Integrative Orthologyflower development AT1G01040
GO:0009616
ISO
PLAZA Integrative OrthologyRNAi-mediated antiviral immune response AT1G01040
GO:0048317
ISO
PLAZA Integrative Orthologyseed morphogenesis AT1G01040
GO:0009880
ISO
PLAZA Integrative Orthologyembryonic pattern specification AT1G01040
GO:0035196
ISO
PLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNA AT1G01040
GO:0007275
ISO
PLAZA Integrative Orthologymulticellular organism development Os03g0121800
GO:0031053
ISO
PLAZA Integrative Orthologyprimary miRNA processing AT1G01040
GO:0010098
ISO
PLAZA Integrative Orthologysuspensor development AT1G01040
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003725
ISO
PLAZA Integrative Orthologydouble-stranded RNA binding AT1G01040
GO:0004525
IEA
InterProribonuclease III activity
GO:0016787
IEA
InterProhydrolase activity
GO:0005524
IEA
InterProATP binding
GO:0003677
IEA
InterProDNA binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010445
ISO
PLAZA Integrative Orthologynuclear dicing body AT1G01040
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G01040

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036389 Ribonuclease III, endonuclease domain superfamily
IPR036085 PAZ domain superfamily
IPR003100 PAZ domain
IPR000999 Ribonuclease III domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR038248 Dicer dimerisation domain superfamily
IPR006935 Helicase/UvrB, N-terminal
IPR014720 Double-stranded RNA-binding domain
Mapman id Description
16.9.2.1.1 RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.endoribonuclease component DCL1