Gene: Sopen09g005600

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g005600
  • Transcript Identifier Sopen09g005600.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 4346936-4349942 : negative

Gene Family Information

  • ID HOM05D000114
  • #Genes/#Species 2914/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g005600.1

Descriptions

  • Description member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. | EXP3 | INVOLVED IN: in 6 processes | LOCATED IN: endomembrane system, extracellular region | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase , Pollen allergen, N-terminal , Expansin , Rare lipoprotein A , Expansin/Lol pI , Expansin 45, endoglucanase-like , Pollen allergen/expansin, C-terminal | BEST Arabidopsis thaliana protein match is: expansin A4
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009664
IEA
InterProplant-type cell wall organization
GO:0009739
ISO
PLAZA Integrative Orthologyresponse to gibberellin AT2G37640
GO:0006949
ISO
PLAZA Integrative Orthologysyncytium formation AT2G37640
GO:0010114
ISO
PLAZA Integrative Orthologyresponse to red light AT2G37640

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
IEA
InterProextracellular region

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007118 Expansin/Lol pI
IPR036908 RlpA-like domain superfamily
IPR036749 Expansin, cellulose-binding-like domain superfamily
IPR009009 RlpA-like protein, double-psi beta-barrel domain
IPR007112 Expansin/pollen allergen, DPBB domain
IPR007117 Expansin, cellulose-binding-like domain
IPR002963 Expansin
Mapman id Description
21.4.2.1 Cell wall organisation.cell wall proteins.expansin activities.alpha-class expansin