Gene: Sopen09g033760

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g033760
  • Transcript Identifier Sopen09g033760.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 81837238-81839328 : positive

Gene Family Information

  • ID HOM05D000268
  • #Genes/#Species 1624/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g033760.1

Descriptions

  • Description Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation. | SU(VAR)3-9 homolog 9 (SUVH9) | FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity | INVOLVED IN: DNA mediated transformation | LOCATED IN: nucleus, chloroplast | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: SET domain , SRA-YDG , Pre-SET zinc-binding sub-group , Pre-SET domain | BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 2
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034968
IEA
InterProhistone lysine methylation
GO:0080188
ISO
PLAZA Integrative Orthologygene silencing by RNA-directed DNA methylation AT2G33290
GO:0016571
ISO
PLAZA Integrative Orthologyhistone methylation AT2G33290
GO:0040029
ISO
PLAZA Integrative Orthologyregulation of gene expression, epigenetic AT2G33290

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0008270
IEA
InterProzinc ion binding
GO:0018024
IEA
InterProhistone-lysine N-methyltransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0000792
ISO
PLAZA Integrative Orthologyheterochromatin AT2G33290

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015947 PUA-like superfamily
IPR003105 SRA-YDG
IPR001214 SET domain
IPR036987 SRA-YDG superfamily
IPR007728 Pre-SET domain
Mapman id Description
12.5.1.1 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.methyl-DNA-binding factor (SUVH2/9)